<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:50:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470509" ref_strand="+" ref_description="SGN-E470509 [cSTB-18-D3]">
      <seq>gtatattagaagacatgagcaacaacagttttcttccggttattccagtttataggcttctaattgatagctatcaaaaagctggaagacttgaatttgccgttgagctacttaaagagatttcatcatcttcaccatttccgcatcttgataagaaaatgtactcttctttgatcgagtgcctttctgtttcaaacaaaattgatctggcatttgaattatatgtggacatgacaaagaaaggtgcagttccagagctgacggactttgttaacctcatcaagggtttaataagtatgaataaatgggagaatgcacttgaactctctgagagcttgtattacatgttacatgcatcgaaatccaccaatattcagctcctttagaggtcgagatatgatgcattgagactatctcatcctgaggcactacctgctggcacctgatatacattcttggagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="4892" stop="3828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4592" g_stop="4128" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E470509" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4592" e_stop="4128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATATTGGAGGACATGAGCGACAACAATTTTCTTCCAGTTATTCCAGTTTATAGGCTTCTAATTGATAGATATCAAAAAGCTGGAAGACTTGAATCTGCCGTTGAGCTACTTAAAGAGATTTCATCTTCTTCGCCATTTCCACATCTTGATAAGAGAATGTACTCTTCTTTGATTGAGTGTCTTTCTGTTTCAAACAAAATTGATCTGGCATTTGAGTTATATGTGGACATGATGAACAAAGGTGCAGTTCCAGAGCTGACGGACTTTGTTAACCTCATCAAGGGCTTAATAAGTATGAATAAATGGGAGAATGCACTTGAACTCTCTGAGAGCTTGTATTACATGCTACATGCATCGAAGTCCACCACCATTCAGCTCCTTTAGAGGTCAAGAAATGATAACATTGAGACCATCAAATCCTGAGGCACTACCTGCTGGCACCTCATATACATTCTTGGAGCTG</genome_strand>
        <mrna_strand>GTATATTAGAAGACATGAGCAACAACAGTTTTCTTCCGGTTATTCCAGTTTATAGGCTTCTAATTGATAGCTATCAAAAAGCTGGAAGACTTGAATTTGCCGTTGAGCTACTTAAAGAGATTTCATCATCTTCACCATTTCCGCATCTTGATAAGAAAATGTACTCTTCTTTGATCGAGTGCCTTTCTGTTTCAAACAAAATTGATCTGGCATTTGAATTATATGTGGACATGACAAAGAAAGGTGCAGTTCCAGAGCTGACGGACTTTGTTAACCTCATCAAGGGTTTAATAAGTATGAATAAATGGGAGAATGCACTTGAACTCTCTGAGAGCTTGTATTACATGTTACATGCATCGAAATCCACCAATATTCAGCTCCTTTAGAGGTCGAGATATGAT-GCATTGAGACTATCTCATCCTGAGGCACTACCTGCTGGCACCTGATATACATTCTTGGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E623832" ref_strand="+" ref_description="SGN-E623832 [88976]">
      <seq>caggcaatgtcagaaagcttttttgctgaagcagaagctaatgttcaagctattgcaaatgtactgcagacaacatcaacatattcagatagccaaaatcatataggtggacaccgaattgttgtgcctcttgcaaacgcacaactagaggagagaaatgttgatagcctatgtggttctccaattgtattctctagtactttaagatccttctataacaaagaaaacaacgtggactcccggtcagcagaagaatcttgtagagaagctgatcatggccaagctgggctcagaacatcaaaagttgaatgggtggaacaatatcagctcggtgttttcatcacattgacagtgctgccaagtggaaagaagggactcaagcgagtcaggttcagtaggaaaaagtttactgaaaaggaagcaaagaagtggtgggaagaaaatcagctttctgtgtacaaaaagtatgatgttgaaggatatgaaaatgtgaaccaagttttgctgaagaagtagtctccactttcctttttcttcacaatgtaaattgaacatcattacaatagtgatttattcatgttacagaaatgattatttaatgagcttaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="9678" stop="8376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9378" g_stop="8984" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8983" i_stop="8895" i_length="89">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8894" g_stop="8680" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="609" r_length="214" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E623832" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9378" e_stop="8984"/>
          <exon e_start="8894" e_stop="8680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCAATGTCAGAGAGCTTTTTTGCTGGAGCAGAAGCTAATGTTCAAGCTATTGCCAATGTACTGCAGACCACATCAACATATTCAGATAGCCAAAATCATACAAGTGGACACCGAATTGTTGTGCCTGTTGCAAACACACAACTAGAGGAGAGAAATGTTGATAGCCTATGTGGTTCTCCAATCGTATTCTCTAGTACTTTAAGATCCTTCTATAACAAAGAAGACAACGTGGAGTCCCGATCAACAGAAGAGTCTTGTAAAGAAACTGATCATGTCCAAGCTGGGATCAGAACATCAAAAGTTGAATGGGTGGAACAGTATCAACTCGGTGTCTTCATTACGTTGACAATACTGCCAAGTGGAAATAAGGGACTCAAGCGAGTCAGATTCAGGTATATCTCCTTTCATAAGTTGTATAATACATAAAATTTTCCACCTTTGATAATAGGTTACCAAATGGTGTTTTGGTTGAATTTTGCAGTAGGAAAAAGTTCACTGAGAAGGAAGCAAAGAAGTGGTGGGAAGAAAATCAGCTTTCTGTGTACAAAAAGTATGATGTTGAAGGATATGAAAATGTGAACCAAGTTTTGCTGAAGAAGTAGTCTCCACTTCCCTTTTTCTTCACAATGTAAATTGAATATGATTACAGTAGTGATTAATTTCAGGTTACAGAAAGGATTATTTAAGGAACTTAAC</genome_strand>
        <mrna_strand>CAGGCAATGTCAGAAAGCTTTTTTGCTGAAGCAGAAGCTAATGTTCAAGCTATTGCAAATGTACTGCAGACAACATCAACATATTCAGATAGCCAAAATCATATAGGTGGACACCGAATTGTTGTGCCTCTTGCAAACGCACAACTAGAGGAGAGAAATGTTGATAGCCTATGTGGTTCTCCAATTGTATTCTCTAGTACTTTAAGATCCTTCTATAACAAAGAAAACAACGTGGACTCCCGGTCAGCAGAAGAATCTTGTAGAGAAGCTGATCATGGCCAAGCTGGGCTCAGAACATCAAAAGTTGAATGGGTGGAACAATATCAGCTCGGTGTTTTCATCACATTGACAGTGCTGCCAAGTGGAAAGAAGGGACTCAAGCGAGTCAGGTTCAG.........................................................................................TAGGAAAAAGTTTACTGAAAAGGAAGCAAAGAAGTGGTGGGAAGAAAATCAGCTTTCTGTGTACAAAAAGTATGATGTTGAAGGATATGAAAATGTGAACCAAGTTTTGCTGAAGAAGTAGTCTCCACTTTCCTTTTTCTTCACAATGTAAATTGAACATCATTACAATAGTGATTTA-TTCATGTTACAGAAATGATTATTTAATGAGCTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559773" ref_strand="+" ref_description="SGN-E559773 [19324]">
      <seq>ggtcatcctggtgaggagacaaagctcttacgacctgtgtggcaaaacttgttgagcatgatttcattcaagtttcctgtgcaagcaccctaaccattgcactatctagcacaggaaaagtttatatgatgggaagtgcagtgcatgggcaactaggcaatccagaagccaaagataaatcattagtgcttgtgcaaggaaaacttagagaggagtttattacagagatatcctcgggatcatatcatgttgctgtgctaacatcaaggggaagtgtttacacatgggggaaaggagcaaatggacagttaggattaggtgatacaaaagatagaagttggccaactttagttgaatcactgagagacaggcaggtggaacatattgcttgtgggtcaagtactacagcagcaatatgtttgcacaagtctgcatctagtactgatcaatcatcttgcaaaggatgtaacatgtcttttggaattacgaggaagaagcaaaactgttacaattgtggccttctcttctgccgcacatgctgcagcaagaaaaccccaaatgcctctctggcccctgacaagactaaagcttttcgggtatgtgatccatgtttttaccaacttcagaggattgctcagtcaagcaggtcatcaaagcttgaaaaccatagtccaagacccttaccgattaccctaaaggcagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="11585" stop="10280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11285" g_stop="10580" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E559773" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11285" e_stop="10580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCATCCTGGTGAGGAGACAAAGCTCTTACCGACCTGTGTGGCAAAACTTGTTGATCATGATTTCATTCAAGTATCCTGTGCAAGCACGCTAACCGCTGCACTATCTAGCACAGGAAAAGTTTATATGATGGGAAGTGCAGTGCATGGGCAACTAGGCAATCCAGAAGCCAAAGATAAATCATTAGTGCTTGTGCAAGGAAAACTTAGGGAGGAGTTCATTACAGAGATATCCTCGGGATCATATCATGTTGCTGTGCTAACATCAAGGGGAAGTGTTTACACATGGGGGAAAGGAGAAAATGGACAGTTAGGATTAGGTGATACAAAAGATAGAAGTTGGCCAACTTTAGTTGAATCACTGAGAGACAGGCAGGTGGAACATATTGCTTGTGGGTCAAGTACTACAGCAGCAATATGTTTGCACAAATCTGCATCTAGTACTGATCAATCATCTTGCAAAGGATGTAACATGTCTTTTGGAATTACGAGGAAGAAGCAAAACTGTTACAATTGCGGCCTTCTCTTCTGCCGCACGTGCTGCAGCAAGAAAACCCCAAATGCCTCTCTAGCCCCTGACAAGACTAAAGCTTTTCGGGTATGTGATCCATGTTTTTATCAACTTCAGAGGATTGCTCAGTCAAGCAGGTCATCCAAGCTTGAAAACCGTAGTCCAAGACCCTTACCGATTACCATAAAAGCAGTTA</genome_strand>
        <mrna_strand>GGTCATCCTGGTGAGGAGACAAAGCTCTTA-CGACCTGTGTGGCAAAACTTGTTGAGCATGATTTCATTCAAGTTTCCTGTGCAAGCACCCTAACCATTGCACTATCTAGCACAGGAAAAGTTTATATGATGGGAAGTGCAGTGCATGGGCAACTAGGCAATCCAGAAGCCAAAGATAAATCATTAGTGCTTGTGCAAGGAAAACTTAGAGAGGAGTTTATTACAGAGATATCCTCGGGATCATATCATGTTGCTGTGCTAACATCAAGGGGAAGTGTTTACACATGGGGGAAAGGAGCAAATGGACAGTTAGGATTAGGTGATACAAAAGATAGAAGTTGGCCAACTTTAGTTGAATCACTGAGAGACAGGCAGGTGGAACATATTGCTTGTGGGTCAAGTACTACAGCAGCAATATGTTTGCACAAGTCTGCATCTAGTACTGATCAATCATCTTGCAAAGGATGTAACATGTCTTTTGGAATTACGAGGAAGAAGCAAAACTGTTACAATTGTGGCCTTCTCTTCTGCCGCACATGCTGCAGCAAGAAAACCCCAAATGCCTCTCTGGCCCCTGACAAGACTAAAGCTTTTCGGGTATGTGATCCATGTTTTTACCAACTTCAGAGGATTGCTCAGTCAAGCAGGTCATCAAAGCTTGAAAACCATAGTCCAAGACCCTTACCGATTACCCTAAAGGCAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306417" ref_strand="+" ref_description="SGN-E306417 [cLEX-13-J14]">
      <seq>gacattctgttcttgaaatttttttgaagatctctgttttcctgttcttgaaaaatcttcatacaaagttgtttctttttcaatttccaacaacccaaatcaaagattgctaatctgctttcaaagtttattccttttctctttttatgggaattccctttcaagaatagcagcaaagacactccattcatcttcaattggatccaatattccatttattgaaactctgctgccaaagctctgttttctttttcttttcgtgtgatttaacagtcagaatcagagaaataatgtggggcgccgttcaattgggagtattggcggcctttcttgtactctttgtccctgtcggtatggctggttggcacttgagtcgcaacaaaatgttatttttcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="25925" stop="26923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26225" g_stop="26623" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E306417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26225" e_stop="26623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTCTGTTCTTGAAATTTTTTTGAAGATCTCTGTTTTCCTGTTCTTGAAAAATCTTCATACAAAGTTGTTTCTTTTTCAATTTCCAACAACCCAAATCAAAGATTGCTAATCTGCTTTCAAAGTTTATTCCTTTTCTCTTTTTATGGGAATTCCCTTTCAAGAATAGCAGCAAAGACACTCCATTCATCTTCAATTGGATCCAATATTCCATTTATTGAAACTCTGCTGCCAAAGCTCTGTTTTCTTTTTCTTTTCGTGTGATTTAACAGTCAGAATCAGAGAAATAATGTGGGGCGCCGTTCAATTGGGAGTATTGGCGGCCTTTCTTGTACTCTTTGTCCCTGTCGGTATGGCTGGTTGGCACTTGAGTCGCAACAAAATGTTATTTTTCAGCT</genome_strand>
        <mrna_strand>GACATTCTGTTCTTGAAATTTTTTTGAAGATCTCTGTTTTCCTGTTCTTGAAAAATCTTCATACAAAGTTGTTTCTTTTTCAATTTCCAACAACCCAAATCAAAGATTGCTAATCTGCTTTCAAAGTTTATTCCTTTTCTCTTTTTATGGGAATTCCCTTTCAAGAATAGCAGCAAAGACACTCCATTCATCTTCAATTGGATCCAATATTCCATTTATTGAAACTCTGCTGCCAAAGCTCTGTTTTCTTTTTCTTTTCGTGTGATTTAACAGTCAGAATCAGAGAAATAATGTGGGGCGCCGTTCAATTGGGAGTATTGGCGGCCTTTCTTGTACTCTTTGTCCCTGTCGGTATGGCTGGTTGGCACTTGAGTCGCAACAAAATGTTATTTTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308990" ref_strand="+" ref_description="SGN-E308990 [cLEY-23-L15]">
      <seq>tggtgatggggccaccttaacatcttacaatgtagctcccaagaattggaattttggtcagacctttgaaggcaagcagtttgggtcttagactcatgccaaaagtgtatctattgctcatcttttattttggattgctcaacattggctagcaatgttgggacatttttgttcgagttcatgttggacaagtgactacctgattaagtcgttgcagagcaaagctctgcgattgtgcggtatgttgttgttcactcaatccttgtgaacttgaacggaaccagagaagaaacttgccacttgcaaggcaattttatcaagcaattgttttgccagtcaaatgttgcagaacctgaatcaaagttgttagaattgttgatttgtagattaagaatgttccttttcgaatctgatgaaatttatgaactcatccaaaggagacaaatatttccttgttattgtagatttttttgtcaaacgatcaaaacattatccttatcttgtcacctttatttattaaatatttgtttcagtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="31959" stop="30822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31659" g_stop="31122" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E308990" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31659" e_stop="31122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGATGGGGCCACCTTAACATCTTACAATGTAGCTCCCAAGAATTGGAATTTTGGTCAGACCTTTGAAGGCAAGCAGTTTGGGTCTTAGACTCATGCCAAAAGTGTATCTATTGCTCATCTTTTATTTTGGATTGCTCAACATTGGCTAGCAATGTTGGGACATTTTTGTTCGAGTTCATGTTGGACAAGTGACTACCTGATTAAGTCGTTGCAGAGCAAAGCTCTGCGATTGTGCGGTATGTTGTTGTTCACTCAATCCTTGTGAACTTGAACGGAACCAGAGAAGAAACTTGCCACTTGCAAGGCAATTTTATCAAGCAATTGTTTTGCCAGTCAAATGTTGCAGAACCTGAATCAAAGTTGTTAGAATTGTTGATTTGTAGATTAAGAATGTTCCTTTTCGAATCTGATGAAATTTATGAACTCATCCAAAGGAGACAAATATTTCCTTGTTATTGTAGATTTTTTTGTCAAACGATCAAAACATTATCCTTATCTTGTCACCTTTATTTATTAAATATTTGTTTCAGTGCCT</genome_strand>
        <mrna_strand>TGGTGATGGGGCCACCTTAACATCTTACAATGTAGCTCCCAAGAATTGGAATTTTGGTCAGACCTTTGAAGGCAAGCAGTTTGGGTCTTAGACTCATGCCAAAAGTGTATCTATTGCTCATCTTTTATTTTGGATTGCTCAACATTGGCTAGCAATGTTGGGACATTTTTGTTCGAGTTCATGTTGGACAAGTGACTACCTGATTAAGTCGTTGCAGAGCAAAGCTCTGCGATTGTGCGGTATGTTGTTGTTCACTCAATCCTTGTGAACTTGAACGGAACCAGAGAAGAAACTTGCCACTTGCAAGGCAATTTTATCAAGCAATTGTTTTGCCAGTCAAATGTTGCAGAACCTGAATCAAAGTTGTTAGAATTGTTGATTTGTAGATTAAGAATGTTCCTTTTCGAATCTGATGAAATTTATGAACTCATCCAAAGGAGACAAATATTTCCTTGTTATTGTAGATTTTTTTGTCAAACGATCAAAACATTATCCTTATCTTGTCACCTTTATTTATTAAATATTTGTTTCAGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693515" ref_strand="+" ref_description="SGN-E693515 [LH_Ea01I09](-)">
      <seq>acccattgaggcttttgagaagattgccatttggaaagcttctaatatgcccattcaataccgcaggataaagtgcagaaaggaaggtggagttcgattcactcttggtggctctggtatattcctgtcagttctaatcagtaatgttgcaggttcgggtgatatagtggcagcaaaagttaagggttcaagaacaggctggcttcctatgggtaggaactggggccaaaattggcacattaatgctgacttaaagaatcagccgctttcttttgagatgactagtggtgatggggcccccttaacatcttataatgtagctcccaagaattggaattttggtcagacctttgaaggcaagcagtttgggtcttagactcatgccaaaattgtatctattgctcatcttttgttttggattgctcaagattggctagcaatgttgggacatttttgttcgagttcatgttggacaagtgactacctgatttagttgttgcagagcaaagctctgcgattgtgctgtatgttgttgttcactcaatccttgtgaacttgaatgtaaccagagaagaaacttgccacgtgcaaggcaattttaccaagcaattgttttgccagtcaaatgttgcagaacctgaatcaaagttgttagagttgttgatttgtagattaagaatgttcctttttgaatctgatgaaatttaaaaagtgatcaaaaggagacaaatatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="33855" stop="30909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33555" g_stop="33490" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33489" i_stop="31879" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31878" g_stop="31209" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="736" r_length="670" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E693515" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33555" e_stop="33490"/>
          <exon e_start="31878" e_stop="31209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCATTGAGGCTTTTGAGAAGATTGCCATTTGGAAAGCTTCTAATATGCCCATTCAATACCGCAGGTTCGTGCAGCAACTAATATATGCTTGTTTTTAGAAAATATCTAACTGATTCTATGTTTCTCCTAATCCAAGAATCATACTTGTAGAATACAGTTATTCCATTTTAATTTATTTGTCCGATTATGACTTGATGTGGAATTTAAGAAAGCAAGAAAGACTTATCAAAATGTGTTATAATTTTCTAGTGTTAAGCAGGTTAGGTGAAAAGTTGAAAATAAATAGTTGCTAATAAAGGAAAGAGGCTAACAATCTAAACACACTAAAAACGAAAGCAAGACAAACAAATTGAAATGGACTGGATATTATTTAGCGTTAGAATGAAATAGAACTGAGAAAAGGGGAATGGATTCATAACTCAGATAATATAGGACTGAGGTTTAGTTGTTATATTGATTTACCCATTTATAGCCAAAAGTTTTACCAACTGTCAGCTAAAACATTCTCTGAACTGGTTTGATTACAGCTTAAAAACATCAAGTATTTACAGCTGTAGTTGAGGTTGAGGCCCGGGAGAAGAGCTGTGTTTGAGATTCTTGAATATTTAATGATAGGTAGAAACAAAAAGAAAGTATCTGAAGGACATTTACTGAAAACAGAAATGAAATTTGAATTAATGCTAAGGACAGGTAGAAATGAAAAAAAATAGACATTGCAATTGAGAGTACGAAAAGAATGAAGGGGGAAAAGGAAATAGAGATGTAAAGTACAATGGGCCCTAAAGGAAAAAGCCAATGAAATCTCCTGTTGATGAACTACACGAACCTAGCTATTACTTGTGATTTCATTGGCTTTTTCCTTTAGTAAGTAATTTCAATGACTTCCAGGGAGGGGCAAATCTTTTTCTAATATTTATGATATGCATGATCTGTATCAGAAGAATCATTATCTATGTATTGATTTCTGTAGATTCTCATATCTTCTATTTGTTTCAAAAGTTATCCTGAATTGTAATGTGAATGTTTCTCTTCAAGGGAAGTCTCTAATAACCTTTTGGCCAACGCATGTGAAAAAATATAAGCATATGGAACATCCAAACAAATGTATTTATAAAAATATCCTGCTGAAGATGATCTAAAGTTCATTTGTATTGGAAAATGAATTGAGAGCTTCCTGGGAAATGGGAATTGAACAGCACTATTGGTTCTGGCTGTGACTACCTCCCTATCAGTTTCACTTCTCCATCCTGTCCTAATAAAATAAATTCTACAAGCTAGAACTTTAGACCCATTCATTTGCTTAAGTCAATGGTGATTTATGTGCAAATAGATATAGGGATACACTCACAAGAGGTATTCCATGTCGCAATCCACCAAATATGCACCTTTTGGTATTATTTGCGTTCCATAATATTTTGTATAGAAATTAGATGTACTTCCCAACCAAGAAGCACCATGAAAAGATTTGAGACTGATTACACCATCCACCTTCAAGTGTCTTTTCTTTCCGCTTGTCCATTCAGTGCAATTTTCTGCAAATTTCATGTAGTCCTTCTGATCCCAAAATAGGTCTCCCTTTTTAATTTGACAATGCAAGTAATTTCCAGAATTCCCTTGTTGAAGACCTTTTATGTATGGCACCTAACCATATGCTTGGTTTCTTAATTCTGAACAGGATAAAGTGCAGAAAGGAAGGTGGAGTTCGATTCACTCTTGGTGGCTCTGGTATATTCTTGTCAGTTCTAATCAGTAATGTTGCAGGTTCGGGTGATATAGTGGCAGCAAAAGTTAAGGGTTCAAGAACAGGCTGGCTTCCTATGGGTAGGAACTGGGGCCAAAACTGGCACATTAATGCTGACTTAAAGAATCAGCCGCTTTCTTTTGAGATGACTAGTGGTGATGGGGCCACCTTAACATCTTACAATGTAGCTCCCAAGAATTGGAATTTTGGTCAGACCTTTGAAGGCAAGCAGTTTGGGTCTTAGACTCATGCCAAAAGTGTATCTATTGCTCATCTTTTATTTTGGATTGCTCAACATTGGCTAGCAATGTTGGGACATTTTTGTTCGAGTTCATGTTGGACAAGTGACTACCTGATTAAGTCGTTGCAGAGCAAAGCTCTGCGATTGTGCGGTATGTTGTTGTTCACTCAATCCTTGTGAACTTGAACGGAACCAGAGAAGAAACTTGCCACTTGCAAGGCAATTTTATCAAGCAATTGTTTTGCCAGTCAAATGTTGCAGAACCTGAATCAAAGTTGTTAGAATTGTTGATTTGTAGATTAAGAATGTTCCTTTTCGAATCTGATGAAATTTATGAACTCATCCAAAGGAGACAAATATTTC</genome_strand>
        <mrna_strand>ACCCATTGAGGCTTTTGAGAAGATTGCCATTTGGAAAGCTTCTAATATGCCCATTCAATACCGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGTGCAGAAAGGAAGGTGGAGTTCGATTCACTCTTGGTGGCTCTGGTATATTCCTGTCAGTTCTAATCAGTAATGTTGCAGGTTCGGGTGATATAGTGGCAGCAAAAGTTAAGGGTTCAAGAACAGGCTGGCTTCCTATGGGTAGGAACTGGGGCCAAAATTGGCACATTAATGCTGACTTAAAGAATCAGCCGCTTTCTTTTGAGATGACTAGTGGTGATGGGGCCCCCTTAACATCTTATAATGTAGCTCCCAAGAATTGGAATTTTGGTCAGACCTTTGAAGGCAAGCAGTTTGGGTCTTAGACTCATGCCAAAATTGTATCTATTGCTCATCTTTTGTTTTGGATTGCTCAAGATTGGCTAGCAATGTTGGGACATTTTTGTTCGAGTTCATGTTGGACAAGTGACTACCTGATTTAGTTGTTGCAGAGCAAAGCTCTGCGATTGTGCTGTATGTTGTTGTTCACTCAATCCTTGTGAACTTGAATGTAACCAGAGAAGAAACTTGCCACGTGCAAGGCAATTTTACCAAGCAATTGTTTTGCCAGTCAAATGTTGCAGAACCTGAATCAAAGTTGTTAGAGTTGTTGATTTGTAGATTAAGAATGTTCCTTTTTGAATCTGATGAAATTTAAAAAGTGATCAAAAGGAGACAAATATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439137" ref_strand="+" ref_description="SGN-E439137 [cSTA-11-E23]">
      <seq>ctttttgataagggtcagatctgtggtgcttgttatgaagtgaggtgtgtggaggatctgcggtggtgcattccgggtaccttctataattgttacagccactaatttttgtgcaccaaattatgggtttgatctagatggtggtggtcactgtaatccgcctaatgcccattttgtgctacccattgaggcttttgagaagattgctatttggaaagcttctaatatgcccattcaataccgcaggataaagtgcagaaaggaaggtggagttcgattcactgttggcggctctggaatattcttgtcagttctaatcagtaatgttgcaggttcgggtgatatagtggcagcaaaagttaagggttcaagaacaggctggcttcctatgggtaggaattggggccaaaactggcacatcaatgcagacttaaagaatcaaccgctttcttttgagatgactagtggtgatggggccaccttgacatcttacaatgtagctcccaagaattggaattttggtcagacctttgaaggcaagcagtttgggtcttagactcatgccaaaattgtatctattgctcatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="34034" stop="31235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33734" g_stop="33490" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33489" i_stop="31879" i_length="1611">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31878" g_stop="31535" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="590" r_length="344" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E439137" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33734" e_stop="33490"/>
          <exon e_start="31878" e_stop="31535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGACAAGGGTCAGATCTGTGGTGCTTGTTATGAAGTGAGGTGTGTGGAGGATCTGCGGTGGTGCATTCCGGGTA-CTTCTATAATTGTTACAGCCACTAATTTTTGTGCACCAAATTATGGGTTTGATCTAGATGGTGGTGGTCACTGTAATCCACCTAATGCCCATTTTGTGCTACCCATTGAGGCTTTTGAGAAGATTGCCATTTGGAAAGCTTCTAATATGCCCATTCAATACCGCAGGTTCGTGCAGCAACTAATATATGCTTGTTTTTAGAAAATATCTAACTGATTCTATGTTTCTCCTAATCCAAGAATCATACTTGTAGAATACAGTTATTCCATTTTAATTTATTTGTCCGATTATGACTTGATGTGGAATTTAAGAAAGCAAGAAAGACTTATCAAAATGTGTTATAATTTTCTAGTGTTAAGCAGGTTAGGTGAAAAGTTGAAAATAAATAGTTGCTAATAAAGGAAAGAGGCTAACAATCTAAACACACTAAAAACGAAAGCAAGACAAACAAATTGAAATGGACTGGATATTATTTAGCGTTAGAATGAAATAGAACTGAGAAAAGGGGAATGGATTCATAACTCAGATAATATAGGACTGAGGTTTAGTTGTTATATTGATTTACCCATTTATAGCCAAAAGTTTTACCAACTGTCAGCTAAAACATTCTCTGAACTGGTTTGATTACAGCTTAAAAACATCAAGTATTTACAGCTGTAGTTGAGGTTGAGGCCCGGGAGAAGAGCTGTGTTTGAGATTCTTGAATATTTAATGATAGGTAGAAACAAAAAGAAAGTATCTGAAGGACATTTACTGAAAACAGAAATGAAATTTGAATTAATGCTAAGGACAGGTAGAAATGAAAAAAAATAGACATTGCAATTGAGAGTACGAAAAGAATGAAGGGGGAAAAGGAAATAGAGATGTAAAGTACAATGGGCCCTAAAGGAAAAAGCCAATGAAATCTCCTGTTGATGAACTACACGAACCTAGCTATTACTTGTGATTTCATTGGCTTTTTCCTTTAGTAAGTAATTTCAATGACTTCCAGGGAGGGGCAAATCTTTTTCTAATATTTATGATATGCATGATCTGTATCAGAAGAATCATTATCTATGTATTGATTTCTGTAGATTCTCATATCTTCTATTTGTTTCAAAAGTTATCCTGAATTGTAATGTGAATGTTTCTCTTCAAGGGAAGTCTCTAATAACCTTTTGGCCAACGCATGTGAAAAAATATAAGCATATGGAACATCCAAACAAATGTATTTATAAAAATATCCTGCTGAAGATGATCTAAAGTTCATTTGTATTGGAAAATGAATTGAGAGCTTCCTGGGAAATGGGAATTGAACAGCACTATTGGTTCTGGCTGTGACTACCTCCCTATCAGTTTCACTTCTCCATCCTGTCCTAATAAAATAAATTCTACAAGCTAGAACTTTAGACCCATTCATTTGCTTAAGTCAATGGTGATTTATGTGCAAATAGATATAGGGATACACTCACAAGAGGTATTCCATGTCGCAATCCACCAAATATGCACCTTTTGGTATTATTTGCGTTCCATAATATTTTGTATAGAAATTAGATGTACTTCCCAACCAAGAAGCACCATGAAAAGATTTGAGACTGATTACACCATCCACCTTCAAGTGTCTTTTCTTTCCGCTTGTCCATTCAGTGCAATTTTCTGCAAATTTCATGTAGTCCTTCTGATCCCAAAATAGGTCTCCCTTTTTAATTTGACAATGCAAGTAATTTCCAGAATTCCCTTGTTGAAGACCTTTTATGTATGGCACCTAACCATATGCTTGGTTTCTTAATTCTGAACAGGATAAAGTGCAGAAAGGAAGGTGGAGTTCGATTCACTCTTGGTGGCTCTGGTATATTCTTGTCAGTTCTAATCAGTAATGTTGCAGGTTCGGGTGATATAGTGGCAGCAAAAGTTAAGGGTTCAAGAACAGGCTGGCTTCCTATGGGTAGGAACTGGGGCCAAAACTGGCACATTAATGCTGACTTAAAGAATCAGCCGCTTTCTTTTGAGATGACTAGTGGTGATGGGGCCACCTTAACATCTTACAATGTAGCTCCCAAGAATTGGAATTTTGGTCAGACCTTTGAAGGCAAGCAGTTTGGGTCTTAGACTCATGCCAAAAGTGTATCTATTGCTCATCTTT</genome_strand>
        <mrna_strand>CTTTTTGATAAGGGTCAGATCTGTGGTGCTTGTTATGAAGTGAGGTGTGTGGAGGATCTGCGGTGGTGCATTCCGGGTACCTTCTATAATTGTTACAGCCACTAATTTTTGTGCACCAAATTATGGGTTTGATCTAGATGGTGGTGGTCACTGTAATCCGCCTAATGCCCATTTTGTGCTACCCATTGAGGCTTTTGAGAAGATTGCTATTTGGAAAGCTTCTAATATGCCCATTCAATACCGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGTGCAGAAAGGAAGGTGGAGTTCGATTCACTGTTGGCGGCTCTGGAATATTCTTGTCAGTTCTAATCAGTAATGTTGCAGGTTCGGGTGATATAGTGGCAGCAAAAGTTAAGGGTTCAAGAACAGGCTGGCTTCCTATGGGTAGGAATTGGGGCCAAAACTGGCACATCAATGCAGACTTAAAGAATCAACCGCTTTCTTTTGAGATGACTAGTGGTGATGGGGCCACCTTGACATCTTACAATGTAGCTCCCAAGAATTGGAATTTTGGTCAGACCTTTGAAGGCAAGCAGTTTGGGTCTTAGACTCATGCCAAAATTGTATCTATTGCTCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689675" ref_strand="+" ref_description="SGN-E689675 [LH_Ea01I09]">
      <seq>tctctaatggttcaatttaaaaagagagaaaaaggggcgcctacaagaccaattggcaaagttcaaaaaagcagtgaagaaacatgaccatccatggcaatatctctgcaaaaagtgacaaactttcccttttctcatgattccctgcatagtgaaacaactcatcagattcaagagtttaagcaaagcaacaatttttcatctctttgatagtgaagaagaacatatacactccatctgtaagtatgctactactgtcacttttagtagcattcgcactcttttctccaaccccatttgtccattctcactacaactggtcaccttcttcttcctccacctccaattttcagtccgagtggcgtcctgcacgcgccacctattacgccgccgccgacccacgtgacgttgtgggtggcgcttgtggatacggggatttggagagaaatgggtatggaaaagctacagctgggttaagtactgtgctttttgacaagggtcagatctgtggtgcttgttatgaagtgaggtgtgtggaggatctgcgttggtgcattccgggtacttctataattgttacagctactaatttttgtgcaccaaattatgggtttgatctagatggtggtggtcactgtaatccacctaatgcccattttgtgctacccattgaggcttttgagaagattgccatttggaaagcttctaatatgcccattcaataccgcaggataaagtgcagaaaggaaggtggagttcgattcactcttggtggctctggtatattcctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="34507" stop="31516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34198" g_stop="33490" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="730" r_length="708" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33489" i_stop="31879" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31878" g_stop="31816" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="793" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E689675" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34198" e_stop="33490"/>
          <exon e_start="31878" e_stop="31816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAAAAAGGGGCGCCGACAAGCCCAATTGGCAAAGTTCAAAAAAGCAGTGAAGAAACATGACCATCCATGGTAATATCTCTGCAAAAAGTGACAAACTTTCCCTTTTCTCATAATTCCCTGCATAGTGAAACAACTCATCAGATTCAAGAGTTTAAGCAAAGCAACAATTTTTCATCTCTTTGATAGTGAAGAAGAACATATACACTCCATTTTGTAAGTATGCTACTACTGTCACTTTTAGTAGCATTCGCACTCTTTTCTCCAACCCCATTTGTCCATTCTCACTACAACTGGTCACCTTCTTCTTCCTCCACCTCCAATTTTCAGTCCGAGTGGCGTCCTGCACGCGCCACCTATTACGCCGCCGCCGACCCACGTGACGTTGTGGGTGGCGCGTGCGGATATGGGGATTTGGAGAGAAATGGGTATGGAAAAGCTACAGCTGGGTTAAGTACTGTGCTTTTTGACAAGGGTCAGATCTGTGGTGCTTGTTATGAAGTGAGGTGTGTGGAGGATCTGCGGTGGTGCATTCCGGGTACTTCTATAATTGTTACAGCCACTAATTTTTGTGCACCAAATTATGGGTTTGATCTAGATGGTGGTGGTCACTGTAATCCACCTAATGCCCATTTTGTGCTACCCATTGAGGCTTTTGAGAAGATTGCCATTTGGAAAGCTTCTAATATGCCCATTCAATACCGCAGGTTCGTGCAGCAACTAATATATGCTTGTTTTTAGAAAATATCTAACTGATTCTATGTTTCTCCTAATCCAAGAATCATACTTGTAGAATACAGTTATTCCATTTTAATTTATTTGTCCGATTATGACTTGATGTGGAATTTAAGAAAGCAAGAAAGACTTATCAAAATGTGTTATAATTTTCTAGTGTTAAGCAGGTTAGGTGAAAAGTTGAAAATAAATAGTTGCTAATAAAGGAAAGAGGCTAACAATCTAAACACACTAAAAACGAAAGCAAGACAAACAAATTGAAATGGACTGGATATTATTTAGCGTTAGAATGAAATAGAACTGAGAAAAGGGGAATGGATTCATAACTCAGATAATATAGGACTGAGGTTTAGTTGTTATATTGATTTACCCATTTATAGCCAAAAGTTTTACCAACTGTCAGCTAAAACATTCTCTGAACTGGTTTGATTACAGCTTAAAAACATCAAGTATTTACAGCTGTAGTTGAGGTTGAGGCCCGGGAGAAGAGCTGTGTTTGAGATTCTTGAATATTTAATGATAGGTAGAAACAAAAAGAAAGTATCTGAAGGACATTTACTGAAAACAGAAATGAAATTTGAATTAATGCTAAGGACAGGTAGAAATGAAAAAAAATAGACATTGCAATTGAGAGTACGAAAAGAATGAAGGGGGAAAAGGAAATAGAGATGTAAAGTACAATGGGCCCTAAAGGAAAAAGCCAATGAAATCTCCTGTTGATGAACTACACGAACCTAGCTATTACTTGTGATTTCATTGGCTTTTTCCTTTAGTAAGTAATTTCAATGACTTCCAGGGAGGGGCAAATCTTTTTCTAATATTTATGATATGCATGATCTGTATCAGAAGAATCATTATCTATGTATTGATTTCTGTAGATTCTCATATCTTCTATTTGTTTCAAAAGTTATCCTGAATTGTAATGTGAATGTTTCTCTTCAAGGGAAGTCTCTAATAACCTTTTGGCCAACGCATGTGAAAAAATATAAGCATATGGAACATCCAAACAAATGTATTTATAAAAATATCCTGCTGAAGATGATCTAAAGTTCATTTGTATTGGAAAATGAATTGAGAGCTTCCTGGGAAATGGGAATTGAACAGCACTATTGGTTCTGGCTGTGACTACCTCCCTATCAGTTTCACTTCTCCATCCTGTCCTAATAAAATAAATTCTACAAGCTAGAACTTTAGACCCATTCATTTGCTTAAGTCAATGGTGATTTATGTGCAAATAGATATAGGGATACACTCACAAGAGGTATTCCATGTCGCAATCCACCAAATATGCACCTTTTGGTATTATTTGCGTTCCATAATATTTTGTATAGAAATTAGATGTACTTCCCAACCAAGAAGCACCATGAAAAGATTTGAGACTGATTACACCATCCACCTTCAAGTGTCTTTTCTTTCCGCTTGTCCATTCAGTGCAATTTTCTGCAAATTTCATGTAGTCCTTCTGATCCCAAAATAGGTCTCCCTTTTTAATTTGACAATGCAAGTAATTTCCAGAATTCCCTTGTTGAAGACCTTTTATGTATGGCACCTAACCATATGCTTGGTTTCTTAATTCTGAACAGGATAAAGTGCAGAAAGGAAGGTGGAGTTCGATTCACTCTTGGTGGCTCTGGTATATTCTTGTC</genome_strand>
        <mrna_strand>AGAGAGAAAAAGGGGCGCCTACAAGACCAATTGGCAAAGTTCAAAAAAGCAGTGAAGAAACATGACCATCCATGGCAATATCTCTGCAAAAAGTGACAAACTTTCCCTTTTCTCATGATTCCCTGCATAGTGAAACAACTCATCAGATTCAAGAGTTTAAGCAAAGCAACAATTTTTCATCTCTTTGATAGTGAAGAAGAACATATACACTCCA-TCTGTAAGTATGCTACTACTGTCACTTTTAGTAGCATTCGCACTCTTTTCTCCAACCCCATTTGTCCATTCTCACTACAACTGGTCACCTTCTTCTTCCTCCACCTCCAATTTTCAGTCCGAGTGGCGTCCTGCACGCGCCACCTATTACGCCGCCGCCGACCCACGTGACGTTGTGGGTGGCGCTTGTGGATACGGGGATTTGGAGAGAAATGGGTATGGAAAAGCTACAGCTGGGTTAAGTACTGTGCTTTTTGACAAGGGTCAGATCTGTGGTGCTTGTTATGAAGTGAGGTGTGTGGAGGATCTGCGTTGGTGCATTCCGGGTACTTCTATAATTGTTACAGCTACTAATTTTTGTGCACCAAATTATGGGTTTGATCTAGATGGTGGTGGTCACTGTAATCCACCTAATGCCCATTTTGTGCTACCCATTGAGGCTTTTGAGAAGATTGCCATTTGGAAAGCTTCTAATATGCCCATTCAATACCGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAGTGCAGAAAGGAAGGTGGAGTTCGATTCACTCTTGGTGGCTCTGGTATATTCCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250925" ref_strand="+" ref_description="SGN-E250925 [cLEG-13-K20]">
      <seq>ggcgatcagctagaggtgattactaatggaagatacaagagtattgagcacagagtgattgctcaacaagatggcactaggatgtcaatagcttccttttataatccaggaagtgatgctgtcatatttccagcaccagagttgattgagaagacagaagaggacaacaaattgaagtatccaaaatttgtgtttgaagattatatgaagttgtatgcaggtctcaaattccaggctaaggagcctaggtttgaagcaatgaaggctgtggagactactgtcaacttaggtccaatagaaactgtttgataatcttttcaagggggaatttgtttatgttttaataggacactaattaagaggattaaagaagttaaggtttctaaagctgtgttgtccttttagttaataatttactatgttacttgatgtgtcattgtctgttgtttggtagtgagctgtttgaggttgttctctatggggtatattgtaaagtttcctcttttactttaatgaaatctatgcttaaagaaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="42350" stop="41219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42139" g_stop="42125" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42124" i_stop="42043" i_length="82">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42042" g_stop="41518" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="540" r_length="525" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E250925" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42139" e_stop="42125"/>
          <exon e_start="42042" e_stop="41518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATCAGCTAGAGGTATGCATTCCTTTTAACGTGTTGTAGCAGGTAATCGCCTTATTTTTCTAGGGTAGTACTGATTTTGTTTGAATGATTGAAGGTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACAACAAATTGAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACTGTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTTAAAGAAAACAAAC</genome_strand>
        <mrna_strand>GGCGATCAGCTAGAG..................................................................................GTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACAACAAATTGAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACTGTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTTAAAGAAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558470" ref_strand="+" ref_description="SGN-E558470 [17815]">
      <seq>tttttttttttttttctgcaagcatagatttcattaaagtaaaataggaaactttacaatataccccatagagaacaacctcactaccatacaagagacaatgacacatcaagtaacataagttacttagaagccttagtaaattattaactaaaaggacaacacaactttagaaacctaaacttctttaatcctcttaattagtgtcctattaatacataaacaaattcccccctcaaaacattatcaaacagtttctattggacctaagttgacagtagtctccacagccttcattgcttcaaacctaggctccttagcctgaaatttgagacctgcatacaacttcatataatcttcaaacacaaattttggatacttcaatttgttctcttcttctgtcttctcaatcaactctggtgctggaaatatgacagcatcacttcctggattataaaaggaagctattgacatcctagtgccatcttgttgagcaatcactctgtgttcaatactcttgtatcttccattagtaatcacctcaagctgatcgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="41219" stop="42350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41519" g_stop="42034" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="532" r_length="525" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E558470" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41519" e_stop="42034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTTCTTTAAGCATAGATTTCATTAAAGTAAAAGAGGAAACTTTACAATATACCCCATAGAGAACAACCTCA-AACAGCTCACTACCAAACAACAGA-CAA-TGACA-CA--T-C-AAGTAACA-TAGTAAATTATTAACTAAAAGGACAACACAGCTTTAGAAACCTTAACTTCTTTAATCCTCTTAATTAGTGTCCTATTAAAACATAAACAAATTCCCCCTTGAAAAGATTATCAAACAGTTTCTATTGGACCTAAGTTGACAGTAGTCTCCACAGCCTTCATTGCTTCAAACCTAGGCTCCTTAGCCTGGAATTTGAGACCTGCATACAACTTCATATAATCTTCAAACACAAATTTTGGATACTTCAATTTGTTGTCCTCTTCTGTCTTCTCAATCAACTCTGGTGCTGGAAATATGACAGCATCACTTCCTGGATTATAAAAGGAAGCTATTGACATCCTAGTGCCATCTTGTTGAGCAATCACTCTGTGCTCAATACTCTTGTATCTTCCATTA</genome_strand>
        <mrna_strand>TTTTTTTTCTGCAAGCATAGATTTCATTAAAGTAAAATAGGAAACTTTACAATATACCCCATAGAGAACAACCTCACTACCATACAAGAGACAATGACACATCAAGTAACATAAGTTACTTAGAAGCCTTAGTAAATTATTAACTAAAAGGACAACACAACTTTAGAAACCTAAACTTCTTTAATCCTCTTAATTAGTGTCCTATTAATACATAAACAAATTCCCCCCTCAAAACATTATCAAACAGTTTCTATTGGACCTAAGTTGACAGTAGTCTCCACAGCCTTCATTGCTTCAAACCTAGGCTCCTTAGCCTGAAATTTGAGACCTGCATACAACTTCATATAATCTTCAAACACAAATTTTGGATACTTCAATTTGTTCTCTTCTTCTGTCTTCTCAATCAACTCTGGTGCTGGAAATATGACAGCATCACTTCCTGGATTATAAAAGGAAGCTATTGACATCCTAGTGCCATCTTGTTGAGCAATCACTCTGTGTTCAATACTCTTGTATCTTCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229130" ref_strand="+" ref_description="SGN-E229130 [cLEL-29-C24](-)">
      <seq>tgatgctgtcatatttccagcaccagagttgattgagaagacagaagaggncaacnaaattaagtatccaaaatttgtgtttgaagattatatgaagttgtatgcaggtctcaaattccaggctaaggagcctaggtttgaagcaatgaaggctgtggagactactcgtcaacttaggtccaatagaaactgtttgataatcttttcaagggggaatttgtttatgttttaataggaccctaattaagaggattaaagaagttaaggtttctaaagctgtgttgtccttttagttaataatttactatgttacttgatgtgtcattgtctgttgtttggtagtgagctgtttgaggttgttctctatggggtatattgtaaagtttcctcttttactttaatgaaatctatgcttaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="42244" stop="41219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41944" g_stop="41519" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="449"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E229130" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41944" e_stop="41519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCTGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACAACAAATTGAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACT-GTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTTAAAGAAAACAAA</genome_strand>
        <mrna_strand>TGATGCTGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGNCAACNAAATTAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACTCGTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACCCTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTTAAAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216632" ref_strand="+" ref_description="SGN-E216632 [cLEL-1-G14](-)">
      <seq>tgtcatatttccagcaccagagttgattgagaagacagaagaggacaacaaattgaagtatccaaaatttgtgtttgaagattatatgaagttgtatgcaggtctcaaattccaggctaaggagcctaggtttgaagcaatgaaggctgtggagactactgtcaacttaggtccaatagaaactgtttgataatcttttcaagggggaatttgtttatgttttaataggacactaattaagaggattaaagaagttaaggtttctaaagctgtgttgtccttttagttaataatttactatgttacttgatgtgtcattgtctgttgtttggtagtgagctgtttgaggttgttctctatggggtatattgtaaagttccctcttttactttaatgaaatctatgcttaaagaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="42238" stop="41219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41938" g_stop="41519" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="433"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E216632" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41938" e_stop="41519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACAACAAATTGAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACTGTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTTAAAGAAAACAAA</genome_strand>
        <mrna_strand>TGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACAACAAATTGAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACTGTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTCCCTCTTTTACTTTAATGAAATCTATGCTTAAAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228650" ref_strand="+" ref_description="SGN-E228650 [cLEL-29-C24](-)">
      <seq>agtatccaaaatttgtgtttgaagattatatgaagttgtatgcaggtctcaaattccaggctaaggagcctaggttttaagcaatgaaggctgtggagactactgtcaacttaggtccaatagaaactgtttgataatcttttcaagggggaatttgtttatgttttaataggaccctaattaagaggattaaagaagttaaggtttctaaagctgtgttgtccttttagttaataatttactatgttacctgatgtgtcattgtctgttgtttggtagtgaactgtttgaggttgttctctatggggtatattgtaaagtttcctcttttactttaatgaaatctatgcttaaagaaaaaaaaaaaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="42182" stop="41219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41882" g_stop="41519" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="365" polyA_stop="386"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E228650" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41882" e_stop="41519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACTGTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTTAAAGAAAACAAA</genome_strand>
        <mrna_strand>AGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTTAAGCAATGAAGGCTGTGGAGACTACTGTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACCCTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACCTGATGTGTCATTGTCTGTTGTTTGGTAGTGAACTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTTAAAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747711" ref_strand="+" ref_description="SGN-E747711 [GI|3986118]">
      <seq>tcgagcggccgcccgggcaggtagcaaattaaaagataaactagagagtcagcttagtaagaaaagaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacgcagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttatttgaaaaaagcattttatggctcaaagggtccaacttttggtaccaaagttagcaactatcctccttgtcccaagccagacttgatcaaaggccttcgcgctcacacggatgctggtggcatcatccttctattccaagatgacaaagtcagtggtctccaattgctaaaagatggcaattggattgatgtacctcctatgaaacactctattgtcatcaacctcggcgatcagctagaggtgattactaatggaagatacaagagtattgagcacagagtgattgctcaacaagatggcactaggatgtcaatagcttccttttataatccaggaagtgatgctgtcatatttccagcaccagagttgattgagaagacagaagaggacatcaaattgaagtatccaaaatttgtgtttgaagattatatgaagttgtatgcaggtctcaaattccaggctaaggagcctaggtttgaagcaatgaaggctgtggagactactgtcaacttaggtccaatagaaactgtttgataattttttcaagggggaatttgtttatgttttaataggacactaattaagaggattaaagaagttaaggtttctaaagctgtgttgtccttttagttaataatttactatgttacttgatgtgtcattgtctgttgtttggtagtgagctgtttgaggttgttctctatggggtatattgtaaagtttcctcttttactttaatgaaatctatgcttaaagaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43480" stop="41222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43178" g_stop="43013" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="190" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="417" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42125" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="751" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42124" i_stop="42043" i_length="82">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42042" g_stop="41522" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="1272" r_length="521" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E747711" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1248</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43178" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42125"/>
          <exon e_start="42042" e_stop="41522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAGGTATGCATTCCTTTTAACGTGTTGTAGCAGGTAATCGCCTTATTTTTCTAGGGTAGTACTGATTTTGTTTGAATGATTGAAGGTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACAACAAATTGAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACTGTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTTAAAGAAAAC</genome_strand>
        <mrna_strand>CAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACGCAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAG..................................................................................GTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACATCAAATTGAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACTGTCAACTTAGGTCCAATAGAAACTGTTTGATAATTTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTTAAAGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223900" ref_strand="+" ref_description="SGN-E223900 [cLEL-19-F11](-)">
      <seq>ggcacgaggtttgataatcttttcaagagggaatttgtttatgttttaataggacactcattaacaggattaaagaagttaaggtttctaaagctgtgttgtccttttagttaataatttactatgttacttgatgtgtcattgtctgttgtttggtagtgagctgtttaaggttgttctctatggggtattttgtaaagtttcctcctcttctttaataaaatctatgcttataaaataataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="42054" stop="41219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41762" g_stop="41530" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="243" polyA_stop="252"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E223900" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41762" e_stop="41530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTTA</genome_strand>
        <mrna_strand>GGCACGAGGTTTGATAATCTTTTCAAGAGGGAATTTGTTTATGTTTTAATAGGACACTCATTAACAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTAAGGTTGTTCTCTATGGGGTATTTTGTAAAGTTTCCTCCTCTTCTTTAATAAAATCTATGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223786" ref_strand="+" ref_description="SGN-E223786 [cLEL-19-F11](-)">
      <seq>ggcacgaggtttgataatcttttcaagggggaatttgtttatgttttaataggacactaattaacaggattaaacaagttaaggtttctaaagctgtgttgtccttttagttaataatttactatgttacttgatgtgtcattgtctgttgtttggtagtgagctgtttcaggttgttctctatggggtatattgtaaagtttcctctttttctttaatggaatctatgcttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="42054" stop="41219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41762" g_stop="41531" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="235" polyA_stop="252"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E223786" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41762" e_stop="41531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTT</genome_strand>
        <mrna_strand>GGCACGAGGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAACAGGATTAAACAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTCAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTTCTTTAATGGAATCTATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745681" ref_strand="+" ref_description="SGN-E745681 [GI|47105189]">
      <seq>gatcactcacaccatagagaacagataccaaacacaagcaaattaaaagataaactagagagtcagcttagtaagaaaagaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttatttgaaaaaagcattttatggctcaaagggtccaacttttggtaccaaagttagcaactatcctccttgtcccaagccagacttgatcaaaggccttcgcgctcacacggatgctggtggcatcatccttctattccaagatgacaaagtcagtggtctccaattgctaaaagatggcaattggattgatgtacctcctatgaaacactctattgtcatcaacctcggcgatcagctagaggtgattactaatggaagatacaagagtattgagcacagagtgattgctcaacaagatggcactaggatgtcaatagcttccttttataatccaggaagtgatgctgtcatatttccagcaccagagttgattgagaagacagaagaggacaacaaattgaagtatccaaaatttgtgtttgaagattatatgaagttgtatgcaggtctcaaattccaggctaaggagcctaggtttgaagcaatgaaggctgtggagactactgtcaacttaggtccaatagaaactgtttgataatcttttcaagggggaatttgtttatgttttaataggacactaattaagaggattaaagaagttaaggtttctaaagctgtgttgtccttttagttaataatttactatgttacttgatgtgtcattgtctgttgtttggtagtgagctgtttgaggttgttctctatggggtatattgtaaagtttcctcttttactgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43515" stop="41240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43216" g_stop="43013" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="431" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42125" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="765" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42124" i_stop="42043" i_length="82">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42042" g_stop="41549" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="1259" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1261" polyA_stop="1275"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E745681" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1259</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43216" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42125"/>
          <exon e_start="42042" e_stop="41549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACTCACACCATAGAGAACAGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAGGTATGCATTCCTTTTAACGTGTTGTAGCAGGTAATCGCCTTATTTTTCTAGGGTAGTACTGATTTTGTTTGAATGATTGAAGGTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACAACAAATTGAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACTGTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACT</genome_strand>
        <mrna_strand>GATCACTCACACCATAGAGAACAGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAG..................................................................................GTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACAACAAATTGAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACTGTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269212" ref_strand="+" ref_description="SGN-E269212 [cLEI-16-B24]">
      <seq>gttatttgaaaaaagcattttatggctcaaagggtccaacttttggtaccagggttagcaactatcctccttgtcccaagccagacttgatcaaaggccttcgcgctcacacggatgctggtggcatcatccttctattccaagatgacaaagtcagtggtctccaattgctaaaagatggcaattggattgatgtacctcctatgaaacactctattgtcatcaacctcggcgatcagctagaggtgattactaatggaagatacaagagtattgagcacagagtgattgctcaacaagatggcactaggatgtcaatagcttccttttataatccaggaagtgatgctgtcatatttccagcaccagagttgattgagaagacagaagaggacaacaaattgaagtatccaaaatttgcgtttgaagattatatgaagttggatgcaggtctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="42669" stop="41531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42369" g_stop="42125" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42124" i_stop="42043" i_length="82">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42042" g_stop="41831" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="457" r_length="212" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E269212" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42369" e_stop="42125"/>
          <exon e_start="42042" e_stop="41831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAGGTATGCATTCCTTTTAACGTGTTGTAGCAGGTAATCGCCTTATTTTTCTAGGGTAGTACTGATTTTGTTTGAATGATTGAAGGTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACAACAAATTGAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAA</genome_strand>
        <mrna_strand>GTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAGGGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAG..................................................................................GTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACAACAAATTGAAGTATCCAAAATTTGCGTTTGAAGATTATATGAAGTTGGATGCAGGTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298593" ref_strand="+" ref_description="SGN-E298593 [cLET-41-L14]">
      <seq>ctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatgttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttatttgaaaaaagcattttatggctcaaagggtccaacttttggtaccaaagttagcaactatcctccttgtcccaagccagacttgatcaaaggccttcgcgctcacacggatgctggtggcatcatccttctattccaagatgacaaagtcagtggtctccaattgctaaaagatggcaattggattgatgtacctcctatgaaacactctattgtcatcaacctcggcgatcagctagaggtgattactaatggaagatacaagagtattgagcacagagtgattgctcaacaagatggcactaggatgtcaatagcttccttttataatccaggaagtgatgctgtcatatttccagcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43080" stop="41621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42780" g_stop="42675" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42458" g_stop="42125" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="440" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42124" i_stop="42043" i_length="82">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42042" g_stop="41921" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="562" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E298593" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42780" e_stop="42675"/>
          <exon e_start="42458" e_stop="42125"/>
          <exon e_start="42042" e_stop="41921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAGGTATGCATTCCTTTTAACGTGTTGTAGCAGGTAATCGCCTTATTTTTCTAGGGTAGTACTGATTTTGTTTGAATGATTGAAGGTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATTTCCAGCACC</genome_strand>
        <mrna_strand>CTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATGTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAG..................................................................................GTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATTTCCAGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701219" ref_strand="+" ref_description="SGN-E701219 [FA15BD12]">
      <seq>gagaacagataccaaacacaagcaaattaaaagataaactagagagtcagcttagtaagaaaagaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttatttgaaaaaagcattttatggctcaaagggtccaacttttggtaccaaagttagcaactatcctccttgtcccaagccagacttgatcaaaggccttcgcgctcacacggatgctggtggcatcatccttctattccaagatgacaaagtcagtggtctccaattgctaaaagatggcaattggattgatgtacctcctatgaaacactctattgtcatcaacctcggcgatcagctagaggtgattactaatggaagatacaagagtattgagcacagagtgattgctcaacaagatggcactaggatgtcaatagcttccttttataatccaagaagtgatgctgtcatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43500" stop="41630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43200" g_stop="43013" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="415" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42125" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="749" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42124" i_stop="42043" i_length="82">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42042" g_stop="41930" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="862" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E701219" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43200" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42125"/>
          <exon e_start="42042" e_stop="41930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACAGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAGGTATGCATTCCTTTTAACGTGTTGTAGCAGGTAATCGCCTTATTTTTCTAGGGTAGTACTGATTTTGTTTGAATGATTGAAGGTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATT</genome_strand>
        <mrna_strand>GAGAACAGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAG..................................................................................GTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAAGAAGTGATGCTGTCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699347" ref_strand="+" ref_description="SGN-E699347 [FA09CH08]">
      <seq>cagatcagataccaaacacaagcaaattaaaagataaactagagagtcagcttagtaagaaaagaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttatttgaaaaaagcattttatggctcaaagggtccaacttttggtaccaaagttagcaactatcctccttgtcccaagccagacttgatcaaaggccttcgcgctcacacggatgctggtggcatccatccttctattccaagatgacaaagtcagtggtctccaattgctaaaagatggcaattggattgatgtacctcctatgaaacactctattgtcatcaacctcggcgatcagctagaggtgattactaatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43499" stop="41726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43200" g_stop="43013" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="415" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42125" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="750" r_length="335" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42124" i_stop="42043" i_length="82">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42042" g_stop="42026" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="767" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E699347" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43200" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42125"/>
          <exon e_start="42042" e_stop="42026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACAGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCAT-CATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAGGTATGCATTCCTTTTAACGTGTTGTAGCAGGTAATCGCCTTATTTTTCTAGGGTAGTACTGATTTTGTTTGAATGATTGAAGGTGATTACTAATGGAAG</genome_strand>
        <mrna_strand>CAGATCAGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAG..................................................................................GTGATTACTAATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335039" ref_strand="+" ref_description="SGN-E335039 [cTOE-9-I22]">
      <seq>aaattaaaagacaaactagagagtcagcttagtaagaaaaagaaaaaaaaaccagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaacctggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttatttgaaaaaagcattttatggctcaaagggtccaacttttggtaccaaagttagcaactatcctccttgtcccaagccagacttgatcaaaggccttcgcgctcacacggatgcctggtggcatcatccttctattccaagatgacaaagtcagtggtctccaattgctaaaagatggcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43477" stop="41884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43177" g_stop="43013" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="395" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42184" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="671" r_length="276" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E335039" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43177" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGA-AAAGAAAAAAAAA-CAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAA-CTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATG-CTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATT</genome_strand>
        <mrna_strand>AAATTAAAAGACAAACTAGAGAGTCAGCTTAGTAAGAAAAAGAAAAAAAAACCAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACCTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332014" ref_strand="+" ref_description="SGN-E332014 [cTOD-16-D6]">
      <seq>aaacacaagcaaattaaaagataaactagagagtcagcttagtaagaaaagaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttatttgaaaaaagcattttatggctcaaagggtccaacttttggtaccaaagttagcaactatcctccttgtcccaagccagacttgatcaaaggccttcgcgctcacacggatgctggtggcatcatccttctattccaagatgacaaagtcagtggtctccaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43487" stop="41899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43187" g_stop="43013" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="402" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42199" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="662" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E332014" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43187" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGC</genome_strand>
        <mrna_strand>AAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327054" ref_strand="+" ref_description="SGN-E327054 [cTOC-18-L13]">
      <seq>agataccaaacacaagcaaattaaaagataaactagagagtcagcttagtaagaaaagaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttatttgaaaaaagcattttatggctcaaagggtccaacttttggtaccaaagttagcaactatcctccttgtcccagccagacttgatcaanggcttcgcgctcacacggatgctggtggcatcatccttctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43494" stop="41930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43194" g_stop="43013" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="409" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42230" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="636" r_length="227" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E327054" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43194" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTC</genome_strand>
        <mrna_strand>AGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCC-AGCCAGACTTGATCAANGG-CTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332960" ref_strand="+" ref_description="SGN-E332960 [cTOD-19-J23]">
      <seq>acaagcaaattaaaagataaactagagagtcagcttagtaagaaaagaaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttattttgaaaaagcattttatggctcaaagggtccaacttttggtaccaaagttagcaactatccctctttgtcccagccagacttgatcaanggccttcgcgctcacacngatgctggtggcatcatccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43483" stop="41934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43183" g_stop="43013" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="399" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42234" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="624" r_length="225" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E332960" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43183" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAG-AAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTAT-CCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCT</genome_strand>
        <mrna_strand>ACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTTGAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCCTCTTTGTCCC-AGCCAGACTTGATCAANGGCCTTCGCGCTCACACNGATGCTGGTGGCATCATCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284300" ref_strand="+" ref_description="SGN-E284300 [cLER-16-B18]">
      <seq>caaattaaaagataaactatagagtcagcttagtaagaaaagaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaacttagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggcttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttacaatgtgtatgaagttcctgacctgtatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttatttgaaaaaagcattctatggctcaaagggtccaacttttggtaccaaagttagcaactatcctccttgtcccaagccagacttgatcaaaggccttcgcgctcacacggatgctggtggcatcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43478" stop="41937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43178" g_stop="43013" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="393" r_length="227" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42237" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="615" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E284300" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43178" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCT</genome_strand>
        <mrna_strand>CAAATTAAAAGATAAACTATAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTTAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGCTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTACAATGTGTATGAAGTTCCTGACCTGTATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTCTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330992" ref_strand="+" ref_description="SGN-E330992 [cTOD-10-J18]">
      <seq>tgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttatttgaaaaaagcattttatggctcaaagggtccaacttttggtaccaaagttagcaactatcctccttgtcccaagccagacttgatcaaaggccttcgcgctcacacggatgctggtggcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43376" stop="41940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43076" g_stop="43013" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="291" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42240" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="510" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E330992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43076" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCAT</genome_strand>
        <mrna_strand>TGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332835" ref_strand="+" ref_description="SGN-E332835 [cTOD-18-H18]">
      <seq>cagataccaaacacaagctaattaaaagataaactacagagtcagcttagtaagaaaagaaaataaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaattcaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctgtatgatgaatacaggaaagatatgaaagattttgcactgaagctacagaaactagctgataatcttttggatttgctatgtgagaatcttggactacagaaaggttatttgaaaaaagcattttatggctcaaagggtccaacttttggtaccaaagttagcaactatcctccttgtcccaagccagacttgatcaaaggccttcgcgctcacacggatgctggtggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43495" stop="41943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43195" g_stop="43013" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="410" r_length="227" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42243" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="626" r_length="216" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E332835" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43195" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCAT</genome_strand>
        <mrna_strand>CAGATACCAAACACAAGCTAATTAAAAGATAAACTACAGAGTCAGCTTAGTAAGAAAAGAAAATAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTCAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGTATGATGAATACAG........................................................................................................................................................................................................................GAAAGATATGAAAGATTTTGCACTGAAGCTACAGAAACTAGCTGATAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTACAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329165" ref_strand="+" ref_description="SGN-E329165 [cTOD-2-K24]">
      <seq>agataccaaacacaagcaaattaaaagataaactagagagtcagcttagtaagaaaagaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttatttgaaaaaagcattttatggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43494" stop="42042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43194" g_stop="43013" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="409" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42342" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="526" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E329165" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43194" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTC</genome_strand>
        <mrna_strand>AGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331587" ref_strand="+" ref_description="SGN-E331587 [cTOD-9-J12]">
      <seq>aaacacaagcaaattaaaagataaactagagagtcagcttagtaagaaaagaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttatttgaaaaaagcattttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43487" stop="42047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43187" g_stop="43013" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="402" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42347" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="514" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E331587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43187" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTAT</genome_strand>
        <mrna_strand>AAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303143" ref_strand="+" ref_description="SGN-E303143 [cLEX-5-B19]">
      <seq>acaagcatattaaaagataaactagagagtcagcttagtaagaaaagaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggactagagaaaggttatttgaaaaaagcatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43483" stop="42048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43183" g_stop="43013" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="398" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42348" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="509" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E303143" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43183" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTA</genome_strand>
        <mrna_strand>ACAAGCATATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338125" ref_strand="+" ref_description="SGN-E338125 [cTOE-13-G10]">
      <seq>tagagagtcagcttagtaagaaaagaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatcttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43461" stop="42079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43161" g_stop="43013" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="376" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42379" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="456" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E338125" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43161" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGAC</genome_strand>
        <mrna_strand>TAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336711" ref_strand="+" ref_description="SGN-E336711 [cTOE-5-E8]">
      <seq>ttaaaagataaactagagagtcagcttagtaagaaaagaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggaaagttatgaaagattttgcactgaagctagagaaactagctgaaaatcttttggatttgctatgtgagaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43474" stop="42083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43174" g_stop="43013" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42675" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="389" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42458" g_stop="42383" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="465" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E336711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43174" e_stop="43013"/>
          <exon e_start="42901" e_stop="42675"/>
          <exon e_start="42458" e_stop="42383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTT</genome_strand>
        <mrna_strand>TTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG........................................................................................................................................................................................................................GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419541" ref_strand="+" ref_description="SGN-E419541 [STM-29-F4]">
      <seq>cagataccaaacacaagcaaactagagagtcagccaagtgagaagaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgaggttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaaggggcattacaagaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaagcatctccctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggtttataaaacaaaaaagatccaatttttatcctttcatataaacagaacctatgctagctggctccaaatatctgggatttgtatcagttcaacttgtcacttataaattgacaagctttactgttgatcagataatttaacttatccttagtcttgagacttgattagtagctctgtttgttttactaactttatattacctctaacctcatgacaggaaagttatgaaagattttgcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43495" stop="42134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43136" g_stop="43013" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="165" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42434" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="636" r_length="471" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E419541" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43136" e_stop="43013"/>
          <exon e_start="42901" e_stop="42434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAG---A-GT--C-TATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTG</genome_strand>
        <mrna_strand>GAAGAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................GTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGGCATTACAAGAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAGCATCTCCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCCTTTCATATAAACAGAACCTATGCTAGCTGGCTCCAAATATCTGGGATTTGTATCAGTTCAACTTGTCACTTATAAATTGACAAGCTTTACTGTTGATCAGATAATTTAACTTATCCTTAGTCTTGAGACTTGATTAGTAGCTCTGTTTGTTTTACTAAC-T---TTATATTACCTCTAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331828" ref_strand="+" ref_description="SGN-E331828 [cTOD-7-O4]">
      <seq>gcaaattaaaagataaactagagagtcagcttagtaagaaaagaaaaaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgagcttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaagggacattacaaaaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaaacatcttcctgtttccaatgtgtatgaagttcctgacctggatgatgaatacaggtttataaaacaaaaaagatccaatttttatcatttcatataaacatatcctatactagatggctccaaatatctgggatttgtatcagttcagcttgtcacttataaagtgacaaactttactgttgatcagagtctatccttagtcttgagtcttgattagtagttcttttttttttttttaacttaacttatattacctataacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43479" stop="42167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43179" g_stop="43013" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42467" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="603" r_length="436" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E331828" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43179" e_stop="43013"/>
          <exon e_start="42901" e_stop="42467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTC-TTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCT</genome_strand>
        <mrna_strand>GCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464769" ref_strand="+" ref_description="SGN-E464769 [cPRO-19-E3]">
      <seq>caaacacaagcaaactagagagtcagccaagtgagaagaaaaacagaaaaatggagagtaatttcccagttgtggatatggggttgcttcaaactgagaaaaggcctgaagcaatggacaaaatcaaagatgcatgtgaaaactggggtttctttgaggttgtgaatcatgggatttctcatgaattgctggacacagtggagaatttaactaaggggcattacaagaagtgcatggaacaaaggtttaaagaaatggtggcaagtaaaggacttgaagctgtccaaactgaaattgatgatcttgattgggagagcactttcttcttgaagcatctccctgtttcccatgtgtatgaagttcctgacctggatgatgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="43441" stop="42378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43136" g_stop="43013" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="158" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42678" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="382" r_length="224" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E464769" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43136" e_stop="43013"/>
          <exon e_start="42901" e_stop="42678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAGGTAAAATTATATTTTACACTAATACAGGATCTTGAAGAAATAAAAAAATTAACTTTCTTGATTTCTGAACTTTTTTTTTTTTTTGGTTGTCTGTTATGTGATATATCAAAGCTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATA</genome_strand>
        <mrna_strand>GAAGAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG...............................................................................................................GTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGGCATTACAAGAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAGCATCTCCCTGTTTCCCATGTGTATGAAGTTCCTGACCTGGATGATGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726402" ref_strand="+" ref_description="SGN-E726402 [LA11CH03]">
      <seq>cggcttcccctgttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaagcttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58962" stop="61049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59262" g_stop="59805" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="739" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60749" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="855" r_length="116" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E726402" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59262" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTTCCCCTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATT</genome_strand>
        <mrna_strand>CG-GCTTCCCCTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAA-GCTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624566" ref_strand="+" ref_description="SGN-E624566 [GI|2598048]">
      <seq>gcttccccgttctcttcatttcatatttacaaaaaatagcattctgttctttctctatttcactctcaaaaatggcttccatctcttctctcaatcaaattccttgcaaaactctccaaattacatcccaatattcaaaacccacatccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagatcaatttcagtcaaagaattcacaaacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagcaaataaggccgggtggagtagcggttgtggaagaagaaccacctaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttatatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcactcagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttctctggtttgtttcctttgttgtcaaggggtaatctgcctctggttcgagttgaggagatttcccagaccatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgtgtccagattaaatttgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgtcgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcagtggccaagtccatttcaagtcaaccaccaattaagtttcctattaccaacaacaatgcacaatcatggctgctgacaacatacttggatgatgagcttaggatctccagaggagatgctggcagtgtttttgtgttgatcaaggaaggcagtcccctcttgaagccttaaagacgcatgtttttggagttgtgtatgtttttcataatataggagagcaaacagtagaaagtaaaaaaaaaatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtctcatgatttgtacttatggcatatgaaatattaaaatatagcttgaaagaagtagacatacaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58965" stop="61433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59265" g_stop="59805" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="737" r_length="196" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="61091" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="1196" r_length="459" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1240" polyA_stop="1261"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E624566" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>1196</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59265" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="61091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCCCTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCT-GAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGT-TTTTCATCATAATATAGGAGAGCAAACACTAGAAAGT-AAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATG</genome_strand>
        <mrna_strand>GCTTCCCC-GTTCTCTTCATTTCATATTTACAAAAAATAGCATTCTGTTCTTTCTCTATTTCACTCTCAAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAAAACTCTCCAAATTACATCCCAATATTCAAAACCCACATCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGATCAATTTCAGTCAAAGAATTCACAAACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGCAAATAAGGCCGGGTGGAGTAGCGGTTGTGGAAGAAGAACCACCTAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTATATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACTCAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTCTCTGGTTTGTTTCCTTTGTTGTCAAGGGGTAATCTGCCTCTGGTTCGAGTTGAGGAGATTTCCCAGACCATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGTGTCCAG...............................................................................................ATTAAATTTGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTCGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCAGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTACCAACAACAATGCACAATCATGGCTGCTGACAACATACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTTTTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTT-AAAGACGCATGTTTTTGGAGTTGTGTATGTTTTTCATAATATAGGAGAGCAAACAGTAGAAAGTAAAAAAAAAATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGT-CTCATGATTTGTACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729550" ref_strand="+" ref_description="SGN-E729550 [LA21BF04]">
      <seq>gcttcccctgttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58965" stop="61092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59265" g_stop="59805" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="737" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60792" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="897" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E729550" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59265" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCCCTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTT</genome_strand>
        <mrna_strand>GCTTCCCCTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704589" ref_strand="+" ref_description="SGN-E704589 [FA24CH01]">
      <seq>cctttataatcttcatttcatatttacaaaaaatagcattctcctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctcccacttacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgcctggacctttacctacaacttccattagtaccaatgccaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58969" stop="60810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59269" g_stop="59805" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60510" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="707" r_length="170" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E704589" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59269" e_stop="59805"/>
          <exon e_start="60342" e_stop="60510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTG-CTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTC</genome_strand>
        <mrna_strand>CCTTTATAATCTTCATTTCATATTTACAAAAAATAGCATTCTCCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCCACTTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCCTGGACCTTTACCTACAACTTCCATTAGTACCAATGCCAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726269" ref_strand="+" ref_description="SGN-E726269 [LA11BD01]">
      <seq>cgctgttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaaaccccttcaaaggcttgattacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58972" stop="61054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59270" g_stop="59805" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="732" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60754" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="854" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E726269" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59270" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTC</genome_strand>
        <mrna_strand>CGCTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAACCCCTTCAAAGGCTTGATTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730939" ref_strand="+" ref_description="SGN-E730939 [LA25CG01]">
      <seq>cctatatggtcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggctcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagaattaattcgaagaaggcataattggaacacccccagttgacagattccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58976" stop="60982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59271" g_stop="59805" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="730" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60682" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="781" r_length="51" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E730939" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59271" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACA-CCCCAGTTGACAGATTCCAT</genome_strand>
        <mrna_strand>CCT-ATATGGTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGCTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................AATTAATTCGAAGAAGGCATAATTGGAACACCCCCAGTTGACAGATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729448" ref_strand="+" ref_description="SGN-E729448 [LA21AD07]">
      <seq>ctgttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58972" stop="61010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59272" g_stop="59805" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="730" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60710" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="809" r_length="79" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E729448" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59272" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAG-AAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTG</genome_strand>
        <mrna_strand>CTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730841" ref_strand="+" ref_description="SGN-E730841 [LA25BE03]">
      <seq>ccgttttattcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58972" stop="60993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59272" g_stop="59805" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="730" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60693" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="791" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E730841" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59272" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTG</genome_strand>
        <mrna_strand>CCGTTTTATTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729624" ref_strand="+" ref_description="SGN-E729624 [LA21CD11]">
      <seq>ctgttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58972" stop="60982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59272" g_stop="59805" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="730" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60682" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="780" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E729624" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59272" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCAT</genome_strand>
        <mrna_strand>CTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731129" ref_strand="+" ref_description="SGN-E731129 [LA26AH11]">
      <seq>cgttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagaataaattcgaagaaggcataattggaacaccccagttgacagattccatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58974" stop="60984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59273" g_stop="59805" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="729" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60684" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="781" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E731129" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59273" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCG</genome_strand>
        <mrna_strand>CGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................AATAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333486" ref_strand="+" ref_description="SGN-E333486 [cTOD-20-H15]">
      <seq>tgttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgntgtctttgctggacctttagctacaacttccattagtaccaatgccaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58973" stop="60809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59273" g_stop="59805" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60509" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="701" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E333486" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59273" e_stop="59805"/>
          <exon e_start="60342" e_stop="60509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATT</genome_strand>
        <mrna_strand>TGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGNTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398505" ref_strand="+" ref_description="SGN-E398505 [TUS-17-H24]">
      <seq>tgttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattaataccaatgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58973" stop="60806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59273" g_stop="59805" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60506" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="698" r_length="165" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E398505" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59273" e_stop="59805"/>
          <exon e_start="60342" e_stop="60506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAA</genome_strand>
        <mrna_strand>TGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAATACCAATGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332170" ref_strand="+" ref_description="SGN-E332170 [cTOD-16-P1]">
      <seq>tgttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58973" stop="60792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59273" g_stop="59805" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60492" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="683" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E332170" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59273" e_stop="59805"/>
          <exon e_start="60342" e_stop="60492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATT</genome_strand>
        <mrna_strand>TGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAG-TTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333481" ref_strand="+" ref_description="SGN-E333481 [cTOD-20-D11]">
      <seq>tgttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctgggtcgagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58973" stop="60707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59273" g_stop="59805" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60407" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="599" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E333481" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59273" e_stop="59805"/>
          <exon e_start="60342" e_stop="60407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGA</genome_strand>
        <mrna_strand>TGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGGTCGAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330570" ref_strand="+" ref_description="SGN-E330570 [cTOD-8-I8]">
      <seq>tgttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58973" stop="60706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59273" g_stop="59805" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60406" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="598" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E330570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59273" e_stop="59805"/>
          <exon e_start="60342" e_stop="60406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTG</genome_strand>
        <mrna_strand>TGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324951" ref_strand="+" ref_description="SGN-E324951 [cTOC-11-O4]">
      <seq>tgttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58973" stop="60079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59273" g_stop="59779" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E324951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59273" e_stop="59779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACT</genome_strand>
        <mrna_strand>TGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729509" ref_strand="+" ref_description="SGN-E729509 [LA21BB06]">
      <seq>gttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttnggacaaaagattgatctaagccccttcaaaggcttgattacttcagtcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58974" stop="61060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59274" g_stop="59805" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="728" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60760" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="856" r_length="128" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E729509" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59274" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCA</genome_strand>
        <mrna_strand>GTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTNGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466053" ref_strand="+" ref_description="SGN-E466053 [cPRO-23-E17]">
      <seq>gttctcttcatttcatatttacaaaaaatagcattctgttctttctctatttcactctcaaaaatggcttccatctcttctctcaatcaaattccttgcaaaactctccaaattacatcccaatattcaaaacccacatccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaacaacacagatcaatttcagtcaaagaattcacaaacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagcaaataaggtcgggtggagtagcggttgtggaagaagaaccacctaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttatatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcactcagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttctctggtttgtttcctttgttgtcaaggggtaatctgcctctggttcgagttgaggagatttcccagaccatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaaagtcaaaacgtgtccagattaaatttgaagaaggcataattggaacaccccagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58974" stop="60971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59274" g_stop="59805" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="729" r_length="196" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60671" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="768" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E466053" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59274" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCT-GAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTG</genome_strand>
        <mrna_strand>GTTCTCTTCATTTCATATTTACAAAAAATAGCATTCTGTTCTTTCTCTATTTCACTCTCAAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAAAACTCTCCAAATTACATCCCAATATTCAAAACCCACATCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACAACACAGATCAATTTCAGTCAAAGAATTCACAAACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGCAAATAAGGTCGGGTGGAGTAGCGGTTGTGGAAGAAGAACCACCTAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTATATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACTCAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTCTCTGGTTTGTTTCCTTTGTTGTCAAGGGGTAATCTGCCTCTGGTTCGAGTTGAGGAGATTTCCCAGACCATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAAGTCAAAACGTGTCCAG...............................................................................................ATTAAATTTGAAGAAGGCATAATTGGAACACCCCAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466064" ref_strand="+" ref_description="SGN-E466064 [cPRO-23-G17]">
      <seq>gttctcttcatttcatatttacaaaaaatagcattctgttctttctctatttcactctcaaaaatggcttccatctcttctctcaatcaaattccttgcaaaactctccaaattacatcccaatattcaaaacccacatccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaacaacacagatcaatttcagtcaaagaattcacaaacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagcaaataaggtcgggtggagtagcggttgtggaagaagaaccacctaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttatatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcactcagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttctctggtttgtttcctttgttgtcaaggggtaatctgcctctggttcgagttgaggagatttcccagaccatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgtgtccagattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58974" stop="60841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59274" g_stop="59805" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="729" r_length="196" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60638" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="735" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E466064" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59274" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCT-GAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAA</genome_strand>
        <mrna_strand>GTTCTCTTCATTTCATATTTACAAAAAATAGCATTCTGTTCTTTCTCTATTTCACTCTCAAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAAAACTCTCCAAATTACATCCCAATATTCAAAACCCACATCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACAACACAGATCAATTTCAGTCAAAGAATTCACAAACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGCAAATAAGGTCGGGTGGAGTAGCGGTTGTGGAAGAAGAACCACCTAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTATATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACTCAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTCTCTGGTTTGTTTCCTTTGTTGTCAAGGGGTAATCTGCCTCTGGTTCGAGTTGAGGAGATTTCCCAGACCATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGTGTCCAG...............................................................................................ATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728663" ref_strand="+" ref_description="SGN-E728663 [LA18CB11]">
      <seq>gttttcttnatttnatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcatagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58974" stop="60835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59274" g_stop="59805" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60535" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="726" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E728663" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59274" e_stop="59805"/>
          <exon e_start="60342" e_stop="60535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCC</genome_strand>
        <mrna_strand>GTTTTCTTNATTTNATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCATAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481721" ref_strand="+" ref_description="SGN-E481721 [cSTD-19-C16]">
      <seq>gttctcttcatttcatatttacaaaaaatagcattctgttctttctctatttcactctcaaaaatggcttccatctcttctctcaatcaaattccttgcaaaactctccaaattacatcccaatattcaaaacccacatccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaacaacacagatcaatttcagtcaaagaattcacaaacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagcaaataaggtcgggtggagtagcggttgtggaagaagaaccacctaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttatatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcactcagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttctctggtttgtttcctttgttgtcaaggggtaatctgcctctggttcgagttgaggagatttcccagaccatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctaccacttccattagtaccaatgccaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58974" stop="60810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59274" g_stop="59805" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60510" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="702" r_length="169" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E481721" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59274" e_stop="59805"/>
          <exon e_start="60342" e_stop="60510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCT-GAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTC</genome_strand>
        <mrna_strand>GTTCTCTTCATTTCATATTTACAAAAAATAGCATTCTGTTCTTTCTCTATTTCACTCTCAAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAAAACTCTCCAAATTACATCCCAATATTCAAAACCCACATCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACAACACAGATCAATTTCAGTCAAAGAATTCACAAACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGCAAATAAGGTCGGGTGGAGTAGCGGTTGTGGAAGAAGAACCACCTAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTATATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACTCAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTCTCTGGTTTGTTTCCTTTGTTGTCAAGGGGTAATCTGCCTCTGGTTCGAGTTGAGGAGATTTCCCAGACCATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACCACTTCCATTAGTACCAATGCCAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482486" ref_strand="+" ref_description="SGN-E482486 [cSTD-22-I20]">
      <seq>gttctcttcatttcatatttacaaaaaatagcattctgttctttctctatttcactctaaaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacatccaaaatctcaaccttacccatctcctccacgaatttcccatcaaaaacagaacaacacagatcaatttcagtcaaagaattcacaaacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagcaaataaggccgggtggagtagcggttgtggaagaagaaccacctaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttatatggaaccaatagaggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcactcagcttgagtcgaagaaccctaatccagaacctacgggaagccttgactcttctcaacggcaaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58974" stop="60098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59274" g_stop="59798" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E482486" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59274" e_stop="59798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCT-GAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTAC-TGAAGCCTTGACTCTTCTCAACGGCAAATGGA</genome_strand>
        <mrna_strand>GTTCTCTTCATTTCATATTTACAAAAAATAGCATTCTGTTCTTTCTCTATTTCACTCTAAAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACATCCAAAATCTCAACCTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACAACACAGATCAATTTCAGTCAAAGAATTCACAAACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGCAAATAAGGCCGGGTGGAGTAGCGGTTGTGGAAGAAGAACCACCTAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTATATGGAACCAATAGAGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACTCAGCTTGAGTCGAAGAACCCTAATCCAGAACCTACGGGAAGCCTTGACTCTTCTCAACGGCAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210434" ref_strand="+" ref_description="SGN-E210434 [cLEC-35-I19]">
      <seq>gttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58974" stop="59992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59274" g_stop="59692" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E210434" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59274" e_stop="59692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCT</genome_strand>
        <mrna_strand>GTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334518" ref_strand="+" ref_description="SGN-E334518 [cTOD-23-N19]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="727" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60684" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="779" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E334518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCG</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334179" ref_strand="+" ref_description="SGN-E334179 [cTOD-21-B19]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggngcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="727" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60660" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="755" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E334179" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAA</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGNGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328209" ref_strand="+" ref_description="SGN-E328209 [cTOC-21-K6]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="726" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60642" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="736" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E328209" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCG</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACC-ATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332980" ref_strand="+" ref_description="SGN-E332980 [cTOD-19-B12]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="727" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60642" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="737" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E332980" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCG</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333697" ref_strand="+" ref_description="SGN-E333697 [cTOD-22-E23]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaacgcgtccagattaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="726" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60640" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="734" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E333697" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATT</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCC-AAACGCGTCCAG...............................................................................................ATTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333802" ref_strand="+" ref_description="SGN-E333802 [cTOD-22-D4]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaacctaatccagcacctactgaaagcttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgcccaaatcgaagtcagaagtccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60528" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="718" r_length="187" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E333802" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
          <exon e_start="60342" e_stop="60528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAA</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAAACCTAATCCAGCACCTACTGAAAGCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCCAAATCGAAGTCAGAAGTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333738" ref_strand="+" ref_description="SGN-E333738 [cTOD-22-G10]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagaagttcactgtcccaaactctgnntgtcttgctggacctttagcntacacttccattagtaccaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60503" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="693" r_length="162" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E333738" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
          <exon e_start="60342" e_stop="60503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTG-TTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGC</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAAGTTCACTGTCCCAAACTCTGNNTGTC-TTGCTGGACCTTTAGCNTACACTTCCATTAGTACCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333560" ref_strand="+" ref_description="SGN-E333560 [cTOD-22-C4]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggnttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60503" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="693" r_length="162" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E333560" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
          <exon e_start="60342" e_stop="60503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGC</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGNTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333122" ref_strand="+" ref_description="SGN-E333122 [cTOD-19-L15]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60501" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="691" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E333122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
          <exon e_start="60342" e_stop="60501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAAT</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328906" ref_strand="+" ref_description="SGN-E328906 [cTOC-24-F15]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60468" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="658" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E328906" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
          <exon e_start="60342" e_stop="60468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCT</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333469" ref_strand="+" ref_description="SGN-E333469 [cTOD-20-G12]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggnntcgagtgaagagattcacagactatcgattctgagagtttcactgtccaaaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60456" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="645" r_length="114" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E333469" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
          <exon e_start="60342" e_stop="60456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGG-TTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCT</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGNNTCGAG-TGAAGAGA-TTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330717" ref_strand="+" ref_description="SGN-E330717 [cTOD-8-K12]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60401" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="591" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E330717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
          <exon e_start="60342" e_stop="60401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCG</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333454" ref_strand="+" ref_description="SGN-E333454 [cTOD-20-M1]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactanggcggaaatcgttgaactcatcacacagcttgagtcgaagaccctaatccagcacctactggagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcggggttgttccccttgttgtcacggggcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60390" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="579" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E333454" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
          <exon e_start="60342" e_stop="60390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTG</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTANGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAG-ACCCTAATCCAGCACCTACTGGAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGGTTGTTCCCCTTGTTGTCACGGGGCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322818" ref_strand="+" ref_description="SGN-E322818 [cTOB-30-K18]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaaaagtccgggtggagtagcggttgtggatgaagaaccaccataggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatccttttcgggtttgttccccttgttgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60378" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="567" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E322818" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
          <exon e_start="60342" e_stop="60378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCA</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAA-AAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCATAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCCTTTTCGGGTTTGTTCCCCTTGTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330929" ref_strand="+" ref_description="SGN-E330929 [cTOD-10-K4]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattaccatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgaccaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E330929" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTA-CATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGA-CAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACCATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACCAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329529" ref_strand="+" ref_description="SGN-E329529 [cTOD-11-K21]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E329529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330230" ref_strand="+" ref_description="SGN-E330230 [cTOD-4-E20]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E330230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333246" ref_strand="+" ref_description="SGN-E333246 [cTOD-20-P3]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59805" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E333246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322817" ref_strand="+" ref_description="SGN-E322817 [cTOB-30-K16]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaaaatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaaatgagttgctgaagaagcattggcggattctttttatggaacaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59780" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E322817" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTC</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAAATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAAATGAGTTGCTGAAGAAGC-ATTGGCGGATTCTTTTTATGGAA-CAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329883" ref_strand="+" ref_description="SGN-E329883 [cTOD-3-L12]">
      <seq>ttttcttcatttcatattcacaaaaaatagcaggctgctcttactctgttgcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtaacagttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaatacgggtttgagtgctagcactgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="60078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59778" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E329883" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGAC</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTCACAAAAAATAGCAGGCTGCTCTTACTCTGTTGCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAACAGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATACGGGTTTGAGTGCTAGCACTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332587" ref_strand="+" ref_description="SGN-E332587 [cTOD-18-I12]">
      <seq>ttttcttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58975" stop="59843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59543" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E332587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGG</genome_strand>
        <mrna_strand>TTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481939" ref_strand="+" ref_description="SGN-E481939 [cSTD-20-M17]">
      <seq>tctcttcatttcatatttacaaaaaatagcattctgttctttctctatttcactctaaaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacatccaaaatctcaaccttacccatctcctccacgaatttcccatcaaaaacagaacaacacagatcaatttcagtcaaagaattcacaaacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagcaaataacgccgggtggagtaacggttgtggaagaagaaccacctaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttatatggaaccaatagaggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcactcagcttgagtcgaagaaccctaatccagaacctacggaagccttgactcttctcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58978" stop="60088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59276" g_stop="59788" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E481939" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59276" e_stop="59788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCT-GAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAAC</genome_strand>
        <mrna_strand>TCTCTTCATTTCATATTTACAAAAAATAGCATTCTGTTCTTTCTCTATTTCACTCTAAAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACATCCAAAATCTCAACCTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACAACACAGATCAATTTCAGTCAAAGAATTCACAAACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGCAAATAACGCCGGGTGGAGTAACGGTTGTGGAAGAAGAACCACCTAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTATATGGAACCAATAGAGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACTCAGCTTGAGTCGAAGAACCCTAATCCAGAACCTACGGAAGCCTTGACTCTTCTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731031" ref_strand="+" ref_description="SGN-E731031 [LA25DG07]">
      <seq>ccctttaaggcggcnnnncntcattncatatnnacaaaaaatacccttctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcctctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatccattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgcccaattcgaagtcagaagtccaaaacgcgtccagattaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58979" stop="60843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59279" g_stop="59805" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="545" r_length="527" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="741" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60640" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="749" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E731031" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59279" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATT</genome_strand>
        <mrna_strand>CNTCATTNCATATNNACAAAAAATACCCTTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCCTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCCATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCCAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333373" ref_strand="+" ref_description="SGN-E333373 [cTOD-20-C24]">
      <seq>ttcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58980" stop="60809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59280" g_stop="59805" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60509" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="694" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E333373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59280" e_stop="59805"/>
          <exon e_start="60342" e_stop="60509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATT</genome_strand>
        <mrna_strand>TTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333212" ref_strand="+" ref_description="SGN-E333212 [cTOD-20-G22]">
      <seq>tcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58981" stop="60843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59281" g_stop="59805" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="721" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60639" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="728" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E333212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59281" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAAT</genome_strand>
        <mrna_strand>TCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332797" ref_strand="+" ref_description="SGN-E332797 [cTOD-18-L3]">
      <seq>tcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagaaattcacagactatcgattctgagagttcactgtccaaaactctggtgtctttgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58981" stop="60771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59281" g_stop="59805" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60471" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="653" r_length="128" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E332797" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59281" e_stop="59805"/>
          <exon e_start="60342" e_stop="60471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGA</genome_strand>
        <mrna_strand>TCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGA-AATTCACAGACTATCGATTCTGAGAG-TTCACTGTCCAAAACTCTGGTGTCTTTGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333331" ref_strand="+" ref_description="SGN-E333331 [cTOD-20-F2]">
      <seq>tcatttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagacaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaataaccaccaaaggagccaagtgaaattgagatgctgaagaagcaattggcggattctttttatggaaccaataggggattgagtgctagcagtgagactatggcgggaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58981" stop="60115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59281" g_stop="59805" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E333331" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59281" e_stop="59805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC</genome_strand>
        <mrna_strand>TCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGACAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAATAACCACCAAAGGAGCCAAGTGAAATTGAGATGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGATTGAGTGCTAGCAGTGAGACTATGGCGGGAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730574" ref_strand="+" ref_description="SGN-E730574 [LA24CB09]">
      <seq>catttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtgggcaagtccatttcaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58982" stop="61099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59282" g_stop="59805" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="720" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60799" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="887" r_length="167" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E730574" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59282" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCA</genome_strand>
        <mrna_strand>CATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGGCAAGTCCATTTCAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726809" ref_strand="+" ref_description="SGN-E726809 [LA12DE09]">
      <seq>tttcatatttacaaaaaatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccagacacagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58984" stop="61072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59284" g_stop="59805" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="718" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60772" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="857" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E726809" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59284" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTC</genome_strand>
        <mrna_strand>TTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCC-AGACACAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727512" ref_strand="+" ref_description="SGN-E727512 [LA14DF11]">
      <seq>ccgtccagggccctttnatatttanaaaaaatagnattntgccctttatctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58982" stop="60981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59284" g_stop="59805" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="535" r_length="522" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="731" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60681" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="780" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E727512" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59284" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCA</genome_strand>
        <mrna_strand>TTTNATATTTANAAAAAATAGNATTNTGCCCTTTATCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701115" ref_strand="+" ref_description="SGN-E701115 [FA15AC09]">
      <seq>cacaatatagcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaaagttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="58995" stop="61178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59295" g_stop="59805" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="707" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60878" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="953" r_length="246" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E701115" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>953</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59295" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGG</genome_strand>
        <mrna_strand>CACAATATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAAGTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702411" ref_strand="+" ref_description="SGN-E702411 [FA18CF01]">
      <seq>gcattctgctctttctctgtttcactctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtcaaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagttttctattttcaataacaatgcacaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59004" stop="61142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59304" g_stop="59805" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="698" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60842" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="908" r_length="210" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E702411" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59304" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCA</genome_strand>
        <mrna_strand>GCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCAAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTTCTATTTTCAATAACAATGCACAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723731" ref_strand="+" ref_description="SGN-E723731 [FC21CA12]">
      <seq>aatcggccgaattggttttcactctgacaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59023" stop="61122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59323" g_stop="59805" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="499" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="695" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60822" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="885" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E723731" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59323" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTT</genome_strand>
        <mrna_strand>TTTCACTCTGACAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284844" ref_strand="+" ref_description="SGN-E284844 [cLER-19-E6]">
      <seq>actctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaattacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59027" stop="60773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59327" g_stop="59805" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60473" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="611" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E284844" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59327" e_stop="59805"/>
          <exon e_start="60342" e_stop="60473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACC</genome_strand>
        <mrna_strand>ACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAATTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730688" ref_strand="+" ref_description="SGN-E730688 [LA24DE07]">
      <seq>ctctgaaaatggcttccatctcttctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagcccccttcaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctattttccaatacaatgcacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59028" stop="61141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59328" g_stop="59805" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="674" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60841" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="883" r_length="209" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E730688" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59328" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATC</genome_strand>
        <mrna_strand>CTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCCTTCAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTTCCAATACAATGCACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365678" ref_strand="+" ref_description="SGN-E365678 [cLPT-8-G5]">
      <seq>ctctcaatcaaattccttgcagaactctccaaattacatcccaatattcaaaacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaatttacaaacccaaaaccaaaattcactgctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataaggccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59052" stop="59934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59352" g_stop="59634" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E365678" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59352" e_stop="59634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGA</genome_strand>
        <mrna_strand>CTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTTACAAACCCAAAACCAAAATTCACTGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGGCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297361" ref_strand="+" ref_description="SGN-E297361 [cLEW-10-E1]">
      <seq>aacccacctccaaaatctcaactttacccatctcctccacgaatttcccatcaaaaacagaactacacagagcaatttcagtcaaagaattcacatacccaaaaccaaaattcacagctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataagtccgggtggagtagcggttgtggatgaagaaccaccaaacgagccaagtgaaattgagttgctgaagaagcaattggcggattcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59103" stop="59967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59403" g_stop="59667" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E297361" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59403" e_stop="59667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTA</genome_strand>
        <mrna_strand>AACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAACGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365254" ref_strand="+" ref_description="SGN-E365254 [cLPT-16-C3]">
      <seq>caatttcagtcaaagaatttacaaacccaaaaccaaaattcactgctcaagccacaaattacgacaaggaagatgagtgggggccggaagtggagaaaataaggccgggtggagtagcggttgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggccgattccttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggcgcaatctgcctctggttcgagttgaggagatttcacagactatcgattctgagagtttcactgtccaaaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59175" stop="60756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59475" g_stop="59805" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60456" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="446" r_length="115" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E365254" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59475" e_stop="59805"/>
          <exon e_start="60342" e_stop="60456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCT</genome_strand>
        <mrna_strand>CAATTTCAGTCAAAGAATTTACAAACCCAAAACCAAAATTCACTGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGGCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCCGATTCCTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGCGCAATCTGCCTCTGGTTCGAGTTGAGGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261692" ref_strand="+" ref_description="SGN-E261692 [cLEG-61-M24]">
      <seq>tgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtggtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagaacntggtttttggagttatgtttttcatcataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59296" stop="61286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59596" g_stop="59805" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="406" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60986" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="761" r_length="355" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E261692" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59596" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGT-GTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATA</genome_strand>
        <mrna_strand>TGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGAACNTGGTTTTTGGAGTTATGTTTTTCATCATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262306" ref_strand="+" ref_description="SGN-E262306 [cLEG-56-H23]">
      <seq>tgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcangtgtatttgtgttgatcaanggaaggcagtcccctcttgaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59296" stop="61244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59596" g_stop="59805" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="406" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60944" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="720" r_length="314" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E262306" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59596" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCA-GTGTATTTGTGTTGATCAA-GGAAGGCAGTCCCCTCTTGAAGCCT</genome_strand>
        <mrna_strand>TGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCANGTGTATTTGTGTTGATCAANGGAAGGCAGTCCCCTCTTGAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254252" ref_strand="+" ref_description="SGN-E254252 [cLEG-27-E6]">
      <seq>tgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataagggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttacctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtgcacattaaattcgaagaacgcataattggaacaccccagttgacagattccatcgtattgcctgagaacgtagaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcagtggccaagtccatttcaagtcaaccaccaattaagtttcctatatccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59296" stop="61175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59596" g_stop="59805" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="406" r_length="196" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60875" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="649" r_length="243" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E254252" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59596" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTT</genome_strand>
        <mrna_strand>TGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAAGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTACCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTGCAC...............................................................................................ATTAAATTCGAAGAACGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTAGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCAGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATATCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258992" ref_strand="+" ref_description="SGN-E258992 [cLEG-41-N14]">
      <seq>tgtggatgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59296" stop="60832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59596" g_stop="59805" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60532" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="401" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E258992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59596" e_stop="59805"/>
          <exon e_start="60342" e_stop="60532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCG</genome_strand>
        <mrna_strand>TGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332762" ref_strand="+" ref_description="SGN-E332762 [cTOD-18-O6]">
      <seq>atgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttangatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59301" stop="61236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59601" g_stop="59805" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="401" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60936" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="705" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E332762" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59601" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCT</genome_strand>
        <mrna_strand>ATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTANGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332683" ref_strand="+" ref_description="SGN-E332683 [cTOD-18-P4]">
      <seq>atgaagaaccaccaaaggagccaagtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattacattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaagagattgatctaggccccttcaaaggcttgattacttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59301" stop="61056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59601" g_stop="59805" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="401" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="60756" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="525" r_length="124" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E332683" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59601" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="60756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAG</genome_strand>
        <mrna_strand>ATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTACATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAGAGATTGATCTAGGCCCCTTCAAAGGCTTGATTACTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700803" ref_strand="+" ref_description="SGN-E700803 [FA14AH02]">
      <seq>gtgaaattgagttgctgaagaagcaattggcggattctttttatggaaccaataggggtttgagtgctagcagtgagactagggcggaaatcgttgaactcatcacacagcttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagagttaacattatgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59325" stop="61433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59625" g_stop="59805" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="377" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="61128" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="872" r_length="495" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="877" polyA_stop="899"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E700803" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59625" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="61128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACAT</genome_strand>
        <mrna_strand>GTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAG-AGTTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332829" ref_strand="+" ref_description="SGN-E332829 [cTOD-18-F16]">
      <seq>ttgagtcgaagaaccctaatccagcacctactgaagccttgactcttctcaacggcaaatggattcttgcgtacacatctttttcgggtttgttccccttgttgtcacggggcaatctgcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagtttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="59436" stop="61400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59736" g_stop="59805" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60342" g_stop="60537" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="266" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60633" g_stop="61100" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="735" r_length="469" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E332829" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59736" e_stop="59805"/>
          <exon e_start="60342" e_stop="60537"/>
          <exon e_start="60633" e_stop="61100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGCGTAAGTTCTTGATATTTTTTTTTTTGGTTGAATTATGTAGTGTGAATTCACTCACATGACCAATTGCTTCACTAGCTTGCAATTTTTTATTTGGTAATTACATCTTTTATTATTTTATTTGTTATGCTCTTAGCAATCGAATTAATTTATTAATTTAAAAACTATAGTAGTTTGCGTATGGGATTAAAACAGTCAGAGTATGAAAAGGAAAGATAAATGAAAGCCTTGTTGCAAACTGGAAGTACTAGTGATCAAAAGTTCAAATTTTTTGGTGCTAACTACCACAGCTACGTAAATATATTGAAGGAATTTCAATCATGACTGTGGCCACATATGTTGCCACGAACATATGACAAATATATGTCCAGTGTCCACTCTTAATTTTCGAATGTTTCTTGAGATGAACCTTATATGAGCATCACTTTCTTAGTCATGAGAATTCAGGTGGCATCATTTCGCTATCAAGAATGTTAAATGTTCTTGCTTCAGTGTATATTTGTCATGAACACTTGGAATTCTGTGCTGGAACACTGCAGGTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAG-TTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTAT</genome_strand>
        <mrna_strand>TTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699454" ref_strand="+" ref_description="SGN-E699454 [FA10AG02]">
      <seq>gcttctggttcgagttgaagagatttcacagactatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagccaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60090" stop="61351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60390" g_stop="60537" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60633" g_stop="61051" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="567" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E699454" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60390" e_stop="60537"/>
          <exon e_start="60633" e_stop="61051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTC</genome_strand>
        <mrna_strand>GCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCCAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429056" ref_strand="-" ref_description="SGN-E429056 [STM-51-I14]">
      <seq>gagatttcccagaccatcgattctgagagtttcactgtccaaaactctgttgtctttgctggacctttagctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgtgtccagattaaatttgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgtcgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcagtggccaagtccatttcaagtcaaccaccaattaagtttcctattaccaacaacaatgcacaatcatggctgctgacaacatacttggatgatgagcttaggatctccagaggagatgctggcagtgtttttgtgttgatcaaggaaggcagtcccctcttgaagccttaaagacgcatgtttttggagttgtgtatgtttttcataatataggagagcaaacagtagaaagtaaaaaaaaaaatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatttgtacttatggcatatgaaatactaaaatatagctgaaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60109" stop="61399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60409" g_stop="60537" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60633" g_stop="61091" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="590" r_length="461" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="617" polyA_stop="630"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E429056" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429056" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60409" e_stop="60537"/>
          <exon e_start="60633" e_stop="61091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGT-TTTTCATCATAATATAGGAGAGCAAACACTAGAAAGT--AAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATG</genome_strand>
        <mrna_strand>GAGATTTCCCAGACCATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGTGTCCAG...............................................................................................ATTAAATTTGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTCGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCAGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTACCAACAACAATGCACAATCATGGCTGCTGACAACATACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTTTTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTT-AAAGACGCATGTTTTTGGAGTTGTGTATGTTTTTCATAATATAGGAGAGCAAACAGTAGAAAGTAAAAAAAAAAATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATTTGTACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395775" ref_strand="+" ref_description="SGN-E395775 [TUS-17-H24](-)">
      <seq>acctttagctacaacttccattagtaccaatgccaaatttgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccattgtattgcctgagaaccccgaattcttgggacaaaagattgatttaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatgggtgctgacaacctacttggatgatgagcttaggatttccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggggggcaaaccctagaaagtaaaaaaatttgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaagttaacattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60171" stop="91714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60471" g_stop="60537" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60633" g_stop="61133" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="568" r_length="501" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61134" i_stop="62481" i_length="1348">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62482" g_stop="62512" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="599" r_length="31" r_score="0.742"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E395775" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60471" e_stop="60537"/>
          <exon e_start="60633" e_stop="61133"/>
          <exon e_start="62482" e_stop="62512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGAATCACTTAGCAGGAGACCATTCTAATTTAGAAGCCTTCATATGCTAATCGGAATAGGGTCAAAAATACCCTAAAATTATTTGAAATAACTCATATTTGTCCTTAAACTATATTTCGGTTCAAATTTATCTTTTTCGTCAAACTATTGGGTAATGGGTAAAATGTACTATTCTTATTAATGGAAGTTGTTAAATGTAATGTGGATGTCACATTACATGCCAATACTAATTACTCTTTTTTTTACCGTTACTTAGACTAAGTTCTTAAATTTTAACTATTCTTTTTTTCTTATTCATTATTTTCCAGAAAAGATTTCACCCCTTCTCCCTCATTAAAGTATGTTATTGAACAAGTATATTTTATCACCGCTAAACAAAAAACATTGAGCAATAGAATACCAACAATGTAACTTGATAAACCAATTTGCAAAATGAGGAACATTAACGGTGGAAGCAAATATTTGAACTTCATATAAAACATGTTGAGCACAAAACACACTACTCCAAATACAAACCCTCCGCTAGCTTGTTGTTTGTTAAAAATCAGCAAAGTTGGTCAATAGCCGAAAATAAACTAAAGTAAAGAACTAATGAAGAAATAGAGAAACTAGAAATAATTTCACAAAAGCTGGACATAAACCAAGTAAAGAACTAATGAAGAAATGCATTACTAAACATTAAGTAAAAAATGAAAATAAACATCACAAAATCTGGACAAAAACGAAACTTCAATCAGGGAGAAGCAGTGAAATTGATTCTGGAAAATAAGGAAATACGGGGAAAAAAAGAGTAATTGGGATTTAGGATTTATCTATGTGGCAGTGGAAAAAAAAAAGTAATTTATATTGGCATGCAGTATGACATTTAAAACTTTCGTTAATAAGAAAGGTATTTTTGACTCAATAGTTTAACGGAAAGGATAGACTTGAGTCAAAATATAGTTTAAGAATAAATATAAGTTATTTTGGATCGTTTAAGAAACTTTTTGACGTTTTTCCATATGCAGATGTACATTGAGTTTATTTCATCCGAGTTCAATTTTTACATTAACTATTTTTTTAATCATATTAGCTGAAGAGATGCTATACAATAAGAAATTAATATACGGAATAATTGTAATTTGTGCGGCTACATATCACAATATGAATTGGGAAATTGAATCGATGAACAGTACTAAATCTAGTTCAATTTGGATTTCTAGTTACGTTGAGGGGTATTAAAATTTCAAAAATCGATCAAATGCCCACCCTGGTAACTCTAGTGGTAACAAAAGGAAGAGAAATAAATGGAATAAAAATCACAAAATAACGGAATATGCTTTTTTCACCTTTCCACCAACCATCCCCTACCTAAAAAAGGATTGCAAAAAAAAAAAAGAATAA</genome_strand>
        <mrna_strand>ACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTTGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATTGTATTGCCTGAGAACCCCGAATTCTTGGGACAAAAGATTGATTTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGGTGCTGACAACCTACTTGGATGATGAGCTTAGGATTTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGGGGGCAAACCCTAGAAAGTAAAAAAATTTGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATTTTAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400360" ref_strand="-" ref_description="SGN-E400360 [cSTC-8-K22]">
      <seq>gctacaacttccattagtaccaatgccaaattngaagtcagaagtccaaaacgtgtccagattaaatttgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgtcgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcagtggccaagtccatttcaagtcaaccaccaattaagtttcctattaccaacaacaatgcacaatcatggctgctgacaacatacttggatgatgagcttaggatctccagaggagatgctggcagtgtnttttgtgttgatcaaggaaggcagtcccctcttgaagccttaaagacgcatgtttttggagttgtgtatgtttttcataatataggagagcaaacagtagaaagtaaaaaaaaaatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatttgtacttatggcatatgaaatattaaaatatagcttgaaagaagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60178" stop="61433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60478" g_stop="60537" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60633" g_stop="61091" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="521" r_length="461" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="569"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E400360" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400360" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60478" e_stop="60537"/>
          <exon e_start="60633" e_stop="61091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTA-TTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGT-TTTTCATCATAATATAGGAGAGCAAACACTAGAAAGT-AAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATG</genome_strand>
        <mrna_strand>GCTACAACTTCCATTAGTACCAATGCCAAATTNGAAGTCAGAAGTCCAAAACGTGTCCAG...............................................................................................ATTAAATTTGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTCGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCAGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTACCAACAACAATGCACAATCATGGCTGCTGACAACATACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTNTTTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTT-AAAGACGCATGTTTTTGGAGTTGTGTATGTTTTTCATAATATAGGAGAGCAAACAGTAGAAAGTAAAAAAAAAATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATTTGTACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302134" ref_strand="-" ref_description="SGN-E302134 [cLEW-19-H13]">
      <seq>ctacaacttccattagtaccaatgccaaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaaaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60179" stop="61348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60479" g_stop="60537" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60633" g_stop="61048" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="475" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="496"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E302134" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302134" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60479" e_stop="60537"/>
          <exon e_start="60633" e_stop="61048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAA</genome_strand>
        <mrna_strand>CTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732667" ref_strand="+" ref_description="SGN-E732667 [LB02DC03]">
      <seq>caaattcgaagtcagaagtccaaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60204" stop="61420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60504" g_stop="60537" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60633" g_stop="61132" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="534" r_length="500" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E732667" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60504" e_stop="60537"/>
          <exon e_start="60633" e_stop="61132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGA</genome_strand>
        <mrna_strand>CAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351139" ref_strand="+" ref_description="SGN-E351139 [cTOS-6-N8]">
      <seq>caaaacgcgtccagattaaattcgaagaaggcataattggaacaccccagttgacagattccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60327" stop="61422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60524" g_stop="60537" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60633" g_stop="61122" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="504" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E351139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60524" e_stop="60537"/>
          <exon e_start="60633" e_stop="61122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACGCGTCCAGGTAAGTATCTTCTTTAACATCTTTCTAGTCTTGTCATCGTTCCTTGTACTTTGATCATCATTTTAGTCTCATGTTATACGGTGTGTTTGGTTCAGATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGT</genome_strand>
        <mrna_strand>CAAAACGCGTCCAG...............................................................................................ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234580" ref_strand="+" ref_description="SGN-E234580 [cLEL-6-P10](-)">
      <seq>ccatcgtattgcctgagaacgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaagttaacatatgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60379" stop="61433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60679" g_stop="61132" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="474"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E234580" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60679" e_stop="61132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGA</genome_strand>
        <mrna_strand>CCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239294" ref_strand="+" ref_description="SGN-E239294 [cLEL-9-N21](-)">
      <seq>cgttgaattcttgggacaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60398" stop="61375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60698" g_stop="61075" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="397"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E239294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60698" e_stop="61075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTC</genome_strand>
        <mrna_strand>CGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218349" ref_strand="+" ref_description="SGN-E218349 [cLEL-18-C21](-)">
      <seq>cttgggacaaaaaattgatctaagccccttcaaaggcttgattacttcagtccaagacacagctttctcggtggccaagtccatttcaagtcaaccaaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctactttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaagttaacatatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60407" stop="61433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60707" g_stop="61132" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="444"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E218349" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60707" e_stop="61132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACC-ACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTAC-TTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGA</genome_strand>
        <mrna_strand>CTTGGGACAAAAAATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTTCTCGGTGGCCAAGTCCATTTCAAGTCAACCAACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235252" ref_strand="+" ref_description="SGN-E235252 [cLEL-6-P10](-)">
      <seq>acaaaagattgatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaaccctagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaagttaacatatgcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60413" stop="61433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60713" g_stop="61132" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="440"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E235252" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60713" e_stop="61132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGA</genome_strand>
        <mrna_strand>ACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACCCTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223952" ref_strand="+" ref_description="SGN-E223952 [cLEL-19-K23](-)">
      <seq>gatctaagccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccacccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaagttaacatatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60423" stop="61433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60723" g_stop="61132" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="412" polyA_stop="427"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E223952" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60723" e_stop="61132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCA-CCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGA</genome_strand>
        <mrna_strand>GATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219936" ref_strand="+" ref_description="SGN-E219936 [cLEL-24-G12](-)">
      <seq>gccccttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60430" stop="61420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60730" g_stop="61120" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="406"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E219936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60730" e_stop="61120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAA</genome_strand>
        <mrna_strand>GCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224327" ref_strand="+" ref_description="SGN-E224327 [cLEL-19-K23](-)">
      <seq>ccccttcaaaggcttgattacttcagtccaagacacagcttcccggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaagttaacatatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60431" stop="61433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60731" g_stop="61132" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="417"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E224327" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60731" e_stop="61132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGA</genome_strand>
        <mrna_strand>CCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCC-CGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356617" ref_strand="+" ref_description="SGN-E356617 [cTOS-21-N9]">
      <seq>ttcaaaggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaagttaacatatgaatcacttagcaggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60435" stop="61448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60735" g_stop="61146" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="413" polyA_stop="429"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E356617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60735" e_stop="61146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGAATCACTTAGCAGGA</genome_strand>
        <mrna_strand>TTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGAATCACTTAGCAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219792" ref_strand="+" ref_description="SGN-E219792 [cLEL-24-G12](-)">
      <seq>aggcttgattacttcagtccaagacacagcttcctcggtggccaagtccatttcaagtctaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60440" stop="61420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60740" g_stop="61120" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="396"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E219792" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60740" e_stop="61120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAA</genome_strand>
        <mrna_strand>AGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCTACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390619" ref_strand="+" ref_description="SGN-E390619 [TUS-47-G8]">
      <seq>ctcgagttttgttttctttttttttcatatgttaacttctttcaagctataatttaataatatgccataagtacagatcatgaggacaagccatctatagagtttgacttgaggaaaacttatttttagtttacatcatatttttttactttctagtgtttgctctcctatattatgatgaaaaacataactccaaaaacatgtgtcttttaaggcttcaagaggggactgccttccttgatcaacacaaatacactgccagcatctcctctggagatcctaagctcatcatccaagtaggttgtcttttttcatgattgtgcattgttattgaaaataggaaacttaattggtggttgacttgaaatggacttggccaccgaggaagctgtgtcttggactgaagtaatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="61433" stop="60444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61136" g_stop="60743" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="414" r_length="394" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E390619" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61136" e_stop="60743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCATATGTTAACTTCTTTCAAGCTATAATTTAATAATATGCCATAAGTACAGATCATGAGGACAAGCCATCTATAGAGTTTGACTTGAGGAAAACTTATTTTTAGTTTACATCATATTTTTTTACTTTCTAGTGTTTGCTCTCCTATATTATGATGAAAAACATAACTCCAAAAACATGTGTCTTTTAAGGCTTCAAGAGGGGACTGCCTTCCTTGATCAACACAAATACACTGCCAGCATCTCCTCTGGAGATCCTAAGCTCATCATCCAAGTAGGTTGTCAGCAGCCATGATTGTGCATTGTTATTGGAAATAGGAAACTTAATTGGTGGTTGACTTGAAATGGACTTGGCCACCGAGGAAGCTGTGTCTTGGACTGAAGTAATCAAG</genome_strand>
        <mrna_strand>TTTTTCATATGTTAACTTCTTTCAAGCTATAATTTAATAATATGCCATAAGTACAGATCATGAGGACAAGCCATCTATAGAGTTTGACTTGAGGAAAACTTATTTTTAGTTTACATCATATTTTTTTACTTTCTAGTGTTTGCTCTCCTATATTATGATGAAAAACATAACTCCAAAAACATGTGTCTTTTAAGGCTTCAAGAGGGGACTGCCTTCCTTGATCAACACAAATACACTGCCAGCATCTCCTCTGGAGATCCTAAGCTCATCATCCAAGTAGGTTGTCTTTTTTCATGATTGTGCATTGTTATTGAAAATAGGAAACTTAATTGGTGGTTGACTTGAAATGGACTTGGCCACCGAGGAAGCTGTGTCTTGGACTGAAGTAATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227388" ref_strand="+" ref_description="SGN-E227388 [cLEL-30-E16](-)">
      <seq>agtccaaaacacagcttcctcggtggccaagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccaaaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggccccctattaaattatagcttgaaagaaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60455" stop="61433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60755" g_stop="61135" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E227388" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60755" e_stop="61135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGAATC</genome_strand>
        <mrna_strand>AGTCCAAAACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAAAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCCCCCTATTAAATTATAGCTTGAAAGAAAATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227675" ref_strand="+" ref_description="SGN-E227675 [cLEL-30-E10](-)">
      <seq>caagtccatttcaagtcaaccaccaattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagctccaaagaagttaacatatgnnananaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60482" stop="61431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60782" g_stop="61148" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E227675" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60782" e_stop="61148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGAATCACTTAGCAGGAGA</genome_strand>
        <mrna_strand>CAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTCCAAAGAAGTTAACATATGNNANANAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227677" ref_strand="+" ref_description="SGN-E227677 [cLEL-30-E18](-)">
      <seq>aattaagtttcctatttccaataacaatgcacaatcatggctgctgacaacctacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaaccctagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60506" stop="61420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60806" g_stop="61120" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="316" polyA_stop="330"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E227677" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60806" e_stop="61120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAA</genome_strand>
        <mrna_strand>AATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACCCTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226201" ref_strand="+" ref_description="SGN-E226201 [cLEL-31-C15](-)">
      <seq>gtttcctatttccaataacaatgcacaatcatggctgctgacaaccntacttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaaaaaaaaccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60512" stop="61420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60812" g_stop="61120" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="319" polyA_stop="332"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E226201" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60812" e_stop="61120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACC-TACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAA</genome_strand>
        <mrna_strand>GTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCNTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223932" ref_strand="+" ref_description="SGN-E223932 [cLEL-19-I21](-)">
      <seq>ttcctatttccaataacaatgcacaatcatggctgctgacaacctaccttggatgatgagcttaggatctccagaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaaccctagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaagttaacatatgaatcacttagcaggagaccattctaatttagaagccttcatatgctaatcggaatagggtcaaaaataccctaaaattatttgaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60514" stop="61520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60814" g_stop="61220" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="409" polyA_stop="436"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E223932" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60814" e_stop="61220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTA-CTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGAATCACTTAGCAGGAGACCATTCTAATTTAGAAGCCTTCATATGCTAATCGGAATAGGGTCAAAAATACCCTAAAATTATTTGAAATAA</genome_strand>
        <mrna_strand>TTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACCTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACCCTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGAATCACTTAGCAGGAGACCATTCTAATTTAGAAGCCTTCATATGCTAATCGGAATAGGGTCAAAAATACCCTAAAATTATTTGAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224317" ref_strand="+" ref_description="SGN-E224317 [cLEL-19-I21](-)">
      <seq>atgatgagcttaggatctcccaaggagatgctggcagtgtatttgtgttgatcaaggaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaaccctagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaagttaacatatgaatcacttagcaggagaccattctaatttagaagccttcatatgctaatcggaatagggtcaaaaataccctaaaattatttgaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60565" stop="61520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60865" g_stop="61220" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="384"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E224317" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60865" e_stop="61220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGAATCACTTAGCAGGAGACCATTCTAATTTAGAAGCCTTCATATGCTAATCGGAATAGGGTCAAAAATACCCTAAAATTATTTGAAATAA</genome_strand>
        <mrna_strand>ATGATGAGCTTAGGATCTCCCAAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACCCTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGAATCACTTAGCAGGAGACCATTCTAATTTAGAAGCCTTCATATGCTAATCGGAATAGGGTCAAAAATACCCTAAAATTATTTGAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225913" ref_strand="+" ref_description="SGN-E225913 [cLEL-31-C15](-)">
      <seq>gctggcagtgtatttgtgttgatcaagtaaggcagtcccctcttgaagccttaaaagacacatgtttttggagttatgtttttcatcataatataggagagcaaacactagaaagtaaaaaaatatgatgtaaactaaaaataagttttcctcaagtcaaactctatagatggcttgtcctcatgatctgtacttatggcatattattaaattatagcttgaaagaaaaaaaaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="60594" stop="61420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60894" g_stop="61120" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="228" polyA_stop="249"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E225913" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60894" e_stop="61120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAA</genome_strand>
        <mrna_strand>GCTGGCAGTGTATTTGTGTTGATCAAGTAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316276" ref_strand="+" ref_description="SGN-E316276 [cTOA-23-D24]">
      <seq>tttggcctctcaagtctcaacttgttcactgctactcctcactaacccccattctcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtggggttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatttgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagagacagcaaagaagctcgatctagatggtcttgtcgtaattggtggagatgactgcaatacaaatgcttgtcttcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62420" stop="64676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62720" g_stop="62995" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="438" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="560" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="614" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64376" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="711" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E316276" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62720" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTG</genome_strand>
        <mrna_strand>TTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTGCAATACAAATGCTTGTCTTCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325851" ref_strand="+" ref_description="SGN-E325851 [cTOC-12-F10]">
      <seq>tttggcctctcaagtctcaacttgttcactgctactcctcactaacccccattctcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtggggttgaccccggagttcatttacccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62420" stop="64301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62720" g_stop="62995" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="438" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64001" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="550" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E325851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62720" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATA</genome_strand>
        <mrna_strand>TTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746633" ref_strand="+" ref_description="SGN-E746633 [GI|47104117]">
      <seq>gggcctctcaagtctcaacttgttcactgctactcctcactaacccccattctcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtggggttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatttgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagagacagcaaagaagctcgatctagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttattggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtgatggtagatgctcgatcaacaggaaaatactatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgtcacggattacactgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattcccgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgtcgtagatgaagctggtgtttggaaaaagaaacttactccccagtgccttgagctctttgagttgttgcccctagctattcaggaacaactgcttcttgagagagatccacacggcaatgtccaggttgcgaaaattgaaactgagaaaatgcttattcaaatggttgaaactgagttggatcagaggaagcagaagggtgcatataatgctcaatttaaaggacagtcccacttttttggttatgaaggaaggtgtggcttgccatccaattttgattctacatactgttacgcgttggggtatggtgcaggatcactgcttcaaagtgggaagacagggttgatatcatcggttggtaatttggctgctcctgttgaagaatggacggtaggtggaacagcactcactgcattgatggacgtagagaggagacatggcaagttcaagccagtgatcaagaaggctatggttgagcttggaggtgctccattcaagaaatttgcttcaaagagggaagaatgggctcttaacaaccgatacattaacccaggtcccattcaatttgttggtccagtggcgaataaagtaaaccacactttacttctggagttgggagtagatgcataggagggaggggatatatgaattgttgtgaaatacacttgttgtactatgattttttcgagggagaacgtaagcacttatcgcttatgtttaagttgtttttcggctaatgatctatgtgaaactcgaatcttgcttctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62423" stop="69569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62722" g_stop="62995" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="436" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="558" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="612" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="719" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="825" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="889" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="890" r_stop="978" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="979" r_stop="1110" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="67746" g_stop="67916" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1111" r_stop="1281" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="67990" g_stop="68105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1282" r_stop="1397" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="68216" g_stop="68327" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1398" r_stop="1509" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="68491" g_stop="68575" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1510" r_stop="1594" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="68680" g_stop="68724" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1595" r_stop="1639" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="68840" g_stop="68908" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1640" r_stop="1708" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="69050" g_stop="69266" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1709" r_stop="1925" r_length="217" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1926" polyA_stop="1952"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E746633" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1925</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62722" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67916"/>
          <exon e_start="67990" e_stop="68105"/>
          <exon e_start="68216" e_stop="68327"/>
          <exon e_start="68491" e_stop="68575"/>
          <exon e_start="68680" e_stop="68724"/>
          <exon e_start="68840" e_stop="68908"/>
          <exon e_start="69050" e_stop="69266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGGGTACTCTTCTTGCACGATCTTTCATTGCTTTACTTTCTGTTTGTGTCATACCATAACTTTATATTATTCGAAATAAGGTCTTAGTACTGACAATTGGTCAAACTTTGCAGTTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCGGTATGTGCTTCTTCTGCTATAAAATAGTTTAGTTCCAATTGTTTTATTAGATGCATTGTTATATTTTCCTGATTAGTGACTATTTGGACCTGTGCGACTCATTTCTGAATATCCTAAAATTCATACATCAGCTAACTCACTCTTGATTTTCCTTGTGTAATAGGTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATGGTACAACAACTCGTTCTTCCCTTCATTGATTTTCTACACAATAGACATGTCCTTGCTGCGTCATTTCATCTAATTCATACTCTAAATGTTTTTCAATTATACAGGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAGGTTAGAACTCTCGGATATAATATAACTTCTATCAAAACTGTTTGTTCTTACAGAGCGCAACTACAACCCATTCATGTTCAACCAAGTAGAAAACTAACTTGGAATGTTTATTCAGGTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAGGTATGTTGAGTTTGACCTTGGTTTATGAAGCAGCATTAGTTATTAATTATTATCGATAATTCTGCTCACCTTATTATATGACATATTTGGGGGAAAATGGAGCATTCAATCTCACCATCTCTTGTGGTTTTGTGAATACAGGTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAAC</genome_strand>
        <mrna_strand>GGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTCACGGATTACACTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG..............................................................................................................TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG...................................................................................................................................................................GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG........................................................................................................GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGGAG...................................................................................................................GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG.............................................................................................................................................GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299932" ref_strand="+" ref_description="SGN-E299932 [cLEW-11-E7]">
      <seq>tctcaacttgttcactgctactcctcactaacccccattctcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62434" stop="64257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62734" g_stop="62995" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="424" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="63957" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="492" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E299932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62734" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="63957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATG</genome_strand>
        <mrna_strand>TCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311541" ref_strand="+" ref_description="SGN-E311541 [cTOA-6-M3]">
      <seq>tctcaacttgttcactgctactcctcactaacccccattctcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62434" stop="64038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62734" g_stop="62995" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63738" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="363" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E311541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62734" e_stop="62995"/>
          <exon e_start="63638" e_stop="63738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATA</genome_strand>
        <mrna_strand>TCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316356" ref_strand="+" ref_description="SGN-E316356 [cTOA-25-E24]">
      <seq>tcaacttgttcactgctactcctcactaacccccattctcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtggggttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatttgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagagacagcaaagaagctcgatctagatggtcttgtcgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62436" stop="64634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62736" g_stop="62995" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="422" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="544" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="598" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64334" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="653" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E316356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62736" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAA</genome_strand>
        <mrna_strand>TCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342648" ref_strand="+" ref_description="SGN-E342648 [cTOF-7-H5]">
      <seq>tcaacttgttcactgctactcctcactaacccccattctcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtggggttgaccccngagttcatttacccatacagaaatcaggntggatttgatatgatttgcagtggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62436" stop="64448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62736" g_stop="62995" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="422" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="544" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64148" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="572" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E342648" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62736" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTA</genome_strand>
        <mrna_strand>TCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCNGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GNTGGATTTGATATGATTTGCAGTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313036" ref_strand="+" ref_description="SGN-E313036 [cTOA-14-I5]">
      <seq>tcaacttgttcactgctactcctcactaacccccattctgttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62436" stop="64068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62736" g_stop="62995" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63768" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="391" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E313036" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62736" e_stop="62995"/>
          <exon e_start="63638" e_stop="63768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCC</genome_strand>
        <mrna_strand>TCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTGTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323961" ref_strand="+" ref_description="SGN-E323961 [cTOC-3-M6]">
      <seq>tcaacttgttcactgctactcctcactaacccccattctcttatctgctccggcgattaccatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttcagtctccgggtaccggacgatatgctgccgtatacagtgaagttcaaaacagtcgttgagatcaccctcttcctctttcttctgttctcggaagccctttcacagtctacgatggtcctacttcatctgccggcggtcatccacaggagattgcacagctctgtccttccttatacggaccaccatctgactcattggtgcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62436" stop="63999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62736" g_stop="62995" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.86"/>
            <acceptor a_prob="0.934" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63699" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="322" r_length="62" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E323961" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62736" e_stop="62995"/>
          <exon e_start="63638" e_stop="63699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGAT</genome_strand>
        <mrna_strand>TCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTATCTGCTCCGGCGATTACCATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTCAGTCTCCGGGTACCGGACGATATGCTGCCGTATACAGTGAAGTTCAAAACAGTCGTTGAGATCACCCTCTTCCTCTTTCTTCTGTTCTCGGAAGCCCTTTCACAGTCTACGATGGTCCTACTTCATCTGCCGGCGGTCATCCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCACAGCTCTGTCCTTCCTTATACGGACCACCATCTGACTCATTGGTGCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339571" ref_strand="+" ref_description="SGN-E339571 [cTOE-16-M24]">
      <seq>aacttgttcactgctactcctcactaacccccattctcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtggggttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatttgcagtggtagggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62438" stop="64453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62738" g_stop="62995" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="420" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="542" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64153" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="575" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E339571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62738" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGAC</genome_strand>
        <mrna_strand>AACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATTTGCAGTGGTAGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417101" ref_strand="+" ref_description="SGN-E417101 [STM-24-N7]">
      <seq>cttcttcactgctactcctcactaacccccaaaacaactcttctcctctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62440" stop="64617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62740" g_stop="62995" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="422" r_length="162" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="544" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="598" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64317" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="636" r_length="38" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E417101" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62740" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTCACTGCTACTCCTCACTAACCCCC---ATT-CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCT</genome_strand>
        <mrna_strand>CTTCTTCACTGCTACTCCTCACTAACCCCCAAAACAACTCTTCTCCTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348410" ref_strand="+" ref_description="SGN-E348410 [cTOF-27-H6]">
      <seq>ttgttcactgctactcctcactaacccccattctcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctgggatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcangggtggaccagctggagtcatgaagggaaagtatgtgggggntgacccccgagttcatttacccatacagaaatcagggtggatttgatatgatttgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagagacagcaaagaagctcgatctagatggtctttgtcgtaattggtgggagatgactccaatacaaatggcttgtcttcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62441" stop="64676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62741" g_stop="62995" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="417" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="540" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="594" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64376" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="694" r_length="100" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E348410" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62741" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGT-GGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTC-TTGTCGTAATTGGT-GGAGATGACTCCAATACAAAT-GCTTGTCTTCTTGCTG</genome_strand>
        <mrna_strand>TTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGGATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCANGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGGNTGACCCCCGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTTGTCGTAATTGGTGGGAGATGACTCCAATACAAATGGCTTGTCTTCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313551" ref_strand="+" ref_description="SGN-E313551 [cTOA-12-O2]">
      <seq>ttgttcactgctactcctcactaacccccattctcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtggggttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatttgcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62441" stop="64444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62741" g_stop="62995" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="417" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="539" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64144" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="563" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E313551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62741" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGT</genome_strand>
        <mrna_strand>TTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATTTGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301253" ref_strand="+" ref_description="SGN-E301253 [cLEW-24-E16]">
      <seq>ggttcactgctactcctcactaacccccagggtcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtggggttgaccccggagttcattttaccccatacagaaatcagggtggatttgatatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62443" stop="64440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62742" g_stop="62995" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="416" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="540" r_length="124" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64140" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="560" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E301253" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62742" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCA-TTTA-CCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTG</genome_strand>
        <mrna_strand>GGTTCACTGCTACTCCTCACTAACCCCCAGGGTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTTACCCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486439" ref_strand="+" ref_description="SGN-E486439 [cSTE-22-M3]">
      <seq>tgctactcctcactaacccccaaaacaactcttctcctctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttaccatacagaaatcagggtggatttgatatgatctgcagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62449" stop="64446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62749" g_stop="62995" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="413" r_length="162" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="534" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64146" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="560" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E486439" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62749" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACTCCTCACTAACCCCC-ATTC-TCT-TT-TCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGG</genome_strand>
        <mrna_strand>TGCTACTCCTCACTAACCCCCAAAACAACTCTTCTCCTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTA-CCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249619" ref_strand="+" ref_description="SGN-E249619 [cLEF-56-I24]">
      <seq>gctactcctcactaacccccgttctctgttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62450" stop="64257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62750" g_stop="62995" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="408" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="63957" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="476" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E249619" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62750" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="63957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATG</genome_strand>
        <mrna_strand>GCTACTCCTCACTAACCCCCGTTCTCTGTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455175" ref_strand="+" ref_description="SGN-E455175 [cSTS-25-F11]">
      <seq>ctaaccccaaaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcctcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggtcaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgatttagatggtcttgtcgtaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62456" stop="64637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62754" g_stop="62995" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="403" r_length="162" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="525" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="579" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64337" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="637" r_length="58" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E455175" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62754" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTG</genome_strand>
        <mrna_strand>CTAACCCCAAAACAAC-TCCTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCCTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGTCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624726" ref_strand="+" ref_description="SGN-E624726 [GI|169539]">
      <seq>cccccaaaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccgacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgatttagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttataggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtcatgatagatgctcgatcaacaggaaaatactatcattttgtgaggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggactacattgctgatgtggtctgcaagcgtgcagagtcaggttacaattatggagttattctcattcctgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgttgtggatgaagctggtgtttggaaaaagaaacttactcctcagtgccttgagctctttgagttgttgcccctagcaattcaggaacaactgcttcttgagagagatccacacggcaatgtccaggttgccaaaatcgaaactgagaaaatgcttattcaaatggttgaaactgagttggatcagaggaagcagaagggtgcatataatgctcaatttaaaggacagttccacttttttggttatgaaggaaggtgtggcttgccatccaattttgattctacatactgttacgcattggggtatggtgcaggatcactgcttcaaagtgggaagacagggttgatatcatcggttggtaatttggctgctcctgttgaagaattgaccgtaggtggaacagcactcactgcgttgatggacgtagagaggagacatggcaagttcaagccagtgatcaagaaggctatggttgagcttgaaggtgctccattcaagaaatttgcttcaaagagggaagaatgggctcttaacaaccgatacattaacccaggtcccattcaatttgttggtccagtggcaaataaagtaaaccacactttacttctggagttgggagtagatgcttaggagaggagatatgagttgttgtgaaatacatttgttgtactatgaggttttgcagggagaacgtaagcacttagcgcttatgtttaagttttttatcggcttatgatctttgtgaaactcgaatcttgcttttaacacatgcttgattacaagatattagtgtggcatttgaataatataacctcttctttttaattatgaagataaatgaaaaacgaaagacctttgcatcttaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62457" stop="69626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62757" g_stop="62995" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="397" r_length="160" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="519" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="573" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="680" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="786" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="850" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="939" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="940" r_stop="1071" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="67746" g_stop="67916" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1072" r_stop="1242" r_length="171" r_score="0.977"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="67990" g_stop="68105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1243" r_stop="1358" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="68216" g_stop="68327" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1359" r_stop="1470" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="68491" g_stop="68575" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1471" r_stop="1555" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="68680" g_stop="68724" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1556" r_stop="1600" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="68840" g_stop="68908" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1601" r_stop="1669" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="69050" g_stop="69318" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1670" r_stop="1933" r_length="264" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E624726" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>1942</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62757" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67916"/>
          <exon e_start="67990" e_stop="68105"/>
          <exon e_start="68216" e_stop="68327"/>
          <exon e_start="68491" e_stop="68575"/>
          <exon e_start="68680" e_stop="68724"/>
          <exon e_start="68840" e_stop="68908"/>
          <exon e_start="69050" e_stop="69318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGGGTACTCTTCTTGCACGATCTTTCATTGCTTTACTTTCTGTTTGTGTCATACCATAACTTTATATTATTCGAAATAAGGTCTTAGTACTGACAATTGGTCAAACTTTGCAGTTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCGGTATGTGCTTCTTCTGCTATAAAATAGTTTAGTTCCAATTGTTTTATTAGATGCATTGTTATATTTTCCTGATTAGTGACTATTTGGACCTGTGCGACTCATTTCTGAATATCCTAAAATTCATACATCAGCTAACTCACTCTTGATTTTCCTTGTGTAATAGGTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATGGTACAACAACTCGTTCTTCCCTTCATTGATTTTCTACACAATAGACATGTCCTTGCTGCGTCATTTCATCTAATTCATACTCTAAATGTTTTTCAATTATACAGGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAGGTTAGAACTCTCGGATATAATATAACTTCTATCAAAACTGTTTGTTCTTACAGAGCGCAACTACAACCCATTCATGTTCAACCAAGTAGAAAACTAACTTGGAATGTTTATTCAGGTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAGGTATGTTGAGTTTGACCTTGGTTTATGAAGCAGCATTAGTTATTAATTATTATCGATAATTCTGCTCACCTTATTATATGACATATTTGGGGGAAAATGGAGCATTCAATCTCACCATCTCTTGTGGTTTTGTGAATACAGGTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTT</genome_strand>
        <mrna_strand>CCCCCAAAACAAC-TCCTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACC-GACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCA--TGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATAGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTCATGATAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGAGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGACTACATTGCTGATGTGGTCTGCAAGCGTGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCTGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTTGTGGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCTCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCAATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCCAAAATCGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTTCCACTTTTTTGG..............................................................................................................TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCATTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG...................................................................................................................................................................GTTGGTAATTTGGCTGCTCCTGTTGAAGAATTGACCGTAGGTGGAACAGCACTCACTGCGTTGATGGACGTAGAGAGGAGACATG........................................................................................................GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG...................................................................................................................GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG.............................................................................................................................................GTCCCATTCAATTTGTTGGTCCAGTGGCAAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCTTAGGA--GA--GGAGATATGAGTTGTTGTGAAATACATTTGTTGTACTATGAGGTTTTGCAGGGAGAACGTAAGCACTTAGCGCTTATGTTTAAGTTTTTTATCGGCTTATGATCTTTGTGAAACTCGAATCTTGCTTTTAACACATGCTTGATTACAAGA-TATTAGTGTGGCATTTGAATAATATAACCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480975" ref_strand="+" ref_description="SGN-E480975 [cSTD-16-C11]">
      <seq>cccaaaacaactcttctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgctatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaaatatgtggtgttgaccccggagttcatttacccatacagaaatcanggtggatttgatatgatctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62467" stop="64442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62757" g_stop="62995" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="400" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="522" r_length="122" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64142" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="544" r_length="22" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E480975" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62757" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCA</genome_strand>
        <mrna_strand>CCCA-AAACAACTCTTCTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGCTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAATATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAN.............................................................................................................GGTGGATTTGATATGATCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212610" ref_strand="+" ref_description="SGN-E212610 [cLEC-74-L8]">
      <seq>actaacccccattctcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtggggttgaccccggagttcatttacccatacagaaatcagggtgggatttgatatgatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62460" stop="64441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62760" g_stop="62995" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="398" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="520" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64141" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="542" r_length="22" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E212610" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62760" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGT-GGATTTGATATGATTTGC</genome_strand>
        <mrna_strand>ACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGGATTTGATATGATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480197" ref_strand="+" ref_description="SGN-E480197 [cSTD-13-I7]">
      <seq>aaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatggtatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaagggtggaccaactggggtcatgaaaggaaagtatgtggtgttgaccccggagttcatttacccataccgaaatcaaggtggatttgatattatctgcaagggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgatttagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttataggatgcccgaaaaccatagatggtgacttaaaatcgaaagaagttcccacaagtttttggctttgatacggcatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62463" stop="64912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62763" g_stop="62995" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="394" r_length="162" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="516" r_length="122" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="570" r_length="54" r_score="0.926"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="677" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64509" g_stop="64612" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="782" r_length="105" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E480197" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62763" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAG-TTTTGGCTTTGATACGGCATGCA</genome_strand>
        <mrna_strand>AAACAAC-TCCTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGGTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAAGGGTGGACCAACTGGGGTCATGAAAGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACCGAAATCAA.............................................................................................................GGTGGATTTGATATTATCTGCAAGGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATAGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAAGTTCCCACAAGTTTTTGGCTTTGATACGGCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480537" ref_strand="+" ref_description="SGN-E480537 [cSTD-14-C18]">
      <seq>aaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcanggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62463" stop="64481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62763" g_stop="62995" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="394" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="516" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="570" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64293" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="584" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E480537" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62763" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGA</genome_strand>
        <mrna_strand>AAACAAC-TCCTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAN.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338118" ref_strand="+" ref_description="SGN-E338118 [cTOE-13-A18]">
      <seq>cccattctcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62467" stop="64043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62767" g_stop="62995" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63743" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="335" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E338118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62767" e_stop="62995"/>
          <exon e_start="63638" e_stop="63743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGT</genome_strand>
        <mrna_strand>CCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456079" ref_strand="+" ref_description="SGN-E456079 [cSTS-28-O20]">
      <seq>ctcgttcactgctactcctcactaaccccaaaacaactcttctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgctatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaaatatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacaaccaagaagctcgatttagatggtcttgttgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttataggatgcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62440" stop="64845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62771" g_stop="62995" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="264" r_length="225" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="426" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="548" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="602" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="709" r_length="107" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64509" g_stop="64545" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="746" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E456079" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62771" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCG</genome_strand>
        <mrna_strand>TTCTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGCTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAATATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAACCAAGAAGCTCGATTTAGATGGTCTTGTTGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATAGGATGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478601" ref_strand="+" ref_description="SGN-E478601 [cSTD-6-I1]">
      <seq>ctcgttcactgctactcctcactaaccccaaaacaactcttctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgctatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaaatatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaacaaccaagaagctcgatttagatggtcttgttgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaaattgaaaactcgggttataggatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62440" stop="64844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62771" g_stop="62995" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="264" r_length="225" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="426" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="548" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="602" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="708" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64509" g_stop="64544" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="744" r_length="36" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E478601" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62771" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCC</genome_strand>
        <mrna_strand>TTCTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGCTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAATATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGA-ACAACCAAGAAGCTCGATTTAGATGGTCTTGTTGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAAATTGAAAACTCGGGTTATAGGATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456284" ref_strand="+" ref_description="SGN-E456284 [cSTS-29-G5]">
      <seq>tgctactcctcactaaccccaaaacaactcttctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgctatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaaatatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacaaccaagaagctcgatttagatggtcttgttgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62449" stop="64680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62771" g_stop="62995" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="255" r_length="225" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="417" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="539" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="593" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64380" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="694" r_length="101" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E456284" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62771" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAA</genome_strand>
        <mrna_strand>TTCTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGCTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAATATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAACCAAGAAGCTCGATTTAGATGGTCTTGTTGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721486" ref_strand="+" ref_description="SGN-E721486 [FC14AC07]">
      <seq>ctgctactcctcactaacccccaaaacaactcttctcttttctgctccggcgatttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttcagttcacggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggggcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtggggttgacccccgagttcatttacccatacaaaaatcagggtggatttgatatgatttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62448" stop="64442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62771" g_stop="62995" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="257" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="419" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="541" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64142" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="563" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E721486" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62771" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCA</genome_strand>
        <mrna_strand>TTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCAGTTCACGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGGGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCCGAGTTCATTTACCCATACAAAAATCAG.............................................................................................................GGTGGATTTGATATGATTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478685" ref_strand="+" ref_description="SGN-E478685 [cSTD-6-H7]">
      <seq>gttcactgctactcctcactaaccccaaaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgatttagatggtcttgtcgtaattggtgggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttataggatgcccgaaaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62443" stop="64852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="259" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="421" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="543" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="597" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="705" r_length="108" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.873" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64509" g_stop="64552" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="749" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E478685" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGT-GGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCA</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTGGTGGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATAGGATGCCCGAAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452468" ref_strand="+" ref_description="SGN-E452468 [cSTS-16-N16]">
      <seq>cctcactaaccccaaaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgatttagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62456" stop="64835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="246" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="408" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="530" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="584" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="691" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64509" g_stop="64536" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="719" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E452468" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATT</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480346" ref_strand="+" ref_description="SGN-E480346 [cSTD-13-J13]">
      <seq>gttcactgctactcctcactaaccccaaaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcaaggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagatacagccaagaagctcgatttagatggtcttgtcgtaattggtggagatgactccaatacanatgcttgtcttcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62443" stop="64676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="259" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="421" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="543" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="597" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64376" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="694" r_length="97" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E480346" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTG</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAA.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGATACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACANATGCTTGTCTTCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481501" ref_strand="+" ref_description="SGN-E481501 [cSTD-18-M16]">
      <seq>cttgttcactgctactcctcactaaccccaaaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggtcaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgatttagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62440" stop="64676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="262" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="424" r_length="162" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="546" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="600" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64376" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="697" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E481501" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTG</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGTCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449412" ref_strand="+" ref_description="SGN-E449412 [cSTS-6-M6]">
      <seq>cctcactaaccccaaaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgatttagatggtcttgtcgtaattggtgggagatgactccaatacaaatgcttgtcttcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62456" stop="64675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="246" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="408" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="530" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="584" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64375" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="681" r_length="97" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E449412" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGT-GGAGATGACTCCAATACAAATGCTTGTCTTCTTGCT</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTGGTGGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595012" ref_strand="+" ref_description="SGN-E595012 [38276]">
      <seq>gttcactgctactcctcactaaccccaaaacaacttcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgatttagatggtcttgtcgtaattggtggagatgactccatacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62443" stop="64659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="260" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="422" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="544" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="598" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64359" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="677" r_length="79" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E595012" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAA</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCC-ATACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561379" ref_strand="+" ref_description="SGN-E561379 [17362]">
      <seq>tcactgctactcctcactaaccccaaaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgatttagatggtcttgtcgtaattggtggagatgactccaatacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62445" stop="64659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="257" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="419" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="541" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="595" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64359" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="675" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E561379" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAA</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450320" ref_strand="+" ref_description="SGN-E450320 [cSTS-9-C17]">
      <seq>ttcactgctactcctcactaaccccaaaacaactcctcttctcttctcctgcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggtcaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcanggtggatctgatatgatctgcagtggtagggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62444" stop="64454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="258" r_length="223" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="420" r_length="162" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="542" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64154" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="576" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E450320" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACA</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCTGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGTCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAN.............................................................................................................GGTGGATCTGATATGATCTGCAGTGGTAGGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481577" ref_strand="+" ref_description="SGN-E481577 [cSTD-18-N15]">
      <seq>ctctctctctctctctctctctctctctctatcaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggtcaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcanggtggatttgatatgatctgcagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62440" stop="64447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="261" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="423" r_length="162" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="545" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64147" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="572" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E481577" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGT</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGTCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAN.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440830" ref_strand="+" ref_description="SGN-E440830 [cSTA-27-M19]">
      <seq>ctcctcactaaccccaaaacaactcctcttctcttctcccgcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaaggctccgggcaccggacgatatgctgccgtttacagcgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttatccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatttccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatatacccatacagaaatcaaggtggatttgatatgatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62456" stop="64441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="248" r_length="223" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="410" r_length="162" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="532" r_length="122" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64141" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="553" r_length="21" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E440830" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGC</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCCGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGGCTCCGGGCACCGGACGATATGCTGCCGTTTACAGCGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTATCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATTTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATATACCCATACAGAAATCAA.............................................................................................................GGTGGATTTGATATGATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E399662" ref_strand="+" ref_description="SGN-E399662 [cSTC-2-C7]">
      <seq>cttgttcactgctactcctcactaaccccaaaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcanggtggatttgatatgatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62440" stop="64440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="262" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="424" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="546" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64140" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="566" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E399662" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E399662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTG</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAN.............................................................................................................GGTGGATTTGATATGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400253" ref_strand="+" ref_description="SGN-E400253 [cSTC-6-C23]">
      <seq>cttgttcactgctactcctcactaaccccaaaacaactgctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggtcaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcacgggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62440" stop="64439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="262" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="424" r_length="162" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="546" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64139" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="565" r_length="19" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E400253" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTT</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGTCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCACGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439419" ref_strand="+" ref_description="SGN-E439419 [cSTA-12-G5]">
      <seq>aacccccaaaacaactcttctcctctgcggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62473" stop="64301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="237" r_length="223" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="399" r_length="162" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64001" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="511" r_length="112" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E439419" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATA</genome_strand>
        <mrna_strand>CTCTTCTCCTCTGCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439440" ref_strand="+" ref_description="SGN-E439440 [cSTA-12-K19]">
      <seq>gttcactgctactcctcactaaccccaaaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatttccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62443" stop="64257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="259" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="421" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="63957" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="489" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E439440" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="63957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATG</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATTTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480674" ref_strand="+" ref_description="SGN-E480674 [cSTD-14-H20]">
      <seq>ggtcactgctactcctcactaaccccaaaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggagttatctggaggccaagcccctggagggcctaatgatatctccggaattcttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccaactggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62443" stop="64253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="259" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="421" r_length="162" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.84"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="63953" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="485" r_length="64" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E480674" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="63953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGT</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGAGTTATCTGGAGGCCAAGCCCCTGGAGGGCCTAATGATATCTCCGGAATTCTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAACTGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447102" ref_strand="+" ref_description="SGN-E447102 [cSTA-24-D9]">
      <seq>gctactcctcactaaccccaaaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatttccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62456" stop="64243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="252" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="414" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="63943" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="468" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E447102" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="63943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGAC</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATTTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447030" ref_strand="+" ref_description="SGN-E447030 [cSTA-24-M11]">
      <seq>gctactcctcactaaccccaaaacaactcctcttctcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccggtgctatcacccctttactcttacctctgttcttcgaaaccctttcaaagtccgcgatggccctcctttatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatttccggaatttttgattacttgcagactcattgcaagggaagcacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62456" stop="64224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="252" r_length="223" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="414" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="63924" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="449" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E447030" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="63924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATG</genome_strand>
        <mrna_strand>CTCTTCTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGGTGCTATCACCCCTTTACTCTTACCTCTGTTCTTCGAAACCCTTTCAAAGTCCGCGATGGCCCTCCTTTATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATTTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400483" ref_strand="+" ref_description="SGN-E400483 [cSTC-14-E11]">
      <seq>ctcttgtcttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccatatgagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62473" stop="64002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62773" g_stop="62995" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63702" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="288" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E400483" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62773" e_stop="62995"/>
          <exon e_start="63638" e_stop="63702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGAT</genome_strand>
        <mrna_strand>CTCTTGTCTTCTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706907" ref_strand="+" ref_description="SGN-E706907 [FA31CA12]">
      <seq>cttttctgctccggcgatttcatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccgttaagtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttcgttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggactaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaatacgagtggtgttatctggaggccaggctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcgagggaagcacaatgtatggattcaggggtggaccatctggagtcatgaagggaaagtatgtggggttgaccccggagttcatttacccatacagaaatcacggtggatttgatatgatttgcagtggtagggacaagattgacactccagatcagtttaagctggctgaagagacagcaaagaagctcgatctacatggtcttgtcgtacttggtggagatgactccaatacaaatgcttgtcttcttgctgacaacttcacaagtaaaaatttgaaaactccggttattggatgcccgaaaaccatagatggagacttaaaatcgaaagagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62475" stop="64879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62775" g_stop="62995" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="382" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="504" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="558" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="665" r_length="107" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.873" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64509" g_stop="64579" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="736" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E706907" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62775" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGG</genome_strand>
        <mrna_strand>CTTTTCTGCTCCGGCGATTTC-ATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCGTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACTACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATACGAGTGGTGTTATCTGGAGGCCAGGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCGAGGGAAGCACAATGTATGGATTCAGGGGTGGACCATCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAC.............................................................................................................GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGACACTCCAGATCAG.........................................................................................................TTTAAGCTGGCTGAAGAGACAGCAAAGAAGCTCGATCTACATGGTCTTGTCGTACTTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGACAACTTCAC..........................................................................................................................AAGTAAAAATTTGAAAACTCCGGTTATTGGATGCCCGAAAACCATAGATGGAGACTTAAAATCGAAAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440550" ref_strand="+" ref_description="SGN-E440550 [cSTA-17-K4]">
      <seq>cttgttcactgctactcctcactaaccccaaaacaactcctgttctgttctccggcgatttcaatggccgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatttccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62440" stop="64271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62783" g_stop="62995" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="262" r_length="213" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="424" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="63971" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="506" r_length="82" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E440550" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62783" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="63971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGT</genome_strand>
        <mrna_strand>CTCCGGCGATTTCAATGGCCGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATTTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324368" ref_strand="+" ref_description="SGN-E324368 [cTOC-6-D13]">
      <seq>ttcaatggccgccgccgctctttctttgcttaacaacggagagttagcttcttccggggggtctccgggtaccggacgatatgctgccgtttacagtgaagttcaaaacagtcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62493" stop="64106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62793" g_stop="62995" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="365" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="63896" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="372" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E324368" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62793" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="63896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTT</genome_strand>
        <mrna_strand>TTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGGGGGGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448318" ref_strand="+" ref_description="SGN-E448318 [cSTS-2-J19]">
      <seq>cgccgccactctttctttgcttaacaacggagagttagcttcttccgtcaagtctccgggcaccggacgatatgctgccgtttacagtgaagttcaaaacagccgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgatttagatggtcttgtcgtaattggtggagatgactncaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttataggatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62502" stop="64844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62802" g_stop="62995" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="356" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="478" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="532" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="639" r_length="107" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.873" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64509" g_stop="64544" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="675" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E448318" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62802" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCC</genome_strand>
        <mrna_strand>CGCCGCCACTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTCAAGTCTCCGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGCCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTGGTGGAGATGACTNCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATAGGATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581726" ref_strand="+" ref_description="SGN-E581726 [7353]">
      <seq>tcttccgtcaagtctccggggcaccggacgatatgctgccgtttacagtgaagttcaaaacaggcgtttagatcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggccctccgtcatctgccgccggtcacccagaggagattgccaaagctttttccttccttatacggacaaccatggtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62542" stop="64030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62842" g_stop="62995" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.934" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63730" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="250" r_length="95" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E581726" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62842" e_stop="62995"/>
          <exon e_start="63638" e_stop="63730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCGTTAAGTCTCCGGG-TACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTG-CAAAGCTTTTTCCTTCCTTATACGGACAACCAT-CTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCT</genome_strand>
        <mrna_strand>TCTTCCGTCAAGTCTCCGGGGCACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGGCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCGTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCCAAAGCTTTTTCCTTCCTTATACGGACAACCATGGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333520" ref_strand="+" ref_description="SGN-E333520 [cTOD-20-P20]">
      <seq>tcaccctcttcctcttccttctgttctcggaagccctttcaaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtggggttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatttgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagagacagcaaagaagctcgatctagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttattggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtgatggtagatgctcgatcaacaggaaaatactatcattgtaagttcactagccttatcatatgggtaggatcacttcatcatagcacttcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62613" stop="65619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62913" g_stop="62995" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="245" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="367" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="421" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="528" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="634" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65200" g_stop="65319" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="754" r_length="120" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E333520" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62913" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATAT-GGTAGGATCAACTTCATCATAGCACTTCTTAT</genome_strand>
        <mrna_strand>TCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGGTAGGATC-ACTTCATCATAGCACTTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698664" ref_strand="+" ref_description="SGN-E698664 [FA07AG12]">
      <seq>cgggaagccctttcaagtcgttgatggtcctccttcatctgccgccggtcatccagaggagattgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtggggttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatttgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagagacagcaaagaagctcgatctagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttattggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtgatggtagatgctcgatcaacaggaaaatactatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62641" stop="67859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62939" g_stop="62995" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="218" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="340" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="394" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="501" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="607" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="671" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="760" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67501" g_stop="67559" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="819" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E698664" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62939" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTG</genome_strand>
        <mrna_strand>CGGGAAGCCCTTTC-AAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599157" ref_strand="+" ref_description="SGN-E599157 [52139]">
      <seq>cggaagccctttcaaagtcgttgatggccctccttcatctgccgccggtcacccagaggagattgcaaagctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgatttagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacctcagaagtaaaaatttgaaaactcgggttataggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtcatgatagatgctcgatcaacaggaaaatactatcattttgtgaggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62640" stop="67257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62940" g_stop="62995" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="218" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="340" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="394" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="501" r_length="107" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.873" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="607" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="671" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66879" g_stop="66957" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="750" r_length="79" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E599157" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62940" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGAT</genome_strand>
        <mrna_strand>CGGAAGCCCTTTCAAAGTCGTTGATGGCCCTCCTTCATCTGCCGCCGGTCACCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACCTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATAGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTCATGATAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGAGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254860" ref_strand="+" ref_description="SGN-E254860 [cLEG-33-B4]">
      <seq>gttgatggtcctccttcatctgccgccggtcatccagaggagagtgcaaagctttttccttccttatacggacaaccatctgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaataggagtggtgttatctggaggccaagctcccggaggacataatgttatttctggaatttttgattatttgcagactcattgcaagggaagcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtggggttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatttgcagtggtagggacaacgattgagactcccaggaacgagtttaagcaagctgaagagacagcaaagaagctcgatctagatggtcttgtcgtaattggtggagatgactccaatacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="62659" stop="64658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62959" g_stop="62995" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63638" g_stop="63799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="199" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="321" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="379" r_length="58" r_score="0.833"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.80"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64280" g_stop="64358" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="458" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E254860" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62959" e_stop="62995"/>
          <exon e_start="63638" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAGGTCTTTTTACTGCATTCTTCCTAAATATTTTTTCCTCTAAATAGATCAAGTTTTACCTTAATAAATCAATTTCTGTACTGCTCTGCATTCCTGTTTAACTGTATTTCTAAGGTTACATTTTCCACCCGTAATAGATCAAGTTAATTCTGTATTCCTTTAACTATATATTCTTGCATAACATTATTTTTTTCCTGTAGCAGATCAAGTTACTTTACTGTTTTGCATTCGTTAGACTGTTTTCTATTGTACATCAATGCGTTAATTGTAATAGATCAAGTTGCTGTATGTATATTCATGTGTTATAATGTTTGTTTCATAATAGTCCAAGTGACCGTGATGTTTTGCGGGATCTCTCTTAACACTTATTTCAAGTGATGTGTAATGATTTCAGGTATATCCAAACATTACTTCAACTTCCAAATACTTCCTTTCCAACTTCAACCAAATAGTTTACAAACGCCAATTAAGGAGGATCAAATCTTGAAAAGTTTGATTTAAGAAGTTCATAAATTATAACGTAGAAGTTTACGGTTGCAAGTCGTTCTGCACCCTTCACTGGATAAACTTTATAGAGCCTTCTTTAGGAGCATGCTGTTGTTTATGATGTGTATGATAAATTTGAGGATGATTTGGTGATTGCAGAGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAA-GATTGAGACT-CCA-GAGC-AGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAA</genome_strand>
        <mrna_strand>GTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGAGTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG..........................................................................................ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATTTGCAGTGGTAGGGACAACGATTGAGACTCCCAGGAACGAG.........................................................................................................TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400284" ref_strand="+" ref_description="SGN-E400284 [cSTC-6-M13]">
      <seq>ctttttccttccttatacggacaaccatgtgtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggtcaagcccctggagggcataatgttatctccggaatttttgattacttgcagactcattgcaagggaagcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgatttagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttataggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="63352" stop="65529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63652" g_stop="63799" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="270" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="324" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="431" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="537" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65200" g_stop="65230" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="568" r_length="31" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E400284" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63652" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGG</genome_strand>
        <mrna_strand>CTTTTTCCTTCCTTATACGGACAACCATGTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGTCAAGCCCCTGGAGGGCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGGTTCAGGGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATAGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577394" ref_strand="+" ref_description="SGN-E577394 [35334]">
      <seq>gtttcattggtgcctgatgattctggggatgttgcgatgaatcaaatcttgaaaattggagtggtgttatctggaggccaagcccctggaggtcataatgttatctccggaatttttgattacttgcagactcattgcaagggcaagcacaatgtatgggttcagggtggaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgcatttagatggtcttgtcgtaattggtcggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttataggatgcccgaaaaccatagatggtgacttaaaaattcgaaagaggttcccacaagtttggcttttgatacggcatgcaagatatatgcagaaatgatttgggaatgtcctgataggatgcttcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="63382" stop="65541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63682" g_stop="63799" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63890" g_stop="64011" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="240" r_length="122" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="294" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="403" r_length="109" r_score="0.935"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.873" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="511" r_length="108" r_score="0.925"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65200" g_stop="65237" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="551" r_length="40" r_score="0.816"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E577394" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63682" e_stop="63799"/>
          <exon e_start="63890" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTGGTTAGTTCATCCTTGAGAACTTTATGTTAGTTCAATTATTGCAGATTTTTCTTTTTCTTCTTTTACTCAAATTTTGTATTTGGACGGTAGATTATTTGCAGACTCATTGCAAGGG-AAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCG-ATCTAGATGGTCTTGTCGTAATTGGT-GGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTT-AAAA-TCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGA-TTGGGAATGTGATGGTA-GATGC</genome_strand>
        <mrna_strand>GTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATTGGAGTGGTGTTATCTGGAGGCCAAGCCCCTGGAGGTCATAATGTTATCTCCGGAATTTTTG..........................................................................................ATTACTTGCAGACTCATTGCAAGGGCAAGCACAATGTATGGGTTCA-GGGTGGACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGCATTTAGATGGTCTTGTCGTAATTGGTCGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATAGGATGCCCGAAAACCATAGATGGTGACTTAAAAATTCGAAAGAGGTTCCCACAAGTTTGGCTTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTTGGGAATGTCCTGATAGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471765" ref_strand="+" ref_description="SGN-E471765 [cSTB-25-M4]">
      <seq>gaccagctggggtcatgaagggaaagtatgtggtgttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgatttagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttataggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtcatgatagatgctcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="63641" stop="65542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63941" g_stop="64011" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="125" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="232" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="338" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65200" g_stop="65242" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="381" r_length="43" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E471765" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63941" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGAT</genome_strand>
        <mrna_strand>GACCAGCTGGGGTCATGAAGGGAAAGTATGTGGTGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATAGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTCATGATAGATGCTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247125" ref_strand="+" ref_description="SGN-E247125 [cLEF-46-M19]">
      <seq>gaagggaaagtatgtggggttgaccccggagttcatttacgcatacagaaatcagggtggatttgatatgatttgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagagacagcaaagaagctcgatctagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttattggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="63657" stop="64917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63957" g_stop="64011" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64121" g_stop="64174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="109" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="216" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="322" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E247125" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63957" e_stop="64011"/>
          <exon e_start="64121" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAGGTATGTTGCCTAGCAGCTTTTTTCTGTTAACAAGATATTTTAGAACTTTAATCTGTCTCCCAATTCAACGTCCAGAACATTATTTACGAGTTCATATTCTTTCTTCTAGGGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG</genome_strand>
        <mrna_strand>GAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACGCATACAGAAATCAG.............................................................................................................GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369146" ref_strand="+" ref_description="SGN-E369146 [TUS-23-A6]">
      <seq>tgatttgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagagacagcaaagaagctcgatctagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttattggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtgatggtagatgctcgatcaacaggaaaatactatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattcccgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgtcgtagatgaagctggtgtttggaaaaagaaacttactccccagtgccttgagctctttgagttgttgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="63834" stop="68162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64134" g_stop="64174" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="148" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="254" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="318" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="407" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="539" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67746" g_stop="67862" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="656" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E369146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64134" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCC</genome_strand>
        <mrna_strand>TGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242022" ref_strand="+" ref_description="SGN-E242022 [cLED-27-B21]">
      <seq>tgatttgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagagacagcaaagaagctcgatctagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttattggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtgatggtagatgctcgatcaacaggaaaatactatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattcccgaaagacttatagatttcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="63834" stop="67927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64134" g_stop="64174" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="148" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="254" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="318" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="407" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67501" g_stop="67627" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="534" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E242022" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64134" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTC</genome_strand>
        <mrna_strand>TGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAAGACTTATAGATTTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240954" ref_strand="+" ref_description="SGN-E240954 [cLED-24-M16]">
      <seq>tgatttgcagtggtagggacaagattgagactccagagcagtttaagcaagctgaagagacagcaaagaagctcgatctagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttattggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtgatggtagatgctcgatcaacaggaaaatactatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="63834" stop="67858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64134" g_stop="64174" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="148" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="254" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="318" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="407" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67501" g_stop="67558" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="465" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E240954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64134" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCT</genome_strand>
        <mrna_strand>TGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478987" ref_strand="+" ref_description="SGN-E478987 [cSTD-8-C11]">
      <seq>caagattgagactccagagcagtttaagcaagctgaagaaacagccaagaagctcgatttagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttataggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtcatgatagatgctcgatcaacaggaaaatactatcattntgtgaggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggactacattgctgatgtggtctgcaagcgtgcagagtcaggttacaattattggagtattctcattccctgaagacttatagatttcattcctgaggttcagncactcattgcngaactaaatgaaatattggcacatgatgttgtggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="63853" stop="68099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64153" g_stop="64174" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="129" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="235" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="299" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="388" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="520" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67746" g_stop="67799" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="574" r_length="54" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E478987" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64153" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTA-TGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGAT</genome_strand>
        <mrna_strand>CAAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAAACAGCCAAGAAGCTCGATTTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATAGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTCATGATAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NTGTGAGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGACTACATTGCTGATGTGGTCTGCAAGCGTGCAGAGTCAGGTTACAATTATTGGAG-TATTCTCATTCCCTGAAGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGNCACTCATTGCNGAACTAAATGAAATATTGGCACATGATGTTGTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270975" ref_strand="+" ref_description="SGN-E270975 [cLEM-22-G21]">
      <seq>aagattgagactccagagcagtttaagcaagctgaagagacggcgggggaagctcgatctagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttattggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtgatggtagatgctcgatcaacaggaaaatactatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattcccgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgtcgtagatgaagctggtgtttggaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="63854" stop="68120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64154" g_stop="64174" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="129" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="235" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="299" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="388" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="520" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67746" g_stop="67820" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="595" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E270975" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64154" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGAGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGC-AAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAG</genome_strand>
        <mrna_strand>AAGATTGAGACTCCAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAGACGGCGGGGGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271132" ref_strand="+" ref_description="SGN-E271132 [cLEM-22-N5]">
      <seq>agagagagagcagtttaagcaagctgaagagacagcaaagaagctcgatctagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttattggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtgatggtagatgctcgatcaacaggaaaatactatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="63977" stop="67861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64161" g_stop="64174" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.714"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64280" g_stop="64386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="120" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="226" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="290" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="379" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67501" g_stop="67561" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="440" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E271132" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64161" e_stop="64174"/>
          <exon e_start="64280" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCCAGAGCAGGTACTCACCATATTCTATAATTATACGAACCTTCTATAATCTATCTAGCTATGCATATTACACACGAAAAAGTATTCTATTTAATGACCAATTCCATCATTTCAGTTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCA</genome_strand>
        <mrna_strand>AGA-GAGAGAGCAG.........................................................................................................TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487623" ref_strand="+" ref_description="SGN-E487623 [cSTE-26-I19]">
      <seq>ctcgatttagatggtcttgtcgtaattggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttataggatgcccgaaaaccatagatggtgatttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtcatgatagatgctcgatcaacaggaaaatactatcattttgtgaggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggactacattgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattcctgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgttgtggatgaagctggtgtttggaaaaagaaacttactcctcagtgccttgagctctttgagttgttgcccctagcaattcaggaacaactgcttcttgagagagatccacacggcaatgtccaggttgccaaaatcgaaactgagaaaatgcttattcaaatggttgaaactgagttggatcagaggaagcagaagggtgcatataatgctcaatttaaaggacagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="64010" stop="68394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64310" g_stop="64386" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="183" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="247" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="336" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="468" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67746" g_stop="67916" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="639" r_length="171" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67990" g_stop="68094" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="744" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E487623" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64310" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67916"/>
          <exon e_start="67990" e_stop="68094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCC</genome_strand>
        <mrna_strand>CTCGATTTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATAGGATGCCCGAAAACCATAGATGGTGATTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTCATGATAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGAGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGACTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCTGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTTGTGGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCTCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCAATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCCAAAATCGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272579" ref_strand="+" ref_description="SGN-E272579 [cLEM-21-B13]">
      <seq>ttggtggagatgactccaatacaaatgcttgtcttcttgctgagaacttcagaagtaaaaatttgaaaactcgggttattggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtgatggtagatgctcgatcaacaggaaaatactatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattcccgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgtcgtagatgaagctggtgtttggaaaaagaaacttactccccagtgccttgagctctttgagttgttgcccctagctattcaggaacaactgcttcttgagagagatccacacggcaatgtccaggttgcgaaaattgaaactgagaaaatgcttattcaaatggttgaaactgagttggatcagaggaagcagaagggtgcatataatgctcaatttaaaggacagtcccacttttttggttatgaaggaaggtgtggcttgccatccaattttgattctacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="64035" stop="68562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64335" g_stop="64386" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="158" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="222" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="311" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="443" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67746" g_stop="67916" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="614" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67990" g_stop="68105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="730" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68216" g_stop="68262" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="777" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E272579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64335" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67916"/>
          <exon e_start="67990" e_stop="68105"/>
          <exon e_start="68216" e_stop="68262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGGGTACTCTTCTTGCACGATCTTTCATTGCTTTACTTTCTGTTTGTGTCATACCATAACTTTATATTATTCGAAATAAGGTCTTAGTACTGACAATTGGTCAAACTTTGCAGTTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACT</genome_strand>
        <mrna_strand>TTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG..............................................................................................................TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464336" ref_strand="+" ref_description="SGN-E464336 [cPRO-17-P7]">
      <seq>gtccaatacaaatgcttgtcttcctgctgagaacttcagaagtaaaaatttgaaaactcgggttataggatgcccgaaaaccatagatggagacttaaaatctaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcataaatgattgggaatgtcatgatagatgctcgatcaacaggaaaatactatcattttgtgatgctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggactacattgctgatgtggtctgcaaacgtgcagagtcaggttacaattatggagttattctcattcctgaaggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="64049" stop="67913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64348" g_stop="64386" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.873" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64509" g_stop="64614" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="145" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="209" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="298" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67501" g_stop="67613" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="411" r_length="113" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E464336" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64348" e_stop="64386"/>
          <exon e_start="64509" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAGGTGACATAATGTGCCCAAAAATAAAATGAGAAATAAAAAAATTAGCAGTTGAAATGATTGTCTTTTTTTGATGTTTAATCAGTACTATTGCTGGGGCTAAATAAGTTGCTGTGTTTTTTCAGAAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACT</genome_strand>
        <mrna_strand>GTCCAATACAAATGCTTGTCTTCCTGCTGAGAACTTCAG..........................................................................................................................AAGTAAAAATTTGAAAACTCGGGTTATAGGATGCCCGAAAACCATAGATGGAGACTTAAAATCTAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCATAAATGATTGGGAATGTCATGATAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGATGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGACTACATTGCTGATGTGGTCTGCAAACGTGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCTGAAGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306162" ref_strand="+" ref_description="SGN-E306162 [cLEY-13-E17]">
      <seq>aaaatttgaaaactcgggttattggatgcccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtgatggtagatgctcgatcaacaggaaaatactatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattcccgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgtcgtagatgaagctggtgtttggaaaaagaaacttactccccagtgccttgagctctttgagttgttgcccctagctattcaggaacaactgcttcttgagagagatccacacggcaatgtccaggttgcgaaaattgaaactgagaaaatgcttattcaaatggttgaaactgagttggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="64214" stop="68347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64514" g_stop="64614" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="165" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="254" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="386" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67746" g_stop="67916" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="557" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67990" g_stop="68047" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="615" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E306162" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64514" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67916"/>
          <exon e_start="67990" e_stop="68047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATC</genome_strand>
        <mrna_strand>AAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454691" ref_strand="+" ref_description="SGN-E454691 [cSTS-24-G17]">
      <seq>ccgaaaaccatagatggtgacttaaaatcgaaagaggttcccacaagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtcatgatagatgctcgatcaacaggaaaatactatcattttgtgaggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatcctaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggactacattgctgatgtggtctgcaaacgcgcagagtcaggttacaattatggagttattctcattcctgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgttgtggatgaagctggtgtttggaaaaagaaacttactcctcagtgccttgagctctttgagttgttgcccctagcaattcaggaacaattgcttcttgagagagatccacacggcaatgtccaggttgccaaaatcgaaactgagaaaatgcttattcaaatggttgaaactgagttggatcagaggaagcagaagggtgcatataatgctcaatttaaaggacagtcccactttttttgttatgaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="64243" stop="68408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64543" g_stop="64614" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="136" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="225" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="357" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67746" g_stop="67916" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="528" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67990" g_stop="68105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="644" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68216" g_stop="68225" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="654" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E454691" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64543" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67916"/>
          <exon e_start="67990" e_stop="68105"/>
          <exon e_start="68216" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGGGTACTCTTCTTGCACGATCTTTCATTGCTTTACTTTCTGTTTGTGTCATACCATAACTTTATATTATTCGAAATAAGGTCTTAGTACTGACAATTGGTCAAACTTTGCAGTTATGAAGGA</genome_strand>
        <mrna_strand>CCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTCATGATAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGAGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCTAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGACTACATTGCTGATGTGGTCTGCAAACGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCTGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTTGTGGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCTCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCAATTCAGGAACAATTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCCAAAATCGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTTG..............................................................................................................TTATGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707059" ref_strand="+" ref_description="SGN-E707059 [FA31DG08]">
      <seq>caagttttggctttgatacggcatgcaagatatatgcagaaatgattgggaatgtgatggtagatgctcgatcaacaggaaaatactatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattcccgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgtcgtagatgaagctggtgtttggaaaaagaaacttactccccagtgccttgagctctttgagttgttgcccctagctattcaggaacaactgcttcttgagagagatccacacggcaatgtccaggttgcgaaaattgaaactgagaaaatgcttattcaaatggttgaaactgagttggatcagaggaagcagaagggtgcatataatgctcaatttaaaggacagtcccacttttttggttatgaaggaaggtgtggcttgccatccaattttgattctacatactgttacgcgttggggtatggtgcaggatcactgcttcaaagtgggaagacagggttgatatcatcggttggtaatttggctgctcctgntgaagaatggacggtaggtggaacagcactcactgcattgatggacgtagagaggagacatggcaagttcaagccagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="64286" stop="68998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64586" g_stop="64614" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="93" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="182" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="314" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67746" g_stop="67916" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="485" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67990" g_stop="68105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="601" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68216" g_stop="68327" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="713" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68491" g_stop="68575" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="798" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68680" g_stop="68698" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="817" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E707059" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64586" e_stop="64614"/>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67916"/>
          <exon e_start="67990" e_stop="68105"/>
          <exon e_start="68216" e_stop="68327"/>
          <exon e_start="68491" e_stop="68575"/>
          <exon e_start="68680" e_stop="68698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTTTGGCTTTGATACGGCATGCAAGGTAACTCTTTCTGATTAACACATTTTTCTTTCTCTATAAAGATTCAATATCTTTCGATTTGTATAAAAGAAACAGTCTTATAAAGTATAGAAAGTGAAGCTGTACGAATGTGTGTTAATCTGGATAATGATGTTAATGATTCAAGCTTACCATCAGCTAGTCTTAGCCATCAGCCTATCCCGTGTCATAGACTAATCTATGAGTATAAGACCCTTAAACACAAGATACTCACAACAGAAACCTTGTTTTTGGGCATGTACCCCAGTCTTGACTGGCTTCCGGTGGCTGGCATGATCATTTTTCTCATATTTTGTTACATATTTGATTCTGATTGGCAACAAAAGATCAGTTTCTCTTCAAAGAACAATTTCTCATTGCATAACATGCTCAATGCTAGAAAATGTTGAAAACCTTCAATACTTTGTTTGCAAATGCTACAATCTTCAAATTTGCTTAAGTCATAATATTTCCATACAGACTGATTTTCTCATTTTTCTGCTTGAAGTTTTAATTGATAATGCATGATCCTGTAGTGCATTATCCGGTGAAGGTTCATGTAATAATAGTTTCCATTTTGATTTATAGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGGGTACTCTTCTTGCACGATCTTTCATTGCTTTACTTTCTGTTTGTGTCATACCATAACTTTATATTATTCGAAATAAGGTCTTAGTACTGACAATTGGTCAAACTTTGCAGTTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCGGTATGTGCTTCTTCTGCTATAAAATAGTTTAGTTCCAATTGTTTTATTAGATGCATTGTTATATTTTCCTGATTAGTGACTATTTGGACCTGTGCGACTCATTTCTGAATATCCTAAAATTCATACATCAGCTAACTCACTCTTGATTTTCCTTGTGTAATAGGTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATGGTACAACAACTCGTTCTTCCCTTCATTGATTTTCTACACAATAGACATGTCCTTGCTGCGTCATTTCATCTAATTCATACTCTAAATGTTTTTCAATTATACAGGCAAGTTCAAGCCAGTGAT</genome_strand>
        <mrna_strand>CAAGTTTTGGCTTTGATACGGCATGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG..............................................................................................................TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG...................................................................................................................................................................GTTGGTAATTTGGCTGCTCCTGNTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG........................................................................................................GCAAGTTCAAGCCAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313957" ref_strand="+" ref_description="SGN-E313957 [cTOA-19-A16]">
      <seq>agatatatgcagaaatgattgggaatgtgatggtagatgctcgatcaacaggaaaatactatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattcccgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgtcgtagatgaagctggtgtttggaaaaagaaacttactccccagtgccttgagctctttgagttgttgcccctagctattcaagaacaactgcttcttgagagagatccacacggcaatgtccaggttgcgaaaattgaaactgagaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="64898" stop="68317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65198" g_stop="65263" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="155" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="287" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67746" g_stop="67916" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="458" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67990" g_stop="68017" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="486" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E313957" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65198" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67916"/>
          <exon e_start="67990" e_stop="68017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGC</genome_strand>
        <mrna_strand>AGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAAGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCGAAAATTGAAACTGAGAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480209" ref_strand="+" ref_description="SGN-E480209 [cSTD-13-M5]">
      <seq>ggcatgcaagatatatgcagaaatgattgggaatgtcatgatagatgctcgatcaacaggaaaatactatcattttgtgaggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggactacattgctgatgtggtctgcaagcgtgcagagtcaggttacaattatggagttattctcattcctgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgttgtggatgaagctggtgtttggaaaaagaaacttactcctcagtgccttgagctctttgagttgttgcccctagcaattcaggaacaactgcttcttgagagagatccacacggcaatgtccaggttgccaaaatcgaaactgagaaaatgcttattcaaatggttgaaactgagttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="64892" stop="68346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="74" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="163" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="295" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67746" g_stop="67916" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="466" r_length="171" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67990" g_stop="68046" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="523" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E480209" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67916"/>
          <exon e_start="67990" e_stop="68046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGAT</genome_strand>
        <mrna_strand>ATATATGCAGAAATGATTGGGAATGTCATGATAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGAGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGACTACATTGCTGATGTGGTCTGCAAGCGTGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCTGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTTGTGGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCTCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCAATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCCAAAATCGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248116" ref_strand="+" ref_description="SGN-E248116 [cLEF-47-N10]">
      <seq>tgcaagatatatgcagagatgattgggagtgtgatggtagatgctcgatcaacaggaaaatactatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattcccgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgtcgtagatgaagctggtgtttggaaaaagaaacttactccccagtgccttgagctctttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="64898" stop="68154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65200" g_stop="65263" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="70" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="159" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="291" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67746" g_stop="67854" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="400" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E248116" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65200" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGT</genome_strand>
        <mrna_strand>ATATATGCAGAGATGATTGGGAGTGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589328" ref_strand="+" ref_description="SGN-E589328 [42900]">
      <seq>tatatgcagaaatgattgggaatgtcatgatagatgctcgatcaacaggaaaatactatcattttgtgaggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggactacattgctgatgtggtctgcaagcgtgcagagtcaggttacaattatggagttattctcattcctgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgttgtggatgaagctggtgtttggaaaaagaaacttacctcctcagtgccttgagctctttgagttgttgcccctagcaattcaggaacaactgcttcttgagagagatccacacggcaatgtccaggttgccaaaatcgaaactgagaaaatgcttattcaaatggttgaaactgagttggatcagaggaagcagaagggtgcatataatgctcaatttaaaggacagtcccacttttttggttatgaaggaaggtgtggcttgccatccaattttgattctacatactgttaacgcattggggtatggtgcaggatcactgcttcaaagtgggaagacagggttgatatcatcggttggtaatttggctgctccctgttgaagaaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="64901" stop="68824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65201" g_stop="65263" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="152" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="284" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67746" g_stop="67916" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="456" r_length="172" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67990" g_stop="68105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="572" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68216" g_stop="68327" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="685" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68491" g_stop="68524" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="721" r_length="36" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E589328" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65201" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67916"/>
          <exon e_start="67990" e_stop="68105"/>
          <exon e_start="68216" e_stop="68327"/>
          <exon e_start="68491" e_stop="68524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTA-CTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGGGTACTCTTCTTGCACGATCTTTCATTGCTTTACTTTCTGTTTGTGTCATACCATAACTTTATATTATTCGAAATAAGGTCTTAGTACTGACAATTGGTCAAACTTTGCAGTTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTT-ACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCGGTATGTGCTTCTTCTGCTATAAAATAGTTTAGTTCCAATTGTTTTATTAGATGCATTGTTATATTTTCCTGATTAGTGACTATTTGGACCTGTGCGACTCATTTCTGAATATCCTAAAATTCATACATCAGCTAACTCACTCTTGATTTTCCTTGTGTAATAGGTTGGTAATTTGGCTGCT-CCTGTTGAAG-AATGGA</genome_strand>
        <mrna_strand>TATATGCAGAAATGATTGGGAATGTCATGATAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGAGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGACTACATTGCTGATGTGGTCTGCAAGCGTGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCTGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTTGTGGATGAAGCTGGTGTTTGGAAAAAGAAACTTACCTCCTCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCAATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCCAAAATCGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG..............................................................................................................TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTAACGCATTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG...................................................................................................................................................................GTTGGTAATTTGGCTGCTCCCTGTTGAAGAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264489" ref_strand="+" ref_description="SGN-E264489 [cLEG-67-E5]">
      <seq>gtagatgctcgatcaacaggaaaatactatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattccccaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgtcctacatgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="64930" stop="68106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65230" g_stop="65263" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615">
            <donor d_prob="0.836" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="123" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="255" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67746" g_stop="67806" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="316" r_length="61" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E264489" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65230" e_stop="65263"/>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTATCTCATGTCTCCTCATTTTAGGACAGGATTTTTGTGTAAAGTAAATTATTCATCAAGAACTGAAAATATACTATCTTTCTCTTACTAATGTCGTAATTGTATTAGAAATCGATCTTTTCCAAGCTACATGCTTCCCTTAGAAATTGGATCAGGCTATGGATTGGCCCCCCAGGGATTAGTTGAACTGGTAAATGTTGACACTTGTGACTTAGGGCACAGGTTTGAGCCCAAACAAGGCTGGTAGTATTTAAGTGGAGAAGAGAAGAGGGGCAGACACATTACCCAGAGTGTACAAGGCTGCCTTAGTCCTAAGGGTTGGTTCCAGATGGATTTCCTCAGTCAATTTTAAAAAATGGCTACGGGTTGGACCAATACTTCCATAAAGAGATCGGCCCTCTTATCTATTAGTGCTCTTACTCATGTCATCATTCTCTGTCAAAGTTTTCTTTGTCGCGAGTGTAGTTTTGGTGTTTATCATCTAGTTCCTGGTCGTGAAGGAGGGTTGCCGTTTATTGGTTAAAATTAGAGCGTATGAGAGGATCTGAGAGGCATTGAGCATACCTGACCGAAAGAGATCTGATGAATTGTTTTGCTTTACAATGAAGACTTGGACTTTCTTTTATGCATCTTTTCTCTTTCTTTCTCACTATAATTTTACAACTTACCTGTTTCTTTGATGTTATTTAATGGATTGGTACTTTTTCTTGATGATGAATTTTCACTTGACTTTTCTATATCTATTTGCTCTTTTTGTCTTTCCTTTTGGTTCCAGTAAGCAGTTATGCCTTTGATATTATCAAACTGTCGGTTGGTTGATCATTTTTGCTGCTCGGAGCTTCTTGTACTTACCTCATACAGGAAATAGCATGTTTCTTCAACCTAAATATATTTGAAAGAACAAACTTCAGATATTTGGATTTTGATTGCTTTCCGCATATGCCATGTGTCTCTACTGGTTTTGAATAGTTATATACTGTTCGTTTAGTTTGAGAAAATAAATGGTATTATATTCAAAATTATCCAATATATTGAAAAGCAAAGAGAAGTGGTGAGTCTCCACGATATTTATGCAGCAATTCTGTCATGAACTGAGCCTGTCATTTTGCCACTAGTCGAAGCTGAATTTTACTAGTGTCTTATGTATTCCACTCGGAGTTACCGTATGTTTTTTACTTTTTTTTTCTAGCATTTAATGTTTTACTAATTGCAATATCTACCAGTTTGAGTTTCACCTTCTGTTCATCTGATGTTTGTATATGAACTTATTTTCCCTACTGCTCATAAATTCAAAAAAAGAAAAAGAATAAAAGAAGGCTTAACTTTATTTTTACTAAACCATCATAGCTCTTGTATATTTAGTATCTGAAAATTCTATTATGTTGGTGGACTTCATTAGATATAATTGTGTTAAGGCATAAAAGTATTGCAGTTCAAATGTCACAAAAAAGGTCTTCATCGTACTTCATTGTGGTTTTCTTTGAGCAATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTG</genome_strand>
        <mrna_strand>GTAGATGCTCGATCAACAGGAAAATACTATCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCCAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCCTACATGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553560" ref_strand="+" ref_description="SGN-E553560 [cTSC-1-I1]">
      <seq>aattattatctgctcagttctctatttgctttgcatacatctgaaatatcataaccttgtctgttaactcattacagttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattcccgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgtcgtagatgaagctggtgtttggaaaaagaaacttactccccagtgccttgagctctttgagttgttgcccctagctattcaggaacaactgcttcttgagagagatccacacggcaatgtccaggttgcgaaaattgaaactgagaaaatgcttattcaaatggttgaaactgagttggatcagaggaagcagaagggtgcatataatgctcaatttaaaggacagtcccacttttttggttatgaaggaaggtgtggcttgccatccaattttgattctacatactgttacgcgttggggtatggtgcaggatcactgcttcaaagtgggaagacagggttgatatcatcggttggtaatttggctgctcctgttgaaaaatggacggtaggtggaacagcactcactgcattgatggacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="66502" stop="68860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66802" g_stop="66967" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="298" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67746" g_stop="67916" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="469" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="68105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="585" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68216" g_stop="68327" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="697" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68491" g_stop="68560" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="767" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E553560" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66802" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67916"/>
          <exon e_start="67990" e_stop="68105"/>
          <exon e_start="68216" e_stop="68327"/>
          <exon e_start="68491" e_stop="68560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGGGTACTCTTCTTGCACGATCTTTCATTGCTTTACTTTCTGTTTGTGTCATACCATAACTTTATATTATTCGAAATAAGGTCTTAGTACTGACAATTGGTCAAACTTTGCAGTTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCGGTATGTGCTTCTTCTGCTATAAAATAGTTTAGTTCCAATTGTTTTATTAGATGCATTGTTATATTTTCCTGATTAGTGACTATTTGGACCTGTGCGACTCATTTCTGAATATCCTAAAATTCATACATCAGCTAACTCACTCTTGATTTTCCTTGTGTAATAGGTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACG</genome_strand>
        <mrna_strand>AATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG..............................................................................................................TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG...................................................................................................................................................................GTTGGTAATTTGGCTGCTCCTGTTGAAAAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701787" ref_strand="+" ref_description="SGN-E701787 [FA16DG09]">
      <seq>actatcattttgtgcggctcatggggcgtgctgcttcacacattactctagagtgtgctctgcaaactcatccaaacgttactttgattggagaagaggtatttgcaaagaaactgactcttaagaatgttacggattacattgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattcccgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgtcgtagatgaagctggtgtttggaaaaagaaacttactccccagtgccttgagctctttgagttgttgcccctagctattcaggaacaactgcttcttgagagagatccacacggcaatgtccaggttgcgaaaattgaaactgagaaaatgcttattcaaatggttgaaactgagttggatcagaggaagcagaagggtgcatataatgctcaatttaaaggacagtcccacttttttggttatgaaggaaggtgtggcttgccatccaattttgattctacatactgttacgcgttggggtatggtgcaggatcactgcttcaaagtgggaagacagggttgatatcatcggttggtaatttggctgctcctgttgaagaatggacggtaggtggaacagcactcactgcattgatggacgtagagaggagacatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="66579" stop="68876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66879" g_stop="66967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="98" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67501" g_stop="67632" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="230" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67746" g_stop="67916" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="401" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="68105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="517" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68216" g_stop="68327" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="629" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68491" g_stop="68575" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="714" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E701787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66879" e_stop="66967"/>
          <exon e_start="67501" e_stop="67632"/>
          <exon e_start="67746" e_stop="67916"/>
          <exon e_start="67990" e_stop="68105"/>
          <exon e_start="68216" e_stop="68327"/>
          <exon e_start="68491" e_stop="68575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAGGTATCTTTCTTAATTTTAGCACTCCTCTTCTGCACCAAAAATCTTTTGAGAAAATATAAACCTTTGTTTATAGTCAAATAAGAAAAATACACGAGTACTTATCTTGAAAAAAGAGGGCATCATTTTTTAGAAAATGTTGCTCTACGTTGTAGATTTAAATTTCTTGGTGTGATTTGTAAAGGTTTACACTTCTGCTTTCAAATATGCTCTCGATCCAAGAGTGCAATTAAAGTTCATTGGAAAGAAAAATATGTGTTTTTTTGGGAGGTGTAGGGGGTTGATTTGTGGTCTACTCTTGTTACTTAATGCATACAACTTGGGGACAAAATTTAAAATGCAAGGAGGAAAGAAACCAAGATTATTTAAGCTGCACACAAAGGCAGTTAATTCTGTGAAATTGCTTTGGCATGCGCCATTGAGAAAGTGAAGAAGTTTTTGATCACTAATCTGTAGTTATACGATGCTTATATCACATTCCACTGGTTAACAAACTTCAAAACCAACTATATCTCAAACATGTCAAATTTTGGCAGGTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGGGTACTCTTCTTGCACGATCTTTCATTGCTTTACTTTCTGTTTGTGTCATACCATAACTTTATATTATTCGAAATAAGGTCTTAGTACTGACAATTGGTCAAACTTTGCAGTTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCGGTATGTGCTTCTTCTGCTATAAAATAGTTTAGTTCCAATTGTTTTATTAGATGCATTGTTATATTTTCCTGATTAGTGACTATTTGGACCTGTGCGACTCATTTCTGAATATCCTAAAATTCATACATCAGCTAACTCACTCTTGATTTTCCTTGTGTAATAGGTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG</genome_strand>
        <mrna_strand>TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG..............................................................................................................TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG...................................................................................................................................................................GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E580254" ref_strand="+" ref_description="SGN-E580254 [5497]">
      <seq>ctacattgctgatgtggtctgcaagcgcgcagagtcaggttacaattatggagttattctcattcctgaaggacttatagatttcattcctgaggttcagcaactcattgcggaactaaatgaaatattggcacatgatgttgtggatgaagctggtgtttggaaaaagaaacttactcctcaggtgccttgagctctttgagttgttgcccctagcaattcaggaacaactgcttcttgagagagatccacacggcacatgtccaggttgccaaaatcgaaactgagaacaatgcttattcaaactggttgaaactgagttggatcagaggaagcaccaacggtgcatataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="67240" stop="68373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67539" g_stop="67632" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67746" g_stop="67916" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="267" r_length="173" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67990" g_stop="68073" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="354" r_length="87" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E580254" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67539" e_stop="67632"/>
          <exon e_start="67746" e_stop="67916"/>
          <exon e_start="67990" e_stop="68073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAGGTAAAACAGCATATAACTTAACCTAATGTAGTCAATTAAAGTTCTGACCTTATACTGGTAAACCTTTTGGAAACTGGTTGTATGTGTTCCGACTTCGTAGTGGTGTTTTGCAGGTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCA-GTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCA-ATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAA-AATGCTTATTCAAA-TGGTTGAAACTGAGTTGGATCAGAGGAAGCA-GAAGGGTGCATATAAT</genome_strand>
        <mrna_strand>CTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCTGAAGGACTTATAGATTTCATTCCTGAG.................................................................................................................GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTTGTGGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCTCAGGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCAATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCACATGTCCAG.........................................................................GTTGCCAAAATCGAAACTGAGAACAATGCTTATTCAAACTGGTTGAAACTGAGTTGGATCAGAGGAAGCACCAACGGTGCATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591517" ref_strand="-" ref_description="SGN-E591517 [45231]">
      <seq>ctcattgcgggaactaaaattgaaatatttggccacatgatgttgtggatgaacctggtgtttggaaaaagaaacttactcctcagtgccttgagctctttgagttgttgcccctagcaattcaggaacaactgcttcttgagagagatccacacggcaatgtccaggttgccaaaatcgaaactgagaaaatgcttattcaaatggttgaaactgagttggatcagaggaagcagaagggtgcatataatgctcaatttaaaggacagtcccacttttttggttatgaaggaaggtgtggcttgccatccaattttgattctacatactgttacgcattggggtatggtgcaggatcactgcttcaaagtgggaagacagggttgatatcatcggttggtaatttggctgctcctgttgaagaatggaccgtaggtggaacagcactcactgcgttgatggacgtagagaggagacatggcaagttcaagccagtgatcaagaaggctatggttgagcttgaaggtgctccattcaagaaatttgcttcaaagagggaagaatgggctcttaacaaccgatacattaacccaggtcccattcaatttgttggtccagtggcaaataaagtaaaccacactttacttctggagttgggagtagatgcttaggagaggagatatgagttgttgtgaaatacatttgttgtactatgagtttttcgagggagaacgtaagcacttagcgcttatgtttaagttttttatcggcttatgatctttgtgaaactcgaatcttgcttttaacatatgcttgattacaagatattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="67455" stop="69588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67755" g_stop="67916" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67990" g_stop="68105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="283" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68216" g_stop="68327" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="395" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68491" g_stop="68575" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="480" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68680" g_stop="68724" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="525" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68840" g_stop="68908" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="594" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69050" g_stop="69290" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="831" r_length="237" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E591517" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591517" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67755" e_stop="67916"/>
          <exon e_start="67990" e_stop="68105"/>
          <exon e_start="68216" e_stop="68327"/>
          <exon e_start="68491" e_stop="68575"/>
          <exon e_start="68680" e_stop="68724"/>
          <exon e_start="68840" e_stop="68908"/>
          <exon e_start="69050" e_stop="69290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGC-GGAACT-AAAT-GAAATAT-TGG-CACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGGGTACTCTTCTTGCACGATCTTTCATTGCTTTACTTTCTGTTTGTGTCATACCATAACTTTATATTATTCGAAATAAGGTCTTAGTACTGACAATTGGTCAAACTTTGCAGTTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCGGTATGTGCTTCTTCTGCTATAAAATAGTTTAGTTCCAATTGTTTTATTAGATGCATTGTTATATTTTCCTGATTAGTGACTATTTGGACCTGTGCGACTCATTTCTGAATATCCTAAAATTCATACATCAGCTAACTCACTCTTGATTTTCCTTGTGTAATAGGTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATGGTACAACAACTCGTTCTTCCCTTCATTGATTTTCTACACAATAGACATGTCCTTGCTGCGTCATTTCATCTAATTCATACTCTAAATGTTTTTCAATTATACAGGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAGGTTAGAACTCTCGGATATAATATAACTTCTATCAAAACTGTTTGTTCTTACAGAGCGCAACTACAACCCATTCATGTTCAACCAAGTAGAAAACTAACTTGGAATGTTTATTCAGGTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAGGTATGTTGAGTTTGACCTTGGTTTATGAAGCAGCATTAGTTATTAATTATTATCGATAATTCTGCTCACCTTATTATATGACATATTTGGGGGAAAATGGAGCATTCAATCTCACCATCTCTTGTGGTTTTGTGAATACAGGTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTA</genome_strand>
        <mrna_strand>CTCATTGCGGGAACTAAAATTGAAATATTTGGCCACATGATGTTGTGGATGAACCTGGTGTTTGGAAAAAGAAACTTACTCCTCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCAATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCCAAAATCGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG..............................................................................................................TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCATTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG...................................................................................................................................................................GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACCGTAGGTGGAACAGCACTCACTGCGTTGATGGACGTAGAGAGGAGACATG........................................................................................................GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG...................................................................................................................GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG.............................................................................................................................................GTCCCATTCAATTTGTTGGTCCAGTGGCAAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCTTAGGA--GA--GGAGATATGAGTTGTTGTGAAATACATTTGTTGTACTATGAGTTTTTCGAGGGAGAACGTAAGCACTTAGCGCTTATGTTTAAGTTTTTTATCGGCTTATGATCTTTGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459648" ref_strand="+" ref_description="SGN-E459648 [cPRO-28-D5]">
      <seq>gttgcccctagcaattcaggaacaactgcttcttgagagagatccacacggcaatgtccaggttgccaaaatcgaaactgagaaaatgcttattcaaatggttgaaactgagttggatcagaggaagcagaagggtgcatataatgctcaatttaaaggacagtcccacttttttggttatgaaggaaggtgtggcttgccatccaattttgattctacatactgttacgcattggggtatggtgcaggatcactgcttcaaagtgggaagacagggttgatatcatcggttggtaatttggctgctcctgttgaagaatggaccgtaggtggaacagcactcactgcgttgatggacgtagagaggagacatggcaagttcaagccagtgatcaagaaggctatggttgagcttgaaggtgctccattcaagaaatttgcttcaaagagggaagaatgggctcttaacaaccgatacattaacccaggtcccattcaatttgttggtccagtggcaaataaagtaaaccacactttacttctggnagttggagtagatgcttaggagaggagatatgagttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="67556" stop="69433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67856" g_stop="67916" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67990" g_stop="68105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="177" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68216" g_stop="68327" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="289" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68491" g_stop="68575" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="374" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68680" g_stop="68724" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="419" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68840" g_stop="68908" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="488" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69050" g_stop="69151" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="586" r_length="98" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E459648" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67856" e_stop="67916"/>
          <exon e_start="67990" e_stop="68105"/>
          <exon e_start="68216" e_stop="68327"/>
          <exon e_start="68491" e_stop="68575"/>
          <exon e_start="68680" e_stop="68724"/>
          <exon e_start="68840" e_stop="68908"/>
          <exon e_start="69050" e_stop="69151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGGGTACTCTTCTTGCACGATCTTTCATTGCTTTACTTTCTGTTTGTGTCATACCATAACTTTATATTATTCGAAATAAGGTCTTAGTACTGACAATTGGTCAAACTTTGCAGTTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCGGTATGTGCTTCTTCTGCTATAAAATAGTTTAGTTCCAATTGTTTTATTAGATGCATTGTTATATTTTCCTGATTAGTGACTATTTGGACCTGTGCGACTCATTTCTGAATATCCTAAAATTCATACATCAGCTAACTCACTCTTGATTTTCCTTGTGTAATAGGTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATGGTACAACAACTCGTTCTTCCCTTCATTGATTTTCTACACAATAGACATGTCCTTGCTGCGTCATTTCATCTAATTCATACTCTAAATGTTTTTCAATTATACAGGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAGGTTAGAACTCTCGGATATAATATAACTTCTATCAAAACTGTTTGTTCTTACAGAGCGCAACTACAACCCATTCATGTTCAACCAAGTAGAAAACTAACTTGGAATGTTTATTCAGGTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAGGTATGTTGAGTTTGACCTTGGTTTATGAAGCAGCATTAGTTATTAATTATTATCGATAATTCTGCTCACCTTATTATATGACATATTTGGGGGAAAATGGAGCATTCAATCTCACCATCTCTTGTGGTTTTGTGAATACAGGTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTG</genome_strand>
        <mrna_strand>GTTGCCCCTAGCAATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG.........................................................................GTTGCCAAAATCGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG..............................................................................................................TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCATTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG...................................................................................................................................................................GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACCGTAGGTGGAACAGCACTCACTGCGTTGATGGACGTAGAGAGGAGACATG........................................................................................................GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG...................................................................................................................GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG.............................................................................................................................................GTCCCATTCAATTTGTTGGTCCAGTGGCAAATAAAGTAAACCACACTTTACTTCTGGNAGTTGGAGTAGATGCTTAGGA--GA--GGAGATATGAGTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577777" ref_strand="-" ref_description="SGN-E577777 [LE15DB09]">
      <seq>ggcaatgtccaggttgcgaaaattgaaactgagaaaatgcttattcaaatggttgaaactgagttggatcagaggaagcagaagggtgcatataatgctcaatttaaaggacagtcccacttttttggttataaagaaaggtgtggcttgccatccaattttgattctacatactgttacgcgttggggtatggtgcaggatcactgcttcaaagtgggaagacagggttgatatcatcggttggtaatttggctgctcctgttgaagaatggacggtaggtggaacagcactcactgcattgatggacgtagagaggagacatggcaagttcaagccagtgatcaagaaggctatggttgagcttgaaggtgctccattcaagaaatttgcttcaaagagggaagaatgggctcttaacaaccgatacattaacccaggtcccattcaatttgttggtccagtggcgaataaagtaaaccacactttacttctggagttgggagtagatgcataggagggaggggatatatgaattgttgtgaaatacacttgttgtactatgattttttcgagggagaacgtaagcacttatcgcttatgtttaagttgtttttcggctaatgatctatgtgaaactcgaatcttgcttttaacatatgcttgattacaagatttttaatgtggcatttgaataatataatctcttgttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="67683" stop="91714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67905" g_stop="67916" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67990" g_stop="68105" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="128" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68216" g_stop="68327" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="240" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68491" g_stop="68575" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="325" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68680" g_stop="68724" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="370" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68840" g_stop="68908" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="439" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69050" g_stop="69328" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="718" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69329" i_stop="69592" i_length="264">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69593" g_stop="69606" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="732" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E577777" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577777" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67905" e_stop="67916"/>
          <exon e_start="67990" e_stop="68105"/>
          <exon e_start="68216" e_stop="68327"/>
          <exon e_start="68491" e_stop="68575"/>
          <exon e_start="68680" e_stop="68724"/>
          <exon e_start="68840" e_stop="68908"/>
          <exon e_start="69050" e_stop="69328"/>
          <exon e_start="69593" e_stop="69606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATGTCCAGGTAAATATTGATCATGGTCAAAGTCGATTCTACTCTGTGCTACACAATTTGATAACAAGTGTTATTTCTGCAGGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGGGTACTCTTCTTGCACGATCTTTCATTGCTTTACTTTCTGTTTGTGTCATACCATAACTTTATATTATTCGAAATAAGGTCTTAGTACTGACAATTGGTCAAACTTTGCAGTTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCGGTATGTGCTTCTTCTGCTATAAAATAGTTTAGTTCCAATTGTTTTATTAGATGCATTGTTATATTTTCCTGATTAGTGACTATTTGGACCTGTGCGACTCATTTCTGAATATCCTAAAATTCATACATCAGCTAACTCACTCTTGATTTTCCTTGTGTAATAGGTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATGGTACAACAACTCGTTCTTCCCTTCATTGATTTTCTACACAATAGACATGTCCTTGCTGCGTCATTTCATCTAATTCATACTCTAAATGTTTTTCAATTATACAGGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAGGTTAGAACTCTCGGATATAATATAACTTCTATCAAAACTGTTTGTTCTTACAGAGCGCAACTACAACCCATTCATGTTCAACCAAGTAGAAAACTAACTTGGAATGTTTATTCAGGTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAGGTATGTTGAGTTTGACCTTGGTTTATGAAGCAGCATTAGTTATTAATTATTATCGATAATTCTGCTCACCTTATTATATGACATATTTGGGGGAAAATGGAGCATTCAATCTCACCATCTCTTGTGGTTTTGTGAATACAGGTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAATATTCTCTTCTTATGAAGGTAAATGAAAAAAAATACATAAGTAGAGCCTTTGCATATTATTACTGTGTTTATGTCGATTTGATGAATCTGGCACTCTTTTGTCAATTTGTTCTTGGACTACCGGTGCTTGGTGATAATAATCAGTATGAATACTTGTAATCTAACACTTTACATAAATGATATTAACTCAAATTGTCGATTTTGATGATATTCTTAAAAGAAAAACCTATACTATTACATGTTTAATTTGTTGTATTTACACAGCAAATTTGAAAAAA</genome_strand>
        <mrna_strand>GGCAATGTCCAG.........................................................................GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG..............................................................................................................TTATAAAGAAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG...................................................................................................................................................................GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG........................................................................................................GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG...................................................................................................................GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG.............................................................................................................................................GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAA........................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318249" ref_strand="+" ref_description="SGN-E318249 [cTOA-29-C6]">
      <seq>ggttgcgaaaattgaaactgagaaaatgcttattcaaatggttgaaactgagttggatcagaggaagcagaagggtgcatataatgctcaatttaaaggacagtcccacttttttggttatgaaggaaggtgtggcttgccatccaattttgattctacatactgttacgcgttggggtatggtgcaggatcactgcttcaaagtgggaagacagggttgatatcatcggttggtaatttggctgctcctgttgaagaatggacggtaggtggaacagcactcactgcattgatggacgtagagaggagacatggcaagttcaagccagtgatcaagaaggctatggttgagcttgaaggtgctccattcaagaaatttgcttcaaagagggaagaatgggctcttaacaaccgatacattaacccaggtcccattcaatttgttggtccagtggcgaataaagtaaaccacactttacttctggagttgggagtagatgcataggagggaggggatatatgaattgttgtgaaatacacttgttgtactatgattttttcgagggagaacgtaagcacttatcgcttatgtttaagtgtttttcggctaatgatctatgtgaaactcgaatcttgcnttttacatatgcttgattancagatttttaatgtggcatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="67689" stop="69603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67989" g_stop="68105" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68216" g_stop="68327" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="229" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68491" g_stop="68575" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="314" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68680" g_stop="68724" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="359" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68840" g_stop="68908" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="428" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69050" g_stop="69303" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="681" r_length="253" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E318249" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67989" e_stop="68105"/>
          <exon e_start="68216" e_stop="68327"/>
          <exon e_start="68491" e_stop="68575"/>
          <exon e_start="68680" e_stop="68724"/>
          <exon e_start="68840" e_stop="68908"/>
          <exon e_start="69050" e_stop="69303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGGGTACTCTTCTTGCACGATCTTTCATTGCTTTACTTTCTGTTTGTGTCATACCATAACTTTATATTATTCGAAATAAGGTCTTAGTACTGACAATTGGTCAAACTTTGCAGTTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCGGTATGTGCTTCTTCTGCTATAAAATAGTTTAGTTCCAATTGTTTTATTAGATGCATTGTTATATTTTCCTGATTAGTGACTATTTGGACCTGTGCGACTCATTTCTGAATATCCTAAAATTCATACATCAGCTAACTCACTCTTGATTTTCCTTGTGTAATAGGTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATGGTACAACAACTCGTTCTTCCCTTCATTGATTTTCTACACAATAGACATGTCCTTGCTGCGTCATTTCATCTAATTCATACTCTAAATGTTTTTCAATTATACAGGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAGGTTAGAACTCTCGGATATAATATAACTTCTATCAAAACTGTTTGTTCTTACAGAGCGCAACTACAACCCATTCATGTTCAACCAAGTAGAAAACTAACTTGGAATGTTTATTCAGGTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAGGTATGTTGAGTTTGACCTTGGTTTATGAAGCAGCATTAGTTATTAATTATTATCGATAATTCTGCTCACCTTATTATATGACATATTTGGGGGAAAATGGAGCATTCAATCTCACCATCTCTTGTGGTTTTGTGAATACAGGTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGA</genome_strand>
        <mrna_strand>GGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG..............................................................................................................TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG...................................................................................................................................................................GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG........................................................................................................GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG...................................................................................................................GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG.............................................................................................................................................GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAG-TGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCNTTTTACATATGCTTGATTANCAGATTTTTAATGTGGCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E564179" ref_strand="+" ref_description="SGN-E564179 [2428]">
      <seq>ccacttttttggttatgaaggaaggtgtggcttgccatccaattttgattctacatactgttacgcattggggtatggtgcaggatcactgcttcaaagtgggaagacagggttgatatcatcggttggtaatttggctgctcctgttgaagaatggaccgtnagtggaacagcactcactgcgttgatggacgtagagaggagacatggcaagttcaagccagtgatcaagaaggctatggttgagcttgaaggtgctccattcaagaaatttgcttcaaagagggaagaatgggctcttaacaaccgatacattaacccaggtcccattcaatttgttggtccagtggcaaataaagtaaaccacactttacttctggagttgggagtagatgcttagagaggagatatgagttgttgtgaaatacatttgttgtactatgagtttttcgagggagaacgtaagcacttaggcgctttatgtttaagtttttaatcgggttaatgatctttgtgaaactcgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="67915" stop="69503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68094" g_stop="68105" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68216" g_stop="68327" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="124" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68491" g_stop="68575" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="209" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104">
            <donor d_prob="0.971" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68680" g_stop="68724" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="254" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68840" g_stop="68908" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="323" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69050" g_stop="69254" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="526" r_length="203" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E564179" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68094" e_stop="68105"/>
          <exon e_start="68216" e_stop="68327"/>
          <exon e_start="68491" e_stop="68575"/>
          <exon e_start="68680" e_stop="68724"/>
          <exon e_start="68840" e_stop="68908"/>
          <exon e_start="69050" e_stop="69254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTTTTTGGGTACTCTTCTTGCACGATCTTTCATTGCTTTACTTTCTGTTTGTGTCATACCATAACTTTATATTATTCGAAATAAGGTCTTAGTACTGACAATTGGTCAAACTTTGCAGTTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCGGTATGTGCTTCTTCTGCTATAAAATAGTTTAGTTCCAATTGTTTTATTAGATGCATTGTTATATTTTCCTGATTAGTGACTATTTGGACCTGTGCGACTCATTTCTGAATATCCTAAAATTCATACATCAGCTAACTCACTCTTGATTTTCCTTGTGTAATAGGTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATGGTACAACAACTCGTTCTTCCCTTCATTGATTTTCTACACAATAGACATGTCCTTGCTGCGTCATTTCATCTAATTCATACTCTAAATGTTTTTCAATTATACAGGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAGGTTAGAACTCTCGGATATAATATAACTTCTATCAAAACTGTTTGTTCTTACAGAGCGCAACTACAACCCATTCATGTTCAACCAAGTAGAAAACTAACTTGGAATGTTTATTCAGGTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAGGTATGTTGAGTTTGACCTTGGTTTATGAAGCAGCATTAGTTATTAATTATTATCGATAATTCTGCTCACCTTATTATATGACATATTTGGGGGAAAATGGAGCATTCAATCTCACCATCTCTTGTGGTTTTGTGAATACAGGTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTA-TCGC-TTATGTTTAAGTTGTTTTTC-GGCTAATGATCTATGTGAAACTCGAAT</genome_strand>
        <mrna_strand>CCACTTTTTTGG..............................................................................................................TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCATTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG...................................................................................................................................................................GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACCGTNAGTGGAACAGCACTCACTGCGTTGATGGACGTAGAGAGGAGACATG........................................................................................................GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG...................................................................................................................GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG.............................................................................................................................................GTCCCATTCAATTTGTTGGTCCAGTGGCAAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCTTA-GA--GA--GGAGATATGAGTTGTTGTGAAATACATTTGTTGTACTATGAGTTTTTCGAGGGAGAACGTAAGCACTTAGGCGCTTTATGTTTAAGTTTTTAATCGGGTTAATGATCTTTGTGAAACTCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369145" ref_strand="+" ref_description="SGN-E369145 [TUS-23-A6](-)">
      <seq>tggggtatggggcaggatcactgcttcaaagtgggaaaacagggttgatatcatcggttggtaatttggctgctcctgttgaagaatggacggtaggtggaacagcactccctgcattgatggacgtaaagaggagacatggcaagttcaagccagtgatcaagaaggctatggttgagcttgaaggtgctccattcaagaaatttgcttcaaagagggaagaatgggctcttaacaaccgatacattaacccaggtcccattcaatttgttggtccagtggcgaataaagtaaaccaccctttacttctggagttgggagtaaatgcataggagggaggggatatatgaattgttgtgaaatacacttgttgtactatgattttttcgagggagaacgtaagcacttatcggttatgtttaagttgtttttcggctaatgatttatgtgaaactcgaatcttgcttttaacatatgcttgattacaagatttttaatgtggcatttgaataatataatctcttgttttaaaaatattctcttcttatgaaggtaaatgaaaaaaaatacataagtagagcctttgcatttttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="67972" stop="91714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68272" g_stop="68327" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68491" g_stop="68575" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="141" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68680" g_stop="68724" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="186" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68840" g_stop="68908" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="255" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69050" g_stop="69392" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="598" r_length="343" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69393" i_stop="69592" i_length="200">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69593" g_stop="69613" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="619" r_length="21" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E369145" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68272" e_stop="68327"/>
          <exon e_start="68491" e_stop="68575"/>
          <exon e_start="68680" e_stop="68724"/>
          <exon e_start="68840" e_stop="68908"/>
          <exon e_start="69050" e_stop="69392"/>
          <exon e_start="69593" e_stop="69613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCGGTATGTGCTTCTTCTGCTATAAAATAGTTTAGTTCCAATTGTTTTATTAGATGCATTGTTATATTTTCCTGATTAGTGACTATTTGGACCTGTGCGACTCATTTCTGAATATCCTAAAATTCATACATCAGCTAACTCACTCTTGATTTTCCTTGTGTAATAGGTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATGGTACAACAACTCGTTCTTCCCTTCATTGATTTTCTACACAATAGACATGTCCTTGCTGCGTCATTTCATCTAATTCATACTCTAAATGTTTTTCAATTATACAGGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAGGTTAGAACTCTCGGATATAATATAACTTCTATCAAAACTGTTTGTTCTTACAGAGCGCAACTACAACCCATTCATGTTCAACCAAGTAGAAAACTAACTTGGAATGTTTATTCAGGTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAGGTATGTTGAGTTTGACCTTGGTTTATGAAGCAGCATTAGTTATTAATTATTATCGATAATTCTGCTCACCTTATTATATGACATATTTGGGGGAAAATGGAGCATTCAATCTCACCATCTCTTGTGGTTTTGTGAATACAGGTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAATATTCTCTTCTTATGAAGGTAAATGAAAAAAAATACATAAGTAGAGCCTTTGCATATTATTACTGTGTTTATGTCGATTTGATGAATCTGGCACTCTTTTGTCAATTTGTTCTTGGACTACCGGTGCTTGGTGATAATAATCAGTATGAATACTTGTAATCTAACACTTTACATAAATGATATTAACTCAAATTGTCGATTTTGATGATATTCTTAAAAGAAAAACCTATACTATTACATGTTTAATTTGTTGTATTTACACAGCAAATTTGAAAAAAGGCAAAG</genome_strand>
        <mrna_strand>TGGGGTATGGGGCAGGATCACTGCTTCAAAGTGGGAAAACAGGGTTGATATCATCG...................................................................................................................................................................GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCCCTGCATTGATGGACGTAAAGAGGAGACATG........................................................................................................GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG...................................................................................................................GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG.............................................................................................................................................GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACCCTTTACTTCTGGAGTTGGGAGTAAATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGGTTATGTTTAAGTTGTTTTTCGGCTAATGATTTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAATATTCTCTTCTTATGAAGGTAAATGAAAAAAAATACATAAGTAGAGCCTTTGCATTTTTAAAAA........................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275349" ref_strand="-" ref_description="SGN-E275349 [cLEN-10-I21]">
      <seq>ggacgtagagaggagaccatggcaagttcaagccagtgatcaagaaggctatggttgagcttgaaggtgctccattcaagaaatttgcttcaaagagggaagaatgggctcttaacaaccgatacattaacccaggtcccattcaatttgttggtccagtggcgaataaagtaaaccacactttacttctggagttgggagtagattcataggagggaggggatatatgaattgttgtgaaatacacttgttgtactatgattttttcgagggagaacgtaagcacttatcgcttatgtttaagttgtttttcggctaatgatctatgtgaaactcgaatcttgcttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="68256" stop="91708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68556" g_stop="68575" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68680" g_stop="68724" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="66" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68840" g_stop="68908" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="135" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="69266" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="352" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69267" i_stop="69346" i_length="80">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.727" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69347" g_stop="69357" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="363" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E275349" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275349" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68556" e_stop="68575"/>
          <exon e_start="68680" e_stop="68724"/>
          <exon e_start="68840" e_stop="68908"/>
          <exon e_start="69050" e_stop="69266"/>
          <exon e_start="69347" e_stop="69357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGTAGAGAGGAGA-CATGGTACAACAACTCGTTCTTCCCTTCATTGATTTTCTACACAATAGACATGTCCTTGCTGCGTCATTTCATCTAATTCATACTCTAAATGTTTTTCAATTATACAGGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAGGTTAGAACTCTCGGATATAATATAACTTCTATCAAAACTGTTTGTTCTTACAGAGCGCAACTACAACCCATTCATGTTCAACCAAGTAGAAAACTAACTTGGAATGTTTATTCAGGTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAGGTATGTTGAGTTTGACCTTGGTTTATGAAGCAGCATTAGTTATTAATTATTATCGATAATTCTGCTCACCTTATTATATGACATATTTGGGGGAAAATGGAGCATTCAATCTCACCATCTCTTGTGGTTTTGTGAATACAGGTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAATATTCTCTTCTTATGAAGGTAAATGAAAA</genome_strand>
        <mrna_strand>GGACGTAGAGAGGAGACCATG........................................................................................................GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG...................................................................................................................GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG.............................................................................................................................................GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATTCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAAA................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460625" ref_strand="-" ref_description="SGN-E460625 [cPRO-31-J16]">
      <seq>agtgatcaagaaggctatggttgagcttgaaggtgctccattcaagaaatttgcttcaaagagggaagaatgggctcttaacaaccgatacattaacccaggtcccattcaatttgttggtccagtggcaaataaagtaaaccacactttacttctggagttgggagtagatgcttaggagaggagatatgagttgttgtgaaatacatttgtggtactatgagtttttcgagggagaacgtaagcacttagcgcttatgtttaagttttttatcggcttatgatctttgtgaaacttgaatcttgcttttaacatatgcttgattacaagatattagtgtggcatttgaataatataacctcttctttttaattatgaagataaatgaaaaccgaagtgcctttgcatcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="68393" stop="91714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68693" g_stop="68724" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68840" g_stop="68908" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="101" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69050" g_stop="69346" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="391" r_length="290" r_score="0.886"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69347" i_stop="71735" i_length="2389">
            <donor d_prob="0.045" d_score="0.72"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71736" g_stop="71769" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="424" r_length="33" r_score="0.529"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71770" i_stop="72590" i_length="821">
            <donor d_prob="0.546" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72591" g_stop="72610" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="444" r_length="20" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E460625" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460625" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68693" e_stop="68724"/>
          <exon e_start="68840" e_stop="68908"/>
          <exon e_start="69050" e_stop="69346"/>
          <exon e_start="71736" e_stop="71769"/>
          <exon e_start="72591" e_stop="72610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATCAAGAAGGCTATGGTTGAGCTTGAAGGTTAGAACTCTCGGATATAATATAACTTCTATCAAAACTGTTTGTTCTTACAGAGCGCAACTACAACCCATTCATGTTCAACCAAGTAGAAAACTAACTTGGAATGTTTATTCAGGTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAGGTATGTTGAGTTTGACCTTGGTTTATGAAGCAGCATTAGTTATTAATTATTATCGATAATTCTGCTCACCTTATTATATGACATATTTGGGGGAAAATGGAGCATTCAATCTCACCATCTCTTGTGGTTTTGTGAATACAGGTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAATATTCTCTTCTTATGAAGGTAAATGAAAAAAAATACATAAGTAGAGCCTTTGCATATTATTACTGTGTTTATGTCGATTTGATGAATCTGGCACTCTTTTGTCAATTTGTTCTTGGACTACCGGTGCTTGGTGATAATAATCAGTATGAATACTTGTAATCTAACACTTTACATAAATGATATTAACTCAAATTGTCGATTTTGATGATATTCTTAAAAGAAAAACCTATACTATTACATGTTTAATTTGTTGTATTTACACAGCAAATTTGAAAAAAGGCAAAGCGTATTTGGCATGAGACTGTGGTGATGAACTATCACATGAATCAGAGTTGGACAGTAAGACAGGTGAATAGTTGTTTGTAGACATAAGACTCCAAAAAGGGATTCACCCTTTTTTACCTTTCACCAAAATCCATGAAAAAAGGCATCAGAATTTCCACGTGCTCTACACATATATGGTCTCTCACTTTTCCGTTAATTTCTCCTTTACTTGCGACTTCAAATATTCTCCATTTCAATAAAATACTATCACTTATATTCTACATATCAAGTTAAAAGGATTTACAAACAACGATATCCCATTGTTTATATCAAAATTTAAACATATATTTGTAAATTTGTTGATTCAATATTTTCAAGTTGGTAAGAATTAGTTATTTCTTTCTATTACTAATGAGAAGGTTTTCATCTTGAGTGTGCAGAAACATTAGAAGAAATACATTTTGTCATACACCATATACCAAATTGTTGTAAATTATAATTCGGTATTATTATAGATTTTAAAATATAAAACAAGATTTTCCGACTAATAGTCCATCTTCTAGATGTTCTTTAAAACCAGCTTTGATTTGTGTTAGGGTTGTAGGGATGACTTCATTCTAAATAGAAGTATTTGATTCGAGGCTTATATATCTGTAATATGTGAACTAAAATTAATCAAATTTCAATATGAATATTGAATATCGAGTGGAATAAAAAAGATGAAGGAATATTGTCACCAACTGGAAGACTTTAATTGAACATACAAGTTATTTATACTTGTGATCTTATCAACCTACATCCTAAATAACTATTAGCAAGTCGCTAAGCATATAATATAAATAAAACATTTTCTCCTAATCCAAGTAAATTAATTATGTGACGTATCATTTTATTTGAAGAAGTCATACTTCGAATGGAGCAAAAGCTACGATGGTCAATGTCTGTTCTTACATATTTTTAATAGCAGTGCTTTTTCTAAGTACTTCCAGAATATGTTGAACTTTGTTTGAAATAAATAAACTTGTGTAATTGATGTCTACGTTCACATTAATGATTCTACTCACTTTGACTTTCATACCGTTTAATCAATAATTAAATTTATTATATTCGAGGACGATATAATAAAATTATTATTTTATAAATAAAAATAAATGGAGAGAATAATTACTAATTATATGAGTACGTAGTTACATTTTTAATAATTGGTGGGTATGAATCACAATCATAACAGCTTAAGAAAGATATGGTTCTCCTCCAACAAACAAAAAAGAGAAGACAAATTCGTTGTTAATTAGGACAACCTGGAACAGCAAGCTAACTATTCAATGGCTAAAACTTTTCTGGGAGTAAAAGCTTTAAAATTATACTCGAAAGTAAGTAGAGGCAGATTCAAAATTTGAAACTGATAGATTCGTTTAGTAATATCAATTCTCAAGTTAAATCTTTGAAACTGATAGATTCCTATAGTGATATTAGTTCTCAAGTTAATACTACAAACAGAAGTATTATTAGTTTCATTTTAAACTATTGATAGTCTTTAAAAACATCATTTTACTTGATTAATTGAACTTAAATACATTACAATTATGTAATATCAGTGCAATACACTCCTAAATTCTTATCAAATTTTGAGCTATTCTTAACGAAGTTTGAGAGCACTTGTTAACAATGTTAGCAATTTGGGAATAAAACAAATTATTTATGCTAAATTTATGAGTGATTTTAATATTTTTCACTTTTATAATAATATTGTGTACAAGTACTTATTTATGAGTTTTCAGTATATGTATATGTTTATTTAGTCCTACCCCTCTATTTAACAAAAAAAATAATATTTAAAAAATTATATAGCTAAAAAATATTTTTTATATAGATAATTTATATATATATATTTTAATTTATTTTTGCAAATGAGATTATTTTGACCAAGCAATCAAATACGTCAAAAATAAGACTGAGAGTGACTCCATTCGTTCTATTCAATGAGGCGTTATTTTCTCATTATCTATAAAGAATTATACAAGTATATTTTTATTTTTAGAATAAATTAGTTTAAAATTTCTTATCTTATTCTTAATGATATATTTTTATTTCATAAATTTCATCTAAGTTGAAGATCATAAATTAACATTGAATAAATTAGACCTGGAGGAAGGCTGCACCTACAAAACTAGGATGTATGGCAGCTGATTTTTGGGTCCAATAATATAATTCTTGCAGGTTGTTTTTTTTTGGATGTGACACTCAATATTAATTTTTGTCACAATTAATATATTTTTTCTGGTAGAGGGTTGTAATCAGTAATTGCCCATGCCTTTACTGCTATGCAAAAATTTCAACAAGAAAAAAAGATCAATTAAAATAATGTAGAATATAATTAAAATATAAATTTTATTTCGTATCAAAACTTTTGAAGATGGAGTTTGAAACGTAAAAAATGAAATATTTAAAATTATGTTTTGTCCAGGTAAAAGTCAAAACTAGTCTGACAAAATTTTGAGAACTCGAAAAATATTAGAATAATATTGTCAAAATCGAATAAAAAAGTTTGATGTTTAAAAATAAACTTTCAAAAATCATTTTTTTCTTTTGGTAACTGACATTTGCATGTTCGAGTTCTTAATTTGACATTCTAGTGTTCTTTAGTCGGTTTAATCATCTAATTAAAATTGTTAACCACGTAGAATTAATCTTTGTATGCCTCTTATATTATTATTTTTTAATTTTAACCAAATTAAATCATGCAATATTTTTTATTTAAACCTCATACCTTAGGTAGATGTACTCGTCTAGGTCAACCCTTAGGACAACTTATCGTTTTTGAAATTTAAGAATAATAAATTCGATCCTCTATTTTTCTCTACTTAAATATCAGATTAATTTACACGATGATTATTAAATTGAATTATTCTTCTAACATAACTTACAAACCATTCACCATTCGTTACTTGAACGATGCTCCATTAGTGAAAGTCTACAATATATAATTATATATCAAAAAAAAAAAAACAAATAAAC</genome_strand>
        <mrna_strand>AGTGATCAAGAAGGCTATGGTTGAGCTTGAAG...................................................................................................................GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG.............................................................................................................................................GTCCCATTCAATTTGTTGGTCCAGTGGCAAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCTTAGGA--GA--GGAGATATGAGTTGTTGTGAAATACATTTGTGGTACTATGAGTTTTTCGAGGGAGAACGTAAGCACTTAGCGCTTATGTTTAAGTTTTTTATCGGCTTATGATCTTTGTGAAACTTGAATCTTGCTTTTAACATATGCTTGATTACAAGA-TATTAGTGTGGCATTTGAATAATATAACCTCTTCTTTT-TAATTATGAAGAT-AAATGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACC-GAAGTGCCTTTGCATCTTAAAAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224397" ref_strand="+" ref_description="SGN-E224397 [cLEL-27-I3](-)">
      <seq>ggttgagcttgaaggtgctccattcaagaaatttgcttcaaagagggaagaatgggctcttaacaaccgatacattaacccaggtcccattcaatttgttggtccagtggcgaataaagtaaacccccctttacttctggagttgggagtagatgcataggagggaggggatatatgaattgttgtgaaatacccttgttgtactatgattttttcgagggagaacgtaagcccttatcgcttatgtttaagttgtttttcggctaatgatctatgtgaaactcgaatcttgcttttaacatatgcttgattacaagatttttaatgtggcatctgcctaatataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="68538" stop="69612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68711" g_stop="68724" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68840" g_stop="68908" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="83" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69050" g_stop="69303" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="337" r_length="254" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69304" i_stop="69592" i_length="289">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69593" g_stop="69612" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="357" r_length="20" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="383"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E224397" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68711" e_stop="68724"/>
          <exon e_start="68840" e_stop="68908"/>
          <exon e_start="69050" e_stop="69303"/>
          <exon e_start="69593" e_stop="69612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAGCTTGAAGGTTAGAACTCTCGGATATAATATAACTTCTATCAAAACTGTTTGTTCTTACAGAGCGCAACTACAACCCATTCATGTTCAACCAAGTAGAAAACTAACTTGGAATGTTTATTCAGGTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAGGTATGTTGAGTTTGACCTTGGTTTATGAAGCAGCATTAGTTATTAATTATTATCGATAATTCTGCTCACCTTATTATATGACATATTTGGGGGAAAATGGAGCATTCAATCTCACCATCTCTTGTGGTTTTGTGAATACAGGTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAATATTCTCTTCTTATGAAGGTAAATGAAAAAAAATACATAAGTAGAGCCTTTGCATATTATTACTGTGTTTATGTCGATTTGATGAATCTGGCACTCTTTTGTCAATTTGTTCTTGGACTACCGGTGCTTGGTGATAATAATCAGTATGAATACTTGTAATCTAACACTTTACATAAATGATATTAACTCAAATTGTCGATTTTGATGATATTCTTAAAAGAAAAACCTATACTATTACATGTTTAATTTGTTGTATTTACACAGCAAATTTGAAAAAAGGCAAA</genome_strand>
        <mrna_strand>GGTTGAGCTTGAAG...................................................................................................................GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG.............................................................................................................................................GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCCCCCTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACCCTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCCCTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATCTGC.................................................................................................................................................................................................................................................................................................CTAATATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E606206" ref_strand="+" ref_description="SGN-E606206 [22145]">
      <seq>cttaacaaccgatacattaacccaggtcccattcaatttgttggtccagtggcaaataaagtaaaccacactttacttctggagttgggagtagatgcttaggagaggagatatgagttgttgtgaaatacatttgttgtactatgagtttttcgagggagaacgtaagcacttagcgcttatgtttaagttttttatcggcttatgatctttgtgaaactcgaatcttgcttttaacatatgcttgattacaagatattagtgtggcatttgaataatataacctcttctttttaattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="68584" stop="69626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68884" g_stop="68908" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.796" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69050" g_stop="69327" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="298" r_length="273" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69328" i_stop="69592" i_length="265">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69593" g_stop="69605" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="311" r_length="13" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E606206" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68884" e_stop="68908"/>
          <exon e_start="69050" e_stop="69327"/>
          <exon e_start="69593" e_stop="69605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACAACCGATACATTAACCCAGGTATGTTGAGTTTGACCTTGGTTTATGAAGCAGCATTAGTTATTAATTATTATCGATAATTCTGCTCACCTTATTATATGACATATTTGGGGGAAAATGGAGCATTCAATCTCACCATCTCTTGTGGTTTTGTGAATACAGGTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAATATTCTCTTCTTATGAAGGTAAATGAAAAAAAATACATAAGTAGAGCCTTTGCATATTATTACTGTGTTTATGTCGATTTGATGAATCTGGCACTCTTTTGTCAATTTGTTCTTGGACTACCGGTGCTTGGTGATAATAATCAGTATGAATACTTGTAATCTAACACTTTACATAAATGATATTAACTCAAATTGTCGATTTTGATGATATTCTTAAAAGAAAAACCTATACTATTACATGTTTAATTTGTTGTATTTACACAGCAAATTTGAAAAA</genome_strand>
        <mrna_strand>CTTAACAACCGATACATTAACCCAG.............................................................................................................................................GTCCCATTCAATTTGTTGGTCCAGTGGCAAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCTTAGGA--GA--GGAGATATGAGTTGTTGTGAAATACATTTGTTGTACTATGAGTTTTTCGAGGGAGAACGTAAGCACTTAGCGCTTATGTTTAAGTTTTTTATCGGCTTATGATCTTTGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGA-TATTAGTGTGGCATTTGAATAATATAACCTCTTCTTTTTAAT.........................................................................................................................................................................................................................................................................TAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224897" ref_strand="+" ref_description="SGN-E224897 [cLEL-27-I3](-)">
      <seq>cccgggtcccattcaatttgttggtccagtggcgaataaagtaaacccccctttacttttggagttgggagtagatgcataggagggaggggatatatgaattgttgtgaaaaacacttgttggactatgattttttcgagggagaacgtaagcacttatcgcttatgtttaagttgtttttcggctaatgatctatgtgaaactcgaatcttgcttttaacatatgcttgattacaagatttttaatgtggcatttgaaccctataaaaaattaaaaaaacccaaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="68747" stop="69604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68904" g_stop="68908" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.796" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69050" g_stop="69311" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="267" r_length="262" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69312" i_stop="69592" i_length="281">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69593" g_stop="69604" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="279" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="285" polyA_stop="305"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E224897" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68904" e_stop="68908"/>
          <exon e_start="69050" e_stop="69311"/>
          <exon e_start="69593" e_stop="69604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGGTATGTTGAGTTTGACCTTGGTTTATGAAGCAGCATTAGTTATTAATTATTATCGATAATTCTGCTCACCTTATTATATGACATATTTGGGGGAAAATGGAGCATTCAATCTCACCATCTCTTGTGGTTTTGTGAATACAGGTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAATATTCTCTTCTTATGAAGGTAAATGAAAAAAAATACATAAGTAGAGCCTTTGCATATTATTACTGTGTTTATGTCGATTTGATGAATCTGGCACTCTTTTGTCAATTTGTTCTTGGACTACCGGTGCTTGGTGATAATAATCAGTATGAATACTTGTAATCTAACACTTTACATAAATGATATTAACTCAAATTGTCGATTTTGATGATATTCTTAAAAGAAAAACCTATACTATTACATGTTTAATTTGTTGTATTTACACAGCAAATTTGAAAA</genome_strand>
        <mrna_strand>CCCGG.............................................................................................................................................GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCCCCCTTTACTTTTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAAAACACTTGTTGGACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAACCCTATA.........................................................................................................................................................................................................................................................................................AAAAATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725896" ref_strand="+" ref_description="SGN-E725896 [LA08CF08]">
      <seq>gaaaaactcaaccaatcttattgacaaatttcatgtctccctctatttattattcgtagggactttctattccgttccttctttttctttcctcgtacgaacacataggagaaagaagaaaagagtttctttgttttcttctatctgcagaagcaaagaatggaagaccctgaaaggcttacatcatctaacagtcaaacaaccacgattagctccgactctatccattcacccgaattcgaattttgcatggtccgaaacccatcttttcctcaacccaatcagctctctgccgctaagctcttctcccatggcgccctactcccattagacctccttcagaatgaaacagatgttatttcgcctgaaccatccgggtcgagccgacccgaaactgaatctggagttgagccttctgctgcgatagtcagctcgtccggcggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="80693" stop="81738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80993" g_stop="81438" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E725896" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80993" e_stop="81438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACTCAACCAATCTTATTGACAAATTTCATGTCTCCCTCTATTTATTATTCGTAGGGTCTTTCTCTTCCGTTCCTTCTTTTTCTTTCCTCGTAAGAACACAAAGGAGAAAGAAGAAAAGAGTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGG</genome_strand>
        <mrna_strand>GAAAAACTCAACCAATCTTATTGACAAATTTCATGTCTCCCTCTATTTATTATTCGTAGGGACTTTCTATTCCGTTCCTTCTTTTTCTTTCCTCGTACGAACACATAGGAGAAAGAAGAAAAGAGTTTCTTTGTTTTCTTCTATCTGCAGAAGCAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGCATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGCTAAGCTCTTCTCCCATGGCGCCCTACTCCCATTAGACCTCCTTCAGAATGAAACAGATGTTATTTCGCCTGAACCATCCGGGTCGAGCCGACCCGAAACTGAATCTGGAGTTGAGCCTTCTGCTGCGATAGTCAGCTCGTCCGGCGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369821" ref_strand="+" ref_description="SGN-E369821 [TUS-25-K9]">
      <seq>tttctcttccgttccttctttttctttcctcgtaagaacacaaaggagaaagaagaaaagagtttcttttttttcttctctctgcagaaacaaagaatggaagaccctgaaaggcttacatcatctaacagtcaaacaaccacgattagctccgactctatccattcacccgaattcgaattttggatggtccgaaacccatcttttcctcaacccaatcagctctctgccgatgagctcttctcccatggcgtcctactcccattagacctccttcaaaatgaaacaaatgttatttcgcctgaaccatccgggtcgggccgacccgaaactgaatctggggttgagccttctgctgcgatagtcaactcgtccggcggaggagcttctttcacctcctcgaagcgatggaaggatatattcaagaaaactgagaagaaagatagtaatgaggagaattgtagagagaagaaaaaggagaagaagaaagagaaaaaactggttgggggaagcaatggcgtgactggggcggagttgaacattaacatttggcccttttcgaggagtagatccggcggaaacggaggaagtaggccttgggttacgggtggatccggattgccgacgcgaaaggtcagtagtgctccgtgttcccgaagcactccgccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="80756" stop="82026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81056" g_stop="81726" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E369821" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81056" e_stop="81726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTCCGTTCCTTCTTTTTCTTTCCTCGTAAGAACACAAAGGAGAAAGAAGAAAAGAGTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTTCGAGGAGTAGATCCGCCGGAAACGGAGGAAGTAGGCCTCGGGTTACGGGTGGATCCGGATTGGCGACGCGAAAGGTCAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGG</genome_strand>
        <mrna_strand>TTTCTCTTCCGTTCCTTCTTTTTCTTTCCTCGTAAGAACACAAAGGAGAAAGAAGAAAAGAGTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTTCGAGGAGTAGATCCGGCGGAAACGGAGGAAGTAGGCCTTGGGTTACGGGTGGATCCGGATTGCCGACGCGAAAGGTCAGTAGTGCTCCGTGTTCCCGAAGC-ACTCCGCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249011" ref_strand="+" ref_description="SGN-E249011 [cLEF-49-M17]">
      <seq>tttctcttccgttccttctttttctttcctcgtaagaacacaaaggagaaagaagaaaagagtttcttttttttcttctctctgcagaaacaaagaatggaagaccctgaaaggcttacatcatctaacagtcaaacaaccacgattagctccgactctatccattcacccgaattcgaattttggatggtccgaaacccatcttttcctcaacccaatcagctctctgccgatgagctcttctcccatggcgtcctactcccattagacctccttcaaaatgaaacaaatgttatttcgcctgaaccatccgggtcgggccgacccgaaactgaatctggggttgagccttctgctgcgatagtcaactcgtccggcggaggagcttctttcacctcctcgaagcgatggaaggatatattcaagaaaactgagaagaaagatagtaatgaggagaattgttgagagaagaaaaaggagaagaagaaagagaaaaaactggttgggggaagcaatggcgtgactggggcggagttgaacattaacatttggcccttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="80756" stop="81915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81056" g_stop="81615" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E249011" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81056" e_stop="81615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTCCGTTCCTTCTTTTTCTTTCCTCGTAAGAACACAAAGGAGAAAGAAGAAAAGAGTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTTC</genome_strand>
        <mrna_strand>TTTCTCTTCCGTTCCTTCTTTTTCTTTCCTCGTAAGAACACAAAGGAGAAAGAAGAAAAGAGTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTTGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325955" ref_strand="+" ref_description="SGN-E325955 [cTOC-12-F20]">
      <seq>cttccgttccttctttttctttcctcgtaagaacacaaaggagaaagaagaaaagagtttcttttttttcttctctctgcagaaacaaagaatggaagaccctgaaaggcttacatcatctaacagtcaaacaaccacgattagctccgactctatccattcacccgaattcgaattttggatggtccgaaacccatcttttcctcaacccaatcagctctctgccgatgagctcttctcccatggcgtcctactcccattagacctccttcaaaatgaaacaaatgttatttcgcctgaaccatccgggtcgggccgacccgaaactgaatctggggttgagccttctgctgcgatagtcaactcgtccggcggaggagcttctttcacctcctcgaagcgatggaaggatatattcaagaaaactgagaagaaagatagtaatgaggagaattgtagagagaagaaaaaggagaagaagaaagagaaaaaactggttgggggaagcaatggcgtgactggggcggagttgaacattaacatttggccctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="80761" stop="81914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81061" g_stop="81614" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E325955" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81061" e_stop="81614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCGTTCCTTCTTTTTCTTTCCTCGTAAGAACACAAAGGAGAAAGAAGAAAAGAGTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTT</genome_strand>
        <mrna_strand>CTTCCGTTCCTTCTTTTTCTTTCCTCGTAAGAACACAAAGGAGAAAGAAGAAAAGAGTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731991" ref_strand="+" ref_description="SGN-E731991 [LA28DH01]">
      <seq>gttccttctttttctttcctcgtaagaacaccaaggagaaagaagaaaagagtttcttttttttcttctctctgcagaaacaaagaatggaagaccctgaaaggcttacatcctctaacagtcaaacaaccacgattagctccgactctatcgattcgcccgaattcgaattttggatggtccgaaacccatcttttcctcaacccaatcagctctctgccgatgagctcttctcccatggngtcctactcccattagacctccttcaaaatgaaacaaatgttatttcgcctgaaccatcccgggtcgggccgacccgaaactgaatctggggttgagccttctgctgcgatagtccactcctccggcggaggagcttctttcacctcctcgaagcgatggaaggatatattccagaaaactgagaagaaagatagcaatgaggagaattgtagagagaagaaaaaggagaagaagaaagagaaaaaactggttgggggaagcaatggcgtgacctgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="80766" stop="81884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81066" g_stop="81584" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E731991" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81066" e_stop="81584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCTTTTTCTTTCCTCGTAAGAACACAAAGGAGAAAGAAGAAAAGAGTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCAT-CCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGA-CTGGGG</genome_strand>
        <mrna_strand>GTTCCTTCTTTTTCTTTCCTCGTAAGAACACCAAGGAGAAAGAAGAAAAGAGTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCCTCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCGATTCGCCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGNGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCCACTCCTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCCAGAAAACTGAGAAGAAAGATAGCAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACCTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730480" ref_strand="+" ref_description="SGN-E730480 [LA24BA10]">
      <seq>cactaaggagaaagaagaaaagagtttctttttttttcttctctctgcagaaacaaagaatggaagaccctgaaaggcttacatcatctaacagtcaaacaaccacgattagctccgactctatccattcacccgaattcgaattttggatggtccgaaacccatcttttcctcaacccaatcagctctctgccgatgagctcttctcccatggcgtcctactcccattagacctccttcaaaatgaaacaaatgttatttcgcctgaaccatccgggtcgggccgacccgaaactgaatctggggttgagccttctgctgcgatagtcaactcgtccggcggaggagcttctttcacctcctcgaagcgatggaaggatatattcaagaaaactgagaagaaagatagtaatgaggagaattgtagagagaagaaaaaggagaagaagaaagagaaaaaactggttgggggaagcaatggcgtgactggggcggagttgaacattaacatttggcccttttcgaggagtagatccgccggaaacggaggaagtaggcctcgggttacgggtggatccggattggcgacgcgaaaggtcagtagtgctccgtgttcccggagcaactccgccggtgaatccaagtcacggaaatggcccagtagtcccagtcgtggtggggttcatttgggccggagcagcccagtttggcaggtacgacggagctctatcaacccaggatccggtacccggagctccgacaacctcgtcaaaactactgaaaaagccatcagaaaagagcccccccagaagaaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="80794" stop="82212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81094" g_stop="81912" g_length="819"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="819" r_length="819" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E730480" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81094" e_stop="81912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGGAGAAAGAAGAAAAGAGTTTC-TTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTTCGAGGAGTAGATCCGCCGGAAACGGAGGAAGTAGGCCTCGGGTTACGGGTGGATCCGGATTGGCGACGCGAAAGGTCAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGGTGAATCCAAGTCACGGAAATGGCCCAGTAGTCCCAGTCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGGCAGGTACGACGGAGCTCTATCAACCCAGGATCCGGTACCCGGAGCTCCGACAACCTCGTCAAAACTACTGAAAAAGCCATCAGAAAAGAAGCCCCCCAGAAAGAAAGCAG</genome_strand>
        <mrna_strand>CACTAAGGAGAAAGAAGAAAAGAGTTTCTTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTTCGAGGAGTAGATCCGCCGGAAACGGAGGAAGTAGGCCTCGGGTTACGGGTGGATCCGGATTGGCGACGCGAAAGGTCAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGGTGAATCCAAGTCACGGAAATGGCCCAGTAGTCCCAGTCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGGCAGGTACGACGGAGCTCTATCAACCCAGGATCCGGTACCCGGAGCTCCGACAACCTCGTCAAAACTACTGAAAAAGCCATCAGAAAAGAGCCCCCCCAG-AAGAAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729741" ref_strand="+" ref_description="SGN-E729741 [LA21DH03]">
      <seq>gtttcttttttttcttctctctgcagaaacaaagaatggaagaccctgaaaggcttacatcatctaacagtcaaacaaccacgattagctccgactctatccattcacccgaattcgaattttggatggtccgaaacccatcttttcctcaacccaatcagctctctgccgatgagctcttctcccatggcgtcctactcccattagacctccttcaaaatgaaacaaatgttatttcgcctgaaccatccgggtcgggccgacccgaaactgaatctggggttgagccttctgctgcgatagtcaactcgtccggcggaggagcttctttcacctcctcgaagcgatggaaggatatattcaagaaaactgagaagaaagatagtaatgaggagaattgtagagagaagaaaaaggagaagaagaaagagaaaaaactggttgggggaagcaatggcgtgactggggcggagttgaacattaacatttggcccttttcgaggagtagatccgccggaaacggaggaagtaggcctcgggttacgggtggatccggattggcgacgcgaaaggtcagtagtgctccgtgttcccggagcaactccgccggtgaatccaagtcacggaaatggcccagtagtcccagtcgtggtggggttcatttgggccggagcagcccagtttggcaggtacgacggagctctatcaacccaggatccggtacccggagctccgacaacctcgtcaaaactactgaaaaagccatcagaaaagaagccccccagaaagaaagcagcaccagaaaggtagtaactaaaaaagaaggcgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="80817" stop="82248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81117" g_stop="81948" g_length="832"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="832" r_length="832" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E729741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81117" e_stop="81948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTTCGAGGAGTAGATCCGCCGGAAACGGAGGAAGTAGGCCTCGGGTTACGGGTGGATCCGGATTGGCGACGCGAAAGGTCAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGGTGAATCCAAGTCACGGAAATGGCCCAGTAGTCCCAGTCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGGCAGGTACGACGGAGCTCTATCAACCCAGGATCCGGTACCCGGAGCTCCGACAACCTCGTCAAAACTACTGAAAAAGCCATCAGAAAAGAAGCCCCCCAGAAAGAAAGCAGCACCAGAAAGGTAGTAACTAAAAAAGAAGGCGTTGA</genome_strand>
        <mrna_strand>GTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTTCGAGGAGTAGATCCGCCGGAAACGGAGGAAGTAGGCCTCGGGTTACGGGTGGATCCGGATTGGCGACGCGAAAGGTCAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGGTGAATCCAAGTCACGGAAATGGCCCAGTAGTCCCAGTCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGGCAGGTACGACGGAGCTCTATCAACCCAGGATCCGGTACCCGGAGCTCCGACAACCTCGTCAAAACTACTGAAAAAGCCATCAGAAAAGAAGCCCCCCAGAAAGAAAGCAGCACCAGAAAGGTAGTAACTAAAAAAGAAGGCGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579625" ref_strand="+" ref_description="SGN-E579625 [86756]">
      <seq>gaaaggctacatcatgcaacagtggaacaaggagaattagctccgactctatccattcacccgaattcgaattttggatggtccgaaacccatcattccctcagcctaatcagctctctgccgatgagctcttctccgatggcatccttctccctttagacctccttcaaaatgacccaaatgctatttcgcctgaaccgtccgggtccggccgatccgaaactgattctggaggggagccttctgctgcgatagtcaactcgtccgccggaggagcttctttcacctcctcgaagcgatggaaggatattttcaagaaaactgacaagaaagatagtaatgaggagagttgtagagagaagaaaaaggacaagaagaaagagaaaaaacttgttgggggaagcaatggggtgactggggctgagctcaatattaatatttggcccttttcgaggagtagatccgccggaaatggaggaagtaggcctcgggttacgggtggatccggattagcgacccgaaaggtaagtagtgctccgtgttcccggagcaactctgccggtgaatccaagtcacggaaatggcccagtagtcccagccgtggtggggttcatttgggccggagcagcccagtttggcaggtacgacggagctccgttaactcaggatccggtggccggagctccgataacctcgtgagaactaatgaaaaagcatcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="80864" stop="82186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81164" g_stop="81886" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E579625" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81164" e_stop="81886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTTCGAGGAGTAGATCCGCCGGAAACGGAGGAAGTAGGCCTCGGGTTACGGGTGGATCCGGATTGGCGACGCGAAAGGTCAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGGTGAATCCAAGTCACGGAAATGGCCCAGTAGTCCCAGTCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGGCAGGTACGACGGAGCTCTATCAACCCAGGATCCGGTACCCGGAGCTCCGACAACCTCGTCAAAACTACTGAAAAAGCCATCAGA</genome_strand>
        <mrna_strand>GAAAGGC-TACATCATGCAACAGTGGAACAAGGAGAATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCATTCCCTCAGCCTAATCAGCTCTCTGCCGATGAGCTCTTCTCCGATGGCATCCTTCTCCCTTTAGACCTCCTTCAAAATGACCCAAATGCTATTTCGCCTGAACCGTCCGGGTCCGGCCGATCCGAAACTGATTCTGGAGGGGAGCCTTCTGCTGCGATAGTCAACTCGTCCGCCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATTTTCAAGAAAACTGACAAGAAAGATAGTAATGAGGAGAGTTGTAGAGAGAAGAAAAAGGACAAGAAGAAAGAGAAAAAACTTGTTGGGGGAAGCAATGGGGTGACTGGGGCTGAGCTCAATATTAATATTTGGCCCTTTTCGAGGAGTAGATCCGCCGGAAATGGAGGAAGTAGGCCTCGGGTTACGGGTGGATCCGGATTAGCGACCCGAAAGGTAAGTAGTGCTCCGTGTTCCCGGAGCAACTCTGCCGGTGAATCCAAGTCACGGAAATGGCCCAGTAGTCCCAGCCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGGCAGGTACGACGGAGCTCCGTTAACTCAGGATCCGGTGGCCGGAGCTCCGATAACCTCGTGAGAACTAATGAAAAAG-CATCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345020" ref_strand="+" ref_description="SGN-E345020 [cTOF-22-N3]">
      <seq>aaggcttacatcatctaacagtcaaacaaccacgattagctccgactctatccattcacccgaattcgaattttggatggtccgaaacccatcttttcctcaacccaatcagctctctgccgatgagctcttctcccatggcgtcctactcccattagacctccttcaaaatgaaacaaatgttatttcgcctgaaccatccgggtcgggccgacccgaaactgaatctggggttgagccttctgctgcgatagtcaactcgtccggcggaggagcttctttcacctcctcgaagcgatggaaggatatattcaagaaaactgagaagaaagataggtatgaggagaattggagagagaagaaaaaggagaagaagaaagagaaaaaactggttggggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="80866" stop="81865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81166" g_stop="81565" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E345020" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81166" e_stop="81565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGA</genome_strand>
        <mrna_strand>AAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGGTATGAGGAGAATTGGAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613404" ref_strand="+" ref_description="SGN-E613404 [63178]">
      <seq>ctccgactctatccattcacccgaattcgaattttggatggtccgaaacccatcatttcctcagcctaatcagctctctgccgatgagctcttctccgatggcatccttctccctttagacctccttcaaaatgacccaaatgctatttcgcctgaaccgtccgggtccggccgatccgaaactgattctggaggggagccttctgctgcgatagtcaactcgtccgccggaggagcttctttcacctcctcgaagcgatggaaggatattttcaagaaaactgacaagaaagatagtaatgaggagagttgtagagagaagaaaaaggacaagaagaaagagaaaaaacttgttgggggaagcaatggggtgactggggctgagctcaatattaatatttggcccttttcgaggagtagatccgccggaaatggaggaagtagacctcgggttacgggtggatccggattagcgacccgaaaggtaagtagtgctccgtgttcccggagcaactccgccggtgaatccaagtcacggaaatggcccagtagtcccagccgtggtggggttcatttgggccggagcagcccagtttggcaggtacgacggagctccgttaaactcaggatccggtagccggagctccgataacctcgtgagaactaatgaaaaatcaattacaaaagaagcccgccaggaaagaaagcagcaccaaaaaaggtagttattaaacacagaaggcgttgaaggccgcggaaatggtcgtcagcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="80905" stop="82274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81205" g_stop="81974" g_length="770"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="773" r_length="773" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E613404" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81205" e_stop="81974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTTCGAGGAGTAGATCCGCCGGAAACGGAGGAAGTAGGCCTCGGGTTACGGGTGGATCCGGATTGGCGACGCGAAAGGTCAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGGTGAATCCAAGTCACGGAAATGGCCCAGTAGTCCCAGTCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGGCAGGTACGACGGAGCT-CTATCAACCCAGGATCCGGTACCCGGAGCTCCGACAACCTCGTCAAAACTACTGAAAAAGCCATCAGAAAAGAAGCCCCCCA-GAAAGAAAGCAGCACC-AGAAAGGTAGTAACTAAA-AAAGAAGGCGTTGAAGTCCGCCGGAAATGGTCGTCAGCGG</genome_strand>
        <mrna_strand>CTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCATTTCCTCAGCCTAATCAGCTCTCTGCCGATGAGCTCTTCTCCGATGGCATCCTTCTCCCTTTAGACCTCCTTCAAAATGACCCAAATGCTATTTCGCCTGAACCGTCCGGGTCCGGCCGATCCGAAACTGATTCTGGAGGGGAGCCTTCTGCTGCGATAGTCAACTCGTCCGCCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATTTTCAAGAAAACTGACAAGAAAGATAGTAATGAGGAGAGTTGTAGAGAGAAGAAAAAGGACAAGAAGAAAGAGAAAAAACTTGTTGGGGGAAGCAATGGGGTGACTGGGGCTGAGCTCAATATTAATATTTGGCCCTTTTCGAGGAGTAGATCCGCCGGAAATGGAGGAAGTAGACCTCGGGTTACGGGTGGATCCGGATTAGCGACCCGAAAGGTAAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGGTGAATCCAAGTCACGGAAATGGCCCAGTAGTCCCAGCCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGGCAGGTACGACGGAGCTCCGTTAAACTCAGGATCCGGTAGCCGGAGCTCCGATAACCTCGTGAGAACTAATGAAAAATCAATTACAAAAGAAGCCCGCCAGGAAAGAAAGCAGCACCAAAAAAGGTAGTTATTAAACACAGAAGGCGTTGAAGGCCG-CGGAAATGGTCGTCAGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727143" ref_strand="+" ref_description="SGN-E727143 [LA13DD11]">
      <seq>cgctacacttcaacttgaatagcaatagggcagtatgttgaccaaactgagggccaaatattacattgcaaacgtcaaaagttaggactttacattacgaaaaagttacataggagaatatagaaaaggataatgatagatacactaacatataactcaaaaagtgtgtaattactttggatttgccactatttaatttaatatacttttttagtaaataggcttttgagattaaataagttactgccacgtaccccttcaccggtgactgtgctgctaccattctgatcatcaccgactccggtggcggcggcgatatggatggcactattttgatcacttctgcaacctaactgattcctgtaaccaatgcacatagggacattcaagtttaagactctagttttaggcccacctccggccgccgctgacgaccatttccggcggacttcaacgccttcttttttagttactacctttctggtgctgctttctttctggggggcttcttttctgatggctttttcagtagttttgacgaggttgtcggagctccgggtaccggatcctgggttgatagagctccgtcgtacctgccaaactgggctgctccggcccaaatgaaccccaccacgactgggactactgggccatttccgtgacttggattcaccggcggagttgctccgggaacacggagcactactgacctttcgcgtcgccaatccggatccacccgtaacccgaggcctacttcctccgtttccggcggatctactcctcgagaagggccaaatgttaatgttcaactccngcccagtcacgccattgcttcccccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="82694" stop="81257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82398" g_stop="81557" g_length="842"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E727143" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82398" e_stop="81557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACTTCAACTTGAATAGCAATAGGGCAGTATGTTGACCAAACTGAGGGCCAAATATTACATTGCAAACGTCAAAAGTTAGGACTTTACATTACGAAAAAGTTACATAGGAGAATATAGAAAAGGATAATGATAGATACACTAACATATAACTCAAAAAGTGTGTAATTACTTTGGATTTGCCACTATTTAATTTAATATACTTTTTTAGTAAATAGGCTTTTGAGATTAAATAAGTTACTGCCACGTACCCCTTCACCGGTGACTGTGCTGCTACCATTCTGATCATCACCGACTCCGGTGGCGGCGGCGATATGGATGGCACTATTTTGATCACTTCTGCAACCTAACTGATTCCTGTAACCAATGCACATAGGGACATTCAAGTTTAAGACTCTAGTTTTAGGCCCACCTCCGGCCGCCGCTGACGACCATTTCCGGCGGACTTCAACGCCTTCTTTTTTAGTTACTACCTTTCTGGTGCTGCTTTCTTTCTGGGGGGCTTCTTTTCTGATGGCTTTTTCAGTAGTTTTGACGAGGTTGTCGGAGCTCCGGGTACCGGATCCTGGGTTGATAGAGCTCCGTCGTACCTGCCAAACTGGGCTGCTCCGGCCCAAATGAACCCCACCACGACTGGGACTACTGGGCCATTTCCGTGACTTGGATTCACCGGCGGAGTTGCTCCGGGAACACGGAGCACTACTGACCTTTCGCGTCGCCAATCCGGATCCACCCGTAACCCGAGGCCTACTTCCTCCGTTTCCGGCGGATCTACTCCTCGAAAAGGGCCAAATGTTAATGTTCAACTCCGCCCCAGTCACGCCATTGCTTCCCCCAAC</genome_strand>
        <mrna_strand>CGCTACACTTCAACTTGAATAGCAATAGGGCAGTATGTTGACCAAACTGAGGGCCAAATATTACATTGCAAACGTCAAAAGTTAGGACTTTACATTACGAAAAAGTTACATAGGAGAATATAGAAAAGGATAATGATAGATACACTAACATATAACTCAAAAAGTGTGTAATTACTTTGGATTTGCCACTATTTAATTTAATATACTTTTTTAGTAAATAGGCTTTTGAGATTAAATAAGTTACTGCCACGTACCCCTTCACCGGTGACTGTGCTGCTACCATTCTGATCATCACCGACTCCGGTGGCGGCGGCGATATGGATGGCACTATTTTGATCACTTCTGCAACCTAACTGATTCCTGTAACCAATGCACATAGGGACATTCAAGTTTAAGACTCTAGTTTTAGGCCCACCTCCGGCCGCCGCTGACGACCATTTCCGGCGGACTTCAACGCCTTCTTTTTTAGTTACTACCTTTCTGGTGCTGCTTTCTTTCTGGGGGGCTTCTTTTCTGATGGCTTTTTCAGTAGTTTTGACGAGGTTGTCGGAGCTCCGGGTACCGGATCCTGGGTTGATAGAGCTCCGTCGTACCTGCCAAACTGGGCTGCTCCGGCCCAAATGAACCCCACCACGACTGGGACTACTGGGCCATTTCCGTGACTTGGATTCACCGGCGGAGTTGCTCCGGGAACACGGAGCACTACTGACCTTTCGCGTCGCCAATCCGGATCCACCCGTAACCCGAGGCCTACTTCCTCCGTTTCCGGCGGATCTACTCCTCGAGAAGGGCCAAATGTTAATGTTCAACTCCNGCCCAGTCACGCCATTGCTTCCCCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345862" ref_strand="+" ref_description="SGN-E345862 [cTOF-24-M11]">
      <seq>gtcagtagtgctccgtgttcccggagcaactccgccggtgaatccaagtcacggaaatggcccagtagtcccagtcgtggtggggttcatttgggccggagcagcccagtttggcaggtacgacggagctctatcaacccaggatccggtacccggagctccgacaacctcgtcaaaactactgaaaaagccatcagaaaagaagccccccagaaagaaagcagcaccagaaaggtagtaactaaaaaagaaggcgttgaagtccgccggaaatggtcgtcagcggcggccggaggtgggcctaaaactagagtcttaaacttgaatgtccctatgtgcattggttacaggaatcagttaggttgcagaagtgatcaaaatagtgccatccatatcgccgccgccaccggagtcggtgatgatcagaatggtagcagcacagtcaccggtgaaagggtacgtggcagtaacttatttaaatctcaaaagcctatttactaaaaaagtatattaaattaaatagtggcaaatccaaagtaattacacacttttttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="81389" stop="82544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81689" g_stop="82244" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E345862" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81689" e_stop="82244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGGTGAATCCAAGTCACGGAAATGGCCCAGTAGTCCCAGTCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGGCAGGTACGACGGAGCTCTATCAACCCAGGATCCGGTACCCGGAGCTCCGACAACCTCGTCAAAACTACTGAAAAAGCCATCAGAAAAGAAGCCCCCCAGAAAGAAAGCAGCACCAGAAAGGTAGTAACTAAAAAAGAAGGCGTTGAAGTCCGCCGGAAATGGTCGTCAGCGGCGGCCGGAGGTGGGCCTAAAACTAGAGTCTTAAACTTGAATGTCCCTATGTGCATTGGTTACAGGAATCAGTTAGGTTGCAGAAGTGATCAAAATAGTGCCATCCATATCGCCGCCGCCACCGGAGTCGGTGATGATCAGAATGGTAGCAGCACAGTCACCGGTGAAGGGGTACGTGGCAGTAACTTATTTA-ATCTCAAAAGCCTATTTACTAAAAAAGTATATTAAATTAAATAGTGGCAAATCCAAAGTAATTACACAC-TTTTTGAGT</genome_strand>
        <mrna_strand>GTCAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGGTGAATCCAAGTCACGGAAATGGCCCAGTAGTCCCAGTCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGGCAGGTACGACGGAGCTCTATCAACCCAGGATCCGGTACCCGGAGCTCCGACAACCTCGTCAAAACTACTGAAAAAGCCATCAGAAAAGAAGCCCCCCAGAAAGAAAGCAGCACCAGAAAGGTAGTAACTAAAAAAGAAGGCGTTGAAGTCCGCCGGAAATGGTCGTCAGCGGCGGCCGGAGGTGGGCCTAAAACTAGAGTCTTAAACTTGAATGTCCCTATGTGCATTGGTTACAGGAATCAGTTAGGTTGCAGAAGTGATCAAAATAGTGCCATCCATATCGCCGCCGCCACCGGAGTCGGTGATGATCAGAATGGTAGCAGCACAGTCACCGGTGAAAGGGTACGTGGCAGTAACTTATTTAAATCTCAAAAGCCTATTTACTAAAAAAGTATATTAAATTAAATAGTGGCAAATCCAAAGTAATTACACACTTTTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369820" ref_strand="+" ref_description="SGN-E369820 [TUS-25-K9](-)">
      <seq>atcaacccaggatccggtacccggagctccgacaacctcgtcaaaactactaaaaaagccatcagaaaagaagccccccagaaagaaagcagcaccaaaaaggtagtaactaaaaaagaaggcgttgaagtccgccggaaatggtcgtcagcggcggccggaggtgggcctaaaactagagtcttaaacttgaatgtccctatgtgcattggttacaggaatcagttaggttgcagaagtgatcaaaatagtgccatccatatcgccgccgccaccggagtcggtgatgatcagaatggtagcagcacagtcaccggtgaaggggtacgtggcagtaacttatttaatctcaaaagcctatttactaaaaaagtatattaaattaaatagtggcaaatccaaagtaattacacactttttgagttatatgttagtgtatctatcattatccttttctatattctcctatgtaactttttcgtaatgtaaagtcctaacttttgacgtttgcaatgtaatatttggccctcagtttggtcaacatactgccctattgctattcaagttgaagtgtttgtataattttgcctactttagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="81521" stop="82719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81821" g_stop="82418" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="608"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E369820" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81821" e_stop="82418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACCCAGGATCCGGTACCCGGAGCTCCGACAACCTCGTCAAAACTACTGAAAAAGCCATCAGAAAAGAAGCCCCCCAGAAAGAAAGCAGCACCAGAAAGGTAGTAACTAAAAAAGAAGGCGTTGAAGTCCGCCGGAAATGGTCGTCAGCGGCGGCCGGAGGTGGGCCTAAAACTAGAGTCTTAAACTTGAATGTCCCTATGTGCATTGGTTACAGGAATCAGTTAGGTTGCAGAAGTGATCAAAATAGTGCCATCCATATCGCCGCCGCCACCGGAGTCGGTGATGATCAGAATGGTAGCAGCACAGTCACCGGTGAAGGGGTACGTGGCAGTAACTTATTTAATCTCAAAAGCCTATTTACTAAAAAAGTATATTAAATTAAATAGTGGCAAATCCAAAGTAATTACACACTTTTTGAGTTATATGTTAGTGTATCTATCATTATCCTTTTCTATATTCTCCTATGTAACTTTTTCGTAATGTAAAGTCCTAACTTTTGACGTTTGCAATGTAATATTTGGCCCTCAGTTTGGTCAACATACTGCCCTATTGCTATTCAAGTTGAAGTGTTTGTATAATTTTGCCTACTTTAGT</genome_strand>
        <mrna_strand>ATCAACCCAGGATCCGGTACCCGGAGCTCCGACAACCTCGTCAAAACTACTAAAAAAGCCATCAGAAAAGAAGCCCCCCAGAAAGAAAGCAGCACCAAAAAGGTAGTAACTAAAAAAGAAGGCGTTGAAGTCCGCCGGAAATGGTCGTCAGCGGCGGCCGGAGGTGGGCCTAAAACTAGAGTCTTAAACTTGAATGTCCCTATGTGCATTGGTTACAGGAATCAGTTAGGTTGCAGAAGTGATCAAAATAGTGCCATCCATATCGCCGCCGCCACCGGAGTCGGTGATGATCAGAATGGTAGCAGCACAGTCACCGGTGAAGGGGTACGTGGCAGTAACTTATTTAATCTCAAAAGCCTATTTACTAAAAAAGTATATTAAATTAAATAGTGGCAAATCCAAAGTAATTACACACTTTTTGAGTTATATGTTAGTGTATCTATCATTATCCTTTTCTATATTCTCCTATGTAACTTTTTCGTAATGTAAAGTCCTAACTTTTGACGTTTGCAATGTAATATTTGGCCCTCAGTTTGGTCAACATACTGCCCTATTGCTATTCAAGTTGAAGTGTTTGTATAATTTTGCCTACTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718185" ref_strand="+" ref_description="SGN-E718185 [FC03DG11]">
      <seq>atgttgcaatattgaaattggcacccccaaacaagacaaaataaataaaagccctagaattaggtgattagtataatcattgaatcgaatcgtattcccctccttctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaactcaagcaacttctgagccatctgcttctgctcccacaagcagagtcccagcagcttccacaagtgttctggatgaatcattgccttcgacctcgcttcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85704" stop="89218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86004" g_stop="86292" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="577" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="673" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88754" g_stop="88918" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="838" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E718185" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86004" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="88918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGCAATATTGAAATTGGCACCCCCAAACAAGACAAAATAAATAAAAGCCCTAGAATTAGGTGATTAGTATAATCATTGAATCGAATCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATT</genome_strand>
        <mrna_strand>ATGTTGCAATATTGAAATTGGCACCCCCAAACAAGACAAAATAAATAAAAGCCCTAGAATTAGGTGATTAGTATAATCATTGAATCGAATCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTT-CAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394924" ref_strand="+" ref_description="SGN-E394924 [TUS-43-I9]">
      <seq>cccaaacaagacaaaataaataaaagccctagaattaggtgattagtataatcattgaatcgaatcgtattcccctccttctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85729" stop="88701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86029" g_stop="86292" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="553" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88401" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="647" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E394924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86029" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAACAAGACAAAATAAATAAAAGCCCTAGAATTAGGTGATTAGTATAATCATTGAATCGAATCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTC</genome_strand>
        <mrna_strand>CCCAAACAAGACAAAATAAATAAAAGCCCTAGAATTAGGTGATTAGTATAATCATTGAATCGAATCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202021" ref_strand="+" ref_description="SGN-E202021 [cLEC-7-H1]">
      <seq>ccaaacaagacaaaataaattttagccctagaattaggtgattagcgtggatcattgaatcgaatcgaattcccctccttctcgaagttgcagcaacagagtataatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85730" stop="88004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86030" g_stop="86292" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87704" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="374" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E202021" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86030" e_stop="86292"/>
          <exon e_start="87595" e_stop="87704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACAAGACAAAATAAATAAAAGCCCTAGAATTAGGTGATTAGTAT-AATCATTGAATCGAATCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTT</genome_strand>
        <mrna_strand>CCAAACAAGACAAAATAAATTTTAGCCCTAGAATTAGGTGATTAGCGTGGATCATTGAATCGAATCGAATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTATAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206744" ref_strand="+" ref_description="SGN-E206744 [cLEC-31-F15]">
      <seq>ttagtataatcattgaatcgaatcgtattcccctccttctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85771" stop="87955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86071" g_stop="86292" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87655" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="283" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E206744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86071" e_stop="86292"/>
          <exon e_start="87595" e_stop="87655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTATAATCATTGAATCGAATCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCT</genome_strand>
        <mrna_strand>TTAGTATAATCATTGAATCGAATCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620864" ref_strand="+" ref_description="SGN-E620864 [71570]">
      <seq>atcgtattcccctcattctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgatagcaagaaaccctctaggcaaacctccggtagccgtgccggtggaattcgtacactttccgatctcaatcgtccatccggtcacgattccgacagcgattccgatggtccccaagaatactacaccggtggtgaaaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacgcaaggtcctttggaaaatgtcgtccctagttcaagctcaacaagctttactggatctgcgagaacacttgcaggggagacagtgccaacatcagctcctcaaccacccgagtccatcgtgcacaatattgtcttctggagaaacggtttcactgtaaatgatggttctttgagaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccagatcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagccagcgcaactccgagcaacttctgagccatctgcttctggtcccacaaggcacagtcccagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85792" stop="89168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86092" g_stop="86292" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="490" r_length="289" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="586" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88754" g_stop="88868" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="704" r_length="118" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E620864" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86092" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="88868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAG-CAGCGCAACT-CAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAA-GCAGAGTCCCAGCAG</genome_strand>
        <mrna_strand>ATCGTATTCCCCTCATTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATAGCAAGAAACCCTCTAGGCAAACCTCCGGTAGCCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAATCGTCCATCCGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGTGGTGAAAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACGCAAGGTCCTTTGGAAAATGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCGAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCACCCGAGTCCATCGTGCACAATATTGTCTTCTGGAGAAACGGTTTCACTGTAAATGATGGTTCTTTGAGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGATCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCCAGCGCAACTCCGAGCAACTTCTGAGCCATCTGCTTCTGGTCCCACAAGGCACAGTCCCAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374890" ref_strand="+" ref_description="SGN-E374890 [TUS-15-O13]">
      <seq>tcgtattcccctccttctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagttttgtttcagggagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85793" stop="89090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86093" g_stop="86292" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="489" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="585" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88754" g_stop="88790" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="622" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E374890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86093" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="88790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGG</genome_strand>
        <mrna_strand>TCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTTGTTTCAGGGAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374607" ref_strand="+" ref_description="SGN-E374607 [TUS-15-P13]">
      <seq>tcgtattcccctccttctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggcttctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85793" stop="88715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86093" g_stop="86292" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="489" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="585" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E374607" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86093" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT</genome_strand>
        <mrna_strand>TCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTTCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204865" ref_strand="+" ref_description="SGN-E204865 [cLEC-14-N17]">
      <seq>tcgtattcccctccttctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaagctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85793" stop="88188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86093" g_stop="86292" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="489" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E204865" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86093" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG</genome_strand>
        <mrna_strand>TCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAAGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237661" ref_strand="+" ref_description="SGN-E237661 [cLED-19-G10]">
      <seq>tcgtattcccctccttctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaggctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85793" stop="88188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86093" g_stop="86292" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="489" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E237661" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86093" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG</genome_strand>
        <mrna_strand>TCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAGGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240779" ref_strand="+" ref_description="SGN-E240779 [cLED-24-K4]">
      <seq>tcgtattcccctccttctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85793" stop="88068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86093" g_stop="86292" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87768" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="374" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E240779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86093" e_stop="86292"/>
          <exon e_start="87595" e_stop="87768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGC</genome_strand>
        <mrna_strand>TCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469223" ref_strand="+" ref_description="SGN-E469223 [cSTB-10-L4]">
      <seq>cgtattcccctcattctcgaagttgcagcaaccagagtagaatcaatgtcctcacgcgatagcaagaaaccctctaggcaaacctccggtagccgtgccggtggaattcgtaccactttccgatctcaatcgtccatccggtcacgattccgacagcgattccgatggtccccaagaatactacaccggtggtgaaaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacgcaaggtcctttggaaaatgtcgtccctagttcaagctcaacaagctttactggatctgcgagaacacttgcaggggagacagtgccaacatcagctcctcaaccacccgagtccatcgtgcacaatattgtcttctggagaaacggtttcactgtaaatgatggttctttgagaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccagatcccaggtgcattgcaacctcataagaagggatgagaactgtcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85794" stop="88704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86094" g_stop="86292" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="490" r_length="289" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="586" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E469223" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86094" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTATTCCCCTCCTTCTCGAAGTTGCAGCAA-CAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTA-CACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT</genome_strand>
        <mrna_strand>CGTATTCCCCTCATTCTCGAAGTTGCAGCAACCAGAGTAGAATCAATGTCCTCACGCGATAGCAAGAAACCCTCTAGGCAAACCTCCGGTAGCCGTGCCGGTGGAATTCGTACCACTTTCCGATCTCAATCGTCCATCCGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGTGGTGAAAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACGCAAGGTCCTTTGGAAAATGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCGAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCACCCGAGTCCATCGTGCACAATATTGTCTTCTGGAGAAACGGTTTCACTGTAAATGATGGTTCTTTGAGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGATCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731343" ref_strand="+" ref_description="SGN-E731343 [LA26DD06]">
      <seq>gtattcccctccttctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaactcaagcaacttctgagccatctgcttctgctcccacaagcagagtcccagcagcttccacaagtgttctggatgaatcattgccttcgaccctcgcttcaaattagattggcagatggaagtcgcatggttgcacacttcaacttccaccaaactgttggcgacatccgtggcttcattgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85795" stop="89299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86095" g_stop="86292" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="487" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="583" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88754" g_stop="88999" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="830" r_length="247" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E731343" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86095" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="88999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGA-CCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCT</genome_strand>
        <mrna_strand>GTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGGCTTCATTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341136" ref_strand="+" ref_description="SGN-E341136 [cTOE-22-L15]">
      <seq>tcccctccttctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85799" stop="88696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86099" g_stop="86292" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="483" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88396" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="572" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E341136" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86099" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAA</genome_strand>
        <mrna_strand>TCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335501" ref_strand="+" ref_description="SGN-E335501 [cTOE-2-E8]">
      <seq>tcccctccttctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85799" stop="88188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86099" g_stop="86292" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="483" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E335501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86099" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG</genome_strand>
        <mrna_strand>TCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346275" ref_strand="+" ref_description="SGN-E346275 [cTOF-23-F19]">
      <seq>cctccttctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaactcaagcaacttctgagccatctgcttctgctcccacaagcagagtcccagcagcttccacaagtgttctggatgaatcattgccttcgacctcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85802" stop="89211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86102" g_stop="86292" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="480" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="576" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88754" g_stop="88911" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="734" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E346275" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86102" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="88911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCT</genome_strand>
        <mrna_strand>CCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440608" ref_strand="+" ref_description="SGN-E440608 [cSTA-17-D22]">
      <seq>cctcattctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgatagcaagaaaccctctaggcaaacctccggtagccgtgccggtggaattcgtacactttccgatctcaatcgtccatccggtcacgattccgacagcgattccgatggtccccaagaatactacaccggtggtgaaaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacgcaaggtcctttggaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85802" stop="87993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86102" g_stop="86292" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87693" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="290" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E440608" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86102" e_stop="86292"/>
          <exon e_start="87595" e_stop="87693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGT</genome_strand>
        <mrna_strand>CCTCATTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATAGCAAGAAACCCTCTAGGCAAACCTCCGGTAGCCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAATCGTCCATCCGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGTGGTGAAAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACGCAAGGTCCTTTGGAAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305700" ref_strand="+" ref_description="SGN-E305700 [cLEX-14-A17]">
      <seq>cttctcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85806" stop="88188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86106" g_stop="86292" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="476" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E305700" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86106" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG</genome_strand>
        <mrna_strand>CTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320373" ref_strand="+" ref_description="SGN-E320373 [cTOB-22-C22]">
      <seq>tcgaagttgcagcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaactcaagcaacttctgangcatctgcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85810" stop="89144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86110" g_stop="86292" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="472" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="568" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88754" g_stop="88844" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="659" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E320373" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86110" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="88844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTG</genome_strand>
        <mrna_strand>TCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGANGCATCTGCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709251" ref_strand="+" ref_description="SGN-E709251 [FA51AF04]">
      <seq>cgcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaactcaagcaacttctgagccatctgcttctgctcccacaagcagagtcccagcagcttccacaagtgttctggatgaatcattgccttcgacctcgcttcaaattagattggcagatggaagtcgcatggttgcacacttcaacttccaccaaactgttggcgacatccgtgcctttcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85821" stop="89296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86120" g_stop="86292" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="462" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="558" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88754" g_stop="88996" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="801" r_length="243" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E709251" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86120" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="88996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGAT</genome_strand>
        <mrna_strand>CGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302412" ref_strand="+" ref_description="SGN-E302412 [cLEW-27-N12]">
      <seq>agcaacagagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgctcgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85820" stop="88188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86120" g_stop="86292" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="462" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E302412" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86120" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG</genome_strand>
        <mrna_strand>AGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTCGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706970" ref_strand="+" ref_description="SGN-E706970 [FA31CG08]">
      <seq>gagtagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaactcaagcaacttctgagccatctgcttctgctcccacaagcagagtcccagcagcttccacaagtgttctggatgaatcattgccttcgacctcgcttcaaattagattggcagatggaagtcgcatggttgcacacttcaacttccaccaaactgttggcgacatccgtgccttcattgatgcttcaaggccaagtgacaccagggcatatcaactacaaactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85827" stop="89340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86127" g_stop="86292" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="455" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="551" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88754" g_stop="89040" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="838" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E706970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86127" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="89040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGT</genome_strand>
        <mrna_strand>GAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307436" ref_strand="+" ref_description="SGN-E307436 [cLEY-12-F15]">
      <seq>tagaatcaatgtcctcacgcgataccaagaaaccctctaggcaaacctccggtaaccgtgccggtggaattcgtacactttccgatctcaaccgtccatcaggtcacgattccgacagcgattccgatggtccccaagaatactacaccggcggtgagaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85830" stop="88699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86130" g_stop="86292" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="452" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88399" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="544" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E307436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86130" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTG</genome_strand>
        <mrna_strand>TAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437525" ref_strand="+" ref_description="SGN-E437525 [cSTA-4-E19]">
      <seq>gaatcaatgtcctcacgcgatagcaagaaaccctctaggcaaacctccggtagccgtgccggtggaattcgtacactttccgatctcaatcgtccatccggtcacgattccgacagcgattccgatggtccccaagaatactacaccggtggtgaaaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacgcaaggtcctttggaaaatgtcgtccctagttcaagctcaacaagctttactggatctgcgagaacacttgcaggggagacagtgccaacatcagctcctcaaccacccgagtccatcgtgcacaatattgtcttctggagaaacggtttcactgtaaatgatggttctttgagaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccagatcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaacttcagcaacttctgagccatctgcttctgctcccacagcacagtcccagcagcttncacaagtgttctggatgaatcattgccttcgacctcgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85832" stop="89212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86132" g_stop="86292" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="450" r_length="289" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="546" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88754" g_stop="88912" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="704" r_length="158" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E437525" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86132" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="88912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTT</genome_strand>
        <mrna_strand>GAATCAATGTCCTCACGCGATAGCAAGAAACCCTCTAGGCAAACCTCCGGTAGCCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAATCGTCCATCCGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGTGGTGAAAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACGCAAGGTCCTTTGGAAAATGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCGAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCACCCGAGTCCATCGTGCACAATATTGTCTTCTGGAGAAACGGTTTCACTGTAAATGATGGTTCTTTGAGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGATCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTTCAGCAACTTCTGAGCCATCTGCTTCTGCTCCCAC-AGCACAGTCCCAGCAGCTTNCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445562" ref_strand="+" ref_description="SGN-E445562 [cSTA-1-E19]">
      <seq>gaatcaatgtcctcacgcgatagcaagaaaccctctaggcaaacctccggtagccgtgccggtggaattcgtacactttccgatctcaatcgtccatccggtcacgattccgacagcgattccgatggtccccaagaatactacaccggtggtgaaaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacgcaaggtcctttggaaaatgtcgtccctagttcaagctcaacaagctttactggatctgcgagaacacttgcaggggagacagtgccaacatcagctcctcaaccacccgagtccatcgtgcacaatattgtcttctggagaaacggtttcactgtaaatgatggttctttgagaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccagatcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaacttcagcaacttctgagccatctgcttctgctcccacagcacagtcccagcagcttncacaagtgttctggatgaatcattgccttcgacctcgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85832" stop="89212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86132" g_stop="86292" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="450" r_length="289" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="546" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88754" g_stop="88912" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="704" r_length="158" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E445562" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86132" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="88912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTT</genome_strand>
        <mrna_strand>GAATCAATGTCCTCACGCGATAGCAAGAAACCCTCTAGGCAAACCTCCGGTAGCCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAATCGTCCATCCGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGTGGTGAAAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACGCAAGGTCCTTTGGAAAATGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCGAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCACCCGAGTCCATCGTGCACAATATTGTCTTCTGGAGAAACGGTTTCACTGTAAATGATGGTTCTTTGAGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGATCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTTCAGCAACTTCTGAGCCATCTGCTTCTGCTCCCAC-AGCACAGTCCCAGCAGCTTNCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437514" ref_strand="+" ref_description="SGN-E437514 [cSTA-4-C17]">
      <seq>gaatcaatgtcctcacgcgatagcaagaaaccctctaggcaaacctccggtagccgtgccggtggaattcgtacactttccgatctcaatcgtccatccggtcacgattccgacagcgattccgatggtccccaagaatactacaccggtggtgaaaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacgcaaggtcctttggaaaatgtcgtccctagttcaagctcaacaagctttactggatctgcgagaacacttgcaggggagacagtgccaacatcagctcctcaaccacccgagtccatcgtgcacaatattgtcttctggagaaacggtttcactgtaaatgatggttctttgagaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccagatcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaacttcagcaacttctgagccatctgcttctgctcccacaagcacagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85832" stop="89161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86132" g_stop="86292" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="450" r_length="289" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="546" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88754" g_stop="88861" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="654" r_length="108" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E437514" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86132" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="88861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTC</genome_strand>
        <mrna_strand>GAATCAATGTCCTCACGCGATAGCAAGAAACCCTCTAGGCAAACCTCCGGTAGCCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAATCGTCCATCCGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGTGGTGAAAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACGCAAGGTCCTTTGGAAAATGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCGAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCACCCGAGTCCATCGTGCACAATATTGTCTTCTGGAGAAACGGTTTCACTGTAAATGATGGTTCTTTGAGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGATCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTTCAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCACAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437534" ref_strand="+" ref_description="SGN-E437534 [cSTA-4-G19]">
      <seq>gaatcaatgtcctcacgcgatagcaagcaaaccctctcagcaaacctccggtagccgtgccggtggaaattcgtacactttccgatctcaatcgaccatccggtcacgataccaacagcgattccgatggtccccaaaaatactacaccggtggtgaaaaaagaggaatgctggttcaagatccttaaaagcataatgatgtggactccatctttgaccgagctaggcaagagggtgccacgcaaggtcctttggaaaatgtcgaccctagttcaagctcaacaagctttactggatctgcgagaacacttgcaggggagacagtgccaacatcagctcctcaaccacccgagtccatcgtgcacaatattgactcctggagaaacggattcactgtaaaagatggatcttagagaaggctggatgatcctgaaaatgcatcttatctggagagcatcacaaagactgaatgtcctagagagttggctcctgcagataccagatcccaggtgcattgccacctcataagaaaggatgagaactgtcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85832" stop="88704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86132" g_stop="86292" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.878" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="452" r_length="289" r_score="0.927"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="548" r_length="96" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E437534" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86132" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAATGTCCTCACGCGATACCAAG-AAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGG-AATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT</genome_strand>
        <mrna_strand>GAATCAATGTCCTCACGCGATAGCAAGCAAACCCTCTCAGCAAACCTCCGGTAGCCGTGCCGGTGGAAATTCGTACACTTTCCGATCTCAATCGACCATCCGGTCACGATACCAACAGCGATTCCGATGGTCCCCAAAAATACTACACCGGTGGTGAAAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGCTGGTTCAAGATCCTTAAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGAGGGTGCCACGCAAGGTCCTTTGGAAAATGTCGACCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCGAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCACCCGAGTCCATCGTGCACAATATTGACTCCTGGAGAAACGGATTCACTGTAAAAGATGGATCTTAGAGAAGGCTGGATGATCCTGAAAATGCATCTTATCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCACAAAGACTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGATCCCAGGTGCATTGCCACCTCATAAGAAAGGATGAGAACTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445564" ref_strand="+" ref_description="SGN-E445564 [cSTA-1-G19]">
      <seq>gaatcaatgtcctcacgcgatagcaagcaaaccctctcagcaaacctccggtagccgtgccggtggaaattcgtacactttccgatctcaatcgaccatccggtcacgataccaacagcgattccgatggtccccaaaaatactacaccggtggtgaaaaaagaggaatgctggttcaagatccttaaaagcataatgatgtggactccatctttgaccgagctaggcaagagggtgccacgcaaggtcctttggaaaatgtcgaccctagttcaagctcaacaagctttactggatctgcgagaacacttgcaggggagacagtgccaacatcagctcctcaaccacccgagtccatcgtgcacaatattgactcctggagaaacggattcactgtaaaagatggatcttagagaaggctggatgatcctgaaaatgcatcttatctggagagcatcacaaagactgaatgtcctagagagttggctcctgcagataccagatcccaggtgcattgccacctcataagaaaggatgagaactgtcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85832" stop="88704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86132" g_stop="86292" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.878" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="452" r_length="289" r_score="0.927"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="548" r_length="96" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E445564" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86132" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAATGTCCTCACGCGATACCAAG-AAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGG-AATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT</genome_strand>
        <mrna_strand>GAATCAATGTCCTCACGCGATAGCAAGCAAACCCTCTCAGCAAACCTCCGGTAGCCGTGCCGGTGGAAATTCGTACACTTTCCGATCTCAATCGACCATCCGGTCACGATACCAACAGCGATTCCGATGGTCCCCAAAAATACTACACCGGTGGTGAAAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGCTGGTTCAAGATCCTTAAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGAGGGTGCCACGCAAGGTCCTTTGGAAAATGTCGACCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCGAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCACCCGAGTCCATCGTGCACAATATTGACTCCTGGAGAAACGGATTCACTGTAAAAGATGGATCTTAGAGAAGGCTGGATGATCCTGAAAATGCATCTTATCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCACAAAGACTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGATCCCAGGTGCATTGCCACCTCATAAGAAAGGATGAGAACTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456236" ref_strand="+" ref_description="SGN-E456236 [cSTS-28-N18]">
      <seq>tgtcctcacgcgatagcaagataccctctaggcaaacctccggtagcccgtgccggtggaattcgtaccacctttccgatctcaatcgtccattccggtcacgattccgacagcgattccgatggtccccaagaaatactacaccggtggtgaaaaaagtggaatgcttgttcaagatcctttaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacgcaaggtcctttggaaaatgtcgtccctagttcaagctcaacaagctttactggatctgcgagaacacttgcaggggagacagtgccaacatcagctcctcaaccacccgagtccatcgtgcacaatattgtcttctggagaaacggtttcactgtaaatgatggttctttgagaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccagatcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacaccaagtttcgtttcaaggagtgggaagaacacttggaagcagcgcaactccagcaacttctgagccatctgcttctgctcccacaagcacagtcccagcagcttccacttagtgttctgggatgaatcattgccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85839" stop="89202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86139" g_stop="86292" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="448" r_length="289" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="544" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88754" g_stop="88902" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="695" r_length="151" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E456236" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86139" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="88902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTA-ACCGTGCCGGTGGAATTCGTA-CA-CTTTCCGATCTCAACCGTCCAT-CAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAA-TACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCAC-AAGTGTTCT-GGATGAATCATTGCCTTC</genome_strand>
        <mrna_strand>TGTCCTCACGCGATAGCAAGATACCCTCTAGGCAAACCTCCGGTAGCCCGTGCCGGTGGAATTCGTACCACCTTTCCGATCTCAATCGTCCATTCCGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAAATACTACACCGGTGGTGAAAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTTAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACGCAAGGTCCTTTGGAAAATGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCGAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCACCCGAGTCCATCGTGCACAATATTGTCTTCTGGAGAAACGGTTTCACTGTAAATGATGGTTCTTTGAGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGATCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACACCAAGTTTCGTTTCAAGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCCAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCACAGTCCCAGCAGCTTCCACTTAGTGTTCTGGGATGAATCATTGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437383" ref_strand="+" ref_description="SGN-E437383 [cSTA-3-H23]">
      <seq>cgaggcaagaaaccctctaggcaaacctccggtagccgtgccggtggaattcgtacactttccgatctcaatcgtccatccggtcacgattccgacagcgattccgatggtccccaagaatactacaccggtggtgaaaaaagtggaatgcttgttcaagatccttcaaagcataatgatgtggactccatctttgaccgagctaggcaagtgggtgccacgcaaggtcctttggaaaatgtcgtccctagttcaagctcaacaagctttactggatctgcgagaacacttgcaggggagacagtgccaacatcagctcctcaaccacccgagtccatcgtgcacaatattgtcttctggagaaacggtttcactgtaaatgatggttctttgagaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="85855" stop="88654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86149" g_stop="86292" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87595" g_stop="87883" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="432" r_length="289" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88308" g_stop="88354" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="479" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E437383" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86149" e_stop="86292"/>
          <exon e_start="87595" e_stop="87883"/>
          <exon e_start="88308" e_stop="88354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAGGTACTTCTATCAATTGCTCAAACCCTAATTTCTCTCGCCATCATTCTCTATTCCTCAATTGATTAATCAGCTGTTGACTTTTACTCATCTATTCTCAATTCTATAAATCAGTCAACTATGAACTAACTATGTCAACATCGAAAACTTAGCTGAGAGCAGTATGTATGAATCTTCTATATTCATGAAGGGGATTTATGATAATTAGATTGTTTTCTTTTAAAATTCAAATGATGTTTCGTTACCTCTCCGTAGTTGCGTTGAGCTGAACATATACTAAACTGTTACATGTTTGCACGTTTTGATTCGGAATGATGTGTTAGAGTTTGCTAAAGCTGACGTGTTCCATGTGAATCGTATATTTGTTATGTTATTCTCAGCAAAAGGTAGGGCCTTTTACCATTTTCCTTTTCTAGTTTGTGAGCTTGTTCTTGTTAGAGGTTTTCTGTTGTAGTTGTGAGTTTCTTCTTGTTAGAGGGTACCGTATGGGATAAAAAGGTCGTATGTTTAGTTGCAGGTATTCTGACTCTTTTGTTGCTAGTGCAGAGCTGGTGGATTTAGAGAATTATAGTGAACTTTTGTTGATATTTTCAGGATGATTTTCTTGATCATGTTTTTATTGAGAAAAGGTGTTTCCTAAATAATACAGAGGTAAAAGTAGGGTGTCGGATGAGGTTTTTGTGTGTTTTGGGGTGGGAGTGGGGGAGATAAATCTTCAGGCTCAAATGGAAAAAAATTGGATATTGATAATTCTTATCGCCAATGTCAACTAGCTTGAGATTTAGGTGTTGTTGTCGTTGTGGCTAATAGGAGTGCTTGATCTGTTGGGGTGCTAAGAATTTATTATAGAAAAAGAAGATGGTGGCGAAAGGTAGGGGTAAGGTCTCCGTACACCCACTCTCCCCAGGCCATATGGGACTTCACTGGGTATATGACAATTGACATTTTCCAAAATTTAGACATTCATAAAAACCTTCCCAAAATGTATGTCAATTTGTTGGTTACGTCACTTATATTTTGTGGTTGTATGCTGTTTTCAACCATTCAGCTTTAATGTTGTTCTTATCCCAAAATCTAAGGTAGATTTTGTGCTAGGCAGATGTGTTATTGCTGAATGTGTCGCTTCTCGTGATTCTAACACTTGATTCATTTTAGTTGTACAATCTATGAATTGCCTACTATTCTTTTAGCTCTTTTTCTGCACATGGATGATTTGATAGATAGAACTTTAAAGGGGAGATAGAGACGCAAGCATGCCTATTACCTATAACTGTATCACTAATATAGCTATGATTATGCTTGTAGTGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATAC</genome_strand>
        <mrna_strand>CGA-GGCAAGAAACCCTCTAGGCAAACCTCCGGTAGCCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAATCGTCCATCCGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGTGGTGAAAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACGCAAGGTCCTTTGGAAAATGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCGAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCACCCGAGTCCATCGTGCACAATATTGTCTTCTGGAGAAACGGTTTCACTGTAAATGATGGTTCTTTGAGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270088" ref_strand="+" ref_description="SGN-E270088 [cLEM-7-B19]">
      <seq>tgatgtggactccatctttgaccgagctaggcaagtgggtgcgcacacaaggtcctttggaaagtgtcgtccctagttcaagctcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaactcaagcaacttctgagccatctgcttctgctcccacaagcagagtcccagcagcttccacaagtgttctggatgaatcattgccttcgacctcgcttcaaattagattggcagatggaagtcgcatggttgcacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="87328" stop="89252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87628" g_stop="87883" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="353" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88754" g_stop="88952" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="552" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E270088" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87628" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="88952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGC-CACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACT</genome_strand>
        <mrna_strand>TGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCGCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275730" ref_strand="+" ref_description="SGN-E275730 [cLEN-18-L6]">
      <seq>tcaacaagctttactggatctgcaagaacacttgcaggggagacagtgccaacatcagctcctcaaccgcccgagtccatcgtgcacaatattgtcttttggagaaatggtttcactgtaaatgatggtcctttacgaaggctggatgatcctgaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaactcaagcaacttctgagccatctgcttctgctcccacaagcagagtcccagcagcttccacaagtgttctggatgaatcattgccttcgacctcgcttcaaattagattggcagatggaagtcgcatggttgcacacttcaacttccaccaaactgttggcgacatccgtgccttcattgatgcttcaaggccaagtgacaccagggcatatcaactacaaactgttggatttcctcctaaaatgctcagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="87410" stop="89367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87710" g_stop="87883" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="270" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88754" g_stop="89067" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="584" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E275730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87710" e_stop="87883"/>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="89067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAGGTAACTGTAGTGAGCACTTCAATTAAAATTCATGATTAGGAACAAACATCATGGGTCGGTTGATTCTGCTAGATAGTCAGTAGTCGGCCTATTTTTCAGATTTACAAATTCATATCCTGCTAATGTTAATTGTCACTTTATATCATTACAATTTCTATTGTCCTCCTATTATCGGGAGTCTAGCGGCATGACATATGCAGATGGCTTTTGTAAGCTCCCCAATTGATGTAAATGCCCTCAGTGAGCATAGCTAGTTTTAATTTGAGGATCGTGCTTTTAAGCTGCCATGTTTTGTTGGTCATCTATTTCATATTCAAATTATCACTCTGTTTTACTAAATCTTTTGCTGGTTTTTTTCATGGTGTATTTGGTGATAAATATTTTCTATTTTGAATGACTTTTGGTTACTGGTTCTTCATTTCAGAGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGA</genome_strand>
        <mrna_strand>TCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377860" ref_strand="+" ref_description="SGN-E377860 [TUS-21-N13]">
      <seq>gaaaatgcatcttttctggagagtatcacaaagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaactcaagcaacttctgagccatctgcttctgctcccacaagcagagtcccagcagcttccacaagtgttctggatgaatcattgccttcgacctcgcttcaaattagattggcagatggaagtcgcatggttgcacacttcaacttccaccaaactgttggcgacatccgtgccttcattgatgcttcaaggccaagtgacaccagggcatatcaactacaaactgttggatttcctcctaaaatgctcagtgacccaacccaaacgattgagcaagcaggactggcaaattcagtggttatacaaaaattttaatgtgctctgccaaaactctcttttcgttttattatttccagatgtttcgatctatttactactggatattaatttttaatctatgtgaatctaaagctgtaccaagatagcagcaggtgttgtttaaaattcattttttcttaaactcaacgttgcacgggtattgtcccctaaaaaaaaaaacccggggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="87990" stop="89602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88308" g_stop="88403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="117" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88754" g_stop="89288" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="652" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="676"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E377860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88308" e_stop="88403"/>
          <exon e_start="88754" e_stop="89288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGACCCAACCCAAACGATTGAGCAAGCAGGACTGGCAAATTCAGTGGTTATACAAAAATTTTAATGTGCTCTGCCAAAACTCTCTTTTCGTTTTATTATTTCCAGATGTTTCGATCTATTTACTACTGGATATTAATTTTTAATCTATGTGAATCTAAAGCTGTACCAAGATAGCAGCAGGTGTTGTTTAAAATTCATTTTTTCTTAAACTCAACGTTGCACGG</genome_strand>
        <mrna_strand>AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGACCCAACCCAAACGATTGAGCAAGCAGGACTGGCAAATTCAGTGGTTATACAAAAATTTTAATGTGCTCTGCCAAAACTCTCTTTTCGTTTTATTATTTCCAGATGTTTCGATCTATTTACTACTGGATATTAATTTTTAATCTATGTGAATCTAAAGCTGTACCAAGATAGCAGCAGGTGTTGTTTAAAATTCATTTTTTCTTAAACTCAACGTTGCACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690801" ref_strand="+" ref_description="SGN-E690801 [LH_Ea04H07]">
      <seq>tagtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcctttcagggagtgggaagaacacttggaagcagcgcaactcaagcaacttctgagccatctgcttctgctcccacaagcagagtctcagcagcttccactagtgttctggatgaatcattgccttcgacctcgcttcaaattagattggcagatggaagtcgcatggttgcacacttcaacttccaccaaactgttggcgacatccgtgccttcattgatgcttcaaggccaagtgacaccagggcatatcaactacaaactgttggatttcctcctaaaatgctcagtgacccaacccaaacaattgagcaagcaggactggcgaattcagtggttatacaaaaattttaatgtgctctgccaaaactctcttttcgttttattatttccagatgtttcgatctatttactactggatattaatttttaatctatgtgaatctaaagctgtaccaagatagcagcaggtgttgtttaaaattcaatttttcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="88018" stop="89573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88317" g_stop="88403" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88754" g_stop="89282" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="616" r_length="529" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E690801" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88317" e_stop="88403"/>
          <exon e_start="88754" e_stop="89282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGACCCAACCCAAACGATTGAGCAAGCAGGACTGGCAAATTCAGTGGTTATACAAAAATTTTAATGTGCTCTGCCAAAACTCTCTTTTCGTTTTATTATTTCCAGATGTTTCGATCTATTTACTACTGGATATTAATTTTTAATCTATGTGAATCTAAAGCTGTACCAAGATAGCAGCAGGTGTTGTTTAAAATTCATTTTTTCTTAAACTCAACGTT</genome_strand>
        <mrna_strand>TAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCCTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCTCAGCAGCTTCCACTAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGACCCAACCCAAACAATTGAGCAAGCAGGACTGGCGAATTCAGTGGTTATACAAAAATTTTAATGTGCTCTGCCAAAACTCTCTTTTCGTTTTATTATTTCCAGATGTTTCGATCTATTTACTACTGGATATTAATTTTTAATCTATGTGAATCTAAAGCTGTACCAAGATAGCAGCAGGTGTTGTTTAAAATTCAATTTTTCTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694641" ref_strand="+" ref_description="SGN-E694641 [LH_Ea04H07](-)">
      <seq>agtctgaatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaactcaagcaacttctgagccatctgcttctgctcccacaagcagagtctcagcagcttccactagtgttctggatgaatcattgccttcgacctcgcttcaaattagattggcagatggaagtcgcatggttgcacacttcaacttccaccaaactgttggcgacatccgtgccttcattgatgcttcaaggccaagtgacaccagggcatatcaactacaaactgttggatttcctcctaaaatgctcagtgacccaacccaaacaattgagcaagcaggactggcgaattcagtggttatacaaaaattttaatgtgctctgccaaaactctcttttcgttttattatttccagatgtttcgatctatttactactggatattaatttttaatctatgtgaatctaaagctgtaccaagaaagcgagcaggtgttgtttaaaattcaatttttctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="88018" stop="89573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88318" g_stop="88403" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88754" g_stop="89282" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="616" r_length="530" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E694641" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88318" e_stop="88403"/>
          <exon e_start="88754" e_stop="89282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGACCCAACCCAAACGATTGAGCAAGCAGGACTGGCAAATTCAGTGGTTATACAAAAATTTTAATGTGCTCTGCCAAAACTCTCTTTTCGTTTTATTATTTCCAGATGTTTCGATCTATTTACTACTGGATATTAATTTTTAATCTATGTGAATCTAAAGCTGTACCAAGATAGC-AGCAGGTGTTGTTTAAAATTCATTTTTTCTTAAACTCAACGTT</genome_strand>
        <mrna_strand>AGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCTCAGCAGCTTCCACTAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGACCCAACCCAAACAATTGAGCAAGCAGGACTGGCGAATTCAGTGGTTATACAAAAATTTTAATGTGCTCTGCCAAAACTCTCTTTTCGTTTTATTATTTCCAGATGTTTCGATCTATTTACTACTGGATATTAATTTTTAATCTATGTGAATCTAAAGCTGTACCAAGAAAGCGAGCAGGTGTTGTTTAAAATTCAATTTTTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398365" ref_strand="+" ref_description="SGN-E398365 [TUS-43-I9](-)">
      <seq>aatgtcctagagagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccagagaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaactcaagcaacttctgagccatctgcttctgctcccacaagcagagtcccagcagcttccacaagtgttctggatgaatcattgccttcgacctcgcttcaaattagattggcagatggaagtcgcatggttgcacacttcaacttccaccaaactgttggcgacatccgtgccttcattgatgcttcaaggccaagtgacaccagggcatatcaactacaaactgttggatttcctcctaaaatgctcagtgacccaacccaaacgattgagcaagcaggactggcaaattcagtggttatacaaaaattttaatgtgctctgccaaaactctcttttcgttttattatttccagatgtttcgatctatttactactggatattaatttttaatctatgtgaatctaaagctgtaccaagatagcagacaggtgttgtttaaaattcattttttcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="88024" stop="89573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88324" g_stop="88403" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88754" g_stop="89282" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="610" r_length="530" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E398365" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88324" e_stop="88403"/>
          <exon e_start="88754" e_stop="89282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGACCCAACCCAAACGATTGAGCAAGCAGGACTGGCAAATTCAGTGGTTATACAAAAATTTTAATGTGCTCTGCCAAAACTCTCTTTTCGTTTTATTATTTCCAGATGTTTCGATCTATTTACTACTGGATATTAATTTTTAATCTATGTGAATCTAAAGCTGTACCAAGATAGCAG-CAGGTGTTGTTTAAAATTCATTTTTTCTTAAACTCAACGTT</genome_strand>
        <mrna_strand>AATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGACCCAACCCAAACGATTGAGCAAGCAGGACTGGCAAATTCAGTGGTTATACAAAAATTTTAATGTGCTCTGCCAAAACTCTCTTTTCGTTTTATTATTTCCAGATGTTTCGATCTATTTACTACTGGATATTAATTTTTAATCTATGTGAATCTAAAGCTGTACCAAGATAGCAGACAGGTGTTGTTTAAAATTCATTTTTTCTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377859" ref_strand="+" ref_description="SGN-E377859 [TUS-21-N13](-)">
      <seq>cctagaaagttggctcctgcagataccaggtcccaggtgcattgcaacctcataagaagggatgagaactgtcctgaaccaaaaaaacgccaagtttcgtttcagggagtgggaagaacacttggaagcagcgcaactcaagcaacttttgagccatttgcttttgctcccccaagcaaagtcccagcagcttccacaagtgttttggatgaatcattgccttcgacctcgcttcaaattagattggcaaatggaagtggcatggttgcccacttcaacttcccccaaactgttggcgacatccgtgccttcattgatgcttcaaggccaagtgacaccagggcatatcaactacaaactgttggatttcctcctaaaatgctcagtgacccaacccaaacgattgagcaagcaggactggcaaattcagtggttatacaaaaattttaatgtgctttgccaaaacttttttttcgttttattatttccaaatgtttcgatttatttactactggatattaatttttaatttatgtgaatttaaagctgtaccaaaatagcagcaggtgttgtttaaaattcatttttttttaaactcaacgttgcccgggtattgtccccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="88029" stop="91714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88329" g_stop="88403" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88754" g_stop="89288" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="610" r_length="535" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="624" polyA_stop="664"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E377859" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88329" e_stop="88403"/>
          <exon e_start="88754" e_stop="89288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCTGTAAGTATTGCATGTTCAGTCCACCATTTTTTTCATTTTTCATCTCCTTTGATGCACCAAATATGAAAATGGGACATTACAAGGAAGAGGAACAAGCTAATGAGTGCACATATACAACATTGGCCATAGTACCTTCGTTCTTTTGGATCTTTACTCTGTTATATAAGAAAGATTAGGGAAAGAACACGGGAACAAACCTATTTGGATATTCTTCTGTTTCTATCCCGTATCCCTAGATGTGCATCACTTTTGGTCCTCTGAACAGAAGTTTGGAAACCTGTGGCAGAATCTCTTCACTGGTATTGACTTCATTACTTTAATGTCACTAAACATGTGCAACACACTTGCAGGAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGACCCAACCCAAACGATTGAGCAAGCAGGACTGGCAAATTCAGTGGTTATACAAAAATTTTAATGTGCTCTGCCAAAACTCTCTTTTCGTTTTATTATTTCCAGATGTTTCGATCTATTTACTACTGGATATTAATTTTTAATCTATGTGAATCTAAAGCTGTACCAAGATAGCAGCAGGTGTTGTTTAAAATTCATTTTTTCTTAAACTCAACGTTGCACGG</genome_strand>
        <mrna_strand>CCTAGAAAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT..............................................................................................................................................................................................................................................................................................................................................................GAACCAAAAAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTTTGAGCCATTTGCTTTTGCTCCCCCAAGCAAAGTCCCAGCAGCTTCCACAAGTGTTTTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAAATGGAAGTGGCATGGTTGCCCACTTCAACTTCCCCCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGACCCAACCCAAACGATTGAGCAAGCAGGACTGGCAAATTCAGTGGTTATACAAAAATTTTAATGTGCTTTGCCAAAACTTTTTTTTCGTTTTATTATTTCCAAATGTTTCGATTTATTTACTACTGGATATTAATTTTTAATTTATGTGAATTTAAAGCTGTACCAAAATAGCAGCAGGTGTTGTTTAAAATTCATTTTTTTTTAAACTCAACGTTGCCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="96638" stop="95593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96338" g_stop="95891" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96338" e_stop="95891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTGTAAGTGTATAGAAAGAAGATATATGTTTTTCTCTCGCTCTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTGTAATTCGTT-GCCTTTTTCTCTGTAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAA-TTT-TCTCGCTTTATACAAAACAGAAACAGAATTTATACACTTCTGTTTATAAAGCGAGAGAGGTGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGGGAGAGATGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTACTCCATTTATTTTAGATTATTGC</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="96639" stop="95744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96339" g_stop="96018" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96339" e_stop="96018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTGTAAGTGTATAGAAAGAAGATATATGTTTTTCTCTCGCTCTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTGTAATTCGTT-GCCTTTTTCTCTGTAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAA-TTT-TCTCGCTTTATACAAAACAGAAACAGAATTTATACACTTCTGTTTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="96639" stop="95744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96339" g_stop="96035" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96339" e_stop="96035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTGTAAGTGTATAGAAAGAAGATATATGTTTTTCTCTCGCTCTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTGTAATTCGTT-GCCTTTTTCTCTGTAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAA-TTT-TCTCGCTTTATACAAAACAGAAACAGAATTTATACACTTCTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="96639" stop="95887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96339" g_stop="96187" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96339" e_stop="96187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTGTAAGTGTATAGAAAGAAGATATATGTTTTTCTCTCGCTCTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744991" ref_strand="+" ref_description="SGN-E744991 [GI|2529700]">
      <seq>aaagaaaaaaggaatattgtgtgtttgcttttttttctgactagtagtattgctaactatgtattccattaaggatttgctgtgaaaaagcctgatatcagtaagcataaaactcgggagatcacttacacacacacacaccctcctaaaaaagagaagagagatttactgttaaacagaggtttttttccatttctttttttttttcagtgtgtgtgtgagagaaagagatgattttcataggcacaaacaaatagaaaggaacaaaatttagagtgaagaagaaagtgtgtgagagaataatggagggtggttctagtggaaatactagtacatcttgtttaatgatgatgggatatggagatcatgaaaacaacaacaacaacaatggaaatggtaatggaaatggaaatggaaatgtaacaatttgtgctcctccaatgatgatgatgatgcctcctcctcctccttctttaactaacaataacaatgcagaaacaagcaacaacaacatcctttttcttcctttcatggacaacaacaacaacaataatcctcaagaagacaacaactcttcttcttcttccatcaagtcaaagattatggctcatcctcactaccatcgtctcttgactgcttatctcaattgtcaaaagataggagctccgccagaagtggtggcaaggctagaggaaatatgtgccacgtcagcaacaatgggccgtagcagtagtagtagtggtggtggaatcattggagaagatcctgcactagatcagttcatggaggcttattgtgagatgctgacaaaatatgaacaagaactctcaaaacccttcaaggaagccatggtttttctttcaagaattgagtgtcagttcaaagctttaactcttgcacctaattcttctcatgaatctgctttgggcgaggcaatggatagaaatggatcatctgatgaagaggttgacgtgaataacagtttcatcgacccccaggctgaggatagagagctcaaaggtcaattgttgcgtaagtacagcggttacttgggaagccttaagcaggagttcatgaagaagaggaagaaaggcaagctgcctaaggaagcaaggcaacaattggtggattggtggcttagacatattaaatggccatatccatcggaatctcagaagcttgcactagctgaatcaacgggattggaccagaagcaaataaacaactggtttatcaatcaaagaaagaggcattggaaaccatcagaagatatgcagtttgttgtgatggatgctgctcatccacattactatatggataatgttcttgctaaccatttcccaatggatatgacaccctctctcctctgaattaagatttgtcattattaatatcaaggatgtttaattaatttgcatattacttgtgtgcatgtagtagtacaagctattgtgacacaatcaactttttattagaccaaatatataaagtgcttgtaatagatctttctattatcatctttaattatggaattaaatagtttgtacttgctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="105085" stop="100577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104785" g_stop="104136" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104135" i_stop="103892" i_length="244">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103891" g_stop="103627" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="921" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103626" i_stop="101928" i_length="1699">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101927" g_stop="101683" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="922" r_stop="1166" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101682" i_stop="101264" i_length="419">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101263" g_stop="100877" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1167" r_stop="1553" r_length="387" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1554" polyA_stop="1570"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E744991" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1547</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104785" e_stop="104136"/>
          <exon e_start="103891" e_stop="103627"/>
          <exon e_start="101927" e_stop="101683"/>
          <exon e_start="101263" e_stop="100877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAAAAGGAATATTGTGTGTTTGCTTTTTTTTCTGACTAGTAGTATTGCTAACTATGTATTCCATTAAGGATTTGCTGTGAAAAAGCCTGATATCAGTAAGCATAAAACTCGGGAGATCACTT--ACACACACACACCCTCGTAAAAAAGAGAAGAGAGATTTACTGTTAAACAGAGGTTTTTTTCCATTTC-TTTTTTTTTTCTCAGTGTGTGTGAGAGAGAGAGATGGTTTTCATAGGCAAAAACAAATAGAAAGGAACAAAATTTAGAGTGAAGAAGAAAGTGTGTGAGAGAATAATGGAGGGTGGTTCTAGTGGAAATACTAGTACATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGG---ACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAGGTGAAATTCACCCCCCCCCCCCAATTAACACCAACAAAAAAAAATTCATTTTTTTTTCAACAATTCAAAGATTATATTTTTTAACATGGGTTTTAGTATTTCTTGAAATTTTGATGATTTTTTCTACCTTGAAAGTGACTCTCTGCAACAATTCAATAAAAAACCCTGAAAACAAAATCATGTGTGTGAAAGGGACAGTAGCTGAAAAAACCTAGTTTTTTTTTCTTCTTTTTAACAACTGCAGATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTGGTGAGATATATATATATCAAATTTTTTTTCTTCATTTCTTAAAATGGTGACATTTATTCTTTTCAGATCCTAACTGTTTACTTGAGTTTATTCTTTTATAAATTAATGTCCTCTGCATGTGCATGTTTCCAATGATATCAGTCATTAATTAATTATTATGTACTAATAAAATAAGCTCAATTCCATATGCAGACCATTTATTTTCAATTTTTTATCAATTTACTCTACCTTCTTGTATTTCACAATGATTTTTTAAAATAGTTTTGTTTCTGTCTCAATATTCAATGAAATACATCTGCCAGGGATACTACCTGGAATTTATATTAAAGAAAAAGAATAATTATCTTATTTTGGTTCTTGTTCTACATGTTCATAATATTTGTGTGGTGCTAGTTGTAAGTGTAAACAGCAAGATATATTTGTCCCTTGTTAATCATTTCAAACTGGATGCTTGTGTATGCTGAATAAACTCAACTTGTCTTGTTCTTTAGTGAGACCCATAAAATACTCTTGATTAGATTTGGAGCTTTTATTGGATTGTATCATATAACCTACTTGATGTGTTATACTTTTGTTTAAGTCATTGGATTATGTAGTTGGTGTTTTTTCATCAATACATCTTTTTTTTTTAATTACTCTTTTGAGTTTATTTCCTTTTTTTAGGGTGCAAATATCTAGTCGAATGTATTTCGGAATTCAAAGGATTCATCTTGGTGAATACGGCTTGCTTAGTTTGATCTAATTGTATATTTGTTCATATGCTTATTGACAAGTGTTTCCTTAATCAGCTAAATTTCTTTGGAAGTTTCTTTGCTTGGACTTTTTTATTCACATAATAGACAAAACATAGCAAACTTGTGAAGTTAATAATCTATAGGTACTCAATGGAGTCTTTAATGGGATAAAGAAGACGAAATTTGTTGAGTAGCTGTTGGGTTTCTGAAGGACCCACTGATTTAAAAAACTGAATCTTGAGGAGTCTAAAAGAAGCGAGGGCTTAACTGCTTGCAATTACGAGACAACTGAAGAAATTGGCTTTTTTTGGACTTAATTGCAACATGGATAGTTACTCTCATGTGTATTTTTTGATAAGTAGTAAATAGTAACGGGTCGTTTGGTGAGAAGGATACAAATAATTAGCGTGGGATAATAAAATAGTGATGGTATTAGAATTTTGTTTTTTGGTTGTCATGCTTGGGATAACTTATCTCACTATATTCACCATAGTGATTAGACCCATGGTGGGATAAATTATCCCAGAATACTAATTTGTTCCCAACCAAACGACTCTTGATAGTTCTCAAGTATATAGGGGTAGTTAAGTTTCTCATAAAATTTATAAGCTTCTTATTCTCTGCCTAGATTTAGTGTGAGTTATGAATCGCTTTGTTGTTTTTGATTGTATTAACTCTAGCATATTTTTGTTACTCTTCTTGTGTAAGAAACTACTGAGAAGTTTCCAAATGCCTAAGAGCAAAATGATTTATGTTAGCCTGTAGTGTTGGCTAATCTAACGTGCCAAACTTTTGATCACGTCCCAAGAGAACCAGCTGAGTACTCATACTCAAAGCTTATCTCGTATCCTAGTAGCTAGTGATTTTTACTATAATGTTATTATAAGCCAAGTTATATTCTCAACTATAGTTGTTCCTTTTTTTCTTGGAGAATGGTTATGCTAATTTAAGTCTTAAAGGTGTAGCTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATGAAGAGGTTGACGTGAATAACAGTTTCATCGACCCCCAGGCTGAGGATAGAGAGCTCAAAGGTCAATTGTTGCGTAAGTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAGGAAGCAAGGCAACAATTGGTGGATTGGTGGCTTAGACATATTAAATGGCCATATCCATCGGTATGATCCTCCTTCATTCCTATTAATAACTTCACTTCTTGACTCTATACACTCTGTTAATTTCACCTTATGTCCCTTAGTAATCCATACAAAAAGAATGACACTCTTAAATTTTAAAACATAATGTTACGGGTGCACGAAGTTTTCGCTTGGTCTTCATTCTGAATTAAAGCTAATATCACTTAAATTAGAAAAGTAAAAGTATTGCTTTTCTAAATTGTTAAATAAATCAGTCCTTAGCTCAATATCTACATATTAATTCTACTCTACTAGGATGATCACTTCATTGTAAGACCATATATTGTTTTTCGCTTGCCTTATCAGACAAGGTTGTGATGTGTGTCCATCTTATATACAATAATGACAATGCATAGTTATTTTACGCGGTCAAGTTACATTGCGCGATTCTTGGTTTACAGGAATCTCAGAAGCTTGCACTAGCTGAATCAACGGGATTGGACCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGAAAGAGGCATTGGAAACCATCAGAAGATATGCAGTTTGTTGTGATGGATGCTGCTCATCCACATTACTATATGGATAATGTTCTTGCTAACCATTTCCCAATGGATATGACACCCTCTCTCCTCTGAATTAAGATTTGTCATTATTAGTATCAAGGATGTTTAATTAATTTGCATATTACTTGTGTGCATGTAGTAGTACAAGGTATTGTGACACAATCAACTTTTTATTAGACCAAATATATAAAGTGCTTGTAATAGATCTTTCTATTATCATCTTTAATTATAGAATTAAATAGTTTGTACTTGCTA</genome_strand>
        <mrna_strand>AAAGAAAAAAGGAATATTGTGTGTTTGCTTTTTTTTCTGACTAGTAGTATTGCTAACTATGTATTCCATTAAGGATTTGCTGTGAAAAAGCCTGATATCAGTAAGCATAAAACTCGGGAGATCACTTACACACACACACACCCTCCTAAAAAAGAGAAGAGAGATTTACTGTTAAACAGAGGTTTTTTTCCATTTCTTTTTTTTTTTCAGTGTGTGTGTGAGAGAAAGAGATGATTTTCATAGGCACAAACAAATAGAAAGGAACAAAATTTAGAGTGAAGAAGAAAGTGTGTGAGAGAATAATGGAGGGTGGTTCTAGTGGAAATACTAGTACATCTTGTTTAATGATGATGGGATATGGAGATCATGAAAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAACAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAG....................................................................................................................................................................................................................................................ATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATGAAGAGGTTGACGTGAATAACAGTTTCATCGACCCCCAGGCTGAGGATAGAGAGCTCAAAGGTCAATTGTTGCGTAAGTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAGGAAGCAAGGCAACAATTGGTGGATTGGTGGCTTAGACATATTAAATGGCCATATCCATCG...................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCAGAAGCTTGCACTAGCTGAATCAACGGGATTGGACCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGAAAGAGGCATTGGAAACCATCAGAAGATATGCAGTTTGTTGTGATGGATGCTGCTCATCCACATTACTATATGGATAATGTTCTTGCTAACCATTTCCCAATGGATATGACACCCTCTCTCCTCTGAATTAAGATTTGTCATTATTAATATCAAGGATGTTTAATTAATTTGCATATTACTTGTGTGCATGTAGTAGTACAAGCTATTGTGACACAATCAACTTTTTATTAGACCAAATATATAAAGTGCTTGTAATAGATCTTTCTATTATCATCTTTAATTATGGAATTAAATAGTTTGTACTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376525" ref_strand="+" ref_description="SGN-E376525 [TUS-17-F19](-)">
      <seq>aatggatcatctgataaagaggttgacgtgaataacagtttcatcgacccccaggctgaggatagagagctcaaaggtcaattgttgcgtaagtacagcggttacttgggaagccttaagcaggagttcatgaagaagaggaagaaaggcaagctgcctaaggaagcaaggcaacaattggtggattggtggcttagacatattaaatggccatatccatcggaatctcagaagcttgcactagctgaatcaacgggattggaccagaagcaaataaacaactggtttatcaatcaaagaaagaggcattggaaaccatcagaagatatgcagtttgttgtgatggatgctgctcatccacattactatatggataatgttcttgctaaccatttcccaatggatatgacaccctctctcctctgaattaagatttgtcattattagtatcaaggatgtttaattaatttgcatattacttgtgtgcatgtagtagtacaaggtattgtgacacaatcaactttttattagaccaaatatataaagtgcttgtaatagatctttctattatcatctttaattatagaattaaatagtttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="102204" stop="100584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101904" g_stop="101683" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101682" i_stop="101264" i_length="419">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101263" g_stop="100887" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="599" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="602" polyA_stop="611"/>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E376525" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101904" e_stop="101683"/>
          <exon e_start="101263" e_stop="100887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGATCATCTGATGAAGAGGTTGACGTGAATAACAGTTTCATCGACCCCCAGGCTGAGGATAGAGAGCTCAAAGGTCAATTGTTGCGTAAGTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAGGAAGCAAGGCAACAATTGGTGGATTGGTGGCTTAGACATATTAAATGGCCATATCCATCGGTATGATCCTCCTTCATTCCTATTAATAACTTCACTTCTTGACTCTATACACTCTGTTAATTTCACCTTATGTCCCTTAGTAATCCATACAAAAAGAATGACACTCTTAAATTTTAAAACATAATGTTACGGGTGCACGAAGTTTTCGCTTGGTCTTCATTCTGAATTAAAGCTAATATCACTTAAATTAGAAAAGTAAAAGTATTGCTTTTCTAAATTGTTAAATAAATCAGTCCTTAGCTCAATATCTACATATTAATTCTACTCTACTAGGATGATCACTTCATTGTAAGACCATATATTGTTTTTCGCTTGCCTTATCAGACAAGGTTGTGATGTGTGTCCATCTTATATACAATAATGACAATGCATAGTTATTTTACGCGGTCAAGTTACATTGCGCGATTCTTGGTTTACAGGAATCTCAGAAGCTTGCACTAGCTGAATCAACGGGATTGGACCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGAAAGAGGCATTGGAAACCATCAGAAGATATGCAGTTTGTTGTGATGGATGCTGCTCATCCACATTACTATATGGATAATGTTCTTGCTAACCATTTCCCAATGGATATGACACCCTCTCTCCTCTGAATTAAGATTTGTCATTATTAGTATCAAGGATGTTTAATTAATTTGCATATTACTTGTGTGCATGTAGTAGTACAAGGTATTGTGACACAATCAACTTTTTATTAGACCAAATATATAAAGTGCTTGTAATAGATCTTTCTATTATCATCTTTAATTATAGAATTAAATAGTTT</genome_strand>
        <mrna_strand>AATGGATCATCTGATAAAGAGGTTGACGTGAATAACAGTTTCATCGACCCCCAGGCTGAGGATAGAGAGCTCAAAGGTCAATTGTTGCGTAAGTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAGGAAGCAAGGCAACAATTGGTGGATTGGTGGCTTAGACATATTAAATGGCCATATCCATCG...................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCAGAAGCTTGCACTAGCTGAATCAACGGGATTGGACCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGAAAGAGGCATTGGAAACCATCAGAAGATATGCAGTTTGTTGTGATGGATGCTGCTCATCCACATTACTATATGGATAATGTTCTTGCTAACCATTTCCCAATGGATATGACACCCTCTCTCCTCTGAATTAAGATTTGTCATTATTAGTATCAAGGATGTTTAATTAATTTGCATATTACTTGTGTGCATGTAGTAGTACAAGGTATTGTGACACAATCAACTTTTTATTAGACCAAATATATAAAGTGCTTGTAATAGATCTTTCTATTATCATCTTTAATTATAGAATTAAATAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744935" ref_strand="+" ref_description="SGN-E744935 [GI|4098239]">
      <seq>agatcgcggcgacgtgggcggttccgtgcccgcgacgtcgcagaagtccattgaaccttatcatttagagtgaagaagaaagtgtgtgagagaataatggagggtggttctagtggaaatactagtacatcttgtttaatgatgatgggatatggagatcatgagaacaacaacaacaacaatggaaatggtaatggaaatggaaatggaaatgtaacaatttgtgctcctccaatgatgatgatgatgcctcctcctcctccttctttaactaacaataacaatgcagaaacaagcagcaacaacatcctttttcttcctttcatggacaacaacaacaataatcctcaagaagacaacaactcttcttcttcttccatcaagtcaaagattatgctcaatcctcactaccatcgtctcttgactgcttatctcaattgtcaaaagataggagctccgccagaagtggtggcaaggctagaggaaatatgtgccacgtcagcaacaatgggccgtagcagtagtagtagtggtggtggaatcattggagaagatcctgcactagatcagttcatggaggcttattgtgagatgctgacaaaatatgaacaagaactctcaaaacccttcaaggaagccatggtttttctttcaagaattgagtgtcagttcaaagctttaactcttgcacctaattcttctcatgaatctgctttgggcgaggcaatggatagaaatggatcatctgatgaagaggttgacgtgaataacagtttcatcgacccccaggctgaggatagagagctcaaaggtcaattgttgcgtaagtacagcggttacttgggaagccttaagcaggagttcatgaagaagaggaagaaaggcaagctgcctaaggaagcaaggcaacaattggtggattggtggcttagacatattaaatggccatatccatcggaatctcagaagcttgcactagctgaatcaacgggattggaccagaagcaaataaacaactggtttatcaatcaaagaaagaggcattggaaaccatcagaagatatgcagtttgttgtgatggatgctgctcatccacattactatatggataatgttcttgctaaccatttcccaatggatatgacaccctctctcctctgaattaagatttgtcattattagtatcaaggatgtttaattaatttgcatattacttgtgtgcatgtagtagtacaaggtattgtgacacaatcaactttttattagaccaaatatataaagtgctgtaatagatctttctattatcatctttaattataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="104820" stop="100591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104520" g_stop="104136" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="447" r_length="385" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104135" i_stop="103892" i_length="244">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103891" g_stop="103627" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="712" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103626" i_stop="101928" i_length="1699">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101927" g_stop="101683" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="957" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101682" i_stop="101264" i_length="419">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101263" g_stop="100889" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="958" r_stop="1331" r_length="374" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E744935" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1270</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104520" e_stop="104136"/>
          <exon e_start="103891" e_stop="103627"/>
          <exon e_start="101927" e_stop="101683"/>
          <exon e_start="101263" e_stop="100889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGAGTGAAGAAGAAAGTGTGTGAGAGAATAATGGAGGGTGGTTCTAGTGGAAATACTAGTACATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTC-ATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAGGTGAAATTCACCCCCCCCCCCCAATTAACACCAACAAAAAAAAATTCATTTTTTTTTCAACAATTCAAAGATTATATTTTTTAACATGGGTTTTAGTATTTCTTGAAATTTTGATGATTTTTTCTACCTTGAAAGTGACTCTCTGCAACAATTCAATAAAAAACCCTGAAAACAAAATCATGTGTGTGAAAGGGACAGTAGCTGAAAAAACCTAGTTTTTTTTTCTTCTTTTTAACAACTGCAGATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTGGTGAGATATATATATATCAAATTTTTTTTCTTCATTTCTTAAAATGGTGACATTTATTCTTTTCAGATCCTAACTGTTTACTTGAGTTTATTCTTTTATAAATTAATGTCCTCTGCATGTGCATGTTTCCAATGATATCAGTCATTAATTAATTATTATGTACTAATAAAATAAGCTCAATTCCATATGCAGACCATTTATTTTCAATTTTTTATCAATTTACTCTACCTTCTTGTATTTCACAATGATTTTTTAAAATAGTTTTGTTTCTGTCTCAATATTCAATGAAATACATCTGCCAGGGATACTACCTGGAATTTATATTAAAGAAAAAGAATAATTATCTTATTTTGGTTCTTGTTCTACATGTTCATAATATTTGTGTGGTGCTAGTTGTAAGTGTAAACAGCAAGATATATTTGTCCCTTGTTAATCATTTCAAACTGGATGCTTGTGTATGCTGAATAAACTCAACTTGTCTTGTTCTTTAGTGAGACCCATAAAATACTCTTGATTAGATTTGGAGCTTTTATTGGATTGTATCATATAACCTACTTGATGTGTTATACTTTTGTTTAAGTCATTGGATTATGTAGTTGGTGTTTTTTCATCAATACATCTTTTTTTTTTAATTACTCTTTTGAGTTTATTTCCTTTTTTTAGGGTGCAAATATCTAGTCGAATGTATTTCGGAATTCAAAGGATTCATCTTGGTGAATACGGCTTGCTTAGTTTGATCTAATTGTATATTTGTTCATATGCTTATTGACAAGTGTTTCCTTAATCAGCTAAATTTCTTTGGAAGTTTCTTTGCTTGGACTTTTTTATTCACATAATAGACAAAACATAGCAAACTTGTGAAGTTAATAATCTATAGGTACTCAATGGAGTCTTTAATGGGATAAAGAAGACGAAATTTGTTGAGTAGCTGTTGGGTTTCTGAAGGACCCACTGATTTAAAAAACTGAATCTTGAGGAGTCTAAAAGAAGCGAGGGCTTAACTGCTTGCAATTACGAGACAACTGAAGAAATTGGCTTTTTTTGGACTTAATTGCAACATGGATAGTTACTCTCATGTGTATTTTTTGATAAGTAGTAAATAGTAACGGGTCGTTTGGTGAGAAGGATACAAATAATTAGCGTGGGATAATAAAATAGTGATGGTATTAGAATTTTGTTTTTTGGTTGTCATGCTTGGGATAACTTATCTCACTATATTCACCATAGTGATTAGACCCATGGTGGGATAAATTATCCCAGAATACTAATTTGTTCCCAACCAAACGACTCTTGATAGTTCTCAAGTATATAGGGGTAGTTAAGTTTCTCATAAAATTTATAAGCTTCTTATTCTCTGCCTAGATTTAGTGTGAGTTATGAATCGCTTTGTTGTTTTTGATTGTATTAACTCTAGCATATTTTTGTTACTCTTCTTGTGTAAGAAACTACTGAGAAGTTTCCAAATGCCTAAGAGCAAAATGATTTATGTTAGCCTGTAGTGTTGGCTAATCTAACGTGCCAAACTTTTGATCACGTCCCAAGAGAACCAGCTGAGTACTCATACTCAAAGCTTATCTCGTATCCTAGTAGCTAGTGATTTTTACTATAATGTTATTATAAGCCAAGTTATATTCTCAACTATAGTTGTTCCTTTTTTTCTTGGAGAATGGTTATGCTAATTTAAGTCTTAAAGGTGTAGCTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATGAAGAGGTTGACGTGAATAACAGTTTCATCGACCCCCAGGCTGAGGATAGAGAGCTCAAAGGTCAATTGTTGCGTAAGTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAGGAAGCAAGGCAACAATTGGTGGATTGGTGGCTTAGACATATTAAATGGCCATATCCATCGGTATGATCCTCCTTCATTCCTATTAATAACTTCACTTCTTGACTCTATACACTCTGTTAATTTCACCTTATGTCCCTTAGTAATCCATACAAAAAGAATGACACTCTTAAATTTTAAAACATAATGTTACGGGTGCACGAAGTTTTCGCTTGGTCTTCATTCTGAATTAAAGCTAATATCACTTAAATTAGAAAAGTAAAAGTATTGCTTTTCTAAATTGTTAAATAAATCAGTCCTTAGCTCAATATCTACATATTAATTCTACTCTACTAGGATGATCACTTCATTGTAAGACCATATATTGTTTTTCGCTTGCCTTATCAGACAAGGTTGTGATGTGTGTCCATCTTATATACAATAATGACAATGCATAGTTATTTTACGCGGTCAAGTTACATTGCGCGATTCTTGGTTTACAGGAATCTCAGAAGCTTGCACTAGCTGAATCAACGGGATTGGACCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGAAAGAGGCATTGGAAACCATCAGAAGATATGCAGTTTGTTGTGATGGATGCTGCTCATCCACATTACTATATGGATAATGTTCTTGCTAACCATTTCCCAATGGATATGACACCCTCTCTCCTCTGAATTAAGATTTGTCATTATTAGTATCAAGGATGTTTAATTAATTTGCATATTACTTGTGTGCATGTAGTAGTACAAGGTATTGTGACACAATCAACTTTTTATTAGACCAAATATATAAAGTGCTTGTAATAGATCTTTCTATTATCATCTTTAATTATAGAATTAAATAGT</genome_strand>
        <mrna_strand>ATTTAGAGTGAAGAAGAAAGTGTGTGAGAGAATAATGGAGGGTGGTTCTAGTGGAAATACTAGTACATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTAT-GCTCAATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAG....................................................................................................................................................................................................................................................ATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATGAAGAGGTTGACGTGAATAACAGTTTCATCGACCCCCAGGCTGAGGATAGAGAGCTCAAAGGTCAATTGTTGCGTAAGTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAGGAAGCAAGGCAACAATTGGTGGATTGGTGGCTTAGACATATTAAATGGCCATATCCATCG...................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCAGAAGCTTGCACTAGCTGAATCAACGGGATTGGACCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGAAAGAGGCATTGGAAACCATCAGAAGATATGCAGTTTGTTGTGATGGATGCTGCTCATCCACATTACTATATGGATAATGTTCTTGCTAACCATTTCCCAATGGATATGACACCCTCTCTCCTCTGAATTAAGATTTGTCATTATTAGTATCAAGGATGTTTAATTAATTTGCATATTACTTGTGTGCATGTAGTAGTACAAGGTATTGTGACACAATCAACTTTTTATTAGACCAAATATATAAAGTGC-TGTAATAGATCTTTCTATTATCATCTTTAATTATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398628" ref_strand="+" ref_description="SGN-E398628 [TUS-44-E6](-)">
      <seq>ggtcaattgtttgcgtaattacagcggttacttgggaagccttaagcaggagttcatgaagaagaggaagaaaggcaagctgcctaaggaagcaaggcaacaattggtggattggtggcttagacatattaaatggccatatccttcggaatctcagaagcttgcactagctgaatcaacgaaaaaaaaccagaagcaaataaacaactggtttatcaatcaaagaaagaggcattggaaaccatcagaagatatgcagtttgttgtgatggatgctgctcatccacattactatatggataatgttcttgctaaccatttcccaatggatatgacacctttttttttttgaattaagatttgttattattagtataaaggatgtttaattaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="102129" stop="100715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101829" g_stop="101683" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101682" i_stop="101264" i_length="419">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101263" g_stop="101015" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="397" r_length="249" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E398628" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101829" e_stop="101683"/>
          <exon e_start="101263" e_stop="101015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAATTG-TTGCGTAAGTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAGGAAGCAAGGCAACAATTGGTGGATTGGTGGCTTAGACATATTAAATGGCCATATCCATCGGTATGATCCTCCTTCATTCCTATTAATAACTTCACTTCTTGACTCTATACACTCTGTTAATTTCACCTTATGTCCCTTAGTAATCCATACAAAAAGAATGACACTCTTAAATTTTAAAACATAATGTTACGGGTGCACGAAGTTTTCGCTTGGTCTTCATTCTGAATTAAAGCTAATATCACTTAAATTAGAAAAGTAAAAGTATTGCTTTTCTAAATTGTTAAATAAATCAGTCCTTAGCTCAATATCTACATATTAATTCTACTCTACTAGGATGATCACTTCATTGTAAGACCATATATTGTTTTTCGCTTGCCTTATCAGACAAGGTTGTGATGTGTGTCCATCTTATATACAATAATGACAATGCATAGTTATTTTACGCGGTCAAGTTACATTGCGCGATTCTTGGTTTACAGGAATCTCAGAAGCTTGCACTAGCTGAATCAACGGGATTGGACCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGAAAGAGGCATTGGAAACCATCAGAAGATATGCAGTTTGTTGTGATGGATGCTGCTCATCCACATTACTATATGGATAATGTTCTTGCTAACCATTTCCCAATGGATATGACACCCTCTCTCCTCTGAATTAAGATTTGTCATTATTAGTATCAAGGATGTTTAATTAATTTG</genome_strand>
        <mrna_strand>GGTCAATTGTTTGCGTAATTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAGGAAGCAAGGCAACAATTGGTGGATTGGTGGCTTAGACATATTAAATGGCCATATCCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCAGAAGCTTGCACTAGCTGAATCAACGAAAAAAAACCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGAAAGAGGCATTGGAAACCATCAGAAGATATGCAGTTTGTTGTGATGGATGCTGCTCATCCACATTACTATATGGATAATGTTCTTGCTAACCATTTCCCAATGGATATGACACCTTTTTTTTTTTGAATTAAGATTTGTTATTATTAGTATAAAGGATGTTTAATTAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210337" ref_strand="+" ref_description="SGN-E210337 [cLEC-35-D19]">
      <seq>cttcttcttccatcaagtcaaagattatggctcatcctcactaccatcgtctcttgactgtttatttttatttttcaaaagataggagctccgccagaagtggtggcaaggctagaggaaatatgtgccacgtcagcaacaatgggccgtagcagtagtagtagtggtggtggaatcattggagaagatcctgcactagatcagttcatggaggcttattgtgagatgctgacaaaatatgaacaagaactctcaaaacccttcaaggaagccatggtttttctttcaagaattgagtgtcagttcaaagctttaactcttgcacctaattcttctcatgaatctggtgtagctttgggcgaggcaatggatagaaatggatcatctgatgaagaggttgacgtgaataacagtttcatcgacccccaggctgaggatagagagctcaaaggtcaattgttgcgtaagtacagcggttacttgggaagccttaagcaggagttcatgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="104515" stop="101469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104215" g_stop="104136" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104135" i_stop="103892" i_length="244">
            <donor d_prob="0.986" d_score="0.86"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103891" g_stop="103627" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="346" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103626" i_stop="101934" i_length="1693">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101933" g_stop="101769" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="511" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E210337" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104215" e_stop="104136"/>
          <exon e_start="103891" e_stop="103627"/>
          <exon e_start="101933" e_stop="101769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTA-TCTCAATTGTCAAAAGGTGAAATTCACCCCCCCCCCCCAATTAACACCAACAAAAAAAAATTCATTTTTTTTTCAACAATTCAAAGATTATATTTTTTAACATGGGTTTTAGTATTTCTTGAAATTTTGATGATTTTTTCTACCTTGAAAGTGACTCTCTGCAACAATTCAATAAAAAACCCTGAAAACAAAATCATGTGTGTGAAAGGGACAGTAGCTGAAAAAACCTAGTTTTTTTTTCTTCTTTTTAACAACTGCAGATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTGGTGAGATATATATATATCAAATTTTTTTTCTTCATTTCTTAAAATGGTGACATTTATTCTTTTCAGATCCTAACTGTTTACTTGAGTTTATTCTTTTATAAATTAATGTCCTCTGCATGTGCATGTTTCCAATGATATCAGTCATTAATTAATTATTATGTACTAATAAAATAAGCTCAATTCCATATGCAGACCATTTATTTTCAATTTTTTATCAATTTACTCTACCTTCTTGTATTTCACAATGATTTTTTAAAATAGTTTTGTTTCTGTCTCAATATTCAATGAAATACATCTGCCAGGGATACTACCTGGAATTTATATTAAAGAAAAAGAATAATTATCTTATTTTGGTTCTTGTTCTACATGTTCATAATATTTGTGTGGTGCTAGTTGTAAGTGTAAACAGCAAGATATATTTGTCCCTTGTTAATCATTTCAAACTGGATGCTTGTGTATGCTGAATAAACTCAACTTGTCTTGTTCTTTAGTGAGACCCATAAAATACTCTTGATTAGATTTGGAGCTTTTATTGGATTGTATCATATAACCTACTTGATGTGTTATACTTTTGTTTAAGTCATTGGATTATGTAGTTGGTGTTTTTTCATCAATACATCTTTTTTTTTTAATTACTCTTTTGAGTTTATTTCCTTTTTTTAGGGTGCAAATATCTAGTCGAATGTATTTCGGAATTCAAAGGATTCATCTTGGTGAATACGGCTTGCTTAGTTTGATCTAATTGTATATTTGTTCATATGCTTATTGACAAGTGTTTCCTTAATCAGCTAAATTTCTTTGGAAGTTTCTTTGCTTGGACTTTTTTATTCACATAATAGACAAAACATAGCAAACTTGTGAAGTTAATAATCTATAGGTACTCAATGGAGTCTTTAATGGGATAAAGAAGACGAAATTTGTTGAGTAGCTGTTGGGTTTCTGAAGGACCCACTGATTTAAAAAACTGAATCTTGAGGAGTCTAAAAGAAGCGAGGGCTTAACTGCTTGCAATTACGAGACAACTGAAGAAATTGGCTTTTTTTGGACTTAATTGCAACATGGATAGTTACTCTCATGTGTATTTTTTGATAAGTAGTAAATAGTAACGGGTCGTTTGGTGAGAAGGATACAAATAATTAGCGTGGGATAATAAAATAGTGATGGTATTAGAATTTTGTTTTTTGGTTGTCATGCTTGGGATAACTTATCTCACTATATTCACCATAGTGATTAGACCCATGGTGGGATAAATTATCCCAGAATACTAATTTGTTCCCAACCAAACGACTCTTGATAGTTCTCAAGTATATAGGGGTAGTTAAGTTTCTCATAAAATTTATAAGCTTCTTATTCTCTGCCTAGATTTAGTGTGAGTTATGAATCGCTTTGTTGTTTTTGATTGTATTAACTCTAGCATATTTTTGTTACTCTTCTTGTGTAAGAAACTACTGAGAAGTTTCCAAATGCCTAAGAGCAAAATGATTTATGTTAGCCTGTAGTGTTGGCTAATCTAACGTGCCAAACTTTTGATCACGTCCCAAGAGAACCAGCTGAGTACTCATACTCAAAGCTTATCTCGTATCCTAGTAGCTAGTGATTTTTACTATAATGTTATTATAAGCCAAGTTATATTCTCAACTATAGTTGTTCCTTTTTTTCTTGGAGAATGGTTATGCTAATTTAAGTCTTAAAGGTGTAGCTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATGAAGAGGTTGACGTGAATAACAGTTTCATCGACCCCCAGGCTGAGGATAGAGAGCTCAAAGGTCAATTGTTGCGTAAGTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGA</genome_strand>
        <mrna_strand>CTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGTTTATTTTTATTTTTCAAAAG....................................................................................................................................................................................................................................................ATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAGCTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATGAAGAGGTTGACGTGAATAACAGTTTCATCGACCCCCAGGCTGAGGATAGAGAGCTCAAAGGTCAATTGTTGCGTAAGTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317741" ref_strand="+" ref_description="SGN-E317741 [cTOA-30-G13]">
      <seq>aaacaaatagaaaggaacaaaatttagagtgaagaagaaagtgtgtgagagaataatggagggtggttctagtggaaatactagtacatcttgtttaatgatgatgggatatggagatcatgagaacaacaacaacaacaatggaaatggtaatggaaatggaaatggaaatgtaacaatttgtgctcctccaatgatgatgatgatgcctcctcctcctccttctttaactaacaataacaatgcagaaacaagcagcaacaacatcctttttcttcctttcatggacaacaacaacaataatcctcaagaagacaacaactcttcttcttcttccatcaagtcaaagattatggctcatcctcactaccatcgtctcttgactgcttatctcaattgtcaaaagataggagctccgccagaagtggtggcaaggctagaggaaatatgtgccacgtcagcaacaatgggccgtagcagtagtagtagtggtggtggaatcattggagaagatcctgcactagatcagttcatggaggcttattgtgagatgctgacaaaatatgaacaagaactctcaaaacccttcaaggaagccatggtttttctttcnagaatttgagtgtcagttcaaagctttaactcttgcacctaattcttctcatgaatctggtgtagctttgggcgaggcaatggatagaaatggatcatctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="104841" stop="101588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104541" g_stop="104136" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104135" i_stop="103892" i_length="244">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103891" g_stop="103627" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="672" r_length="266" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103626" i_stop="101934" i_length="1693">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101933" g_stop="101888" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="718" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E317741" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104541" e_stop="104136"/>
          <exon e_start="103891" e_stop="103627"/>
          <exon e_start="101933" e_stop="101888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAATAGAAAGGAACAAAATTTAGAGTGAAGAAGAAAGTGTGTGAGAGAATAATGGAGGGTGGTTCTAGTGGAAATACTAGTACATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAGGTGAAATTCACCCCCCCCCCCCAATTAACACCAACAAAAAAAAATTCATTTTTTTTTCAACAATTCAAAGATTATATTTTTTAACATGGGTTTTAGTATTTCTTGAAATTTTGATGATTTTTTCTACCTTGAAAGTGACTCTCTGCAACAATTCAATAAAAAACCCTGAAAACAAAATCATGTGTGTGAAAGGGACAGTAGCTGAAAAAACCTAGTTTTTTTTTCTTCTTTTTAACAACTGCAGATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAA-TTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTGGTGAGATATATATATATCAAATTTTTTTTCTTCATTTCTTAAAATGGTGACATTTATTCTTTTCAGATCCTAACTGTTTACTTGAGTTTATTCTTTTATAAATTAATGTCCTCTGCATGTGCATGTTTCCAATGATATCAGTCATTAATTAATTATTATGTACTAATAAAATAAGCTCAATTCCATATGCAGACCATTTATTTTCAATTTTTTATCAATTTACTCTACCTTCTTGTATTTCACAATGATTTTTTAAAATAGTTTTGTTTCTGTCTCAATATTCAATGAAATACATCTGCCAGGGATACTACCTGGAATTTATATTAAAGAAAAAGAATAATTATCTTATTTTGGTTCTTGTTCTACATGTTCATAATATTTGTGTGGTGCTAGTTGTAAGTGTAAACAGCAAGATATATTTGTCCCTTGTTAATCATTTCAAACTGGATGCTTGTGTATGCTGAATAAACTCAACTTGTCTTGTTCTTTAGTGAGACCCATAAAATACTCTTGATTAGATTTGGAGCTTTTATTGGATTGTATCATATAACCTACTTGATGTGTTATACTTTTGTTTAAGTCATTGGATTATGTAGTTGGTGTTTTTTCATCAATACATCTTTTTTTTTTAATTACTCTTTTGAGTTTATTTCCTTTTTTTAGGGTGCAAATATCTAGTCGAATGTATTTCGGAATTCAAAGGATTCATCTTGGTGAATACGGCTTGCTTAGTTTGATCTAATTGTATATTTGTTCATATGCTTATTGACAAGTGTTTCCTTAATCAGCTAAATTTCTTTGGAAGTTTCTTTGCTTGGACTTTTTTATTCACATAATAGACAAAACATAGCAAACTTGTGAAGTTAATAATCTATAGGTACTCAATGGAGTCTTTAATGGGATAAAGAAGACGAAATTTGTTGAGTAGCTGTTGGGTTTCTGAAGGACCCACTGATTTAAAAAACTGAATCTTGAGGAGTCTAAAAGAAGCGAGGGCTTAACTGCTTGCAATTACGAGACAACTGAAGAAATTGGCTTTTTTTGGACTTAATTGCAACATGGATAGTTACTCTCATGTGTATTTTTTGATAAGTAGTAAATAGTAACGGGTCGTTTGGTGAGAAGGATACAAATAATTAGCGTGGGATAATAAAATAGTGATGGTATTAGAATTTTGTTTTTTGGTTGTCATGCTTGGGATAACTTATCTCACTATATTCACCATAGTGATTAGACCCATGGTGGGATAAATTATCCCAGAATACTAATTTGTTCCCAACCAAACGACTCTTGATAGTTCTCAAGTATATAGGGGTAGTTAAGTTTCTCATAAAATTTATAAGCTTCTTATTCTCTGCCTAGATTTAGTGTGAGTTATGAATCGCTTTGTTGTTTTTGATTGTATTAACTCTAGCATATTTTTGTTACTCTTCTTGTGTAAGAAACTACTGAGAAGTTTCCAAATGCCTAAGAGCAAAATGATTTATGTTAGCCTGTAGTGTTGGCTAATCTAACGTGCCAAACTTTTGATCACGTCCCAAGAGAACCAGCTGAGTACTCATACTCAAAGCTTATCTCGTATCCTAGTAGCTAGTGATTTTTACTATAATGTTATTATAAGCCAAGTTATATTCTCAACTATAGTTGTTCCTTTTTTTCTTGGAGAATGGTTATGCTAATTTAAGTCTTAAAGGTGTAGCTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATGA</genome_strand>
        <mrna_strand>AAACAAATAGAAAGGAACAAAATTTAGAGTGAAGAAGAAAGTGTGTGAGAGAATAATGGAGGGTGGTTCTAGTGGAAATACTAGTACATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAG....................................................................................................................................................................................................................................................ATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCNAGAATTTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAGCTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240205" ref_strand="+" ref_description="SGN-E240205 [cLED-25-E14]">
      <seq>catcttgtttaatgatgatgggatatggagatcatgagaacaacaacaacaacaatggaaatggtaatggaaatggaaatggaaatgtaacaatttgtgctcctccaatgatgatgatgatgcctcctcctcctccttctttaactaacaataacaatgcagaaacaagcagcaacaacatcctttttcttcctttcatggacaacaacaacaataatcctcaagaagacaacaactcttcttcttcttccatcaagtcaaagattatggctcatcctcactaccatcgtctcttgactgcttatctcaattgtcaaaagataggagctccgccagaagtggtggcaaggctagaggaaatatgtgccacgtcagcaacaatgggccgtagcagtagtagtagtggtggtggaatcattggagaagatcctgcactagatcagttcatggaggcttattgtgagatgctgacaaaatatgaacaagaactctcaaaacccttcaaggaagccatggtttttctttcaagaattgagtgtcagttcaaagctttaactcttgcacctaattcttctcatgaatctgctttgggcgaggcaatggatagaaatggatcatctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="104755" stop="101589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104455" g_stop="104136" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104135" i_stop="103892" i_length="244">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103891" g_stop="103627" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="585" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103626" i_stop="101928" i_length="1699">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.086" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101927" g_stop="101889" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="624" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E240205" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104455" e_stop="104136"/>
          <exon e_start="103891" e_stop="103627"/>
          <exon e_start="101927" e_stop="101889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAGGTGAAATTCACCCCCCCCCCCCAATTAACACCAACAAAAAAAAATTCATTTTTTTTTCAACAATTCAAAGATTATATTTTTTAACATGGGTTTTAGTATTTCTTGAAATTTTGATGATTTTTTCTACCTTGAAAGTGACTCTCTGCAACAATTCAATAAAAAACCCTGAAAACAAAATCATGTGTGTGAAAGGGACAGTAGCTGAAAAAACCTAGTTTTTTTTTCTTCTTTTTAACAACTGCAGATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTGGTGAGATATATATATATCAAATTTTTTTTCTTCATTTCTTAAAATGGTGACATTTATTCTTTTCAGATCCTAACTGTTTACTTGAGTTTATTCTTTTATAAATTAATGTCCTCTGCATGTGCATGTTTCCAATGATATCAGTCATTAATTAATTATTATGTACTAATAAAATAAGCTCAATTCCATATGCAGACCATTTATTTTCAATTTTTTATCAATTTACTCTACCTTCTTGTATTTCACAATGATTTTTTAAAATAGTTTTGTTTCTGTCTCAATATTCAATGAAATACATCTGCCAGGGATACTACCTGGAATTTATATTAAAGAAAAAGAATAATTATCTTATTTTGGTTCTTGTTCTACATGTTCATAATATTTGTGTGGTGCTAGTTGTAAGTGTAAACAGCAAGATATATTTGTCCCTTGTTAATCATTTCAAACTGGATGCTTGTGTATGCTGAATAAACTCAACTTGTCTTGTTCTTTAGTGAGACCCATAAAATACTCTTGATTAGATTTGGAGCTTTTATTGGATTGTATCATATAACCTACTTGATGTGTTATACTTTTGTTTAAGTCATTGGATTATGTAGTTGGTGTTTTTTCATCAATACATCTTTTTTTTTTAATTACTCTTTTGAGTTTATTTCCTTTTTTTAGGGTGCAAATATCTAGTCGAATGTATTTCGGAATTCAAAGGATTCATCTTGGTGAATACGGCTTGCTTAGTTTGATCTAATTGTATATTTGTTCATATGCTTATTGACAAGTGTTTCCTTAATCAGCTAAATTTCTTTGGAAGTTTCTTTGCTTGGACTTTTTTATTCACATAATAGACAAAACATAGCAAACTTGTGAAGTTAATAATCTATAGGTACTCAATGGAGTCTTTAATGGGATAAAGAAGACGAAATTTGTTGAGTAGCTGTTGGGTTTCTGAAGGACCCACTGATTTAAAAAACTGAATCTTGAGGAGTCTAAAAGAAGCGAGGGCTTAACTGCTTGCAATTACGAGACAACTGAAGAAATTGGCTTTTTTTGGACTTAATTGCAACATGGATAGTTACTCTCATGTGTATTTTTTGATAAGTAGTAAATAGTAACGGGTCGTTTGGTGAGAAGGATACAAATAATTAGCGTGGGATAATAAAATAGTGATGGTATTAGAATTTTGTTTTTTGGTTGTCATGCTTGGGATAACTTATCTCACTATATTCACCATAGTGATTAGACCCATGGTGGGATAAATTATCCCAGAATACTAATTTGTTCCCAACCAAACGACTCTTGATAGTTCTCAAGTATATAGGGGTAGTTAAGTTTCTCATAAAATTTATAAGCTTCTTATTCTCTGCCTAGATTTAGTGTGAGTTATGAATCGCTTTGTTGTTTTTGATTGTATTAACTCTAGCATATTTTTGTTACTCTTCTTGTGTAAGAAACTACTGAGAAGTTTCCAAATGCCTAAGAGCAAAATGATTTATGTTAGCCTGTAGTGTTGGCTAATCTAACGTGCCAAACTTTTGATCACGTCCCAAGAGAACCAGCTGAGTACTCATACTCAAAGCTTATCTCGTATCCTAGTAGCTAGTGATTTTTACTATAATGTTATTATAAGCCAAGTTATATTCTCAACTATAGTTGTTCCTTTTTTTCTTGGAGAATGGTTATGCTAATTTAAGTCTTAAAGGTGTAGCTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATG</genome_strand>
        <mrna_strand>CATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAG....................................................................................................................................................................................................................................................ATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317738" ref_strand="+" ref_description="SGN-E317738 [cTOA-30-E17]">
      <seq>aaacaaatagaaaggaacaaaatttagagtgaagaagaaagtgtgtgagagaataatggagggtggttctagtggaaatactagtacatcttgtttaatgatgatgggatatggagatcatgagaacaacaacaacaacaatggaaatggtaatggaaatggaaatggaaatgtaacaatttgtgctcctccaatgatgatgatgatgcctcctcctcctccttctttaactaacaataacaatgcagaaacaagcagcaacaacatcctttttcttcctttcatggacaacaacaacaataatcctcaagaagacaacaactcttcttcttcttccatcaagtcaaagattatggctcatcctcactaccatcgtctcttgactgcttatctcaattgtcaaaagataggagctccgccagaagtggtggcaaggctagaggaaatatgtgccacgtcagcaacaatgggccgtagcagtagtagtagtggtggtggaatcattggagaagatcctgcactagatcagttcatggaggcttattgtgagatgctgacaaaatatgaacaagaactctcaaaacccttcaaggaagccatggtttttctttcaagaattgagtgtcagttcaaagctttaactcttgcacctaattcttctcatgaatctggtgtagctttgggcgaagcaatggatagaaatggatcatctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="104841" stop="101590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104541" g_stop="104136" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104135" i_stop="103892" i_length="244">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103891" g_stop="103627" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="671" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103626" i_stop="101934" i_length="1693">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101933" g_stop="101890" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="715" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E317738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104541" e_stop="104136"/>
          <exon e_start="103891" e_stop="103627"/>
          <exon e_start="101933" e_stop="101890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAATAGAAAGGAACAAAATTTAGAGTGAAGAAGAAAGTGTGTGAGAGAATAATGGAGGGTGGTTCTAGTGGAAATACTAGTACATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAGGTGAAATTCACCCCCCCCCCCCAATTAACACCAACAAAAAAAAATTCATTTTTTTTTCAACAATTCAAAGATTATATTTTTTAACATGGGTTTTAGTATTTCTTGAAATTTTGATGATTTTTTCTACCTTGAAAGTGACTCTCTGCAACAATTCAATAAAAAACCCTGAAAACAAAATCATGTGTGTGAAAGGGACAGTAGCTGAAAAAACCTAGTTTTTTTTTCTTCTTTTTAACAACTGCAGATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTGGTGAGATATATATATATCAAATTTTTTTTCTTCATTTCTTAAAATGGTGACATTTATTCTTTTCAGATCCTAACTGTTTACTTGAGTTTATTCTTTTATAAATTAATGTCCTCTGCATGTGCATGTTTCCAATGATATCAGTCATTAATTAATTATTATGTACTAATAAAATAAGCTCAATTCCATATGCAGACCATTTATTTTCAATTTTTTATCAATTTACTCTACCTTCTTGTATTTCACAATGATTTTTTAAAATAGTTTTGTTTCTGTCTCAATATTCAATGAAATACATCTGCCAGGGATACTACCTGGAATTTATATTAAAGAAAAAGAATAATTATCTTATTTTGGTTCTTGTTCTACATGTTCATAATATTTGTGTGGTGCTAGTTGTAAGTGTAAACAGCAAGATATATTTGTCCCTTGTTAATCATTTCAAACTGGATGCTTGTGTATGCTGAATAAACTCAACTTGTCTTGTTCTTTAGTGAGACCCATAAAATACTCTTGATTAGATTTGGAGCTTTTATTGGATTGTATCATATAACCTACTTGATGTGTTATACTTTTGTTTAAGTCATTGGATTATGTAGTTGGTGTTTTTTCATCAATACATCTTTTTTTTTTAATTACTCTTTTGAGTTTATTTCCTTTTTTTAGGGTGCAAATATCTAGTCGAATGTATTTCGGAATTCAAAGGATTCATCTTGGTGAATACGGCTTGCTTAGTTTGATCTAATTGTATATTTGTTCATATGCTTATTGACAAGTGTTTCCTTAATCAGCTAAATTTCTTTGGAAGTTTCTTTGCTTGGACTTTTTTATTCACATAATAGACAAAACATAGCAAACTTGTGAAGTTAATAATCTATAGGTACTCAATGGAGTCTTTAATGGGATAAAGAAGACGAAATTTGTTGAGTAGCTGTTGGGTTTCTGAAGGACCCACTGATTTAAAAAACTGAATCTTGAGGAGTCTAAAAGAAGCGAGGGCTTAACTGCTTGCAATTACGAGACAACTGAAGAAATTGGCTTTTTTTGGACTTAATTGCAACATGGATAGTTACTCTCATGTGTATTTTTTGATAAGTAGTAAATAGTAACGGGTCGTTTGGTGAGAAGGATACAAATAATTAGCGTGGGATAATAAAATAGTGATGGTATTAGAATTTTGTTTTTTGGTTGTCATGCTTGGGATAACTTATCTCACTATATTCACCATAGTGATTAGACCCATGGTGGGATAAATTATCCCAGAATACTAATTTGTTCCCAACCAAACGACTCTTGATAGTTCTCAAGTATATAGGGGTAGTTAAGTTTCTCATAAAATTTATAAGCTTCTTATTCTCTGCCTAGATTTAGTGTGAGTTATGAATCGCTTTGTTGTTTTTGATTGTATTAACTCTAGCATATTTTTGTTACTCTTCTTGTGTAAGAAACTACTGAGAAGTTTCCAAATGCCTAAGAGCAAAATGATTTATGTTAGCCTGTAGTGTTGGCTAATCTAACGTGCCAAACTTTTGATCACGTCCCAAGAGAACCAGCTGAGTACTCATACTCAAAGCTTATCTCGTATCCTAGTAGCTAGTGATTTTTACTATAATGTTATTATAAGCCAAGTTATATTCTCAACTATAGTTGTTCCTTTTTTTCTTGGAGAATGGTTATGCTAATTTAAGTCTTAAAGGTGTAGCTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGAT</genome_strand>
        <mrna_strand>AAACAAATAGAAAGGAACAAAATTTAGAGTGAAGAAGAAAGTGTGTGAGAGAATAATGGAGGGTGGTTCTAGTGGAAATACTAGTACATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAG....................................................................................................................................................................................................................................................ATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAGCTTTGGGCGAAGCAATGGATAGAAATGGATCATCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241470" ref_strand="+" ref_description="SGN-E241470 [cLED-28-K23]">
      <seq>catcttgtttaatgatgatgggatatggagatcatgagaacaacaacaacaacaatggaaatggtaatggaaatggaaatggaaatgtaacaatttgtgctcctccaatgatgataatgatgcctcctcctcctccttctttaactaacaataacaatgcataaacaagcatcaacaacatactttttcttcctttcatgaacaacaacaacaataatcctcaagaagacaacaactcttcttcttcttccatcaagacaaagattatggctcatcctcactaccatcgtctcttgactgcttatctcaattgtcaaaacataggagctccgccagaagtggtggtaaggctagaggaaatatgtgccacgtcagcaacaatgggccgtatcagtagtagtagtggtgctggaatcattggagaagatcctgcactagatcaggtcatggaggcttattgtgagatgctgacaaaatatgaacaagaactctcaaaacccttcaaggaagccatggtttttctttctagaattgagtgtcagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="104755" stop="103367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104455" g_stop="104136" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104135" i_stop="103892" i_length="244">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103891" g_stop="103667" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="545" r_length="225" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E241470" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104455" e_stop="104136"/>
          <exon e_start="103891" e_stop="103667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAGGTGAAATTCACCCCCCCCCCCCAATTAACACCAACAAAAAAAAATTCATTTTTTTTTCAACAATTCAAAGATTATATTTTTTAACATGGGTTTTAGTATTTCTTGAAATTTTGATGATTTTTTCTACCTTGAAAGTGACTCTCTGCAACAATTCAATAAAAAACCCTGAAAACAAAATCATGTGTGTGAAAGGGACAGTAGCTGAAAAAACCTAGTTTTTTTTTCTTCTTTTTAACAACTGCAGATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTC</genome_strand>
        <mrna_strand>CATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATAATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCATAAACAAGCATCAACAACATACTTTTTCTTCCTTTCATGAACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGACAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAC....................................................................................................................................................................................................................................................ATAGGAGCTCCGCCAGAAGTGGTGGTAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTATCAGTAGTAGTAGTGGTGCTGGAATCATTGGAGAAGATCCTGCACTAGATCAGGTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCTAGAATTGAGTGTCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="108606" stop="109854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108906" g_stop="109554" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108906" e_stop="109554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="108607" stop="109591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108907" g_stop="109291" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108907" e_stop="109291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="109265" stop="110672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109565" g_stop="110372" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109565" e_stop="110372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554121" ref_strand="+" ref_description="SGN-E554121 [cTSC-3-E3]">
      <seq>aaaaagcctggtcatattccagaatgtcaatttagagagctcctcaaatattggaattctgaaaaattcaagaaaatgtctgaaacaaatgcaaagaatcgaaagaaaatgatgaatccacaaactactggcaaaaagagtttcgctttagttcgtaataagctggagaaagataaggagacagtatcatctaaggatctctttgtggttacaagaacaagaaaacctggtcgtttgtacaaggcctcaaatgaagatactactataggctgaaatggaggaaattgaaaaacaaataagcataaatggtgagtatgttgatgcattttcaagcgtcatgggtcctgaacatccgggacgtctaagactatatggcgcaggagttacaaagactactttgaaaaaaaaagttggcaattcggaatcaactttaagtgcaacaactgatggaatgcagcaaatgcaagagaggatgcagaaaatggagaaacagatggaggaacaaaagaaaattgtgcgacaagaagttattgcagatgttattgcacaacttaagcatgcaggattaattgatcctaatatattggcaacattgtcgactccttcaccaagagaatctacttttgtttaaggggctaaacaaggtgatgaaatcgaagaaagggatgaaagcagtagtgaagacttgacataggagctgaagtatatattgatgtaaactttattgatgttctagaaatcatatatttttgaagattgaaaattctatggcatggtgttcaccttttttggattctataaaaagatttgtatattttggatcttgaattctaattaaggtaatgaacatttattctcgttaacgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="126124" stop="128921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126424" g_stop="126495" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126496" i_stop="126652" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126653" g_stop="126744" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="165" r_length="93" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126745" i_stop="126837" i_length="93">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126838" g_stop="126937" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="265" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126938" i_stop="127020" i_length="83">
            <donor d_prob="0.229" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127021" g_stop="127399" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="644" r_length="379" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="127400" i_stop="128376" i_length="977">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128377" g_stop="128550" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="818" r_length="174" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E554121" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126424" e_stop="126495"/>
          <exon e_start="126653" e_stop="126744"/>
          <exon e_start="126838" e_stop="126937"/>
          <exon e_start="127021" e_stop="127399"/>
          <exon e_start="128377" e_stop="128550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTCCTCAAATATTGGAATTCTGAAAAATTCAAGGTAAAAATGTAGTTCAGAATCTCAATTTTTTGAATAAGTAGAATTTGTATTTGGTACTTTATTGTAATATTTGCACCTTCTTTCTTCATTTATTGTGATAGTCACATGCATTTTACAAGACACCTTCGATTAACATTACTGATTCATTTCTTTGCAAAAAATGTCTGAAACAAATGCAAAGAATCGAAA-AAAATGATGAATCCACACACTACTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTGGTGAGTTCTCTTATATATTTTTTTTAATGAAATTTTCTTTTGGATCTCTTCCGGTGTGAGTTTATTTTTTTATATATATTTCAATTTGACTAGGAGAAAGATAAGGAGACAGTATCATCTAAGGATCTCTTTGTGGTTACAAGAACAAGAAAACTTGGTCGTTTGTACAAGGTCTCAAATGAAGATACTACTAGTAAAATTGTATGTGCCTGTCTATTTTTTTTATTGAGATCAATTATTTATTTCATAAGATTGTGTTTGTTGGATATGCTTTGATAGGCTGAAATGGAGGAAATTGAAAAACAAATAAGCATAAATGGTGAGTATGTTAATGCATTTTCAAGCGTCATGGATCCTGAACATCCGGGACGTCTAAGACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAGTTTGGCAATTTGGAATCAACTTTAAGTGCAACAACTGATGGAATGTAGCAAATGAAAGAGAGGATGCAGAAAATGGAGAAACAGATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGCAGATGTTATTGCACAACTTAAGCATGAAGGATTAATTGATCCTAACATATTGACAGCATTGTCGACTCCTTCACCAAGAGAATCTACTTCTGTTCAAGGGGCTAAACAAGGTTGGTATCGCTAATTCTATGTTTTGATTGATATTTGTTGTTGCTACTTGCTATAGAATTAGAATAAAATAGTATGCTATTGATCTAAGGAAGTTGGGGAAAAGTTAGGCAGAGGATCAGTAAATGCCTGATTCATGAGTATAATTAATGTCTGAGTTGCTGCTTGTTCTCTGATAGTCTGAGTTGCTGCTTGTAGTCTGGTTCATGAGTTTTCTGGTGCTGCTTGTAGCCTAGTAGAGGACCAGTTGTTAGATTCATGATTTTTTTGATACTTGCTGCTTGTAGTCTGGTTTCTTGTGGTTTCTTCTTTATGTTAATTAAACATGTCTCTTGTAGCATGATAGTGTTGTTTCTACTGCTTGTAGTTTGGACTCTTGATTCTGCTGCTGGTCTCTTGTTTCTGCTGCTGGTTTCTTGTAGCATTATAGTGTTGAATCCTAGCTTCACGATTATGTTTAGTCGAGCCAACGTAGTAGCTAATTGCTGAATGTATAGTGGTCTGGTCTCTTGATTCTGCTGCTTGTAGAAGTTTAAATGCAGCTAGCAGTTTAATGTTATTGGCATGTGTAGTAGTCTGGTCTCTTGATTCTGCTGCTGCTTGTAGAAGTTTAAATACAGCTAGCAGTTGAATGTTATTGGCATGTGTAGTAGTTTGGTCTCTTGTTTCTGCTGCTGCTTGTAGAAGTTTGAATGCAGCTAGCAGTTGAATGTTATTGGCATGCATAGTAGTCTGGTCTCTTGTTTCTACTGCTACTTGTGGAAGTTTGAATGCAGCTAGCAGTATAGTAGTCTGGTGTCTTTTATTTTGTTGCTGCTTGTAGCAGTTGAATGTTATTGAATGCAACAAGCAGTTCAATGTCTCTTGATTCTGTTTAATGTCTCTTGATTCTGCTGCTGCTAATGCATGGTTGTAATATGTTAATTTCACAGATTTGAGGTTTGCTAAATTATTTATATTTTTTTCTGATTATATGTAGGTGATGAAATCGAAGAAAGGGATGAAAGCAGTAGTGAAGACTTGACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATATTTTTGAAGATTGAAAATTCTATGGCATGTGTTTCACCTTTTTTGGATGCTATAAAAAGATTTGTATATTTT</genome_strand>
        <mrna_strand>AAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTCCTCAAATATTGGAATTCTGAAAAATTCAAG.............................................................................................................................................................AAAATGTCTGAAACAAATGCAAAGAATCGAAAGAAAATGATGAATCCACAAACTACTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTG.............................................................................................GAGAAAGATAAGGAGACAGTATCATCTAAGGATCTCTTTGTGGTTACAAGAACAAGAAAACCTGGTCGTTTGTACAAGGCCTCAAATGAAGATACTACTA...................................................................................TAGGCTGAAATGGAGGAAATTGAAAAACAAATAAGCATAAATGGTGAGTATGTTGATGCATTTTCAAGCGTCATGGGTCCTGAACATCCGGGACGTCTAAGACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAAGTTGGCAATTCGGAATCAACTTTAAGTGCAACAACTGATGGAATGCAGCAAATGCAAGAGAGGATGCAGAAAATGGAGAAACAGATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGCAGATGTTATTGCACAACTTAAGCATGCAGGATTAATTGATCCTAATATATTGGCAACATTGTCGACTCCTTCACCAAGAGAATCTACTTTTGTTTAAGGGGCTAAACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAAATCGAAGAAAGGGATGAAAGCAGTAGTGAAGACTTGACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATATTTTTGAAGATTGAAAATTCTATGGCATGGTGTTCACCTTTTTTGGATTCTATAAAAAGATTTGTATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468241" ref_strand="+" ref_description="SGN-E468241 [cSTB-3-E3]">
      <seq>gagacttcgatgcagatgtaattttcatgcctctgaaatttgttccaaagatagaagaaactggagctttacttataccggagaatgcgtcagaatgttacacgtttgggacccttggatcgtcacctagtgggtcccttctcaaagtctatgctgaagggtgaacgaaatcgtggagaaaaagttgctagatatttagctttgcatatgaggtttgaaattgatatggtagctcattccctctgtgaatatggtgggggtgaagaagaaagaaatgaactggaagcatatcgtgaaatccacttccctgcattagtggagcttaagaagaccacaaagttgccttccccagcagctctaaaggctgaaggattgtgtcctttaatgcctgaagagacggtgctaatgcttgctgcccttggttttaatcggcagacacgcatatacttggcaggtgcacatatctatggaggcaaatcaagattagcctccttgaccaccttgtatcctaatctggtcacaaaggaaagcttactttcctcttccgagattgaaccattcatgaatttctcatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="137204" stop="135324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136904" g_stop="136569" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136568" i_stop="135863" i_length="706">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135862" g_stop="135624" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="577" r_length="239" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E468241" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136904" e_stop="136569"/>
          <exon e_start="135862" e_stop="135624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTTCGATGCAGATGTAATTTTCATG-CTCTGAAATTTGTTCCAAAGATAGAAGAAACTGGAGCTTTACTTATA-CGGAGAATGCGTCAGAATGTTACACGCTTGGGACCCTTGGATCGTCACCTAGTGGGTCCCTTCTCAAAGTCTATGCTGAAGGGTGAACATAATCGTGGAGAAAAAGTAGCTAGATATTTAGCTTTGCATCTGAGGTTTGAAATTGATATGGTGGCTCATTCCCTCTGTGAATATGGTGGGGGTGAAGAAGAAAGAAATGAACTGGAATTATATCGTGAAATCCACTTCCCTGCATTAGTGGAACTCAAGAAGACCACAAAGTATGTTATATGTAATCATTGCTCAATTCCTTTACTTGATGCACAACTCATAAGAAAAAGCTAGGCTGACTTGTTTGATTTTCCTAGACTGGTGCTTGCATCTTTGATTATCCAGAGAGTGCACCAGACACACACACACAAACATATTGAACTAAGGGCCTGTTTGATTTGAAGAAAAATGTTTCCATGGAAATAAGTGGTTTTCTTACATATTTTCTGCTGTTTAATAAGTAAACAAAAAAAATTGTTCCAAAAGCATTTGTATATATCTAGGAAAACACTATGGAGGTGGGGTGGGTTGTAGGATGGGGAGGAGGAGATGATCATCGGTGAATGTCACTTATGGAGCTTTATTTTGCCTACTTTTACAAGGGAAGCTCTTCATTTTAAAGGAACTTGATTTCCTTGAGATAATGTTTTTCAAAATTTTGTCCAAATATGAGAAAATTGGAAAATAGTAGCTTCTTATCTCTCTAGCATCTGGAGGTGTTCACGTCTTCTTGTTGCGGAAGTGGGTGGGGTCTCTGGATTACCTCTTATCGGACAATTTTAATTAAGCATGTCAAAGTGATGAGTAGTATTTTCTTCATAGATGCCAAATGACCTTAACCTATTTCTAGAGACATGTCATTGAGGTTATAACATTCAAATTTATTTAAAACTAGTCTCAGCTCAATTATTGATTCTGAAAAAAGTGTTTGTTCAGGTTGCCTTCCCCAGCAACTCTAAAGGCTGAAGGATTGTGTCCTTTAATGCCTGAAGAGACAGTGCTAATGCTTGCTGCCCTTGGTTTTAATCGGCAGACACGCATATACTTGGCAGGTGCACATATCTATGGAGGCAAATCAAGATTGGCCTCCTTGACCACCTTGTATCCTAATCTGGTCACAAAGGAAAGCTTACTTTCCTCTTCTGAGATTGAACCATTCATGAATTTCTCTTCTC</genome_strand>
        <mrna_strand>GAGACTTCGATGCAGATGTAATTTTCATGCCTCTGAAATTTGTTCCAAAGATAGAAGAAACTGGAGCTTTACTTATACCGGAGAATGCGTCAGAATGTTACACGTTTGGGACCCTTGGATCGTCACCTAGTGGGTCCCTTCTCAAAGTCTATGCTGAAGGGTGAACGAAATCGTGGAGAAAAAGTTGCTAGATATTTAGCTTTGCATATGAGGTTTGAAATTGATATGGTAGCTCATTCCCTCTGTGAATATGGTGGGGGTGAAGAAGAAAGAAATGAACTGGAAGCATATCGTGAAATCCACTTCCCTGCATTAGTGGAGCTTAAGAAGACCACAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCTTCCCCAGCAGCTCTAAAGGCTGAAGGATTGTGTCCTTTAATGCCTGAAGAGACGGTGCTAATGCTTGCTGCCCTTGGTTTTAATCGGCAGACACGCATATACTTGGCAGGTGCACATATCTATGGAGGCAAATCAAGATTAGCCTCCTTGACCACCTTGTATCCTAATCTGGTCACAAAGGAAAGCTTACTTTCCTCTTCCGAGATTGAACCATTCATGAATTTCTCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434042" ref_strand="+" ref_description="SGN-E434042 [STM-59-I16]">
      <seq>acatcttattttgataaccgagaaatccgttctcgacccgccctttggaccaatcacagcctgtgttttcctagatatatacaaatgcttttggaacaattttatttgtttacttaccaaacaacagaaaatatgtaaggaaaccacttatttccatgaaaacatttttcttcaaatcaaacagacccttagctcaatatgtttgtgtgtgtgtcaggtgcaatctctggataatcaaagatgcaaacaacagtctaggaaaatcaaacaagttagcctagctttttcttatgagttgtgcaagtaaaggaattgagcaatgattatatataacatacttcgtggtcttcttaagctccactaatgcagggaagtggatttcacgatatgcttccagttcatttctttcttcttcacccccaccgtattcacagagcgaatgagctaccatatcaatttcaaacctcatatgcaaagctaaatatctagcaactttttctccacgatttcgttcacccttcagcatagactttgagaagggacccactaggtgacgatccaagggtcccaaacgtgtaacattctgacgcattctccgtataagtaaagctccagtttcttctatctttggaacaaatttcagagcatgaaaattacatctgcatcgaagtctctagatgaagtccccaaatcanggaccaacgtagaagttatggaatcagactaaatgagaagatgaaatgaaaatttgagaaatcaacaaggaagcctaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="135978" stop="137307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136289" g_stop="137007" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="777" r_length="714" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E434042" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136289" e_stop="137007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCCTAGATATATACAAATGCTTTTGGAACAATTTTTTTTGTTTACTTATTAAACAGCAGAAAATATGTAAGAAAACCACTTATTTCCATGGAAACATTTTTCTTCAAATCAAACAGGCCCTTAGTTCAATATGTTTGTGTGTGTGTGTCTGGTGCACTCTCTGGATAATCAAAGATGCAAGCACCAGTCTAGGAAAATCAAACAAGTCAGCCTAGCTTTTTCTTATGAGTTGTGCATCAAGTAAAGGAATTGAGCAATGATTACATATAACATACTTTGTGGTCTTCTTGAGTTCCACTAATGCAGGGAAGTGGATTTCACGATATAATTCCAGTTCATTTCTTTCTTCTTCACCCCCACCATATTCACAGAGGGAATGAGCCACCATATCAATTTCAAACCTCAGATGCAAAGCTAAATATCTAGCTACTTTTTCTCCACGATTATGTTCACCCTTCAGCATAGACTTTGAGAAGGGACCCACTAGGTGACGATCCAAGGGTCCCAAGCGTGTAACATTCTGACGCATTCTCCGTATAAGTAAAGCTCCAGTTTCTTCTATCTTTGGAACAAATTTCAGAGCATGAAAATTACATCTGCATCGAAGTCTCTAGATGAAGTCCCCAAATCAGGAACCAAGGTAGAAATTATGGAATCAGACTAAATGAGAAGATAATATGAAAAATTGAGAAATCAACAAGGAAGCCTAATATC</genome_strand>
        <mrna_strand>TGTTTTCCTAGATATATACAAATGCTTTTGGAACAATTTTATTTGTTTACTTACCAAACAACAGAAAATATGTAAGGAAACCACTTATTTCCATGAAAACATTTTTCTTCAAATCAAACAGACCCTTAGCTCAATATG-TT-TGTGTGTGTGTCAGGTGCAATCTCTGGATAATCAAAGATGCAAACAACAGTCTAGGAAAATCAAACAAGTTAGCCTAGCTTTTTCTTATGAGTTGTG---CAAGTAAAGGAATTGAGCAATGATTATATATAACATACTTCGTGGTCTTCTTAAGCTCCACTAATGCAGGGAAGTGGATTTCACGATATGCTTCCAGTTCATTTCTTTCTTCTTCACCCCCACCGTATTCACAGAGCGAATGAGCTACCATATCAATTTCAAACCTCATATGCAAAGCTAAATATCTAGCAACTTTTTCTCCACGATTTCGTTCACCCTTCAGCATAGACTTTGAGAAGGGACCCACTAGGTGACGATCCAAGGGTCCCAAACGTGTAACATTCTGACGCATTCTCCGTATAAGTAAAGCTCCAGTTTCTTCTATCTTTGGAACAAATTTCAGAGCATGAAAATTACATCTGCATCGAAGTCTCTAGATGAAGTCCCCAAATCANGGACCAACGTAGAAGTTATGGAATCAGACTAAATGAGAAGATGAAATGAAAATTTGAGAAATCAACAAGGAAGCCTAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206785" ref_strand="+" ref_description="SGN-E206785 [cLEC-31-J4]">
      <seq>agtcattagatctagaggccattggcagtttggtgacagatgcagatgttgtaaaagaagcaaagccaggtttctacaagaaatatattcttcctattttacataaaaacggagttgttcattttcttggatttgggaatcgattggcatctgacccgttaccacctcaggtgcaggtaaacccatcgaacttgatattaggcttccttgttgatttctcaatttttcatattatcttctcatttagtctgattccataatttctaccttggttcctgatttggggacttcatctagagacttcgatgcagatgtaattttcatgctctgaaatttgttccaaagatagaagaaactggagctttacttatacggagaatgcgtcagaatgttacacgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="137581" stop="136499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137281" g_stop="137250" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137249" i_stop="137169" i_length="81">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137168" g_stop="136799" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="402" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E206785" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137281" e_stop="137250"/>
          <exon e_start="137168" e_stop="136799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATTAGATCTAGAGGCCATTGGCAGTTTGGTAAGACTCTCATCTAGATAAATCATTTTGAATATGATCATGTGAAGAAACTAGTTTCTGACAATCTTGAAATAAATCCAGGTGACAGATGCAGATGTTGTAAAAGAAGCAAAGCCAGGTTTCTACAAGAAATATATTCTTCCTATTTTACATAAAAACGGAGTTGTTCATTTTCTTGGATTTGGGAATCGATTGGCATCTGACCCGTTACCACCTCAGGTGCAGGTAAACCCATCGAACTTGATATTAGGCTTCCTTGTTGATTTCTCAATTTTTCATATTATCTTCTCATTTAGTCTGATTCCATAATTTCTACCTTGGTTCCTGATTTGGGGACTTCATCTAGAGACTTCGATGCAGATGTAATTTTCATGCTCTGAAATTTGTTCCAAAGATAGAAGAAACTGGAGCTTTACTTATACGGAGAATGCGTCAGAATGTTACACGCTTG</genome_strand>
        <mrna_strand>AGTCATTAGATCTAGAGGCCATTGGCAGTTTG.................................................................................GTGACAGATGCAGATGTTGTAAAAGAAGCAAAGCCAGGTTTCTACAAGAAATATATTCTTCCTATTTTACATAAAAACGGAGTTGTTCATTTTCTTGGATTTGGGAATCGATTGGCATCTGACCCGTTACCACCTCAGGTGCAGGTAAACCCATCGAACTTGATATTAGGCTTCCTTGTTGATTTCTCAATTTTTCATATTATCTTCTCATTTAGTCTGATTCCATAATTTCTACCTTGGTTCCTGATTTGGGGACTTCATCTAGAGACTTCGATGCAGATGTAATTTTCATGCTCTGAAATTTGTTCCAAAGATAGAAGAAACTGGAGCTTTACTTATACGGAGAATGCGTCAGAATGTTACACGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325276" ref_strand="+" ref_description="SGN-E325276 [cTOC-1-B5]">
      <seq>gctaaagctgctcattccttagctgagggacagaaaaaatccgagccaaaagatttgtgggctgaaccgtattttgttgcttcctcttggaaaccttgtgctgagcagcgtcaatggctacctagtgagggaaaaaatggttacattattgtcactgcaaatggtgggataaatcagcagcgagtagctgtctgcaatattgttgctattgcaagattactcgatgcaaccttggttcttccgaaatttctgtacagtagtgtttggaaagatgtgagccagtttggcgagatctaccaggaggagcatttcattgactacctgaaacctgatattcgtatagttagagaacttcctcaggagttgcagtcattagatctagaggccattggcagtttggtgacagatgcagatgttgtaaaagaagcaaagccaggtttctacaagaaatatattcttcctattttacataaaaacggagttgttcattttcttggatttgggaatcgattggcatctgacccgttaccacctcaggtgcagagacttcgatgcagatgtaattttcatgctctgaaatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="139010" stop="136563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138710" g_stop="138684" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138683" i_stop="138604" i_length="80">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138603" g_stop="138504" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="127" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138503" i_stop="138419" i_length="85">
            <donor d_prob="0.463" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138418" g_stop="138357" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="189" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138356" i_stop="138212" i_length="145">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="138211" g_stop="138123" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="278" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="138122" i_stop="137371" i_length="752">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="137370" g_stop="137250" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="399" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="137249" i_stop="137169" i_length="81">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="137168" g_stop="137025" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="543" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="137024" i_stop="136904" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="136903" g_stop="136863" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="584" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E325276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138710" e_stop="138684"/>
          <exon e_start="138603" e_stop="138504"/>
          <exon e_start="138418" e_stop="138357"/>
          <exon e_start="138211" e_stop="138123"/>
          <exon e_start="137370" e_stop="137250"/>
          <exon e_start="137168" e_stop="137025"/>
          <exon e_start="136903" e_stop="136863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAAGCTGCTCATTCCTTAGCTGAGGTACTTTTTGTTTCTACAAGGAAGTGAGTAGATCTATTTAGTTGGTTTTACTTTGATAATGTGAGGTCGACACATTGCAGGGACAGAAAAAATCCGAGCCAAAAGATTTGTGGGCTGAACCGTATTTTGTTGCTTCCTCTTGGAAACCTTGTGCTGAGCAGCGTCAATGGCTACCTAGTGGTCTCTCTCTCTCTCCCTCTTCCTCTCTTCATGCATGTTACGTTTCAGGTAGTTAACCTGCTTCTTATGTGGCTAAAATTTTCAGAGGGAAAAAATGGTTACATTATTGTCACTGCAAATGGTGGGATAAATCAGCAGCGAGTAGCTGTAAGTTATGTCTTCTGCTGTGACATTATTTGTTCCATATTTCTTTAGTTTAGCTTGCCAAGCTAAGGACAAAGGTTCCGTGCTACTATTATATGAAAGCTATGGTCTTTTTTCTTAACTAACACATTTTTTCCTTGCACAACAGGTCTGCAATATTGTTGCTATTGCAAGATTACTCGATGCAACCTTGGTTCTTCCGAAATTTCTGTACAGTAGTGTTTGGAAAGATGTGAGGTAAAAACTTACTACTTACTGTCAATTTCACTTCTTTCTTTCCTTTTTCCTGTTGTACAATAGGGATTGCAAAATAATATAGCAAAACTGTCATAATAGTGGGATCTTTGATTACAGATTCACAACATCTTTGATATACTATTTTGTAACTTCACTTGCGAATTCTTGTTGTTGACTGGAAACACGTACTAGTTGAATAGTATTTCATTTAATTCTTTTCCATGTTCTTTCCATAACTAATTAAACAACTAAACTGTCTTAGTCTTGAAATTCTTTAACTCAATAATTGGGAATTTGTGATGTAACACTGATTTCTCTTTGGTCGCTTGTCTACACAACATTAGCTCTCCAATACTTTGTGATTAAACCAAAGGTTCGCCTGGCTTTTCTTTGTTGAATCTACTTTAGAGATGCAAGTATGTGATAGTTCTTTTCCTGAACTCTTCCCCAATGTGCTTTGAGCTATATAAGTATCTCCATATGCGTTTTTAACTGCTGTTGAACCTCCCTTGCATTTGCAACTAGCTATGCCCCGTCCAAAAAAAATTATATGTTATCTTGGAAGTGTTTGCATCAGTAACTTTTAGTATGATCTTCATCAAATAGAAATTAGAACTTTAAATAAGATATTTATGTGCCTTCCCGATTTTGCTTCCTTCGAACTTGTTTCCTTTTCTTGCTAATCTAAAACATTTGATACCTTATGAGTTCCTTATATTGAAGATTGATAGATGTAACTTATAATTTCTTAGCCAGTTTGGCGAGATCTACCAGGAGGAGCATTTCATTGACTACCTGAAACCTGATATTCGTATAGTTAGAGAACTTCCTCAGGAGTTGCAGTCATTAGATCTAGAGGCCATTGGCAGTTTGGTAAGACTCTCATCTAGATAAATCATTTTGAATATGATCATGTGAAGAAACTAGTTTCTGACAATCTTGAAATAAATCCAGGTGACAGATGCAGATGTTGTAAAAGAAGCAAAGCCAGGTTTCTACAAGAAATATATTCTTCCTATTTTACATAAAAACGGAGTTGTTCATTTTCTTGGATTTGGGAATCGATTGGCATCTGACCCGTTACCACCTCAGGTGCAGGTAAACCCATCGAACTTGATATTAGGCTTCCTTGTTGATTTCTCAATTTTTCATATTATCTTCTCATTTAGTCTGATTCCATAATTTCTACCTTGGTTCCTGATTTGGGGACTTCATCTAGAGACTTCGATGCAGATGTAATTTTCATGCTCTGAAATTTGT</genome_strand>
        <mrna_strand>GCTAAAGCTGCTCATTCCTTAGCTGAG................................................................................GGACAGAAAAAATCCGAGCCAAAAGATTTGTGGGCTGAACCGTATTTTGTTGCTTCCTCTTGGAAACCTTGTGCTGAGCAGCGTCAATGGCTACCTAGTG.....................................................................................AGGGAAAAAATGGTTACATTATTGTCACTGCAAATGGTGGGATAAATCAGCAGCGAGTAGCT.................................................................................................................................................GTCTGCAATATTGTTGCTATTGCAAGATTACTCGATGCAACCTTGGTTCTTCCGAAATTTCTGTACAGTAGTGTTTGGAAAGATGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTTGGCGAGATCTACCAGGAGGAGCATTTCATTGACTACCTGAAACCTGATATTCGTATAGTTAGAGAACTTCCTCAGGAGTTGCAGTCATTAGATCTAGAGGCCATTGGCAGTTTG.................................................................................GTGACAGATGCAGATGTTGTAAAAGAAGCAAAGCCAGGTTTCTACAAGAAATATATTCTTCCTATTTTACATAAAAACGGAGTTGTTCATTTTCTTGGATTTGGGAATCGATTGGCATCTGACCCGTTACCACCTCAGGTGCAG.........................................................................................................................AGACTTCGATGCAGATGTAATTTTCATGCTCTGAAATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434041" ref_strand="+" ref_description="SGN-E434041 [STM-59-I16]">
      <seq>gtacaatagggattgcaaaatattatgcaaaaccgtctaaatagtggaatcttcgattacagattcacaacatcttcgatataccattttgtaccttcacttgcgaattcttgttgttgacttgaaacacgtactagttgaattgtatttcatttaattcttttccattttcttttcataactaattaaacatgtgaactgtcttcatcttgaaattcttttaactcaataattggaaatttgtgatgtaacactgatttctttttgatcgcttgtctacaaaacatgagctctccaatactttgtgattgtcccaaaggttcgcctggcttttctttgttgtatctactttagagatgcaagtatgctagagttcttttcctaaactgttccccaatgtgctttgagctatataagtatctccatatgcgtttttaactgctgtttaaccaccctttcatttacaactagctatgccctgtccgaaaaaaattatatgaagtgttgcatcagtaacttttagtatgatcttcatcaaatagaaattagaacttttaaataagatatttatgtgcctttcccattttgcttccttcaaacttgtttccttgttaatgtgaaacatttgataccttattagttccttatattgaagattgatagatgtaaactataatttcttagccagtttggcgatatctaccaggaggagcatttcattgactacctgaaacctgatattcgtgtagttagagaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="138368" stop="136994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138068" g_stop="137294" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E434041" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138068" e_stop="137294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAATAGGGATTGCAAAATAATATAGCAAAACTGTCATAATAGTGGGATCTTTGATTACAGATTCACAACATCTTTGATATACTATTTTGTAACTTCACTTGCGAATTCTTGTTGTTGACTGGAAACACGTACTAGTTGAATAGTATTTCATTTAATTCTTTTCCATGTTCTTTCCATAACTAATTAAACAACTAAACTGTCTTAGTCTTGAAATTC-TTTAACTCAATAATTGGGAATTTGTGATGTAACACTGATTTCTCTTTGGTCGCTTGTCTACACAACATTAGCTCTCCAATACTTTGTGATTAAACCAAAGGTTCGCCTGGCTTTTCTTTGTTGAATCTACTTTAGAGATGCAAGTATGTGATAGTTCTTTTCCTGAACTCTTCCCCAATGTGCTTTGAGCTATATAAGTATCTCCATATGCGTTTTTAACTGCTGTTGAACCTCCCTTGCATTTGCAACTAGCTATGCCCCGTCCAAAAAAAATTATATGTTATCTTGGAAGTGTTTGCATCAGTAACTTTTAGTATGATCTTCATCAAATAGAAATTAGAAC-TTTAAATAAGATATTTATGTGCCTTCCCGATTTTGCTTCCTTCGAACTTGTTTCCTTTTCTTGCTAATCTAAAACATTTGATACCTTATGAGTTCCTTATATTGAAGATTGATAGATGTAACTTATAATTTCTTAGCCAGTTTGGCGAGATCTACCAGGAGGAGCATTTCATTGACTACCTGAAACCTGATATTCGTATAGTTAGAGAACTTC</genome_strand>
        <mrna_strand>GTACAATAGGGATTGCAAAATATTAT-GCAAAACCGTCTAAATAGTGGAATCTTCGATTACAGATTCACAACATCTTCGATATACCATTTTGTACCTTCACTTGCGAATTCTTGTTGTTGACTTGAAACACGTACTAGTTGAATTGTATTTCATTTAATTCTTTTCCATTTTCTTTTCATAACTAATTAAACATGTGAACTGTCTTCATCTTGAAATTCTTTTAACTCAATAATTGGAAATTTGTGATGTAACACTGATTTCTTTTTGATCGCTTGTCTACAAAACATGAGCTCTCCAATACTTTGTGATTGTCCCAAAGGTTCGCCTGGCTTTTCTTTGTTGTATCTACTTTAGAGATGCAAGTATGCTAGAGTTCTTTTCCTAAACTGTTCCCCAATGTGCTTTGAGCTATATAAGTATCTCCATATGCGTTTTTAACTGCTGTTTAACCACCCTTTCATTTACAACTAGCTATGCCCTGTCCGAAAAAAA-T-TA---TA---T-GAAGTG-TTGCATCAGTAACTTTTAGTATGATCTTCATCAAATAGAAATTAGAACTTTTAAATAAGATATTTATGTGCCTTTCCCATTTTGCTTCCTTCAAACTTGTTT-C----CTTGTTAATGTGAAACATTTGATACCTTATTAGTTCCTTATATTGAAGATTGATAGATGTAAACTATAATTTCTTAGCCAGTTTGGCGATATCTACCAGGAGGAGCATTTCATTGACTACCTGAAACCTGATATTCGTGTAGTTAGAGAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404492" ref_strand="+" ref_description="SGN-E404492 [PPC-14-O7]">
      <seq>gtacaatagggattgcaaaatattatgcaaaaccgtctaaatagtggaatcttcgattacagattcacaacatcttcgatataccattttgtaccttcacttgcgaattcttgttgttgacttgaaacacgtactagttgaattgtatttcatttaattcttttccattttcttttcataactaattaaacatgtgaactgtcttcatcttgaaattcttttaactcaataattggaaatttgtgatgtaacactgatttctttttgatcgcttgtctacaaaacatgagctctccaatactttgtgattgtcccaaaggttcgcctggcttttctttgttgtatctactttagagatgcaagtatgctagagttcttttcctaaactgttccccaatgtgctttgagctatataagtatctccatatgcgtttttaactgctgtttaaccaccctttcatttacaactagctatgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="138368" stop="137290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138068" g_stop="137589" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E404492" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138068" e_stop="137589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAATAGGGATTGCAAAATAATATAGCAAAACTGTCATAATAGTGGGATCTTTGATTACAGATTCACAACATCTTTGATATACTATTTTGTAACTTCACTTGCGAATTCTTGTTGTTGACTGGAAACACGTACTAGTTGAATAGTATTTCATTTAATTCTTTTCCATGTTCTTTCCATAACTAATTAAACAACTAAACTGTCTTAGTCTTGAAATTC-TTTAACTCAATAATTGGGAATTTGTGATGTAACACTGATTTCTCTTTGGTCGCTTGTCTACACAACATTAGCTCTCCAATACTTTGTGATTAAACCAAAGGTTCGCCTGGCTTTTCTTTGTTGAATCTACTTTAGAGATGCAAGTATGTGATAGTTCTTTTCCTGAACTCTTCCCCAATGTGCTTTGAGCTATATAAGTATCTCCATATGCGTTTTTAACTGCTGTTGAACCTCCCTTGCATTTGCAACTAGCTATGCCCC</genome_strand>
        <mrna_strand>GTACAATAGGGATTGCAAAATATTAT-GCAAAACCGTCTAAATAGTGGAATCTTCGATTACAGATTCACAACATCTTCGATATACCATTTTGTACCTTCACTTGCGAATTCTTGTTGTTGACTTGAAACACGTACTAGTTGAATTGTATTTCATTTAATTCTTTTCCATTTTCTTTTCATAACTAATTAAACATGTGAACTGTCTTCATCTTGAAATTCTTTTAACTCAATAATTGGAAATTTGTGATGTAACACTGATTTCTTTTTGATCGCTTGTCTACAAAACATGAGCTCTCCAATACTTTGTGATTGTCCCAAAGGTTCGCCTGGCTTTTCTTTGTTGTATCTACTTTAGAGATGCAAGTATGCTAGAGTTCTTTTCCTAAACTGTTCCCCAATGTGCTTTGAGCTATATAAGTATCTCCATATGCGTTTTTAACTGCTGTTTAACCACCCTTTCATTTACAACTAGCTATGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364559" ref_strand="+" ref_description="SGN-E364559 [cLPP-18-D10]">
      <seq>taatttctcagaatcatcgtacgaatacgatgatatggattgttccaccatcccgacttcggatcgggatgagcccctgaatccgggtcataggaacaactcgtttaacgggttattgggtttcacgttcgggtccaagaagatgaggaagaagaaacccttttgtcaggaaaaagcaattgtcgggttggctctattggtgatcggttttgtcgggatgaattggtggatgctttcccggatccagaactcgggtcgggtttctcaggttgagttcaggttcttggaagataattcctccactctatcaattcgggaagaactgctaatgcttgtgcttggcgaagggagaaagcctcagaaaacaatctacgcacgattgctggctaaagctgctcattccttagctgagggacagaaaaaatcagagccaaaagatttgtgggctgaaccgtattttgttgcatcctcttggaaaccttgtgctgagcagcgtcaatggctacctagtgagggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="139806" stop="138204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139506" g_stop="139191" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139190" i_stop="138780" i_length="411">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138779" g_stop="138684" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="412" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138683" i_stop="138604" i_length="80">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138603" g_stop="138504" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="512" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138503" i_stop="138419" i_length="85">
            <donor d_prob="0.463" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="138418" g_stop="138411" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="520" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E364559" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139506" e_stop="139191"/>
          <exon e_start="138779" e_stop="138684"/>
          <exon e_start="138603" e_stop="138504"/>
          <exon e_start="138418" e_stop="138411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCTCAGAATCATCGTACGAATACGATGATAAGGATTGTTCCACCGTCACGACTTCGGATCGGGATGAGCCCCTGAATCCGGGTCATAGGAACAACTCGTTTAACGGGTTATTGGGTTTCACGTTCGGGTCCAAGAAGATGAGGAAGAAGAAACCCTTTTGTCAGGAAAAAGCAATTGTCGGGTTGGCTCTATTGGTGATCGGTTTTGTCGGGATGAATTGGTGGATGCTTTCCCGGATCCAGAACTCGGGTCGGGCTTCTCAGGTTGAGTTCAGGTTCTTGGAAGATAATTCCTCCACTCTATCAATTCGGGTATGTTTGAATCACTCTTTTATGTTAATTCTTGAATACTTCCGCAAAAAAGTACAACTAATGTTGAAACTTAGTCGAAAGCTGGGTTATGGATATGAATTTTGTTAAAGATGGTACTTCAGATATTGTCAATCATCTCAATATTTAGCTGTGAAGTTGAAAAAATGAATCTTGAATGTTAAGCAACTAGATATATGTTACTTATTCGACAAACTGTAAACTTAACTTCTCTTTCTCTAAATTGTTTAGTATTGGAGTGAAATAGGGGCAACTATATGGATATAGAGGATTCATATGGCTGACCCGACTAATTTAGGAATGAGGCTTAGTTGATAGTTGAAGTATGAATTGATTCACTGAGTTGGAGGTCTTTTGATACATATGGAGTAAATGTTATTTTTGATATGGTAGGAAGAACTGCTAAGGCTTGGGCTTGGCGAAGAGAGAAAGCCTCAGAAAACAATCTACGCACGATTGCTGGCTAAAGCTGCTCATTCCTTAGCTGAGGTACTTTTTGTTTCTACAAGGAAGTGAGTAGATCTATTTAGTTGGTTTTACTTTGATAATGTGAGGTCGACACATTGCAGGGACAGAAAAAATCCGAGCCAAAAGATTTGTGGGCTGAACCGTATTTTGTTGCTTCCTCTTGGAAACCTTGTGCTGAGCAGCGTCAATGGCTACCTAGTGGTCTCTCTCTCTCTCCCTCTTCCTCTCTTCATGCATGTTACGTTTCAGGTAGTTAACCTGCTTCTTATGTGGCTAAAATTTTCAGAGGGAAAA</genome_strand>
        <mrna_strand>TAATTTCTCAGAATCATCGTACGAATACGATGATATGGATTGTTCCACCATCCCGACTTCGGATCGGGATGAGCCCCTGAATCCGGGTCATAGGAACAACTCGTTTAACGGGTTATTGGGTTTCACGTTCGGGTCCAAGAAGATGAGGAAGAAGAAACCCTTTTGTCAGGAAAAAGCAATTGTCGGGTTGGCTCTATTGGTGATCGGTTTTGTCGGGATGAATTGGTGGATGCTTTCCCGGATCCAGAACTCGGGTCGGGTTTCTCAGGTTGAGTTCAGGTTCTTGGAAGATAATTCCTCCACTCTATCAATTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACTGCTAATGCTTGTGCTTGGCGAAGGGAGAAAGCCTCAGAAAACAATCTACGCACGATTGCTGGCTAAAGCTGCTCATTCCTTAGCTGAG................................................................................GGACAGAAAAAATCAGAGCCAAAAGATTTGTGGGCTGAACCGTATTTTGTTGCATCCTCTTGGAAACCTTGTGCTGAGCAGCGTCAATGGCTACCTAGTG.....................................................................................AGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272898" ref_strand="+" ref_description="SGN-E272898 [cLEM-25-L1]">
      <seq>caaacctttaaaagaaaaaaaaattctatgacttctcggagcaattctttttctaatttctcagaatcatcgtaccgaataccgatgataaggattgttccaccgtcacgacttcggatcgggatgagcccctgaatccgggtcataggaacaactcgtttaacgggttattgggtttcacgttcgggtccaagaagatgaggaagaagaaacccttttgtcaggaaaaagcaattgtcgggttggctctattggtgatcggttttgtcgggatgaattggtggatgcctttcccggatccagaactcgggtcgggccttctcaggttgagttcaggttcttggaagaaaattcctccactctatcaattcgggaagaactgctaaaggcttgggccttggcgaagagagaaagcctcagaaaacaatctaccccacaatgctggctaaagctgctcattccttagctgagggacagaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="139859" stop="138380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139559" g_stop="139191" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139190" i_stop="138780" i_length="411">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138779" g_stop="138684" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="471" r_length="98" r_score="0.906"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138683" i_stop="138604" i_length="80">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138603" g_stop="138591" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="484" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E272898" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139559" e_stop="139191"/>
          <exon e_start="138779" e_stop="138684"/>
          <exon e_start="138603" e_stop="138591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCTTTAAAAGATAAAAAAATTCTATGACTTCTCGGAGCAATTCTTTTTCTAATTTCTCAGAATCATCGTAC-GAATAC-GATGATAAGGATTGTTCCACCGTCACGACTTCGGATCGGGATGAGCCCCTGAATCCGGGTCATAGGAACAACTCGTTTAACGGGTTATTGGGTTTCACGTTCGGGTCCAAGAAGATGAGGAAGAAGAAACCCTTTTGTCAGGAAAAAGCAATTGTCGGGTTGGCTCTATTGGTGATCGGTTTTGTCGGGATGAATTGGTGGATG-CTTTCCCGGATCCAGAACTCGGGTCGGG-CTTCTCAGGTTGAGTTCAGGTTCTTGGAAGATAATTCCTCCACTCTATCAATTCGGGTATGTTTGAATCACTCTTTTATGTTAATTCTTGAATACTTCCGCAAAAAAGTACAACTAATGTTGAAACTTAGTCGAAAGCTGGGTTATGGATATGAATTTTGTTAAAGATGGTACTTCAGATATTGTCAATCATCTCAATATTTAGCTGTGAAGTTGAAAAAATGAATCTTGAATGTTAAGCAACTAGATATATGTTACTTATTCGACAAACTGTAAACTTAACTTCTCTTTCTCTAAATTGTTTAGTATTGGAGTGAAATAGGGGCAACTATATGGATATAGAGGATTCATATGGCTGACCCGACTAATTTAGGAATGAGGCTTAGTTGATAGTTGAAGTATGAATTGATTCACTGAGTTGGAGGTCTTTTGATACATATGGAGTAAATGTTATTTTTGATATGGTAGGAAGAACTGCT-AAGGCTTGGG-CTTGGCGAAGAGAGAAAGCCTCAGAAAACAATCTACGCACGATTGCTGGCTAAAGCTGCTCATTCCTTAGCTGAGGTACTTTTTGTTTCTACAAGGAAGTGAGTAGATCTATTTAGTTGGTTTTACTTTGATAATGTGAGGTCGACACATTGCAGGGACAGAAAAAAT</genome_strand>
        <mrna_strand>CAAACCTTTAAAAGAAAAAAAAATTCTATGACTTCTCGGAGCAATTCTTTTTCTAATTTCTCAGAATCATCGTACCGAATACCGATGATAAGGATTGTTCCACCGTCACGACTTCGGATCGGGATGAGCCCCTGAATCCGGGTCATAGGAACAACTCGTTTAACGGGTTATTGGGTTTCACGTTCGGGTCCAAGAAGATGAGGAAGAAGAAACCCTTTTGTCAGGAAAAAGCAATTGTCGGGTTGGCTCTATTGGTGATCGGTTTTGTCGGGATGAATTGGTGGATGCCTTTCCCGGATCCAGAACTCGGGTCGGGCCTTCTCAGGTTGAGTTCAGGTTCTTGGAAGAAAATTCCTCCACTCTATCAATTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACTGCTAAAGGCTTGGGCCTTGGCGAAGAGAGAAAGCCTCAGAAAACAATCTACCCCACAATGCTGGCTAAAGCTGCTCATTCCTTAGCTGAG................................................................................GGACAGAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="144324" stop="145220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144624" g_stop="144946" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144624" e_stop="144946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATGTTTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGA-AAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTAGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="144324" stop="145220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144624" g_stop="144929" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144624" e_stop="144929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATGTTTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGA-AAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTAGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="144324" stop="145074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144624" g_stop="144774" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144624" e_stop="144774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATGTTTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGA-AAAATTGTATTTCACTGCAATTGTATAATTCACAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="+" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="144325" stop="145370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144625" g_stop="145070" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144625" e_stop="145070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATGTTTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGA-AAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTAGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAGACGA--GA-ATGGGAGAGTGGCGAGCGAGACTTCTGGGAGAGAGACGCCTGGCAAATTTTTGTCAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCAATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555262" ref_strand="+" ref_description="SGN-E555262 [cTSC-6-O5]">
      <seq>ccccaatgtctgaagttgtgcaagcactggttcggttaatgcaaagagcaagtgtggtcaaaaggcgatccagtgatgaatcagctttcacatacaagactccggatcatgagacggttgacatgccatagataaaacatacacgacgaagcagcctttgcaattttgtaagtaacttctgtgaaggtcaagagtaactgtggcagatgaaactgggaggtgtcaataccagggacattaaatatgtaattatttttcacatcttcgtcgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0175O20-FLeny/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0175O20.1" temp_strand="-" temp_description="C02HBa0175O20.1  AC226511.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0175O20 sequenced_by:kribb upload_account_name:korea">
        <position start="145959" stop="145077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145659" g_stop="145377" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0175O20.1" gen_strand="-" ref_id="SGN-E555262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0175O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145659" e_stop="145377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAATGTCTGAAGTTGTGCAAGCACTGGTTCGGTTAATGCAAAGAGCAAGTGTGGTCAAAAGGCGATCCAGTGATGAATCAGCTTTCACATACAAGACTCCGGATCATGAGACGGTTGACATGCCATAGATAAAACATACACGACGAAGCAGCCTTTGCAATTTTGTAAGTAACTTCTGTGAAGGTCAAGAGTAACTGTGGCAGATGAAACTGGGAGGTGTCAATACCAGGGACATTAAATATGTAATTATTTTTCACATCTTCGTCGTTTAAAAAAAAAA</genome_strand>
        <mrna_strand>CCCCAATGTCTGAAGTTGTGCAAGCACTGGTTCGGTTAATGCAAAGAGCAAGTGTGGTCAAAAGGCGATCCAGTGATGAATCAGCTTTCACATACAAGACTCCGGATCATGAGACGGTTGACATGCCATAGATAAAACATACACGACGAAGCAGCCTTTGCAATTTTGTAAGTAACTTCTGTGAAGGTCAAGAGTAACTGTGGCAGATGAAACTGGGAGGTGTCAATACCAGGGACATTAAATATGTAATTATTTTTCACATCTTCGTCGTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>297</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4592" PGL_stop="4128"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4592" e_stop="4128"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="4592" e_stop="4128" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4592" stop="4128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470509" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATATTGGAGGACATGAGCGACAACAATTTTCTTCCAGTTATTCCAGTTTATAGGCTTCTAATTGATAGATATCAAAAAGCTGGAAGACTTGAATCTGCCGTTGAGCTACTTAAAGAGATTTCATCTTCTTCGCCATTTCCACATCTTGATAAGAGAATGTACTCTTCTTTGATTGAGTGTCTTTCTGTTTCAAACAAAATTGATCTGGCATTTGAGTTATATGTGGACATGATGAACAAAGGTGCAGTTCCAGAGCTGACGGACTTTGTTAACCTCATCAAGGGCTTAATAAGTATGAATAAATGGGAGAATGCACTTGAACTCTCTGAGAGCTTGTATTACATGCTACATGCATCGAAGTCCACCACCATTCAGCTCCTTTAGAGGTCAAGAAATGATAACATTGAGACCATCAAATCCTGAGGCACTACCTGCTGGCACCTCATATACATTCTTGGAGCTG</gDNA_template>
            <first_frame> V  Y  W  R  T  *  A  T  T  I  F  F  Q  L  F  Q  F  I  G  F  *  L  I  D  I  K  K  L  E  D  L  N  L  P  L  S  Y  L  K  R  F  H  L  L  R  H  F  H  I  L  I  R  E  C  T  L  L  *  L  S  V  F  L  F  Q  T  K  L  I  W  H  L  S  Y  M  W  T  *  *  T  K  V  Q  F  Q  S  *  R  T  L  L  T  S  S  R  A  *  *  V  *  I  N  G  R  M  H  L  N  S  L  R  A  C  I  T  C  Y  M  H  R  S  P  P  P  F  S  S  F  R  G  Q  E  M  I  T  L  R  P  S  N  P  E  A  L  P  A  G  T  S  Y  T  F  L  E  L </first_frame>
            <second_frame>  Y  I  G  G  H  E  R  Q  Q  F  S  S  S  Y  S  S  L  *  A  S  N  *  *  I  S  K  S  W  K  T  *  I  C  R  *  A  T  *  R  D  F  I  F  F  A  I  S  T  S  *  *  E  N  V  L  F  F  D  *  V  S  F  C  F  K  Q  N  *  S  G  I  *  V  I  C  G  H  D  E  Q  R  C  S  S  R  A  D  G  L  C  *  P  H  Q  G  L  N  K  Y  E  *  M  G  E  C  T  *  T  L  *  E  L  V  L  H  A  T  C  I  E  V  H  H  H  S  A  P  L  E  V  K  K  *  *  H  *  D  H  Q  I  L  R  H  Y  L  L  A  P  H  I  H  S  W  S   </second_frame>
            <third_frame>   I  L  E  D  M  S  D  N  N  F  L  P  V  I  P  V  Y  R  L  L  I  D  R  Y  Q  K  A  G  R  L  E  S  A  V  E  L  L  K  E  I  S  S  S  S  P  F  P  H  L  D  K  R  M  Y  S  S  L  I  E  C  L  S  V  S  N  K  I  D  L  A  F  E  L  Y  V  D  M  M  N  K  G  A  V  P  E  L  T  D  F  V  N  L  I  K  G  L  I  S  M  N  K  W  E  N  A  L  E  L  S  E  S  L  Y  Y  M  L  H  A  S  K  S  T  T  I  Q  L  L  *  R  S  R  N  D  N  I  E  T  I  K  S  *  G  T  T  C  W  H  L  I  Y  I  L  G  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4590" stop="4207"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILEDMSDNNFLPVIPVYRLLIDRYQKAGRLESAVELLKEISSSSPFPHLDKRMYSSLIECLSVSNKIDLAFELYVDMMNKGAVPELTDFVNLIKGLISMNKWENALELSESLYYMLHASKSTTIQLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9378" PGL_stop="8680"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9378" e_stop="8984"/>
            <exon e_start="8894" e_stop="8680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.932"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="9378" e_stop="8984" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="8983" i_stop="8895" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="8894" e_stop="8680" e_length="215"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9378" stop="8984"/>
              <exon start="8894" stop="8680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623832" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGCAATGTCAGAGAGCTTTTTTGCTGGAGCAGAAGCTAATGTTCAAGCTATTGCCAATGTACTGCAGACCACATCAACATATTCAGATAGCCAAAATCATACAAGTGGACACCGAATTGTTGTGCCTGTTGCAAACACACAACTAGAGGAGAGAAATGTTGATAGCCTATGTGGTTCTCCAATCGTATTCTCTAGTACTTTAAGATCCTTCTATAACAAAGAAGACAACGTGGAGTCCCGATCAACAGAAGAGTCTTGTAAAGAAACTGATCATGTCCAAGCTGGGATCAGAACATCAAAAGTTGAATGGGTGGAACAGTATCAACTCGGTGTCTTCATTACGTTGACAATACTGCCAAGTGGAAATAAGGGACTCAAGCGAGTCAGATTCAG : TAGGAAAAAGTTCACTGAGAAGGAAGCAAAGAAGTGGTGGGAAGAAAATCAGCTTTCTGTGTACAAAAAGTATGATGTTGAAGGATATGAAAATGTGAACCAAGTTTTGCTGAAGAAGTAGTCTCCACTTCCCTTTTTCTTCACAATGTAAATTGAATATGATTACAGTAGTGATTAATTTCAGGTTACAGAAAGGATTATTTAAGGAACTTAAC</gDNA_template>
            <first_frame> Q  A  M  S  E  S  F  F  A  G  A  E  A  N  V  Q  A  I  A  N  V  L  Q  T  T  S  T  Y  S  D  S  Q  N  H  T  S  G  H  R  I  V  V  P  V  A  N  T  Q  L  E  E  R  N  V  D  S  L  C  G  S  P  I  V  F  S  S  T  L  R  S  F  Y  N  K  E  D  N  V  E  S  R  S  T  E  E  S  C  K  E  T  D  H  V  Q  A  G  I  R  T  S  K  V  E  W  V  E  Q  Y  Q  L  G  V  F  I  T  L  T  I  L  P  S  G  N  K  G  L  K  R  V  R  F  S :   R  K  K  F  T  E  K  E  A  K  K  W  W  E  E  N  Q  L  S  V  Y  K  K  Y  D  V  E  G  Y  E  N  V  N  Q  V  L  L  K  K  *  S  P  L  P  F  F  F  T  M  *  I  E  Y  D  Y  S  S  D  *  F  Q  V  T  E  R  I  I  *  G  T  *  </first_frame>
            <second_frame>  R  Q  C  Q  R  A  F  L  L  E  Q  K  L  M  F  K  L  L  P  M  Y  C  R  P  H  Q  H  I  Q  I  A  K  I  I  Q  V  D  T  E  L  L  C  L  L  Q  T  H  N  *  R  R  E  M  L  I  A  Y  V  V  L  Q  S  Y  S  L  V  L  *  D  P  S  I  T  K  K  T  T  W  S  P  D  Q  Q  K  S  L  V  K  K  L  I  M  S  K  L  G  S  E  H  Q  K  L  N  G  W  N  S  I  N  S  V  S  S  L  R  *  Q  Y  C  Q  V  E  I  R  D  S  S  E  S  D  S   : V  G  K  S  S  L  R  R  K  Q  R  S  G  G  K  K  I  S  F  L  C  T  K  S  M  M  L  K  D  M  K  M  *  T  K  F  C  *  R  S  S  L  H  F  P  F  S  S  Q  C  K  L  N  M  I  T  V  V  I  N  F  R  L  Q  K  G  L  F  K  E  L  N </second_frame>
            <third_frame>   G  N  V  R  E  L  F  C  W  S  R  S  *  C  S  S  Y  C  Q  C  T  A  D  H  I  N  I  F  R  *  P  K  S  Y  K  W  T  P  N  C  C  A  C  C  K  H  T  T  R  G  E  K  C  *  *  P  M  W  F  S  N  R  I  L  *  Y  F  K  I  L  L  *  Q  R  R  Q  R  G  V  P  I  N  R  R  V  L  *  R  N  *  S  C  P  S  W  D  Q  N  I  K  S  *  M  G  G  T  V  S  T  R  C  L  H  Y  V  D  N  T  A  K  W  K  *  G  T  Q  A  S  Q  I  Q  :  *  E  K  V  H  *  E  G  S  K  E  V  V  G  R  K  S  A  F  C  V  Q  K  V  *  C  *  R  I  *  K  C  E  P  S  F  A  E  E  V  V  S  T  S  L  F  L  H  N  V  N  *  I  *  L  Q  *  *  L  I  S  G  Y  R  K  D  Y  L  R  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9378" stop="8984"/>
                    <exon start="8894" stop="8774"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAMSESFFAGAEANVQAIANVLQTTSTYSDSQNHTSGHRIVVPVANTQLEERNVDSLCGSPIVFSSTLRSFYNKEDNVESRSTEESCKETDHVQAGIRTSKVEWVEQYQLGVFITLTILPSGNKGLKRVRFSRKKFTEKEAKKWWEENQLSVYKKYDVEGYENVNQVLLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="11285" PGL_stop="10580"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11285" e_stop="10580"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="11285" e_stop="10580" e_length="706"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11285" stop="10580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559773" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCATCCTGGTGAGGAGACAAAGCTCTTACCGACCTGTGTGGCAAAACTTGTTGATCATGATTTCATTCAAGTATCCTGTGCAAGCACGCTAACCGCTGCACTATCTAGCACAGGAAAAGTTTATATGATGGGAAGTGCAGTGCATGGGCAACTAGGCAATCCAGAAGCCAAAGATAAATCATTAGTGCTTGTGCAAGGAAAACTTAGGGAGGAGTTCATTACAGAGATATCCTCGGGATCATATCATGTTGCTGTGCTAACATCAAGGGGAAGTGTTTACACATGGGGGAAAGGAGAAAATGGACAGTTAGGATTAGGTGATACAAAAGATAGAAGTTGGCCAACTTTAGTTGAATCACTGAGAGACAGGCAGGTGGAACATATTGCTTGTGGGTCAAGTACTACAGCAGCAATATGTTTGCACAAATCTGCATCTAGTACTGATCAATCATCTTGCAAAGGATGTAACATGTCTTTTGGAATTACGAGGAAGAAGCAAAACTGTTACAATTGCGGCCTTCTCTTCTGCCGCACGTGCTGCAGCAAGAAAACCCCAAATGCCTCTCTAGCCCCTGACAAGACTAAAGCTTTTCGGGTATGTGATCCATGTTTTTATCAACTTCAGAGGATTGCTCAGTCAAGCAGGTCATCCAAGCTTGAAAACCGTAGTCCAAGACCCTTACCGATTACCATAAAAGCAGTTA</gDNA_template>
            <first_frame> G  H  P  G  E  E  T  K  L  L  P  T  C  V  A  K  L  V  D  H  D  F  I  Q  V  S  C  A  S  T  L  T  A  A  L  S  S  T  G  K  V  Y  M  M  G  S  A  V  H  G  Q  L  G  N  P  E  A  K  D  K  S  L  V  L  V  Q  G  K  L  R  E  E  F  I  T  E  I  S  S  G  S  Y  H  V  A  V  L  T  S  R  G  S  V  Y  T  W  G  K  G  E  N  G  Q  L  G  L  G  D  T  K  D  R  S  W  P  T  L  V  E  S  L  R  D  R  Q  V  E  H  I  A  C  G  S  S  T  T  A  A  I  C  L  H  K  S  A  S  S  T  D  Q  S  S  C  K  G  C  N  M  S  F  G  I  T  R  K  K  Q  N  C  Y  N  C  G  L  L  F  C  R  T  C  C  S  K  K  T  P  N  A  S  L  A  P  D  K  T  K  A  F  R  V  C  D  P  C  F  Y  Q  L  Q  R  I  A  Q  S  S  R  S  S  K  L  E  N  R  S  P  R  P  L  P  I  T  I  K  A  V  </first_frame>
            <second_frame>  V  I  L  V  R  R  Q  S  S  Y  R  P  V  W  Q  N  L  L  I  M  I  S  F  K  Y  P  V  Q  A  R  *  P  L  H  Y  L  A  Q  E  K  F  I  *  W  E  V  Q  C  M  G  N  *  A  I  Q  K  P  K  I  N  H  *  C  L  C  K  E  N  L  G  R  S  S  L  Q  R  Y  P  R  D  H  I  M  L  L  C  *  H  Q  G  E  V  F  T  H  G  G  K  E  K  M  D  S  *  D  *  V  I  Q  K  I  E  V  G  Q  L  *  L  N  H  *  E  T  G  R  W  N  I  L  L  V  G  Q  V  L  Q  Q  Q  Y  V  C  T  N  L  H  L  V  L  I  N  H  L  A  K  D  V  T  C  L  L  E  L  R  G  R  S  K  T  V  T  I  A  A  F  S  S  A  A  R  A  A  A  R  K  P  Q  M  P  L  *  P  L  T  R  L  K  L  F  G  Y  V  I  H  V  F  I  N  F  R  G  L  L  S  Q  A  G  H  P  S  L  K  T  V  V  Q  D  P  Y  R  L  P  *  K  Q  L </second_frame>
            <third_frame>   S  S  W  *  G  D  K  A  L  T  D  L  C  G  K  T  C  *  S  *  F  H  S  S  I  L  C  K  H  A  N  R  C  T  I  *  H  R  K  S  L  Y  D  G  K  C  S  A  W  A  T  R  Q  S  R  S  Q  R  *  I  I  S  A  C  A  R  K  T  *  G  G  V  H  Y  R  D  I  L  G  I  I  S  C  C  C  A  N  I  K  G  K  C  L  H  M  G  E  R  R  K  W  T  V  R  I  R  *  Y  K  R  *  K  L  A  N  F  S  *  I  T  E  R  Q  A  G  G  T  Y  C  L  W  V  K  Y  Y  S  S  N  M  F  A  Q  I  C  I  *  Y  *  S  I  I  L  Q  R  M  *  H  V  F  W  N  Y  E  E  E  A  K  L  L  Q  L  R  P  S  L  L  P  H  V  L  Q  Q  E  N  P  K  C  L  S  S  P  *  Q  D  *  S  F  S  G  M  *  S  M  F  L  S  T  S  E  D  C  S  V  K  Q  V  I  Q  A  *  K  P  *  S  K  T  L  T  D  Y  H  K  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11285" stop="10581"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GHPGEETKLLPTCVAKLVDHDFIQVSCASTLTAALSSTGKVYMMGSAVHGQLGNPEAKDKSLVLVQGKLREEFITEISSGSYHVAVLTSRGSVYTWGKGENGQLGLGDTKDRSWPTLVESLRDRQVEHIACGSSTTAAICLHKSASSTDQSSCKGCNMSFGITRKKQNCYNCGLLFCRTCCSKKTPNASLAPDKTKAFRVCDPCFYQLQRIAQSSRSSKLENRSPRPLPITIKAV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26225" PGL_stop="26623"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26225" e_stop="26623"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26225" e_stop="26623" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26225" stop="26623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACATTCTGTTCTTGAAATTTTTTTGAAGATCTCTGTTTTCCTGTTCTTGAAAAATCTTCATACAAAGTTGTTTCTTTTTCAATTTCCAACAACCCAAATCAAAGATTGCTAATCTGCTTTCAAAGTTTATTCCTTTTCTCTTTTTATGGGAATTCCCTTTCAAGAATAGCAGCAAAGACACTCCATTCATCTTCAATTGGATCCAATATTCCATTTATTGAAACTCTGCTGCCAAAGCTCTGTTTTCTTTTTCTTTTCGTGTGATTTAACAGTCAGAATCAGAGAAATAATGTGGGGCGCCGTTCAATTGGGAGTATTGGCGGCCTTTCTTGTACTCTTTGTCCCTGTCGGTATGGCTGGTTGGCACTTGAGTCGCAACAAAATGTTATTTTTCAGCT</gDNA_template>
            <first_frame> D  I  L  F  L  K  F  F  *  R  S  L  F  S  C  S  *  K  I  F  I  Q  S  C  F  F  F  N  F  Q  Q  P  K  S  K  I  A  N  L  L  S  K  F  I  P  F  L  F  L  W  E  F  P  F  K  N  S  S  K  D  T  P  F  I  F  N  W  I  Q  Y  S  I  Y  *  N  S  A  A  K  A  L  F  S  F  S  F  R  V  I  *  Q  S  E  S  E  K  *  C  G  A  P  F  N  W  E  Y  W  R  P  F  L  Y  S  L  S  L  S  V  W  L  V  G  T  *  V  A  T  K  C  Y  F  S  A </first_frame>
            <second_frame>  T  F  C  S  *  N  F  F  E  D  L  C  F  P  V  L  E  K  S  S  Y  K  V  V  S  F  S  I  S  N  N  P  N  Q  R  L  L  I  C  F  Q  S  L  F  L  F  S  F  Y  G  N  S  L  S  R  I  A  A  K  T  L  H  S  S  S  I  G  S  N  I  P  F  I  E  T  L  L  P  K  L  C  F  L  F  L  F  V  *  F  N  S  Q  N  Q  R  N  N  V  G  R  R  S  I  G  S  I  G  G  L  S  C  T  L  C  P  C  R  Y  G  W  L  A  L  E  S  Q  Q  N  V  I  F  Q   </second_frame>
            <third_frame>   H  S  V  L  E  I  F  L  K  I  S  V  F  L  F  L  K  N  L  H  T  K  L  F  L  F  Q  F  P  T  T  Q  I  K  D  C  *  S  A  F  K  V  Y  S  F  S  L  F  M  G  I  P  F  Q  E  *  Q  Q  R  H  S  I  H  L  Q  L  D  P  I  F  H  L  L  K  L  C  C  Q  S  S  V  F  F  F  F  S  C  D  L  T  V  R  I  R  E  I  M  W  G  A  V  Q  L  G  V  L  A  A  F  L  V  L  F  V  P  V  G  M  A  G  W  H  L  S  R  N  K  M  L  F  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26241" stop="26489"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFEDLCFPVLEKSSYKVVSFSISNNPNQRLLICFQSLFLFSFYGNSLSRIAAKTLHSSSIGSNIPFIETLLPKLCFLFLFV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26395" stop="26622"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQRHSIHLQLDPIFHLLKLCCQSSVFFFFSCDLTVRIREIMWGAVQLGVLAAFLVLFVPVGMAGWHLSRNKMLFFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="34198" PGL_stop="31122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34198" e_stop="33490"/>
            <exon e_start="31878" e_stop="31122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.981" e_score="0.984"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="34198" e_stop="33490" e_length="709"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33489" i_stop="31879" i_length="1611"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="31878" e_stop="31122" e_length="757"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34198" stop="33490"/>
              <exon start="31878" stop="31816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33734" stop="33490"/>
              <exon start="31878" stop="31535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33555" stop="33490"/>
              <exon start="31878" stop="31209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31659" stop="31122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAGAAAAAGGGGCGCCGACAAGCCCAATTGGCAAAGTTCAAAAAAGCAGTGAAGAAACATGACCATCCATGGTAATATCTCTGCAAAAAGTGACAAACTTTCCCTTTTCTCATAATTCCCTGCATAGTGAAACAACTCATCAGATTCAAGAGTTTAAGCAAAGCAACAATTTTTCATCTCTTTGATAGTGAAGAAGAACATATACACTCCATTTTGTAAGTATGCTACTACTGTCACTTTTAGTAGCATTCGCACTCTTTTCTCCAACCCCATTTGTCCATTCTCACTACAACTGGTCACCTTCTTCTTCCTCCACCTCCAATTTTCAGTCCGAGTGGCGTCCTGCACGCGCCACCTATTACGCCGCCGCCGACCCACGTGACGTTGTGGGTGGCGCGTGCGGATATGGGGATTTGGAGAGAAATGGGTATGGAAAAGCTACAGCTGGGTTAAGTACTGTGCTTTTTGACAAGGGTCAGATCTGTGGTGCTTGTTATGAAGTGAGGTGTGTGGAGGATCTGCGGTGGTGCATTCCGGGTACTTCTATAATTGTTACAGCCACTAATTTTTGTGCACCAAATTATGGGTTTGATCTAGATGGTGGTGGTCACTGTAATCCACCTAATGCCCATTTTGTGCTACCCATTGAGGCTTTTGAGAAGATTGCCATTTGGAAAGCTTCTAATATGCCCATTCAATACCGCAG : GATAAAGTGCAGAAAGGAAGGTGGAGTTCGATTCACTCTTGGTGGCTCTGGTATATTCTTGTCAGTTCTAATCAGTAATGTTGCAGGTTCGGGTGATATAGTGGCAGCAAAAGTTAAGGGTTCAAGAACAGGCTGGCTTCCTATGGGTAGGAACTGGGGCCAAAACTGGCACATTAATGCTGACTTAAAGAATCAGCCGCTTTCTTTTGAGATGACTAGTGGTGATGGGGCCACCTTAACATCTTACAATGTAGCTCCCAAGAATTGGAATTTTGGTCAGACCTTTGAAGGCAAGCAGTTTGGGTCTTAGACTCATGCCAAAAGTGTATCTATTGCTCATCTTTTATTTTGGATTGCTCAACATTGGCTAGCAATGTTGGGACATTTTTGTTCGAGTTCATGTTGGACAAGTGACTACCTGATTAAGTCGTTGCAGAGCAAAGCTCTGCGATTGTGCGGTATGTTGTTGTTCACTCAATCCTTGTGAACTTGAACGGAACCAGAGAAGAAACTTGCCACTTGCAAGGCAATTTTATCAAGCAATTGTTTTGCCAGTCAAATGTTGCAGAACCTGAATCAAAGTTGTTAGAATTGTTGATTTGTAGATTAAGAATGTTCCTTTTCGAATCTGATGAAATTTATGAACTCATCCAAAGGAGACAAATATTTCCTTGTTATTGTAGATTTTTTTGTCAAACGATCAAAACATTATCCTTATCTTGTCACCTTTATTTATTAAATATTTGTTTCAGTGCCT</gDNA_template>
            <first_frame> R  E  K  K  G  R  R  Q  A  Q  L  A  K  F  K  K  A  V  K  K  H  D  H  P  W  *  Y  L  C  K  K  *  Q  T  F  P  F  L  I  I  P  C  I  V  K  Q  L  I  R  F  K  S  L  S  K  A  T  I  F  H  L  F  D  S  E  E  E  H  I  H  S  I  L  *  V  C  Y  Y  C  H  F  *  *  H  S  H  S  F  L  Q  P  H  L  S  I  L  T  T  T  G  H  L  L  L  P  P  P  P  I  F  S  P  S  G  V  L  H  A  P  P  I  T  P  P  P  T  H  V  T  L  W  V  A  R  A  D  M  G  I  W  R  E  M  G  M  E  K  L  Q  L  G  *  V  L  C  F  L  T  R  V  R  S  V  V  L  V  M  K  *  G  V  W  R  I  C  G  G  A  F  R  V  L  L  *  L  L  Q  P  L  I  F  V  H  Q  I  M  G  L  I  *  M  V  V  V  T  V  I  H  L  M  P  I  L  C  Y  P  L  R  L  L  R  R  L  P  F  G  K  L  L  I  C  P  F  N  T  A   : G  *  S  A  E  R  K  V  E  F  D  S  L  L  V  A  L  V  Y  S  C  Q  F  *  S  V  M  L  Q  V  R  V  I  *  W  Q  Q  K  L  R  V  Q  E  Q  A  G  F  L  W  V  G  T  G  A  K  T  G  T  L  M  L  T  *  R  I  S  R  F  L  L  R  *  L  V  V  M  G  P  P  *  H  L  T  M  *  L  P  R  I  G  I  L  V  R  P  L  K  A  S  S  L  G  L  R  L  M  P  K  V  Y  L  L  L  I  F  Y  F  G  L  L  N  I  G  *  Q  C  W  D  I  F  V  R  V  H  V  G  Q  V  T  T  *  L  S  R  C  R  A  K  L  C  D  C  A  V  C  C  C  S  L  N  P  C  E  L  E  R  N  Q  R  R  N  L  P  L  A  R  Q  F  Y  Q  A  I  V  L  P  V  K  C  C  R  T  *  I  K  V  V  R  I  V  D  L  *  I  K  N  V  P  F  R  I  *  *  N  L  *  T  H  P  K  E  T  N  I  S  L  L  L  *  I  F  L  S  N  D  Q  N  I  I  L  I  L  S  P  L  F  I  K  Y  L  F  Q  C   </first_frame>
            <second_frame>  E  R  K  R  G  A  D  K  P  N  W  Q  S  S  K  K  Q  *  R  N  M  T  I  H  G  N  I  S  A  K  S  D  K  L  S  L  F  S  *  F  P  A  *  *  N  N  S  S  D  S  R  V  *  A  K  Q  Q  F  F  I  S  L  I  V  K  K  N  I  Y  T  P  F  C  K  Y  A  T  T  V  T  F  S  S  I  R  T  L  F  S  N  P  I  C  P  F  S  L  Q  L  V  T  F  F  F  L  H  L  Q  F  S  V  R  V  A  S  C  T  R  H  L  L  R  R  R  R  P  T  *  R  C  G  W  R  V  R  I  W  G  F  G  E  K  W  V  W  K  S  Y  S  W  V  K  Y  C  A  F  *  Q  G  S  D  L  W  C  L  L  *  S  E  V  C  G  G  S  A  V  V  H  S  G  Y  F  Y  N  C  Y  S  H  *  F  L  C  T  K  L  W  V  *  S  R  W  W  W  S  L  *  S  T  *  C  P  F  C  A  T  H  *  G  F  *  E  D  C  H  L  E  S  F  *  Y  A  H  S  I  P  Q  :  D  K  V  Q  K  G  R  W  S  S  I  H  S  W  W  L  W  Y  I  L  V  S  S  N  Q  *  C  C  R  F  G  *  Y  S  G  S  K  S  *  G  F  K  N  R  L  A  S  Y  G  *  E  L  G  P  K  L  A  H  *  C  *  L  K  E  S  A  A  F  F  *  D  D  *  W  *  W  G  H  L  N  I  L  Q  C  S  S  Q  E  L  E  F  W  S  D  L  *  R  Q  A  V  W  V  L  D  S  C  Q  K  C  I  Y  C  S  S  F  I  L  D  C  S  T  L  A  S  N  V  G  T  F  L  F  E  F  M  L  D  K  *  L  P  D  *  V  V  A  E  Q  S  S  A  I  V  R  Y  V  V  V  H  S  I  L  V  N  L  N  G  T  R  E  E  T  C  H  L  Q  G  N  F  I  K  Q  L  F  C  Q  S  N  V  A  E  P  E  S  K  L  L  E  L  L  I  C  R  L  R  M  F  L  F  E  S  D  E  I  Y  E  L  I  Q  R  R  Q  I  F  P  C  Y  C  R  F  F  C  Q  T  I  K  T  L  S  L  S  C  H  L  Y  L  L  N  I  C  F  S  A  </second_frame>
            <third_frame>   R  E  K  G  A  P  T  S  P  I  G  K  V  Q  K  S  S  E  E  T  *  P  S  M  V  I  S  L  Q  K  V  T  N  F  P  F  S  H  N  S  L  H  S  E  T  T  H  Q  I  Q  E  F  K  Q  S  N  N  F  S  S  L  *  *  *  R  R  T  Y  T  L  H  F  V  S  M  L  L  L  S  L  L  V  A  F  A  L  F  S  P  T  P  F  V  H  S  H  Y  N  W  S  P  S  S  S  S  T  S  N  F  Q  S  E  W  R  P  A  R  A  T  Y  Y  A  A  A  D  P  R  D  V  V  G  G  A  C  G  Y  G  D  L  E  R  N  G  Y  G  K  A  T  A  G  L  S  T  V  L  F  D  K  G  Q  I  C  G  A  C  Y  E  V  R  C  V  E  D  L  R  W  C  I  P  G  T  S  I  I  V  T  A  T  N  F  C  A  P  N  Y  G  F  D  L  D  G  G  G  H  C  N  P  P  N  A  H  F  V  L  P  I  E  A  F  E  K  I  A  I  W  K  A  S  N  M  P  I  Q  Y  R  R :   I  K  C  R  K  E  G  G  V  R  F  T  L  G  G  S  G  I  F  L  S  V  L  I  S  N  V  A  G  S  G  D  I  V  A  A  K  V  K  G  S  R  T  G  W  L  P  M  G  R  N  W  G  Q  N  W  H  I  N  A  D  L  K  N  Q  P  L  S  F  E  M  T  S  G  D  G  A  T  L  T  S  Y  N  V  A  P  K  N  W  N  F  G  Q  T  F  E  G  K  Q  F  G  S  *  T  H  A  K  S  V  S  I  A  H  L  L  F  W  I  A  Q  H  W  L  A  M  L  G  H  F  C  S  S  S  C  W  T  S  D  Y  L  I  K  S  L  Q  S  K  A  L  R  L  C  G  M  L  L  F  T  Q  S  L  *  T  *  T  E  P  E  K  K  L  A  T  C  K  A  I  L  S  S  N  C  F  A  S  Q  M  L  Q  N  L  N  Q  S  C  *  N  C  *  F  V  D  *  E  C  S  F  S  N  L  M  K  F  M  N  S  S  K  G  D  K  Y  F  L  V  I  V  D  F  F  V  K  R  S  K  H  Y  P  Y  L  V  T  F  I  Y  *  I  F  V  S  V  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34004" stop="33490"/>
                    <exon start="31878" stop="31569"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRTYTLHFVSMLLLSLLVAFALFSPTPFVHSHYNWSPSSSSTSNFQSEWRPARATYYAAADPRDVVGGACGYGDLERNGYGKATAGLSTVLFDKGQICGACYEVRCVEDLRWCIPGTSIIVTATNFCAPNYGFDLDGGGHCNPPNAHFVLPIEAFEKIAIWKASNMPIQYRRIKCRKEGGVRFTLGGSGIFLSVLISNVAGSGDIVAAKVKGSRTGWLPMGRNWGQNWHINADLKNQPLSFEMTSGDGATLTSYNVAPKNWNFGQTFEGKQFGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31452" stop="31123"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVAEQSSAIVRYVVVHSILVNLNGTREETCHLQGNFIKQLFCQSNVAEPESKLLELLICRLRMFLFESDEIYELIQRRQIFPCYCRFFCQTIKTLSLSCHLYLLNICFSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="43216" PGL_stop="41518"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43216" e_stop="43013"/>
            <exon e_start="42901" e_stop="42675"/>
            <exon e_start="42458" e_stop="42125"/>
            <exon e_start="42042" e_stop="41518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43216" e_stop="43013" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.868">
            <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42901" e_stop="42675" e_length="227"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42674" i_stop="42459" i_length="216"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42458" e_stop="42125" e_length="334"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42124" i_stop="42043" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="42042" e_stop="41518" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43216" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42125"/>
              <exon start="42042" stop="41549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43200" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42125"/>
              <exon start="42042" stop="41930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43200" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42125"/>
              <exon start="42042" stop="42026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43195" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43194" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43194" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43187" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43187" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43183" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43183" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43178" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42125"/>
              <exon start="42042" stop="41522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43178" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43177" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43174" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43161" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43136" stop="43013"/>
              <exon start="42901" stop="42678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43076" stop="43013"/>
              <exon start="42901" stop="42675"/>
              <exon start="42458" stop="42240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42780" stop="42675"/>
              <exon start="42458" stop="42125"/>
              <exon start="42042" stop="41921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42369" stop="42125"/>
              <exon start="42042" stop="41831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42139" stop="42125"/>
              <exon start="42042" stop="41518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41944" stop="41519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41938" stop="41519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41882" stop="41519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41762" stop="41530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41762" stop="41531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCACTCACACCATAGAGAACAGATACCAAACACAAGCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG : CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAG : GAAAGTTATGAAAGATTTTGCACTGAAGCTAGAGAAACTAGCTGAAAATCTTTTGGATTTGCTATGTGAGAATCTTGGACTAGAGAAAGGTTATTTGAAAAAAGCATTTTATGGCTCAAAGGGTCCAACTTTTGGTACCAAAGTTAGCAACTATCCTCCTTGTCCCAAGCCAGACTTGATCAAAGGCCTTCGCGCTCACACGGATGCTGGTGGCATCATCCTTCTATTCCAAGATGACAAAGTCAGTGGTCTCCAATTGCTAAAAGATGGCAATTGGATTGATGTACCTCCTATGAAACACTCTATTGTCATCAACCTCGGCGATCAGCTAGAG : GTGATTACTAATGGAAGATACAAGAGTATTGAGCACAGAGTGATTGCTCAACAAGATGGCACTAGGATGTCAATAGCTTCCTTTTATAATCCAGGAAGTGATGCTGTCATATTTCCAGCACCAGAGTTGATTGAGAAGACAGAAGAGGACAACAAATTGAAGTATCCAAAATTTGTGTTTGAAGATTATATGAAGTTGTATGCAGGTCTCAAATTCCAGGCTAAGGAGCCTAGGTTTGAAGCAATGAAGGCTGTGGAGACTACTGTCAACTTAGGTCCAATAGAAACTGTTTGATAATCTTTTCAAGGGGGAATTTGTTTATGTTTTAATAGGACACTAATTAAGAGGATTAAAGAAGTTAAGGTTTCTAAAGCTGTGTTGTCCTTTTAGTTAATAATTTACTATGTTACTTGATGTGTCATTGTCTGTTGTTTGGTAGTGAGCTGTTTGAGGTTGTTCTCTATGGGGTATATTGTAAAGTTTCCTCTTTTACTTTAATGAAATCTATGCTTAAAGAAAACAAAC</gDNA_template>
            <first_frame> Y  H  S  H  H  R  E  Q  I  P  N  T  S  K  L  K  D  K  L  E  S  Q  L  S  K  K  R  K  K  N  R  K  M  E  S  N  F  P  V  V  D  M  G  L  L  Q  T  E  K  R  P  E  A  M  D  K  I  K  D  A  C  E  N  W  G  F  F  E  :  L  V  N  H  G  I  S  H  E  L  L  D  T  V  E  N  L  T  K  G  H  Y  K  K  C  M  E  Q  R  F  K  E  M  V  A  S  K  G  L  E  A  V  Q  T  E  I  D  D  L  D  W  E  S  T  F  F  L  K  H  L  P  V  S  N  V  Y  E  V  P  D  L  D  D  E  Y  R :   K  V  M  K  D  F  A  L  K  L  E  K  L  A  E  N  L  L  D  L  L  C  E  N  L  G  L  E  K  G  Y  L  K  K  A  F  Y  G  S  K  G  P  T  F  G  T  K  V  S  N  Y  P  P  C  P  K  P  D  L  I  K  G  L  R  A  H  T  D  A  G  G  I  I  L  L  F  Q  D  D  K  V  S  G  L  Q  L  L  K  D  G  N  W  I  D  V  P  P  M  K  H  S  I  V  I  N  L  G  D  Q  L  E  :  V  I  T  N  G  R  Y  K  S  I  E  H  R  V  I  A  Q  Q  D  G  T  R  M  S  I  A  S  F  Y  N  P  G  S  D  A  V  I  F  P  A  P  E  L  I  E  K  T  E  E  D  N  K  L  K  Y  P  K  F  V  F  E  D  Y  M  K  L  Y  A  G  L  K  F  Q  A  K  E  P  R  F  E  A  M  K  A  V  E  T  T  V  N  L  G  P  I  E  T  V  *  *  S  F  Q  G  G  I  C  L  C  F  N  R  T  L  I  K  R  I  K  E  V  K  V  S  K  A  V  L  S  F  *  L  I  I  Y  Y  V  T  *  C  V  I  V  C  C  L  V  V  S  C  L  R  L  F  S  M  G  Y  I  V  K  F  P  L  L  L  *  *  N  L  C  L  K  K  T  N </first_frame>
            <second_frame>  I  T  H  T  I  E  N  R  Y  Q  T  Q  A  N  *  K  I  N  *  R  V  S  L  V  R  K  E  K  K  T  E  K  W  R  V  I  S  Q  L  W  I  W  G  C  F  K  L  R  K  G  L  K  Q  W  T  K  S  K  M  H  V  K  T  G  V  S  L  S :   L  *  I  M  G  F  L  M  N  C  W  T  Q  W  R  I  *  L  R  D  I  T  K  S  A  W  N  K  G  L  K  K  W  W  Q  V  K  D  L  K  L  S  K  L  K  L  M  I  L  I  G  R  A  L  S  S  *  N  I  F  L  F  P  M  C  M  K  F  L  T  W  M  M  N  T   : G  K  L  *  K  I  L  H  *  S  *  R  N  *  L  K  I  F  W  I  C  Y  V  R  I  L  D  *  R  K  V  I  *  K  K  H  F  M  A  Q  R  V  Q  L  L  V  P  K  L  A  T  I  L  L  V  P  S  Q  T  *  S  K  A  F  A  L  T  R  M  L  V  A  S  S  F  Y  S  K  M  T  K  S  V  V  S  N  C  *  K  M  A  I  G  L  M  Y  L  L  *  N  T  L  L  S  S  T  S  A  I  S  *  R :   *  L  L  M  E  D  T  R  V  L  S  T  E  *  L  L  N  K  M  A  L  G  C  Q  *  L  P  F  I  I  Q  E  V  M  L  S  Y  F  Q  H  Q  S  *  L  R  R  Q  K  R  T  T  N  *  S  I  Q  N  L  C  L  K  I  I  *  S  C  M  Q  V  S  N  S  R  L  R  S  L  G  L  K  Q  *  R  L  W  R  L  L  S  T  *  V  Q  *  K  L  F  D  N  L  F  K  G  E  F  V  Y  V  L  I  G  H  *  L  R  G  L  K  K  L  R  F  L  K  L  C  C  P  F  S  *  *  F  T  M  L  L  D  V  S  L  S  V  V  W  *  *  A  V  *  G  C  S  L  W  G  I  L  *  S  F  L  F  Y  F  N  E  I  Y  A  *  R  K  Q   </second_frame>
            <third_frame>   S  L  T  P  *  R  T  D  T  K  H  K  Q  I  K  R  *  T  R  E  S  A  *  *  E  K  K  K  K  Q  K  N  G  E  *  F  P  S  C  G  Y  G  V  A  S  N  *  E  K  A  *  S  N  G  Q  N  Q  R  C  M  *  K  L  G  F  L  *   : A  C  E  S  W  D  F  S  *  I  A  G  H  S  G  E  F  N  *  G  T  L  Q  K  V  H  G  T  K  V  *  R  N  G  G  K  *  R  T  *  S  C  P  N  *  N  *  *  S  *  L  G  E  H  F  L  L  E  T  S  S  C  F  Q  C  V  *  S  S  *  P  G  *  *  I  Q  :  E  S  Y  E  R  F  C  T  E  A  R  E  T  S  *  K  S  F  G  F  A  M  *  E  S  W  T  R  E  R  L  F  E  K  S  I  L  W  L  K  G  S  N  F  W  Y  Q  S  *  Q  L  S  S  L  S  Q  A  R  L  D  Q  R  P  S  R  S  H  G  C  W  W  H  H  P  S  I  P  R  *  Q  S  Q  W  S  P  I  A  K  R  W  Q  L  D  *  C  T  S  Y  E  T  L  Y  C  H  Q  P  R  R  S  A  R   : G  D  Y  *  W  K  I  Q  E  Y  *  A  Q  S  D  C  S  T  R  W  H  *  D  V  N  S  F  L  L  *  S  R  K  *  C  C  H  I  S  S  T  R  V  D  *  E  D  R  R  G  Q  Q  I  E  V  S  K  I  C  V  *  R  L  Y  E  V  V  C  R  S  Q  I  P  G  *  G  A  *  V  *  S  N  E  G  C  G  D  Y  C  Q  L  R  S  N  R  N  C  L  I  I  F  S  R  G  N  L  F  M  F  *  *  D  T  N  *  E  D  *  R  S  *  G  F  *  S  C  V  V  L  L  V  N  N  L  L  C  Y  L  M  C  H  C  L  L  F  G  S  E  L  F  E  V  V  L  Y  G  V  Y  C  K  V  S  S  F  T  L  M  K  S  M  L  K  E  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43216" stop="43013"/>
                    <exon start="42901" stop="42675"/>
                    <exon start="42458" stop="42125"/>
                    <exon start="42042" stop="41749"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YHSHHREQIPNTSKLKDKLESQLSKKRKKNRKMESNFPVVDMGLLQTEKRPEAMDKIKDACENWGFFELVNHGISHELLDTVENLTKGHYKKCMEQRFKEMVASKGLEAVQTEIDDLDWESTFFLKHLPVSNVYEVPDLDDEYRKVMKDFALKLEKLAENLLDLLCENLGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGNWIDVPPMKHSIVINLGDQLEVITNGRYKSIEHRVIAQQDGTRMSIASFYNPGSDAVIFPAPELIEKTEEDNKLKYPKFVFEDYMKLYAGLKFQAKEPRFEAMKAVETTVNLGPIETV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43179" e_stop="43013"/>
            <exon e_start="42901" e_stop="42434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.868" e_score="1.000"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43179" e_stop="43013" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.868">
            <gDNA_intron_boundary i_start="43012" i_stop="42902" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="42901" e_stop="42434" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43179" stop="43013"/>
              <exon start="42901" stop="42467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43136" stop="43013"/>
              <exon start="42901" stop="42434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43136" stop="43013"/>
              <exon start="42901" stop="42678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAATTAAAAGATAAACTAGAGAGTCAGCTTAGTAAGAAAAGAAAAAAAAACAGAAAAATGGAGAGTAATTTCCCAGTTGTGGATATGGGGTTGCTTCAAACTGAGAAAAGGCCTGAAGCAATGGACAAAATCAAAGATGCATGTGAAAACTGGGGTTTCTTTGAG : CTTGTGAATCATGGGATTTCTCATGAATTGCTGGACACAGTGGAGAATTTAACTAAGGGACATTACAAAAAGTGCATGGAACAAAGGTTTAAAGAAATGGTGGCAAGTAAAGGACTTGAAGCTGTCCAAACTGAAATTGATGATCTTGATTGGGAGAGCACTTTCTTCTTGAAACATCTTCCTGTTTCCAATGTGTATGAAGTTCCTGACCTGGATGATGAATACAGGTTTATAAAACAAAAAAGATCCAATTTTTATCATTTCATATAAACATATCCTATACTAGATGGCTCCAAATATCTGGGATTTGTATCAGTTCAGCTTGTCACTTATAAAGTGACAAACTTTACTGTTGATCAGAGTCTATCCTTAGTCTTGAGTCTTGATTAGTAGTTCTTTTTTTTTTTTTAACTTAACTTATATTACCTATAACCTCATGACAGGAAAGTTATGAAAGATTTTGCACTG</gDNA_template>
            <first_frame> A  N  *  K  I  N  *  R  V  S  L  V  R  K  E  K  K  T  E  K  W  R  V  I  S  Q  L  W  I  W  G  C  F  K  L  R  K  G  L  K  Q  W  T  K  S  K  M  H  V  K  T  G  V  S  L  S :   L  *  I  M  G  F  L  M  N  C  W  T  Q  W  R  I  *  L  R  D  I  T  K  S  A  W  N  K  G  L  K  K  W  W  Q  V  K  D  L  K  L  S  K  L  K  L  M  I  L  I  G  R  A  L  S  S  *  N  I  F  L  F  P  M  C  M  K  F  L  T  W  M  M  N  T  G  L  *  N  K  K  D  P  I  F  I  I  S  Y  K  H  I  L  Y  *  M  A  P  N  I  W  D  L  Y  Q  F  S  L  S  L  I  K  *  Q  T  L  L  L  I  R  V  Y  P  *  S  *  V  L  I  S  S  S  F  F  F  F  N  L  T  Y  I  T  Y  N  L  M  T  G  K  L  *  K  I  L  H   </first_frame>
            <second_frame>  Q  I  K  R  *  T  R  E  S  A  *  *  E  K  K  K  K  Q  K  N  G  E  *  F  P  S  C  G  Y  G  V  A  S  N  *  E  K  A  *  S  N  G  Q  N  Q  R  C  M  *  K  L  G  F  L  *   : A  C  E  S  W  D  F  S  *  I  A  G  H  S  G  E  F  N  *  G  T  L  Q  K  V  H  G  T  K  V  *  R  N  G  G  K  *  R  T  *  S  C  P  N  *  N  *  *  S  *  L  G  E  H  F  L  L  E  T  S  S  C  F  Q  C  V  *  S  S  *  P  G  *  *  I  Q  V  Y  K  T  K  K  I  Q  F  L  S  F  H  I  N  I  S  Y  T  R  W  L  Q  I  S  G  I  C  I  S  S  A  C  H  L  *  S  D  K  L  Y  C  *  S  E  S  I  L  S  L  E  S  *  L  V  V  L  F  F  F  L  T  *  L  I  L  P  I  T  S  *  Q  E  S  Y  E  R  F  C  T  </second_frame>
            <third_frame>   K  L  K  D  K  L  E  S  Q  L  S  K  K  R  K  K  N  R  K  M  E  S  N  F  P  V  V  D  M  G  L  L  Q  T  E  K  R  P  E  A  M  D  K  I  K  D  A  C  E  N  W  G  F  F  E  :  L  V  N  H  G  I  S  H  E  L  L  D  T  V  E  N  L  T  K  G  H  Y  K  K  C  M  E  Q  R  F  K  E  M  V  A  S  K  G  L  E  A  V  Q  T  E  I  D  D  L  D  W  E  S  T  F  F  L  K  H  L  P  V  S  N  V  Y  E  V  P  D  L  D  D  E  Y  R  F  I  K  Q  K  R  S  N  F  Y  H  F  I  *  T  Y  P  I  L  D  G  S  K  Y  L  G  F  V  S  V  Q  L  V  T  Y  K  V  T  N  F  T  V  D  Q  S  L  S  L  V  L  S  L  D  *  *  F  F  F  F  F  *  L  N  L  Y  Y  L  *  P  H  D  R  K  V  M  K  D  F  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43177" stop="43013"/>
                    <exon start="42901" stop="42632"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKDKLESQLSKKRKKNRKMESNFPVVDMGLLQTEKRPEAMDKIKDACENWGFFELVNHGISHELLDTVENLTKGHYKKCMEQRFKEMVASKGLEAVQTEIDDLDWESTFFLKHLPVSNVYEVPDLDDEYRFIKQKRSNFYHFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41519" PGL_stop="42034"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41519" e_stop="42034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="41519" e_stop="42034" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41519" stop="42034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTTTTCTTTAAGCATAGATTTCATTAAAGTAAAAGAGGAAACTTTACAATATACCCCATAGAGAACAACCTCAAACAGCTCACTACCAAACAACAGACAATGACACATCAAGTAACATAGTAAATTATTAACTAAAAGGACAACACAGCTTTAGAAACCTTAACTTCTTTAATCCTCTTAATTAGTGTCCTATTAAAACATAAACAAATTCCCCCTTGAAAAGATTATCAAACAGTTTCTATTGGACCTAAGTTGACAGTAGTCTCCACAGCCTTCATTGCTTCAAACCTAGGCTCCTTAGCCTGGAATTTGAGACCTGCATACAACTTCATATAATCTTCAAACACAAATTTTGGATACTTCAATTTGTTGTCCTCTTCTGTCTTCTCAATCAACTCTGGTGCTGGAAATATGACAGCATCACTTCCTGGATTATAAAAGGAAGCTATTGACATCCTAGTGCCATCTTGTTGAGCAATCACTCTGTGCTCAATACTCTTGTATCTTCCATTA</gDNA_template>
            <first_frame> F  V  F  F  K  H  R  F  H  *  S  K  R  G  N  F  T  I  Y  P  I  E  N  N  L  K  Q  L  T  T  K  Q  Q  T  M  T  H  Q  V  T  *  *  I  I  N  *  K  D  N  T  A  L  E  T  L  T  S  L  I  L  L  I  S  V  L  L  K  H  K  Q  I  P  P  *  K  D  Y  Q  T  V  S  I  G  P  K  L  T  V  V  S  T  A  F  I  A  S  N  L  G  S  L  A  W  N  L  R  P  A  Y  N  F  I  *  S  S  N  T  N  F  G  Y  F  N  L  L  S  S  S  V  F  S  I  N  S  G  A  G  N  M  T  A  S  L  P  G  L  *  K  E  A  I  D  I  L  V  P  S  C  *  A  I  T  L  C  S  I  L  L  Y  L  P  L </first_frame>
            <second_frame>  L  F  S  L  S  I  D  F  I  K  V  K  E  E  T  L  Q  Y  T  P  *  R  T  T  S  N  S  S  L  P  N  N  R  Q  *  H  I  K  *  H  S  K  L  L  T  K  R  T  T  Q  L  *  K  P  *  L  L  *  S  S  *  L  V  S  Y  *  N  I  N  K  F  P  L  E  K  I  I  K  Q  F  L  L  D  L  S  *  Q  *  S  P  Q  P  S  L  L  Q  T  *  A  P  *  P  G  I  *  D  L  H  T  T  S  Y  N  L  Q  T  Q  I  L  D  T  S  I  C  C  P  L  L  S  S  Q  S  T  L  V  L  E  I  *  Q  H  H  F  L  D  Y  K  R  K  L  L  T  S  *  C  H  L  V  E  Q  S  L  C  A  Q  Y  S  C  I  F  H   </second_frame>
            <third_frame>   C  F  L  *  A  *  I  S  L  K  *  K  R  K  L  Y  N  I  P  H  R  E  Q  P  Q  T  A  H  Y  Q  T  T  D  N  D  T  S  S  N  I  V  N  Y  *  L  K  G  Q  H  S  F  R  N  L  N  F  F  N  P  L  N  *  C  P  I  K  T  *  T  N  S  P  L  K  R  L  S  N  S  F  Y  W  T  *  V  D  S  S  L  H  S  L  H  C  F  K  P  R  L  L  S  L  E  F  E  T  C  I  Q  L  H  I  I  F  K  H  K  F  W  I  L  Q  F  V  V  L  F  C  L  L  N  Q  L  W  C  W  K  Y  D  S  I  T  S  W  I  I  K  G  S  Y  *  H  P  S  A  I  L  L  S  N  H  S  V  L  N  T  L  V  S  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41773" stop="41973"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDSSLHSLHCFKPRLLSLEFETCIQLHIIFKHKFWILQFVVLFCLLNQLWCWKYDSITSWIIKGSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="59262" PGL_stop="62512"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59262" e_stop="59805"/>
            <exon e_start="60342" e_stop="60537"/>
            <exon e_start="60633" e_stop="61220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59262" e_stop="59805" e_length="544"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60342" e_stop="60537" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60633" e_stop="61220" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59262" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59265" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="61091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59265" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59269" stop="59805"/>
              <exon start="60342" stop="60510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59270" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59271" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59272" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59272" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59272" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59273" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59273" stop="59805"/>
              <exon start="60342" stop="60509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59273" stop="59805"/>
              <exon start="60342" stop="60506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59273" stop="59805"/>
              <exon start="60342" stop="60492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59273" stop="59805"/>
              <exon start="60342" stop="60407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59273" stop="59805"/>
              <exon start="60342" stop="60406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59273" stop="59779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59274" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59274" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59274" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59274" stop="59805"/>
              <exon start="60342" stop="60535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59274" stop="59805"/>
              <exon start="60342" stop="60510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59274" stop="59798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59274" stop="59692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
              <exon start="60342" stop="60528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
              <exon start="60342" stop="60503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
              <exon start="60342" stop="60503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
              <exon start="60342" stop="60501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
              <exon start="60342" stop="60468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
              <exon start="60342" stop="60456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
              <exon start="60342" stop="60401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
              <exon start="60342" stop="60390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
              <exon start="60342" stop="60378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59276" stop="59788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59279" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59280" stop="59805"/>
              <exon start="60342" stop="60509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59281" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59281" stop="59805"/>
              <exon start="60342" stop="60471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59281" stop="59805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59282" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59284" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59284" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59295" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59304" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59323" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59327" stop="59805"/>
              <exon start="60342" stop="60473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59328" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59352" stop="59634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59403" stop="59667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59475" stop="59805"/>
              <exon start="60342" stop="60456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59596" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59596" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59596" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59596" stop="59805"/>
              <exon start="60342" stop="60532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59601" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59601" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59625" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="61128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59736" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="61100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60390" stop="60537"/>
              <exon start="60633" stop="61051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60409" stop="60537"/>
              <exon start="60633" stop="61091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429056" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60478" stop="60537"/>
              <exon start="60633" stop="61091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400360" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60479" stop="60537"/>
              <exon start="60633" stop="61048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60504" stop="60537"/>
              <exon start="60633" stop="61132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60524" stop="60537"/>
              <exon start="60633" stop="61122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60679" stop="61132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60698" stop="61075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60707" stop="61132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60713" stop="61132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60723" stop="61132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60730" stop="61120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60731" stop="61132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60735" stop="61146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60740" stop="61120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60755" stop="61135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60782" stop="61148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60806" stop="61120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60812" stop="61120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60814" stop="61220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60865" stop="61220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60894" stop="61120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGCTTCCCCTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC : GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG : ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGAATCACTTAGCAGGAGACCATTCTAATTTAGAAGCCTTCATATGCTAATCGGAATAGGGTCAAAAATACCCTAAAATTATTTGAAATAA</gDNA_template>
            <first_frame> R  A  S  P  V  F  F  I  S  Y  L  Q  K  I  A  F  C  S  F  S  V  S  L  *  K  W  L  P  S  L  L  S  I  K  F  L  A  E  L  S  K  L  H  P  N  I  Q  N  P  P  P  K  S  Q  L  Y  P  S  P  P  R  I  S  H  Q  K  Q  N  Y  T  E  Q  F  Q  S  K  N  S  H  T  Q  N  Q  N  S  Q  L  K  P  Q  I  T  T  R  K  M  S  G  G  R  K  W  R  K  *  V  R  V  E  *  R  L  W  M  K  N  H  Q  R  S  Q  V  K  L  S  C  *  R  S  N  W  R  I  L  F  M  E  P  I  G  V  *  V  L  A  V  R  L  G  R  K  S  L  N  S  S  H  S  L  S  R  R  T  L  I  Q  H  L  L  K  P  *  L  F  S  T  A  N  G  F  L   : R  T  H  L  F  R  V  C  S  P  C  C  H  G  A  I  C  F  W  F  E  L  K  R  F  H  R  L  S  I  L  R  V  S  L  S  K  T  L  L  S  L  L  D  L  *  L  Q  L  P  L  V  P  M  P  N  S  K  S  E  V  Q  N  A  S  R :   L  N  S  K  K  A  *  L  E  H  P  S  *  Q  I  P  S  Y  C  L  R  T  L  N  S  W  D  K  R  L  I  *  A  P  S  K  A  *  L  L  Q  S  K  T  Q  L  P  R  W  P  S  P  F  Q  V  N  H  Q  L  S  F  L  F  P  I  T  M  H  N  H  G  C  *  Q  P  T  W  M  M  S  L  G  S  P  E  E  M  L  A  V  Y  L  C  *  S  R  K  A  V  P  S  *  S  L  K  R  H  M  F  L  E  L  C  F  S  S  *  Y  R  R  A  N  T  R  K  *  K  N  M  M  *  T  K  N  K  F  S  S  S  Q  T  L  *  M  A  C  P  H  D  L  Y  L  W  H  I  I  K  L  *  L  E  R  S  *  H  M  N  H  L  A  G  D  H  S  N  L  E  A  F  I  C  *  S  E  *  G  Q  K  Y  P  K  I  I  *  N   </first_frame>
            <second_frame>  E  L  P  L  F  S  S  F  H  I  Y  K  K  *  H  S  A  L  S  L  F  H  S  E  N  G  F  H  L  F  S  Q  S  N  S  L  Q  N  S  P  N  Y  I  P  I  F  K  T  H  L  Q  N  L  N  F  T  H  L  L  H  E  F  P  I  K  N  R  T  T  Q  S  N  F  S  Q  R  I  H  I  P  K  T  K  I  H  S  S  S  H  K  L  R  Q  G  R  *  V  G  A  G  S  G  E  N  K  S  G  W  S  S  G  C  G  *  R  T  T  K  G  A  K  *  N  *  V  A  E  E  A  I  G  G  F  F  L  W  N  Q  *  G  F  E  C  *  Q  *  D  *  G  G  N  R  *  T  H  H  T  A  *  V  E  E  P  *  S  S  T  Y  *  S  L  D  S  S  Q  R  Q  M  D  S  C  :  V  H  I  F  F  G  F  V  P  L  V  V  T  G  Q  S  A  S  G  S  S  *  R  D  F  T  D  Y  R  F  *  E  F  H  C  P  K  L  C  C  L  C  W  T  F  S  Y  N  F  H  *  Y  Q  C  Q  I  R  S  Q  K  S  K  T  R  P   : D  *  I  R  R  R  H  N  W  N  T  P  V  D  R  F  H  R  I  A  *  E  R  *  I  L  G  T  K  D  *  S  K  P  L  Q  R  L  D  Y  F  S  P  R  H  S  F  L  G  G  Q  V  H  F  K  S  T  T  N  *  V  S  Y  F  Q  *  Q  C  T  I  M  A  A  D  N  L  L  G  *  *  A  *  D  L  Q  R  R  C  W  Q  C  I  C  V  D  Q  G  R  Q  S  P  L  E  A  L  K  D  T  C  F  W  S  Y  V  F  H  H  N  I  G  E  Q  T  L  E  S  K  K  I  *  C  K  L  K  I  S  F  P  Q  V  K  L  Y  R  W  L  V  L  M  I  C  T  Y  G  I  L  L  N  Y  S  L  K  E  V  N  I  *  I  T  *  Q  E  T  I  L  I  *  K  P  S  Y  A  N  R  N  R  V  K  N  T  L  K  L  F  E  I  </second_frame>
            <third_frame>   S  F  P  C  F  L  H  F  I  F  T  K  N  S  I  L  L  F  L  C  F  T  L  K  M  A  S  I  S  S  L  N  Q  I  P  C  R  T  L  Q  I  T  S  Q  Y  S  K  P  T  S  K  I  S  T  L  P  I  S  S  T  N  F  P  S  K  T  E  L  H  R  A  I  S  V  K  E  F  T  Y  P  K  P  K  F  T  A  Q  A  T  N  Y  D  K  E  D  E  W  G  P  E  V  E  K  I  S  P  G  G  V  A  V  V  D  E  E  P  P  K  E  P  S  E  I  E  L  L  K  K  Q  L  A  D  S  F  Y  G  T  N  R  G  L  S  A  S  S  E  T  R  A  E  I  V  E  L  I  T  Q  L  E  S  K  N  P  N  P  A  P  T  E  A  L  T  L  L  N  G  K  W  I  L  A :   Y  T  S  F  S  G  L  F  P  L  L  S  R  G  N  L  L  L  V  R  V  E  E  I  S  Q  T  I  D  S  E  S  F  T  V  Q  N  S  V  V  F  A  G  P  L  A  T  T  S  I  S  T  N  A  K  F  E  V  R  S  P  K  R  V  Q  :  I  K  F  E  E  G  I  I  G  T  P  Q  L  T  D  S  I  V  L  P  E  N  V  E  F  L  G  Q  K  I  D  L  S  P  F  K  G  L  I  T  S  V  Q  D  T  A  S  S  V  A  K  S  I  S  S  Q  P  P  I  K  F  P  I  S  N  N  N  A  Q  S  W  L  L  T  T  Y  L  D  D  E  L  R  I  S  R  G  D  A  G  S  V  F  V  L  I  K  E  G  S  P  L  L  K  P  *  K  T  H  V  F  G  V  M  F  F  I  I  I  *  E  S  K  H  *  K  V  K  K  Y  D  V  N  *  K  *  V  F  L  K  S  N  S  I  D  G  L  S  S  *  S  V  L  M  A  Y  Y  *  I  I  A  *  K  K  L  T  Y  E  S  L  S  R  R  P  F  *  F  R  S  L  H  M  L  I  G  I  G  S  K  I  P  *  N  Y  L  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59264" stop="59805"/>
                    <exon start="60342" stop="60537"/>
                    <exon start="60633" stop="60947"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFPCFLHFIFTKNSILLFLCFTLKMASISSLNQIPCRTLQITSQYSKPTSKISTLPISSTNFPSKTELHRAISVKEFTYPKPKFTAQATNYDKEDEWGPEVEKISPGGVAVVDEEPPKEPSEIELLKKQLADSFYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLLLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDLSPFKGLITSVQDTASSVAKSISSQPPIKFPISNNNAQSWLLTTYLDDELRISRGDAGSVFVLIKEGSPLLKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59262" e_stop="59805"/>
            <exon e_start="60342" e_stop="60537"/>
            <exon e_start="60633" e_stop="61133"/>
            <exon e_start="62482" e_stop="62512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.742"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59262" e_stop="59805" e_length="544"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="59806" i_stop="60341" i_length="536"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60342" e_stop="60537" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60538" i_stop="60632" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60633" e_stop="61133" e_length="501"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61134" i_stop="62481" i_length="1348"/>
          </intron>
          <exon e_serial="4" e_score="0.742">
            <gDNA_exon_boundary e_start="62482" e_stop="62512" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59262" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59265" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="61091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59265" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59269" stop="59805"/>
              <exon start="60342" stop="60510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59270" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59271" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59272" stop="59805"/>
              <exon start="60342" stop="60537"/>
              <exon start="60633" stop="60710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729448" strand="+"/>
          </PGS_line>
          <PGS_line>
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          <PGS_line>
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        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGCTTCCCCTGTTTTCTTCATTTCATATTTACAAAAAATAGCATTCTGCTCTTTCTCTGTTTCACTCTGAAAATGGCTTCCATCTCTTCTCTCAATCAAATTCCTTGCAGAACTCTCCAAATTACATCCCAATATTCAAAACCCACCTCCAAAATCTCAACTTTACCCATCTCCTCCACGAATTTCCCATCAAAAACAGAACTACACAGAGCAATTTCAGTCAAAGAATTCACATACCCAAAACCAAAATTCACAGCTCAAGCCACAAATTACGACAAGGAAGATGAGTGGGGGCCGGAAGTGGAGAAAATAAGTCCGGGTGGAGTAGCGGTTGTGGATGAAGAACCACCAAAGGAGCCAAGTGAAATTGAGTTGCTGAAGAAGCAATTGGCGGATTCTTTTTATGGAACCAATAGGGGTTTGAGTGCTAGCAGTGAGACTAGGGCGGAAATCGTTGAACTCATCACACAGCTTGAGTCGAAGAACCCTAATCCAGCACCTACTGAAGCCTTGACTCTTCTCAACGGCAAATGGATTCTTGC : GTACACATCTTTTTCGGGTTTGTTCCCCTTGTTGTCACGGGGCAATCTGCTTCTGGTTCGAGTTGAAGAGATTTCACAGACTATCGATTCTGAGAGTTTCACTGTCCAAAACTCTGTTGTCTTTGCTGGACCTTTAGCTACAACTTCCATTAGTACCAATGCCAAATTCGAAGTCAGAAGTCCAAAACGCGTCCAG : ATTAAATTCGAAGAAGGCATAATTGGAACACCCCAGTTGACAGATTCCATCGTATTGCCTGAGAACGTTGAATTCTTGGGACAAAAGATTGATCTAAGCCCCTTCAAAGGCTTGATTACTTCAGTCCAAGACACAGCTTCCTCGGTGGCCAAGTCCATTTCAAGTCAACCACCAATTAAGTTTCCTATTTCCAATAACAATGCACAATCATGGCTGCTGACAACCTACTTGGATGATGAGCTTAGGATCTCCAGAGGAGATGCTGGCAGTGTATTTGTGTTGATCAAGGAAGGCAGTCCCCTCTTGAAGCCTTAAAAGACACATGTTTTTGGAGTTATGTTTTTCATCATAATATAGGAGAGCAAACACTAGAAAGTAAAAAAATATGATGTAAACTAAAAATAAGTTTTCCTCAAGTCAAACTCTATAGATGGCTTGTCCTCATGATCTGTACTTATGGCATATTATTAAATTATAGCTTGAAAGAAGTTAACATATGAA : AAAAAAGGATTGCAAAAAAAAAAAAGAATAA</gDNA_template>
            <first_frame> R  A  S  P  V  F  F  I  S  Y  L  Q  K  I  A  F  C  S  F  S  V  S  L  *  K  W  L  P  S  L  L  S  I  K  F  L  A  E  L  S  K  L  H  P  N  I  Q  N  P  P  P  K  S  Q  L  Y  P  S  P  P  R  I  S  H  Q  K  Q  N  Y  T  E  Q  F  Q  S  K  N  S  H  T  Q  N  Q  N  S  Q  L  K  P  Q  I  T  T  R  K  M  S  G  G  R  K  W  R  K  *  V  R  V  E  *  R  L  W  M  K  N  H  Q  R  S  Q  V  K  L  S  C  *  R  S  N  W  R  I  L  F  M  E  P  I  G  V  *  V  L  A  V  R  L  G  R  K  S  L  N  S  S  H  S  L  S  R  R  T  L  I  Q  H  L  L  K  P  *  L  F  S  T  A  N  G  F  L   : R  T  H  L  F  R  V  C  S  P  C  C  H  G  A  I  C  F  W  F  E  L  K  R  F  H  R  L  S  I  L  R  V  S  L  S  K  T  L  L  S  L  L  D  L  *  L  Q  L  P  L  V  P  M  P  N  S  K  S  E  V  Q  N  A  S  R :   L  N  S  K  K  A  *  L  E  H  P  S  *  Q  I  P  S  Y  C  L  R  T  L  N  S  W  D  K  R  L  I  *  A  P  S  K  A  *  L  L  Q  S  K  T  Q  L  P  R  W  P  S  P  F  Q  V  N  H  Q  L  S  F  L  F  P  I  T  M  H  N  H  G  C  *  Q  P  T  W  M  M  S  L  G  S  P  E  E  M  L  A  V  Y  L  C  *  S  R  K  A  V  P  S  *  S  L  K  R  H  M  F  L  E  L  C  F  S  S  *  Y  R  R  A  N  T  R  K  *  K  N  M  M  *  T  K  N  K  F  S  S  S  Q  T  L  *  M  A  C  P  H  D  L  Y  L  W  H  I  I  K  L  *  L  E  R  S  *  H  M  K :   K  K  D  C  K  K  K  K  E  * </first_frame>
            <second_frame>  E  L  P  L  F  S  S  F  H  I  Y  K  K  *  H  S  A  L  S  L  F  H  S  E  N  G  F  H  L  F  S  Q  S  N  S  L  Q  N  S  P  N  Y  I  P  I  F  K  T  H  L  Q  N  L  N  F  T  H  L  L  H  E  F  P  I  K  N  R  T  T  Q  S  N  F  S  Q  R  I  H  I  P  K  T  K  I  H  S  S  S  H  K  L  R  Q  G  R  *  V  G  A  G  S  G  E  N  K  S  G  W  S  S  G  C  G  *  R  T  T  K  G  A  K  *  N  *  V  A  E  E  A  I  G  G  F  F  L  W  N  Q  *  G  F  E  C  *  Q  *  D  *  G  G  N  R  *  T  H  H  T  A  *  V  E  E  P  *  S  S  T  Y  *  S  L  D  S  S  Q  R  Q  M  D  S  C  :  V  H  I  F  F  G  F  V  P  L  V  V  T  G  Q  S  A  S  G  S  S  *  R  D  F  T  D  Y  R  F  *  E  F  H  C  P  K  L  C  C  L  C  W  T  F  S  Y  N  F  H  *  Y  Q  C  Q  I  R  S  Q  K  S  K  T  R  P   : D  *  I  R  R  R  H  N  W  N  T  P  V  D  R  F  H  R  I  A  *  E  R  *  I  L  G  T  K  D  *  S  K  P  L  Q  R  L  D  Y  F  S  P  R  H  S  F  L  G  G  Q  V  H  F  K  S  T  T  N  *  V  S  Y  F  Q  *  Q  C  T  I  M  A  A  D  N  L  L  G  *  *  A  *  D  L  Q  R  R  C  W  Q  C  I  C  V  D  Q  G  R  Q  S  P  L  E  A  L  K  D  T  C  F  W  S  Y  V  F  H  H  N  I  G  E  Q  T  L  E  S  K  K  I  *  C  K  L  K  I  S  F  P  Q  V  K  L  Y  R  W  L  V  L  M  I  C  T  Y  G  I  L  L  N  Y  S  L  K  E  V  N  I  *   : K  K  R  I  A  K  K  K  K  N   </second_frame>
            <third_frame>   S  F  P  C  F  L  H  F  I  F  T  K  N  S  I  L  L  F  L  C  F  T  L  K  M  A  S  I  S  S  L  N  Q  I  P  C  R  T  L  Q  I  T  S  Q  Y  S  K  P  T  S  K  I  S  T  L  P  I  S  S  T  N  F  P  S  K  T  E  L  H  R  A  I  S  V  K  E  F  T  Y  P  K  P  K  F  T  A  Q  A  T  N  Y  D  K  E  D  E  W  G  P  E  V  E  K  I  S  P  G  G  V  A  V  V  D  E  E  P  P  K  E  P  S  E  I  E  L  L  K  K  Q  L  A  D  S  F  Y  G  T  N  R  G  L  S  A  S  S  E  T  R  A  E  I  V  E  L  I  T  Q  L  E  S  K  N  P  N  P  A  P  T  E  A  L  T  L  L  N  G  K  W  I  L  A :   Y  T  S  F  S  G  L  F  P  L  L  S  R  G  N  L  L  L  V  R  V  E  E  I  S  Q  T  I  D  S  E  S  F  T  V  Q  N  S  V  V  F  A  G  P  L  A  T  T  S  I  S  T  N  A  K  F  E  V  R  S  P  K  R  V  Q  :  I  K  F  E  E  G  I  I  G  T  P  Q  L  T  D  S  I  V  L  P  E  N  V  E  F  L  G  Q  K  I  D  L  S  P  F  K  G  L  I  T  S  V  Q  D  T  A  S  S  V  A  K  S  I  S  S  Q  P  P  I  K  F  P  I  S  N  N  N  A  Q  S  W  L  L  T  T  Y  L  D  D  E  L  R  I  S  R  G  D  A  G  S  V  F  V  L  I  K  E  G  S  P  L  L  K  P  *  K  T  H  V  F  G  V  M  F  F  I  I  I  *  E  S  K  H  *  K  V  K  K  Y  D  V  N  *  K  *  V  F  L  K  S  N  S  I  D  G  L  S  S  *  S  V  L  M  A  Y  Y  *  I  I  A  *  K  K  L  T  Y  E  :  K  K  G  L  Q  K  K  K  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59264" stop="59805"/>
                    <exon start="60342" stop="60537"/>
                    <exon start="60633" stop="60947"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFPCFLHFIFTKNSILLFLCFTLKMASISSLNQIPCRTLQITSQYSKPTSKISTLPISSTNFPSKTELHRAISVKEFTYPKPKFTAQATNYDKEDEWGPEVEKISPGGVAVVDEEPPKEPSEIELLKKQLADSFYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLLLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDLSPFKGLITSVQDTASSVAKSISSQPPIKFPISNNNAQSWLLTTYLDDELRISRGDAGSVFVLIKEGSPLLKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="61136" PGL_stop="60743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61136" e_stop="60743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="61136" e_stop="60743" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61136" stop="60743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTCATATGTTAACTTCTTTCAAGCTATAATTTAATAATATGCCATAAGTACAGATCATGAGGACAAGCCATCTATAGAGTTTGACTTGAGGAAAACTTATTTTTAGTTTACATCATATTTTTTTACTTTCTAGTGTTTGCTCTCCTATATTATGATGAAAAACATAACTCCAAAAACATGTGTCTTTTAAGGCTTCAAGAGGGGACTGCCTTCCTTGATCAACACAAATACACTGCCAGCATCTCCTCTGGAGATCCTAAGCTCATCATCCAAGTAGGTTGTCAGCAGCCATGATTGTGCATTGTTATTGGAAATAGGAAACTTAATTGGTGGTTGACTTGAAATGGACTTGGCCACCGAGGAAGCTGTGTCTTGGACTGAAGTAATCAAG</gDNA_template>
            <first_frame> *  F  I  C  *  L  L  S  S  Y  N  L  I  I  C  H  K  Y  R  S  *  G  Q  A  I  Y  R  V  *  L  E  E  N  L  F  L  V  Y  I  I  F  F  Y  F  L  V  F  A  L  L  Y  Y  D  E  K  H  N  S  K  N  M  C  L  L  R  L  Q  E  G  T  A  F  L  D  Q  H  K  Y  T  A  S  I  S  S  G  D  P  K  L  I  I  Q  V  G  C  Q  Q  P  *  L  C  I  V  I  G  N  R  K  L  N  W  W  L  T  *  N  G  L  G  H  R  G  S  C  V  L  D  *  S  N  Q  </first_frame>
            <second_frame>  D  S  Y  V  N  F  F  Q  A  I  I  *  *  Y  A  I  S  T  D  H  E  D  K  P  S  I  E  F  D  L  R  K  T  Y  F  *  F  T  S  Y  F  F  T  F  *  C  L  L  S  Y  I  M  M  K  N  I  T  P  K  T  C  V  F  *  G  F  K  R  G  L  P  S  L  I  N  T  N  T  L  P  A  S  P  L  E  I  L  S  S  S  S  K  *  V  V  S  S  H  D  C  A  L  L  L  E  I  G  N  L  I  G  G  *  L  E  M  D  L  A  T  E  E  A  V  S  W  T  E  V  I  K </second_frame>
            <third_frame>   I  H  M  L  T  S  F  K  L  *  F  N  N  M  P  *  V  Q  I  M  R  T  S  H  L  *  S  L  T  *  G  K  L  I  F  S  L  H  H  I  F  L  L  S  S  V  C  S  P  I  L  *  *  K  T  *  L  Q  K  H  V  S  F  K  A  S  R  G  D  C  L  P  *  S  T  Q  I  H  C  Q  H  L  L  W  R  S  *  A  H  H  P  S  R  L  S  A  A  M  I  V  H  C  Y  W  K  *  E  T  *  L  V  V  D  L  K  W  T  W  P  P  R  K  L  C  L  G  L  K  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61049" stop="60840"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEENLFLVYIIFFYFLVFALLYYDEKHNSKNMCLLRLQEGTAFLDQHKYTASISSGDPKLIIQVGCQQP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="62720" PGL_stop="72610"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62720" e_stop="62995"/>
            <exon e_start="63638" e_stop="63799"/>
            <exon e_start="63890" e_stop="64011"/>
            <exon e_start="64121" e_stop="64174"/>
            <exon e_start="64280" e_stop="64386"/>
            <exon e_start="64509" e_stop="64614"/>
            <exon e_start="65200" e_stop="65263"/>
            <exon e_start="66879" e_stop="66967"/>
            <exon e_start="67501" e_stop="67632"/>
            <exon e_start="67746" e_stop="67916"/>
            <exon e_start="67990" e_stop="68105"/>
            <exon e_start="68216" e_stop="68327"/>
            <exon e_start="68491" e_stop="68575"/>
            <exon e_start="68680" e_stop="68724"/>
            <exon e_start="68840" e_stop="68908"/>
            <exon e_start="69050" e_stop="69328"/>
            <exon e_start="69593" e_stop="69606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.796" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62720" e_stop="62995" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.934">
            <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63638" e_stop="63799" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.979">
            <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63890" e_stop="64011" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64121" e_stop="64174" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64280" e_stop="64386" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.873">
            <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64509" e_stop="64614" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65200" e_stop="65263" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.836" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66879" e_stop="66967" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67501" e_stop="67632" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67746" e_stop="67916" e_length="171"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67990" e_stop="68105" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="0.969" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="68216" e_stop="68327" e_length="112"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
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              <exon start="63682" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63941" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63957" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64134" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64134" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64134" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64153" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64154" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64161" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64310" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64335" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64348" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64514" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64543" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64586" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65201" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65230" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67539" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67755" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67856" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67905" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69328"/>
              <exon start="69593" stop="69606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577777" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68094" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG : AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG : ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG : GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG : TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG : AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG : ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT : TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG : GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG : GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG : GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG : TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG : GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG : GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG : GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG : GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAA : CAAATTTGAAAAAA</gDNA_template>
            <first_frame> F  G  L  S  S  L  N  L  F  T  A  T  P  H  *  P  P  F  S  F  L  L  R  R  F  Q  W  P  P  P  L  F  L  C  L  T  T  E  S  *  L  L  P  L  S  L  R  V  P  D  D  M  L  P  F  T  V  K  F  K  T  V  V  *  I  T  L  F  L  F  L  L  F  S  E  A  L  S  K  S  L  M  V  L  L  H  L  P  P  V  I  Q  :  R  R  L  Q  S  F  F  L  P  Y  T  D  N  H  L  F  H  W  C  L  M  I  L  G  M  L  R  *  I  K  S  *  K  *  E  W  C  Y  L  E  A  K  L  P  E  D  I  M  L  F  L  E  F  L  :  I  I  C  R  L  I  A  R  E  A  Q  C  M  D  S  G  V  D  Q  L  E  S  *  R  E  S  M  W  G  *  P  R  S  S  F  T  H  T  E  I  R :   V  D  L  I  *  F  A  V  V  G  T  R  L  R  L  Q  S  S :   L  S  K  L  K  R  Q  Q  R  S  S  I  *  M  V  L  S  *  L  V  E  M  T  P  I  Q  M  L  V  F  L  L  R  T  S   : E  V  K  I  *  K  L  G  L  L  D  A  R  K  P  *  M  V  T  *  N  R  K  R  F  P  Q  V  L  A  L  I  R  H  A  R :   Y  M  Q  K  *  L  G  M  *  W  *  M  L  D  Q  Q  E  N  T  I  I  :  L  C  G  S  W  G  V  L  L  H  T  L  L  *  S  V  L  C  K  L  I  Q  T  L  L  *  L  E  K  R :   Y  L  Q  R  N  *  L  L  R  M  L  R  I  T  L  L  M  W  S  A  S  A  Q  S  Q  V  T  I  M  E  L  F  S  F  P  K  D  L  *  I  S  F  L  R :   F  S  N  S  L  R  N  *  M  K  Y  W  H  M  M  S  *  M  K  L  V  F  G  K  R  N  L  L  P  S  A  L  S  S  L  S  C  C  P  *  L  F  R  N  N  C  F  L  R  E  I  H  T  A  M  S  R :   L  R  K  L  K  L  R  K  C  L  F  K  W  L  K  L  S  W  I  R  G  S  R  R  V  H  I  M  L  N  L  K  D  S  P  T  F  L   : V  M  K  E  G  V  A  C  H  P  I  L  I  L  H  T  V  T  R  W  G  M  V  Q  D  H  C  F  K  V  G  R  Q  G  *  Y  H  R :   L  V  I  W  L  L  L  L  K  N  G  R  *  V  E  Q  H  S  L  H  *  W  T  *  R  G  D  M  :  A  S  S  S  Q  *  S  R  R  L  W  L  S  L  K  :  V  L  H  S  R  N  L  L  Q  R  G  K  N  G  L  L  T  T  D  T  L  T  Q  :  V  P  F  N  L  L  V  Q  W  R  I  K  *  T  T  L  Y  F  W  S  W  E  *  M  H  R  R  E  G  I  Y  E  L  L  *  N  T  L  V  V  L  *  F  F  R  G  R  T  *  A  L  I  A  Y  V  *  V  V  F  R  L  M  I  Y  V  K  L  E  S  C  F  *  H  M  L  D  Y  K  I  F  N  V  A  F  E  *  Y  N  L  L  F  *  K  :  Q  I  *  K   </first_frame>
            <second_frame>  L  A  S  Q  V  S  T  C  S  L  L  L  L  T  N  P  H  S  L  F  C  S  G  D  F  N  G  R  R  R  S  F  F  A  *  Q  R  R  V  S  F  F  R  *  V  S  G  Y  R  T  I  C  C  R  L  Q  *  S  S  K  Q  S  F  R  S  P  S  S  S  S  F  C  S  R  K  P  F  Q  S  R  *  W  S  S  F  I  C  R  R  S  S  R :   G  D  C  K  A  F  S  F  L  I  R  T  T  I  C  F  I  G  A  *  *  F  W  G  C  C  D  E  S  N  L  E  N  R  S  G  V  I  W  R  P  S  S  R  R  T  *  C  Y  F  W  N  F  * :   L  F  A  D  S  L  Q  G  K  H  N  V  W  I  Q  G  W  T  S  W  S  H  E  G  K  V  C  G  V  D  P  G  V  H  L  P  I  Q  K  S   : G  W  I  *  Y  D  L  Q  W  *  G  Q  D  *  D  S  R  A   : V  *  A  S  *  R  D  S  K  E  A  R  S  R  W  S  C  R  N  W  W  R  *  L  Q  Y  K  C  L  S  S  C  *  E  L  Q  :  K  *  K  F  E  N  S  G  Y  W  M  P  E  N  H  R  W  *  L  K  I  E  R  G  S  H  K  F  W  L  *  Y  G  M  Q   : D  I  C  R  N  D  W  E  C  D  G  R  C  S  I  N  R  K  I  L  S  F :   C  A  A  H  G  A  C  C  F  T  H  Y  S  R  V  C  S  A  N  S  S  K  R  Y  F  D  W  R  R   : G  I  C  K  E  T  D  S  *  E  C  Y  G  L  H  C  *  C  G  L  Q  A  R  R  V  R  L  Q  L  W  S  Y  S  H  S  R  R  T  Y  R  F  H  S  *   : G  S  A  T  H  C  G  T  K  *  N  I  G  T  *  C  R  R  *  S  W  C  L  E  K  E  T  Y  S  P  V  P  *  A  L  *  V  V  A  P  S  Y  S  G  T  T  A  S  *  E  R  S  T  R  Q  C  P   : G  C  E  N  *  N  *  E  N  A  Y  S  N  G  *  N  *  V  G  S  E  E  A  E  G  C  I  *  C  S  I  *  R  T  V  P  L  F  W  :  L  *  R  K  V  W  L  A  I  Q  F  *  F  Y  I  L  L  R  V  G  V  W  C  R  I  T  A  S  K  W  E  D  R  V  D  I  I   : G  W  *  F  G  C  S  C  *  R  M  D  G  R  W  N  S  T  H  C  I  D  G  R  R  E  E  T  W :   Q  V  Q  A  S  D  Q  E  G  Y  G  *  A  *  R :   C  S  I  Q  E  I  C  F  K  E  G  R  M  G  S  *  Q  P  I  H  *  P  R :   S  H  S  I  C  W  S  S  G  E  *  S  K  P  H  F  T  S  G  V  G  S  R  C  I  G  G  R  G  Y  M  N  C  C  E  I  H  L  L  Y  Y  D  F  F  E  G  E  R  K  H  L  S  L  M  F  K  L  F  F  G  *  *  S  M  *  N  S  N  L  A  F  N  I  C  L  I  T  R  F  L  M  W  H  L  N  N  I  I  S  C  F  K  N :   K  F  E  K  </second_frame>
            <third_frame>   W  P  L  K  S  Q  L  V  H  C  Y  S  S  L  T  P  I  L  F  S  A  P  A  I  S  M  A  A  A  A  L  S  L  L  N  N  G  E  L  A  S  S  V  K  S  P  G  T  G  R  Y  A  A  V  Y  S  E  V  Q  N  S  R  L  D  H  P  L  P  L  P  S  V  L  G  S  P  F  K  V  V  D  G  P  P  S  S  A  A  G  H  P   : E  E  I  A  K  L  F  P  S  L  Y  G  Q  P  S  V  S  L  V  P  D  D  S  G  D  V  A  M  N  Q  I  L  K  I  G  V  V  L  S  G  G  Q  A  P  G  G  H  N  V  I  S  G  I  F   : D  Y  L  Q  T  H  C  K  G  S  T  M  Y  G  F  R  G  G  P  A  G  V  M  K  G  K  Y  V  G  L  T  P  E  F  I  Y  P  Y  R  N  Q  :  G  G  F  D  M  I  C  S  G  R  D  K  I  E  T  P  E  Q  :  F  K  Q  A  E  E  T  A  K  K  L  D  L  D  G  L  V  V  I  G  G  D  D  S  N  T  N  A  C  L  L  A  E  N  F  R :   S  K  N  L  K  T  R  V  I  G  C  P  K  T  I  D  G  D  L  K  S  K  E  V  P  T  S  F  G  F  D  T  A  C  K  :  I  Y  A  E  M  I  G  N  V  M  V  D  A  R  S  T  G  K  Y  Y  H   : F  V  R  L  M  G  R  A  A  S  H  I  T  L  E  C  A  L  Q  T  H  P  N  V  T  L  I  G  E  E  :  V  F  A  K  K  L  T  L  K  N  V  T  D  Y  I  A  D  V  V  C  K  R  A  E  S  G  Y  N  Y  G  V  I  L  I  P  E  G  L  I  D  F  I  P  E  :  V  Q  Q  L  I  A  E  L  N  E  I  L  A  H  D  V  V  D  E  A  G  V  W  K  K  K  L  T  P  Q  C  L  E  L  F  E  L  L  P  L  A  I  Q  E  Q  L  L  L  E  R  D  P  H  G  N  V  Q  :  V  A  K  I  E  T  E  K  M  L  I  Q  M  V  E  T  E  L  D  Q  R  K  Q  K  G  A  Y  N  A  Q  F  K  G  Q  S  H  F  F  G :   Y  E  G  R  C  G  L  P  S  N  F  D  S  T  Y  C  Y  A  L  G  Y  G  A  G  S  L  L  Q  S  G  K  T  G  L  I  S  S  :  V  G  N  L  A  A  P  V  E  E  W  T  V  G  G  T  A  L  T  A  L  M  D  V  E  R  R  H   : G  K  F  K  P  V  I  K  K  A  M  V  E  L  E   : G  A  P  F  K  K  F  A  S  K  R  E  E  W  A  L  N  N  R  Y  I  N  P   : G  P  I  Q  F  V  G  P  V  A  N  K  V  N  H  T  L  L  L  E  L  G  V  D  A  *  E  G  G  D  I  *  I  V  V  K  Y  T  C  C  T  M  I  F  S  R  E  N  V  S  T  Y  R  L  C  L  S  C  F  S  A  N  D  L  C  E  T  R  I  L  L  L  T  Y  A  *  L  Q  D  F  *  C  G  I  *  I  I  *  S  L  V  L  K   : T  N  L  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62722" stop="62995"/>
                    <exon start="63638" stop="63799"/>
                    <exon start="63890" stop="64011"/>
                    <exon start="64121" stop="64174"/>
                    <exon start="64280" stop="64386"/>
                    <exon start="64509" stop="64614"/>
                    <exon start="65200" stop="65263"/>
                    <exon start="66879" stop="66967"/>
                    <exon start="67501" stop="67632"/>
                    <exon start="67746" stop="67916"/>
                    <exon start="67990" stop="68105"/>
                    <exon start="68216" stop="68327"/>
                    <exon start="68491" stop="68575"/>
                    <exon start="68680" stop="68724"/>
                    <exon start="68840" stop="68908"/>
                    <exon start="69050" stop="69126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1782</number_coding_nucleotides>
                  <number_encoded_amino_acids>594</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPLKSQLVHCYSSLTPILFSAPAISMAAAALSLLNNGELASSVKSPGTGRYAAVYSEVQNSRLDHPLPLPSVLGSPFKVVDGPPSSAAGHPEEIAKLFPSLYGQPSVSLVPDDSGDVAMNQILKIGVVLSGGQAPGGHNVISGIFDYLQTHCKGSTMYGFRGGPAGVMKGKYVGLTPEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNVTLIGEEVFAKKLTLKNVTDYIADVVCKRAESGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDVVDEAGVWKKKLTPQCLELFELLPLAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELDQRKQKGAYNAQFKGQSHFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEEWTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELGVDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62720" e_stop="62995"/>
            <exon e_start="63638" e_stop="63799"/>
            <exon e_start="63890" e_stop="64011"/>
            <exon e_start="64121" e_stop="64174"/>
            <exon e_start="64280" e_stop="64386"/>
            <exon e_start="64509" e_stop="64614"/>
            <exon e_start="65200" e_stop="65263"/>
            <exon e_start="66879" e_stop="66967"/>
            <exon e_start="67501" e_stop="67632"/>
            <exon e_start="67746" e_stop="67916"/>
            <exon e_start="67990" e_stop="68105"/>
            <exon e_start="68216" e_stop="68327"/>
            <exon e_start="68491" e_stop="68575"/>
            <exon e_start="68680" e_stop="68724"/>
            <exon e_start="68840" e_stop="68908"/>
            <exon e_start="69050" e_stop="69327"/>
            <exon e_start="69593" e_stop="69605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.796" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.921"/>
          <exon-only e_score="0.615"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62720" e_stop="62995" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.934">
            <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63638" e_stop="63799" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.979">
            <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63890" e_stop="64011" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64121" e_stop="64174" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64280" e_stop="64386" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.873">
            <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64509" e_stop="64614" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65200" e_stop="65263" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.836" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66879" e_stop="66967" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67501" e_stop="67632" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67746" e_stop="67916" e_length="171"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67990" e_stop="68105" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="0.969" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="68216" e_stop="68327" e_length="112"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="68491" e_stop="68575" e_length="85"/>
          </exon>
          <intron i_serial="13" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="68680" e_stop="68724" e_length="45"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="68840" e_stop="68908" e_length="69"/>
          </exon>
          <intron i_serial="15" don_prob="0.998" acc_prob="0.796">
            <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141"/>
          </intron>
          <exon e_serial="16" e_score="0.921">
            <gDNA_exon_boundary e_start="69050" e_stop="69327" e_length="278"/>
          </exon>
          <intron i_serial="16" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69328" i_stop="69592" i_length="265"/>
          </intron>
          <exon e_serial="17" e_score="0.615">
            <gDNA_exon_boundary e_start="69593" e_stop="69605" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62720" stop="62995"/>
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              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64134" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64153" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64154" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64161" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64310" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64335" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64348" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64514" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64543" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64586" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65201" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65230" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67539" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67755" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67856" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68094" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68884" stop="68908"/>
              <exon start="69050" stop="69327"/>
              <exon start="69593" stop="69605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG : AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG : ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG : GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG : TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG : AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG : ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT : TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG : GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG : GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG : GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG : TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG : GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG : GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG : GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG : GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAA : CAAATTTGAAAAA</gDNA_template>
            <first_frame> F  G  L  S  S  L  N  L  F  T  A  T  P  H  *  P  P  F  S  F  L  L  R  R  F  Q  W  P  P  P  L  F  L  C  L  T  T  E  S  *  L  L  P  L  S  L  R  V  P  D  D  M  L  P  F  T  V  K  F  K  T  V  V  *  I  T  L  F  L  F  L  L  F  S  E  A  L  S  K  S  L  M  V  L  L  H  L  P  P  V  I  Q  :  R  R  L  Q  S  F  F  L  P  Y  T  D  N  H  L  F  H  W  C  L  M  I  L  G  M  L  R  *  I  K  S  *  K  *  E  W  C  Y  L  E  A  K  L  P  E  D  I  M  L  F  L  E  F  L  :  I  I  C  R  L  I  A  R  E  A  Q  C  M  D  S  G  V  D  Q  L  E  S  *  R  E  S  M  W  G  *  P  R  S  S  F  T  H  T  E  I  R :   V  D  L  I  *  F  A  V  V  G  T  R  L  R  L  Q  S  S :   L  S  K  L  K  R  Q  Q  R  S  S  I  *  M  V  L  S  *  L  V  E  M  T  P  I  Q  M  L  V  F  L  L  R  T  S   : E  V  K  I  *  K  L  G  L  L  D  A  R  K  P  *  M  V  T  *  N  R  K  R  F  P  Q  V  L  A  L  I  R  H  A  R :   Y  M  Q  K  *  L  G  M  *  W  *  M  L  D  Q  Q  E  N  T  I  I  :  L  C  G  S  W  G  V  L  L  H  T  L  L  *  S  V  L  C  K  L  I  Q  T  L  L  *  L  E  K  R :   Y  L  Q  R  N  *  L  L  R  M  L  R  I  T  L  L  M  W  S  A  S  A  Q  S  Q  V  T  I  M  E  L  F  S  F  P  K  D  L  *  I  S  F  L  R :   F  S  N  S  L  R  N  *  M  K  Y  W  H  M  M  S  *  M  K  L  V  F  G  K  R  N  L  L  P  S  A  L  S  S  L  S  C  C  P  *  L  F  R  N  N  C  F  L  R  E  I  H  T  A  M  S  R :   L  R  K  L  K  L  R  K  C  L  F  K  W  L  K  L  S  W  I  R  G  S  R  R  V  H  I  M  L  N  L  K  D  S  P  T  F  L   : V  M  K  E  G  V  A  C  H  P  I  L  I  L  H  T  V  T  R  W  G  M  V  Q  D  H  C  F  K  V  G  R  Q  G  *  Y  H  R :   L  V  I  W  L  L  L  L  K  N  G  R  *  V  E  Q  H  S  L  H  *  W  T  *  R  G  D  M  :  A  S  S  S  Q  *  S  R  R  L  W  L  S  L  K  :  V  L  H  S  R  N  L  L  Q  R  G  K  N  G  L  L  T  T  D  T  L  T  Q  :  V  P  F  N  L  L  V  Q  W  R  I  K  *  T  T  L  Y  F  W  S  W  E  *  M  H  R  R  E  G  I  Y  E  L  L  *  N  T  L  V  V  L  *  F  F  R  G  R  T  *  A  L  I  A  Y  V  *  V  V  F  R  L  M  I  Y  V  K  L  E  S  C  F  *  H  M  L  D  Y  K  I  F  N  V  A  F  E  *  Y  N  L  L  F  *  N :   K  F  E  K </first_frame>
            <second_frame>  L  A  S  Q  V  S  T  C  S  L  L  L  L  T  N  P  H  S  L  F  C  S  G  D  F  N  G  R  R  R  S  F  F  A  *  Q  R  R  V  S  F  F  R  *  V  S  G  Y  R  T  I  C  C  R  L  Q  *  S  S  K  Q  S  F  R  S  P  S  S  S  S  F  C  S  R  K  P  F  Q  S  R  *  W  S  S  F  I  C  R  R  S  S  R :   G  D  C  K  A  F  S  F  L  I  R  T  T  I  C  F  I  G  A  *  *  F  W  G  C  C  D  E  S  N  L  E  N  R  S  G  V  I  W  R  P  S  S  R  R  T  *  C  Y  F  W  N  F  * :   L  F  A  D  S  L  Q  G  K  H  N  V  W  I  Q  G  W  T  S  W  S  H  E  G  K  V  C  G  V  D  P  G  V  H  L  P  I  Q  K  S   : G  W  I  *  Y  D  L  Q  W  *  G  Q  D  *  D  S  R  A   : V  *  A  S  *  R  D  S  K  E  A  R  S  R  W  S  C  R  N  W  W  R  *  L  Q  Y  K  C  L  S  S  C  *  E  L  Q  :  K  *  K  F  E  N  S  G  Y  W  M  P  E  N  H  R  W  *  L  K  I  E  R  G  S  H  K  F  W  L  *  Y  G  M  Q   : D  I  C  R  N  D  W  E  C  D  G  R  C  S  I  N  R  K  I  L  S  F :   C  A  A  H  G  A  C  C  F  T  H  Y  S  R  V  C  S  A  N  S  S  K  R  Y  F  D  W  R  R   : G  I  C  K  E  T  D  S  *  E  C  Y  G  L  H  C  *  C  G  L  Q  A  R  R  V  R  L  Q  L  W  S  Y  S  H  S  R  R  T  Y  R  F  H  S  *   : G  S  A  T  H  C  G  T  K  *  N  I  G  T  *  C  R  R  *  S  W  C  L  E  K  E  T  Y  S  P  V  P  *  A  L  *  V  V  A  P  S  Y  S  G  T  T  A  S  *  E  R  S  T  R  Q  C  P   : G  C  E  N  *  N  *  E  N  A  Y  S  N  G  *  N  *  V  G  S  E  E  A  E  G  C  I  *  C  S  I  *  R  T  V  P  L  F  W  :  L  *  R  K  V  W  L  A  I  Q  F  *  F  Y  I  L  L  R  V  G  V  W  C  R  I  T  A  S  K  W  E  D  R  V  D  I  I   : G  W  *  F  G  C  S  C  *  R  M  D  G  R  W  N  S  T  H  C  I  D  G  R  R  E  E  T  W :   Q  V  Q  A  S  D  Q  E  G  Y  G  *  A  *  R :   C  S  I  Q  E  I  C  F  K  E  G  R  M  G  S  *  Q  P  I  H  *  P  R :   S  H  S  I  C  W  S  S  G  E  *  S  K  P  H  F  T  S  G  V  G  S  R  C  I  G  G  R  G  Y  M  N  C  C  E  I  H  L  L  Y  Y  D  F  F  E  G  E  R  K  H  L  S  L  M  F  K  L  F  F  G  *  *  S  M  *  N  S  N  L  A  F  N  I  C  L  I  T  R  F  L  M  W  H  L  N  N  I  I  S  C  F  K   : T  N  L  K   </second_frame>
            <third_frame>   W  P  L  K  S  Q  L  V  H  C  Y  S  S  L  T  P  I  L  F  S  A  P  A  I  S  M  A  A  A  A  L  S  L  L  N  N  G  E  L  A  S  S  V  K  S  P  G  T  G  R  Y  A  A  V  Y  S  E  V  Q  N  S  R  L  D  H  P  L  P  L  P  S  V  L  G  S  P  F  K  V  V  D  G  P  P  S  S  A  A  G  H  P   : E  E  I  A  K  L  F  P  S  L  Y  G  Q  P  S  V  S  L  V  P  D  D  S  G  D  V  A  M  N  Q  I  L  K  I  G  V  V  L  S  G  G  Q  A  P  G  G  H  N  V  I  S  G  I  F   : D  Y  L  Q  T  H  C  K  G  S  T  M  Y  G  F  R  G  G  P  A  G  V  M  K  G  K  Y  V  G  L  T  P  E  F  I  Y  P  Y  R  N  Q  :  G  G  F  D  M  I  C  S  G  R  D  K  I  E  T  P  E  Q  :  F  K  Q  A  E  E  T  A  K  K  L  D  L  D  G  L  V  V  I  G  G  D  D  S  N  T  N  A  C  L  L  A  E  N  F  R :   S  K  N  L  K  T  R  V  I  G  C  P  K  T  I  D  G  D  L  K  S  K  E  V  P  T  S  F  G  F  D  T  A  C  K  :  I  Y  A  E  M  I  G  N  V  M  V  D  A  R  S  T  G  K  Y  Y  H   : F  V  R  L  M  G  R  A  A  S  H  I  T  L  E  C  A  L  Q  T  H  P  N  V  T  L  I  G  E  E  :  V  F  A  K  K  L  T  L  K  N  V  T  D  Y  I  A  D  V  V  C  K  R  A  E  S  G  Y  N  Y  G  V  I  L  I  P  E  G  L  I  D  F  I  P  E  :  V  Q  Q  L  I  A  E  L  N  E  I  L  A  H  D  V  V  D  E  A  G  V  W  K  K  K  L  T  P  Q  C  L  E  L  F  E  L  L  P  L  A  I  Q  E  Q  L  L  L  E  R  D  P  H  G  N  V  Q  :  V  A  K  I  E  T  E  K  M  L  I  Q  M  V  E  T  E  L  D  Q  R  K  Q  K  G  A  Y  N  A  Q  F  K  G  Q  S  H  F  F  G :   Y  E  G  R  C  G  L  P  S  N  F  D  S  T  Y  C  Y  A  L  G  Y  G  A  G  S  L  L  Q  S  G  K  T  G  L  I  S  S  :  V  G  N  L  A  A  P  V  E  E  W  T  V  G  G  T  A  L  T  A  L  M  D  V  E  R  R  H   : G  K  F  K  P  V  I  K  K  A  M  V  E  L  E   : G  A  P  F  K  K  F  A  S  K  R  E  E  W  A  L  N  N  R  Y  I  N  P   : G  P  I  Q  F  V  G  P  V  A  N  K  V  N  H  T  L  L  L  E  L  G  V  D  A  *  E  G  G  D  I  *  I  V  V  K  Y  T  C  C  T  M  I  F  S  R  E  N  V  S  T  Y  R  L  C  L  S  C  F  S  A  N  D  L  C  E  T  R  I  L  L  L  T  Y  A  *  L  Q  D  F  *  C  G  I  *  I  I  *  S  L  V  L  K  :  Q  I  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62722" stop="62995"/>
                    <exon start="63638" stop="63799"/>
                    <exon start="63890" stop="64011"/>
                    <exon start="64121" stop="64174"/>
                    <exon start="64280" stop="64386"/>
                    <exon start="64509" stop="64614"/>
                    <exon start="65200" stop="65263"/>
                    <exon start="66879" stop="66967"/>
                    <exon start="67501" stop="67632"/>
                    <exon start="67746" stop="67916"/>
                    <exon start="67990" stop="68105"/>
                    <exon start="68216" stop="68327"/>
                    <exon start="68491" stop="68575"/>
                    <exon start="68680" stop="68724"/>
                    <exon start="68840" stop="68908"/>
                    <exon start="69050" stop="69126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1782</number_coding_nucleotides>
                  <number_encoded_amino_acids>594</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPLKSQLVHCYSSLTPILFSAPAISMAAAALSLLNNGELASSVKSPGTGRYAAVYSEVQNSRLDHPLPLPSVLGSPFKVVDGPPSSAAGHPEEIAKLFPSLYGQPSVSLVPDDSGDVAMNQILKIGVVLSGGQAPGGHNVISGIFDYLQTHCKGSTMYGFRGGPAGVMKGKYVGLTPEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNVTLIGEEVFAKKLTLKNVTDYIADVVCKRAESGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDVVDEAGVWKKKLTPQCLELFELLPLAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELDQRKQKGAYNAQFKGQSHFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEEWTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELGVDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62720" e_stop="62995"/>
            <exon e_start="63638" e_stop="63799"/>
            <exon e_start="63890" e_stop="64011"/>
            <exon e_start="64121" e_stop="64174"/>
            <exon e_start="64280" e_stop="64386"/>
            <exon e_start="64509" e_stop="64614"/>
            <exon e_start="65200" e_stop="65263"/>
            <exon e_start="66879" e_stop="66967"/>
            <exon e_start="67501" e_stop="67632"/>
            <exon e_start="67746" e_stop="67916"/>
            <exon e_start="67990" e_stop="68105"/>
            <exon e_start="68216" e_stop="68327"/>
            <exon e_start="68491" e_stop="68575"/>
            <exon e_start="68680" e_stop="68724"/>
            <exon e_start="68840" e_stop="68908"/>
            <exon e_start="69050" e_stop="69346"/>
            <exon e_start="71736" e_stop="71769"/>
            <exon e_start="72591" e_stop="72610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.796" e_score="1.000"/>
          <exon-intron don_prob="0.045" acc_prob="0.907" e_score="0.914"/>
          <exon-intron don_prob="0.546" acc_prob="0.000" e_score="0.529"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62720" e_stop="62995" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.934">
            <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63638" e_stop="63799" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.979">
            <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63890" e_stop="64011" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64121" e_stop="64174" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64280" e_stop="64386" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.873">
            <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64509" e_stop="64614" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65200" e_stop="65263" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.836" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66879" e_stop="66967" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67501" e_stop="67632" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67746" e_stop="67916" e_length="171"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67990" e_stop="68105" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="0.969" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="68216" e_stop="68327" e_length="112"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="68491" e_stop="68575" e_length="85"/>
          </exon>
          <intron i_serial="13" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="68680" e_stop="68724" e_length="45"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="68840" e_stop="68908" e_length="69"/>
          </exon>
          <intron i_serial="15" don_prob="0.998" acc_prob="0.796">
            <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141"/>
          </intron>
          <exon e_serial="16" e_score="0.914">
            <gDNA_exon_boundary e_start="69050" e_stop="69346" e_length="297"/>
          </exon>
          <intron i_serial="16" don_prob="0.045" acc_prob="0.907">
            <gDNA_intron_boundary i_start="69347" i_stop="71735" i_length="2389"/>
          </intron>
          <exon e_serial="17" e_score="0.529">
            <gDNA_exon_boundary e_start="71736" e_stop="71769" e_length="34"/>
          </exon>
          <intron i_serial="17" don_prob="0.546" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71770" i_stop="72590" i_length="821"/>
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              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64134" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64134" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64153" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64154" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64161" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64310" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64335" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64348" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64514" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64543" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64586" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65201" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65230" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67539" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67755" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67856" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68094" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68693" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69346"/>
              <exon start="71736" stop="71769"/>
              <exon start="72591" stop="72610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460625" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG : AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG : ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG : GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG : TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG : AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG : ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT : TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG : GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG : GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG : GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG : TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG : GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG : GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG : GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG : GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAATATTCTCTTCTTATGAAG : ACCTGGAGGAAGGCTGCACCTACAAAACTAGGAT : AAAAAAAAAAACAAATAAAC</gDNA_template>
            <first_frame> F  G  L  S  S  L  N  L  F  T  A  T  P  H  *  P  P  F  S  F  L  L  R  R  F  Q  W  P  P  P  L  F  L  C  L  T  T  E  S  *  L  L  P  L  S  L  R  V  P  D  D  M  L  P  F  T  V  K  F  K  T  V  V  *  I  T  L  F  L  F  L  L  F  S  E  A  L  S  K  S  L  M  V  L  L  H  L  P  P  V  I  Q  :  R  R  L  Q  S  F  F  L  P  Y  T  D  N  H  L  F  H  W  C  L  M  I  L  G  M  L  R  *  I  K  S  *  K  *  E  W  C  Y  L  E  A  K  L  P  E  D  I  M  L  F  L  E  F  L  :  I  I  C  R  L  I  A  R  E  A  Q  C  M  D  S  G  V  D  Q  L  E  S  *  R  E  S  M  W  G  *  P  R  S  S  F  T  H  T  E  I  R :   V  D  L  I  *  F  A  V  V  G  T  R  L  R  L  Q  S  S :   L  S  K  L  K  R  Q  Q  R  S  S  I  *  M  V  L  S  *  L  V  E  M  T  P  I  Q  M  L  V  F  L  L  R  T  S   : E  V  K  I  *  K  L  G  L  L  D  A  R  K  P  *  M  V  T  *  N  R  K  R  F  P  Q  V  L  A  L  I  R  H  A  R :   Y  M  Q  K  *  L  G  M  *  W  *  M  L  D  Q  Q  E  N  T  I  I  :  L  C  G  S  W  G  V  L  L  H  T  L  L  *  S  V  L  C  K  L  I  Q  T  L  L  *  L  E  K  R :   Y  L  Q  R  N  *  L  L  R  M  L  R  I  T  L  L  M  W  S  A  S  A  Q  S  Q  V  T  I  M  E  L  F  S  F  P  K  D  L  *  I  S  F  L  R :   F  S  N  S  L  R  N  *  M  K  Y  W  H  M  M  S  *  M  K  L  V  F  G  K  R  N  L  L  P  S  A  L  S  S  L  S  C  C  P  *  L  F  R  N  N  C  F  L  R  E  I  H  T  A  M  S  R :   L  R  K  L  K  L  R  K  C  L  F  K  W  L  K  L  S  W  I  R  G  S  R  R  V  H  I  M  L  N  L  K  D  S  P  T  F  L   : V  M  K  E  G  V  A  C  H  P  I  L  I  L  H  T  V  T  R  W  G  M  V  Q  D  H  C  F  K  V  G  R  Q  G  *  Y  H  R :   L  V  I  W  L  L  L  L  K  N  G  R  *  V  E  Q  H  S  L  H  *  W  T  *  R  G  D  M  :  A  S  S  S  Q  *  S  R  R  L  W  L  S  L  K  :  V  L  H  S  R  N  L  L  Q  R  G  K  N  G  L  L  T  T  D  T  L  T  Q  :  V  P  F  N  L  L  V  Q  W  R  I  K  *  T  T  L  Y  F  W  S  W  E  *  M  H  R  R  E  G  I  Y  E  L  L  *  N  T  L  V  V  L  *  F  F  R  G  R  T  *  A  L  I  A  Y  V  *  V  V  F  R  L  M  I  Y  V  K  L  E  S  C  F  *  H  M  L  D  Y  K  I  F  N  V  A  F  E  *  Y  N  L  L  F  *  K  Y  S  L  L  M  K  :  T  W  R  K  A  A  P  T  K  L  G   : *  K  K  K  Q  I  N </first_frame>
            <second_frame>  L  A  S  Q  V  S  T  C  S  L  L  L  L  T  N  P  H  S  L  F  C  S  G  D  F  N  G  R  R  R  S  F  F  A  *  Q  R  R  V  S  F  F  R  *  V  S  G  Y  R  T  I  C  C  R  L  Q  *  S  S  K  Q  S  F  R  S  P  S  S  S  S  F  C  S  R  K  P  F  Q  S  R  *  W  S  S  F  I  C  R  R  S  S  R :   G  D  C  K  A  F  S  F  L  I  R  T  T  I  C  F  I  G  A  *  *  F  W  G  C  C  D  E  S  N  L  E  N  R  S  G  V  I  W  R  P  S  S  R  R  T  *  C  Y  F  W  N  F  * :   L  F  A  D  S  L  Q  G  K  H  N  V  W  I  Q  G  W  T  S  W  S  H  E  G  K  V  C  G  V  D  P  G  V  H  L  P  I  Q  K  S   : G  W  I  *  Y  D  L  Q  W  *  G  Q  D  *  D  S  R  A   : V  *  A  S  *  R  D  S  K  E  A  R  S  R  W  S  C  R  N  W  W  R  *  L  Q  Y  K  C  L  S  S  C  *  E  L  Q  :  K  *  K  F  E  N  S  G  Y  W  M  P  E  N  H  R  W  *  L  K  I  E  R  G  S  H  K  F  W  L  *  Y  G  M  Q   : D  I  C  R  N  D  W  E  C  D  G  R  C  S  I  N  R  K  I  L  S  F :   C  A  A  H  G  A  C  C  F  T  H  Y  S  R  V  C  S  A  N  S  S  K  R  Y  F  D  W  R  R   : G  I  C  K  E  T  D  S  *  E  C  Y  G  L  H  C  *  C  G  L  Q  A  R  R  V  R  L  Q  L  W  S  Y  S  H  S  R  R  T  Y  R  F  H  S  *   : G  S  A  T  H  C  G  T  K  *  N  I  G  T  *  C  R  R  *  S  W  C  L  E  K  E  T  Y  S  P  V  P  *  A  L  *  V  V  A  P  S  Y  S  G  T  T  A  S  *  E  R  S  T  R  Q  C  P   : G  C  E  N  *  N  *  E  N  A  Y  S  N  G  *  N  *  V  G  S  E  E  A  E  G  C  I  *  C  S  I  *  R  T  V  P  L  F  W  :  L  *  R  K  V  W  L  A  I  Q  F  *  F  Y  I  L  L  R  V  G  V  W  C  R  I  T  A  S  K  W  E  D  R  V  D  I  I   : G  W  *  F  G  C  S  C  *  R  M  D  G  R  W  N  S  T  H  C  I  D  G  R  R  E  E  T  W :   Q  V  Q  A  S  D  Q  E  G  Y  G  *  A  *  R :   C  S  I  Q  E  I  C  F  K  E  G  R  M  G  S  *  Q  P  I  H  *  P  R :   S  H  S  I  C  W  S  S  G  E  *  S  K  P  H  F  T  S  G  V  G  S  R  C  I  G  G  R  G  Y  M  N  C  C  E  I  H  L  L  Y  Y  D  F  F  E  G  E  R  K  H  L  S  L  M  F  K  L  F  F  G  *  *  S  M  *  N  S  N  L  A  F  N  I  C  L  I  T  R  F  L  M  W  H  L  N  N  I  I  S  C  F  K  N  I  L  F  L  *  R :   P  G  G  R  L  H  L  Q  N  *  D  :  K  K  K  N  K  *   </second_frame>
            <third_frame>   W  P  L  K  S  Q  L  V  H  C  Y  S  S  L  T  P  I  L  F  S  A  P  A  I  S  M  A  A  A  A  L  S  L  L  N  N  G  E  L  A  S  S  V  K  S  P  G  T  G  R  Y  A  A  V  Y  S  E  V  Q  N  S  R  L  D  H  P  L  P  L  P  S  V  L  G  S  P  F  K  V  V  D  G  P  P  S  S  A  A  G  H  P   : E  E  I  A  K  L  F  P  S  L  Y  G  Q  P  S  V  S  L  V  P  D  D  S  G  D  V  A  M  N  Q  I  L  K  I  G  V  V  L  S  G  G  Q  A  P  G  G  H  N  V  I  S  G  I  F   : D  Y  L  Q  T  H  C  K  G  S  T  M  Y  G  F  R  G  G  P  A  G  V  M  K  G  K  Y  V  G  L  T  P  E  F  I  Y  P  Y  R  N  Q  :  G  G  F  D  M  I  C  S  G  R  D  K  I  E  T  P  E  Q  :  F  K  Q  A  E  E  T  A  K  K  L  D  L  D  G  L  V  V  I  G  G  D  D  S  N  T  N  A  C  L  L  A  E  N  F  R :   S  K  N  L  K  T  R  V  I  G  C  P  K  T  I  D  G  D  L  K  S  K  E  V  P  T  S  F  G  F  D  T  A  C  K  :  I  Y  A  E  M  I  G  N  V  M  V  D  A  R  S  T  G  K  Y  Y  H   : F  V  R  L  M  G  R  A  A  S  H  I  T  L  E  C  A  L  Q  T  H  P  N  V  T  L  I  G  E  E  :  V  F  A  K  K  L  T  L  K  N  V  T  D  Y  I  A  D  V  V  C  K  R  A  E  S  G  Y  N  Y  G  V  I  L  I  P  E  G  L  I  D  F  I  P  E  :  V  Q  Q  L  I  A  E  L  N  E  I  L  A  H  D  V  V  D  E  A  G  V  W  K  K  K  L  T  P  Q  C  L  E  L  F  E  L  L  P  L  A  I  Q  E  Q  L  L  L  E  R  D  P  H  G  N  V  Q  :  V  A  K  I  E  T  E  K  M  L  I  Q  M  V  E  T  E  L  D  Q  R  K  Q  K  G  A  Y  N  A  Q  F  K  G  Q  S  H  F  F  G :   Y  E  G  R  C  G  L  P  S  N  F  D  S  T  Y  C  Y  A  L  G  Y  G  A  G  S  L  L  Q  S  G  K  T  G  L  I  S  S  :  V  G  N  L  A  A  P  V  E  E  W  T  V  G  G  T  A  L  T  A  L  M  D  V  E  R  R  H   : G  K  F  K  P  V  I  K  K  A  M  V  E  L  E   : G  A  P  F  K  K  F  A  S  K  R  E  E  W  A  L  N  N  R  Y  I  N  P   : G  P  I  Q  F  V  G  P  V  A  N  K  V  N  H  T  L  L  L  E  L  G  V  D  A  *  E  G  G  D  I  *  I  V  V  K  Y  T  C  C  T  M  I  F  S  R  E  N  V  S  T  Y  R  L  C  L  S  C  F  S  A  N  D  L  C  E  T  R  I  L  L  L  T  Y  A  *  L  Q  D  F  *  C  G  I  *  I  I  *  S  L  V  L  K  I  F  S  S  Y  E   : D  L  E  E  G  C  T  Y  K  T  R  I :   K  K  K  T  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62722" stop="62995"/>
                    <exon start="63638" stop="63799"/>
                    <exon start="63890" stop="64011"/>
                    <exon start="64121" stop="64174"/>
                    <exon start="64280" stop="64386"/>
                    <exon start="64509" stop="64614"/>
                    <exon start="65200" stop="65263"/>
                    <exon start="66879" stop="66967"/>
                    <exon start="67501" stop="67632"/>
                    <exon start="67746" stop="67916"/>
                    <exon start="67990" stop="68105"/>
                    <exon start="68216" stop="68327"/>
                    <exon start="68491" stop="68575"/>
                    <exon start="68680" stop="68724"/>
                    <exon start="68840" stop="68908"/>
                    <exon start="69050" stop="69126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1782</number_coding_nucleotides>
                  <number_encoded_amino_acids>594</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPLKSQLVHCYSSLTPILFSAPAISMAAAALSLLNNGELASSVKSPGTGRYAAVYSEVQNSRLDHPLPLPSVLGSPFKVVDGPPSSAAGHPEEIAKLFPSLYGQPSVSLVPDDSGDVAMNQILKIGVVLSGGQAPGGHNVISGIFDYLQTHCKGSTMYGFRGGPAGVMKGKYVGLTPEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNVTLIGEEVFAKKLTLKNVTDYIADVVCKRAESGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDVVDEAGVWKKKLTPQCLELFELLPLAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELDQRKQKGAYNAQFKGQSHFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEEWTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELGVDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="62720" e_stop="62995"/>
            <exon e_start="63638" e_stop="63799"/>
            <exon e_start="63890" e_stop="64011"/>
            <exon e_start="64121" e_stop="64174"/>
            <exon e_start="64280" e_stop="64386"/>
            <exon e_start="64509" e_stop="64614"/>
            <exon e_start="65200" e_stop="65263"/>
            <exon e_start="66879" e_stop="66967"/>
            <exon e_start="67501" e_stop="67632"/>
            <exon e_start="67746" e_stop="67916"/>
            <exon e_start="67990" e_stop="68105"/>
            <exon e_start="68216" e_stop="68327"/>
            <exon e_start="68491" e_stop="68575"/>
            <exon e_start="68680" e_stop="68724"/>
            <exon e_start="68840" e_stop="68908"/>
            <exon e_start="69050" e_stop="69392"/>
            <exon e_start="69593" e_stop="69613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.796" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.971"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62720" e_stop="62995" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.934">
            <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63638" e_stop="63799" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.979">
            <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63890" e_stop="64011" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64121" e_stop="64174" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64280" e_stop="64386" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.873">
            <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64509" e_stop="64614" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65200" e_stop="65263" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.836" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66879" e_stop="66967" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67501" e_stop="67632" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67746" e_stop="67916" e_length="171"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67990" e_stop="68105" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="0.969" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="68216" e_stop="68327" e_length="112"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="68491" e_stop="68575" e_length="85"/>
          </exon>
          <intron i_serial="13" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="68680" e_stop="68724" e_length="45"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="68840" e_stop="68908" e_length="69"/>
          </exon>
          <intron i_serial="15" don_prob="0.998" acc_prob="0.796">
            <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141"/>
          </intron>
          <exon e_serial="16" e_score="0.971">
            <gDNA_exon_boundary e_start="69050" e_stop="69392" e_length="343"/>
          </exon>
          <intron i_serial="16" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69393" i_stop="69592" i_length="200"/>
          </intron>
          <exon e_serial="17" e_score="0.571">
            <gDNA_exon_boundary e_start="69593" e_stop="69613" e_length="21"/>
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            <referenceDNA id="SGN-E369146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64134" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64134" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64153" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64154" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64161" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64310" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64335" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64348" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64514" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64543" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64586" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65201" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65230" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67539" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67755" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67856" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68094" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68272" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69392"/>
              <exon start="69593" stop="69613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369145" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG : AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG : ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG : GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG : TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG : AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG : ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT : TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG : GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG : GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG : GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG : TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG : GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG : GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG : GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG : GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAATATTCTCTTCTTATGAAGGTAAATGAAAAAAAATACATAAGTAGAGCCTTTGCATATTATTACT : CAAATTTGAAAAAAGGCAAAG</gDNA_template>
            <first_frame> F  G  L  S  S  L  N  L  F  T  A  T  P  H  *  P  P  F  S  F  L  L  R  R  F  Q  W  P  P  P  L  F  L  C  L  T  T  E  S  *  L  L  P  L  S  L  R  V  P  D  D  M  L  P  F  T  V  K  F  K  T  V  V  *  I  T  L  F  L  F  L  L  F  S  E  A  L  S  K  S  L  M  V  L  L  H  L  P  P  V  I  Q  :  R  R  L  Q  S  F  F  L  P  Y  T  D  N  H  L  F  H  W  C  L  M  I  L  G  M  L  R  *  I  K  S  *  K  *  E  W  C  Y  L  E  A  K  L  P  E  D  I  M  L  F  L  E  F  L  :  I  I  C  R  L  I  A  R  E  A  Q  C  M  D  S  G  V  D  Q  L  E  S  *  R  E  S  M  W  G  *  P  R  S  S  F  T  H  T  E  I  R :   V  D  L  I  *  F  A  V  V  G  T  R  L  R  L  Q  S  S :   L  S  K  L  K  R  Q  Q  R  S  S  I  *  M  V  L  S  *  L  V  E  M  T  P  I  Q  M  L  V  F  L  L  R  T  S   : E  V  K  I  *  K  L  G  L  L  D  A  R  K  P  *  M  V  T  *  N  R  K  R  F  P  Q  V  L  A  L  I  R  H  A  R :   Y  M  Q  K  *  L  G  M  *  W  *  M  L  D  Q  Q  E  N  T  I  I  :  L  C  G  S  W  G  V  L  L  H  T  L  L  *  S  V  L  C  K  L  I  Q  T  L  L  *  L  E  K  R :   Y  L  Q  R  N  *  L  L  R  M  L  R  I  T  L  L  M  W  S  A  S  A  Q  S  Q  V  T  I  M  E  L  F  S  F  P  K  D  L  *  I  S  F  L  R :   F  S  N  S  L  R  N  *  M  K  Y  W  H  M  M  S  *  M  K  L  V  F  G  K  R  N  L  L  P  S  A  L  S  S  L  S  C  C  P  *  L  F  R  N  N  C  F  L  R  E  I  H  T  A  M  S  R :   L  R  K  L  K  L  R  K  C  L  F  K  W  L  K  L  S  W  I  R  G  S  R  R  V  H  I  M  L  N  L  K  D  S  P  T  F  L   : V  M  K  E  G  V  A  C  H  P  I  L  I  L  H  T  V  T  R  W  G  M  V  Q  D  H  C  F  K  V  G  R  Q  G  *  Y  H  R :   L  V  I  W  L  L  L  L  K  N  G  R  *  V  E  Q  H  S  L  H  *  W  T  *  R  G  D  M  :  A  S  S  S  Q  *  S  R  R  L  W  L  S  L  K  :  V  L  H  S  R  N  L  L  Q  R  G  K  N  G  L  L  T  T  D  T  L  T  Q  :  V  P  F  N  L  L  V  Q  W  R  I  K  *  T  T  L  Y  F  W  S  W  E  *  M  H  R  R  E  G  I  Y  E  L  L  *  N  T  L  V  V  L  *  F  F  R  G  R  T  *  A  L  I  A  Y  V  *  V  V  F  R  L  M  I  Y  V  K  L  E  S  C  F  *  H  M  L  D  Y  K  I  F  N  V  A  F  E  *  Y  N  L  L  F  *  K  Y  S  L  L  M  K  V  N  E  K  K  Y  I  S  R  A  F  A  Y  Y  Y   : S  N  L  K  K  G  K  </first_frame>
            <second_frame>  L  A  S  Q  V  S  T  C  S  L  L  L  L  T  N  P  H  S  L  F  C  S  G  D  F  N  G  R  R  R  S  F  F  A  *  Q  R  R  V  S  F  F  R  *  V  S  G  Y  R  T  I  C  C  R  L  Q  *  S  S  K  Q  S  F  R  S  P  S  S  S  S  F  C  S  R  K  P  F  Q  S  R  *  W  S  S  F  I  C  R  R  S  S  R :   G  D  C  K  A  F  S  F  L  I  R  T  T  I  C  F  I  G  A  *  *  F  W  G  C  C  D  E  S  N  L  E  N  R  S  G  V  I  W  R  P  S  S  R  R  T  *  C  Y  F  W  N  F  * :   L  F  A  D  S  L  Q  G  K  H  N  V  W  I  Q  G  W  T  S  W  S  H  E  G  K  V  C  G  V  D  P  G  V  H  L  P  I  Q  K  S   : G  W  I  *  Y  D  L  Q  W  *  G  Q  D  *  D  S  R  A   : V  *  A  S  *  R  D  S  K  E  A  R  S  R  W  S  C  R  N  W  W  R  *  L  Q  Y  K  C  L  S  S  C  *  E  L  Q  :  K  *  K  F  E  N  S  G  Y  W  M  P  E  N  H  R  W  *  L  K  I  E  R  G  S  H  K  F  W  L  *  Y  G  M  Q   : D  I  C  R  N  D  W  E  C  D  G  R  C  S  I  N  R  K  I  L  S  F :   C  A  A  H  G  A  C  C  F  T  H  Y  S  R  V  C  S  A  N  S  S  K  R  Y  F  D  W  R  R   : G  I  C  K  E  T  D  S  *  E  C  Y  G  L  H  C  *  C  G  L  Q  A  R  R  V  R  L  Q  L  W  S  Y  S  H  S  R  R  T  Y  R  F  H  S  *   : G  S  A  T  H  C  G  T  K  *  N  I  G  T  *  C  R  R  *  S  W  C  L  E  K  E  T  Y  S  P  V  P  *  A  L  *  V  V  A  P  S  Y  S  G  T  T  A  S  *  E  R  S  T  R  Q  C  P   : G  C  E  N  *  N  *  E  N  A  Y  S  N  G  *  N  *  V  G  S  E  E  A  E  G  C  I  *  C  S  I  *  R  T  V  P  L  F  W  :  L  *  R  K  V  W  L  A  I  Q  F  *  F  Y  I  L  L  R  V  G  V  W  C  R  I  T  A  S  K  W  E  D  R  V  D  I  I   : G  W  *  F  G  C  S  C  *  R  M  D  G  R  W  N  S  T  H  C  I  D  G  R  R  E  E  T  W :   Q  V  Q  A  S  D  Q  E  G  Y  G  *  A  *  R :   C  S  I  Q  E  I  C  F  K  E  G  R  M  G  S  *  Q  P  I  H  *  P  R :   S  H  S  I  C  W  S  S  G  E  *  S  K  P  H  F  T  S  G  V  G  S  R  C  I  G  G  R  G  Y  M  N  C  C  E  I  H  L  L  Y  Y  D  F  F  E  G  E  R  K  H  L  S  L  M  F  K  L  F  F  G  *  *  S  M  *  N  S  N  L  A  F  N  I  C  L  I  T  R  F  L  M  W  H  L  N  N  I  I  S  C  F  K  N  I  L  F  L  *  R  *  M  K  K  N  T  *  V  E  P  L  H  I  I  T  :  Q  I  *  K  K  A  K </second_frame>
            <third_frame>   W  P  L  K  S  Q  L  V  H  C  Y  S  S  L  T  P  I  L  F  S  A  P  A  I  S  M  A  A  A  A  L  S  L  L  N  N  G  E  L  A  S  S  V  K  S  P  G  T  G  R  Y  A  A  V  Y  S  E  V  Q  N  S  R  L  D  H  P  L  P  L  P  S  V  L  G  S  P  F  K  V  V  D  G  P  P  S  S  A  A  G  H  P   : E  E  I  A  K  L  F  P  S  L  Y  G  Q  P  S  V  S  L  V  P  D  D  S  G  D  V  A  M  N  Q  I  L  K  I  G  V  V  L  S  G  G  Q  A  P  G  G  H  N  V  I  S  G  I  F   : D  Y  L  Q  T  H  C  K  G  S  T  M  Y  G  F  R  G  G  P  A  G  V  M  K  G  K  Y  V  G  L  T  P  E  F  I  Y  P  Y  R  N  Q  :  G  G  F  D  M  I  C  S  G  R  D  K  I  E  T  P  E  Q  :  F  K  Q  A  E  E  T  A  K  K  L  D  L  D  G  L  V  V  I  G  G  D  D  S  N  T  N  A  C  L  L  A  E  N  F  R :   S  K  N  L  K  T  R  V  I  G  C  P  K  T  I  D  G  D  L  K  S  K  E  V  P  T  S  F  G  F  D  T  A  C  K  :  I  Y  A  E  M  I  G  N  V  M  V  D  A  R  S  T  G  K  Y  Y  H   : F  V  R  L  M  G  R  A  A  S  H  I  T  L  E  C  A  L  Q  T  H  P  N  V  T  L  I  G  E  E  :  V  F  A  K  K  L  T  L  K  N  V  T  D  Y  I  A  D  V  V  C  K  R  A  E  S  G  Y  N  Y  G  V  I  L  I  P  E  G  L  I  D  F  I  P  E  :  V  Q  Q  L  I  A  E  L  N  E  I  L  A  H  D  V  V  D  E  A  G  V  W  K  K  K  L  T  P  Q  C  L  E  L  F  E  L  L  P  L  A  I  Q  E  Q  L  L  L  E  R  D  P  H  G  N  V  Q  :  V  A  K  I  E  T  E  K  M  L  I  Q  M  V  E  T  E  L  D  Q  R  K  Q  K  G  A  Y  N  A  Q  F  K  G  Q  S  H  F  F  G :   Y  E  G  R  C  G  L  P  S  N  F  D  S  T  Y  C  Y  A  L  G  Y  G  A  G  S  L  L  Q  S  G  K  T  G  L  I  S  S  :  V  G  N  L  A  A  P  V  E  E  W  T  V  G  G  T  A  L  T  A  L  M  D  V  E  R  R  H   : G  K  F  K  P  V  I  K  K  A  M  V  E  L  E   : G  A  P  F  K  K  F  A  S  K  R  E  E  W  A  L  N  N  R  Y  I  N  P   : G  P  I  Q  F  V  G  P  V  A  N  K  V  N  H  T  L  L  L  E  L  G  V  D  A  *  E  G  G  D  I  *  I  V  V  K  Y  T  C  C  T  M  I  F  S  R  E  N  V  S  T  Y  R  L  C  L  S  C  F  S  A  N  D  L  C  E  T  R  I  L  L  L  T  Y  A  *  L  Q  D  F  *  C  G  I  *  I  I  *  S  L  V  L  K  I  F  S  S  Y  E  G  K  *  K  K  I  H  K  *  S  L  C  I  L  L  L :   K  F  E  K  R  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62722" stop="62995"/>
                    <exon start="63638" stop="63799"/>
                    <exon start="63890" stop="64011"/>
                    <exon start="64121" stop="64174"/>
                    <exon start="64280" stop="64386"/>
                    <exon start="64509" stop="64614"/>
                    <exon start="65200" stop="65263"/>
                    <exon start="66879" stop="66967"/>
                    <exon start="67501" stop="67632"/>
                    <exon start="67746" stop="67916"/>
                    <exon start="67990" stop="68105"/>
                    <exon start="68216" stop="68327"/>
                    <exon start="68491" stop="68575"/>
                    <exon start="68680" stop="68724"/>
                    <exon start="68840" stop="68908"/>
                    <exon start="69050" stop="69126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1782</number_coding_nucleotides>
                  <number_encoded_amino_acids>594</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPLKSQLVHCYSSLTPILFSAPAISMAAAALSLLNNGELASSVKSPGTGRYAAVYSEVQNSRLDHPLPLPSVLGSPFKVVDGPPSSAAGHPEEIAKLFPSLYGQPSVSLVPDDSGDVAMNQILKIGVVLSGGQAPGGHNVISGIFDYLQTHCKGSTMYGFRGGPAGVMKGKYVGLTPEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNVTLIGEEVFAKKLTLKNVTDYIADVVCKRAESGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDVVDEAGVWKKKLTPQCLELFELLPLAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELDQRKQKGAYNAQFKGQSHFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEEWTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELGVDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="62720" e_stop="62995"/>
            <exon e_start="63638" e_stop="63799"/>
            <exon e_start="63890" e_stop="64011"/>
            <exon e_start="64121" e_stop="64174"/>
            <exon e_start="64280" e_stop="64386"/>
            <exon e_start="64509" e_stop="64614"/>
            <exon e_start="65200" e_stop="65263"/>
            <exon e_start="66879" e_stop="66967"/>
            <exon e_start="67501" e_stop="67632"/>
            <exon e_start="67746" e_stop="67916"/>
            <exon e_start="67990" e_stop="68105"/>
            <exon e_start="68216" e_stop="68327"/>
            <exon e_start="68491" e_stop="68575"/>
            <exon e_start="68680" e_stop="68724"/>
            <exon e_start="68840" e_stop="68908"/>
            <exon e_start="69050" e_stop="69311"/>
            <exon e_start="69593" e_stop="69604"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.796" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.969"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62720" e_stop="62995" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.934">
            <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63638" e_stop="63799" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.979">
            <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63890" e_stop="64011" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64121" e_stop="64174" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64280" e_stop="64386" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.873">
            <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64509" e_stop="64614" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65200" e_stop="65263" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.836" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66879" e_stop="66967" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67501" e_stop="67632" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67746" e_stop="67916" e_length="171"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67990" e_stop="68105" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="0.969" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="68216" e_stop="68327" e_length="112"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="68491" e_stop="68575" e_length="85"/>
          </exon>
          <intron i_serial="13" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="68680" e_stop="68724" e_length="45"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="68840" e_stop="68908" e_length="69"/>
          </exon>
          <intron i_serial="15" don_prob="0.998" acc_prob="0.796">
            <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141"/>
          </intron>
          <exon e_serial="16" e_score="0.969">
            <gDNA_exon_boundary e_start="69050" e_stop="69311" e_length="262"/>
          </exon>
          <intron i_serial="16" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69312" i_stop="69592" i_length="281"/>
          </intron>
          <exon e_serial="17" e_score="0.750">
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              <exon start="67501" stop="67558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64153" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64154" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64161" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64310" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64335" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64348" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64514" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64543" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64586" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65201" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65230" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67539" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67755" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67856" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68094" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68904" stop="68908"/>
              <exon start="69050" stop="69311"/>
              <exon start="69593" stop="69604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224897" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG : AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG : ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG : GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG : TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG : AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG : ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT : TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG : GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG : GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG : GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG : TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG : GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG : GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG : GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG : GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATA : CAAATTTGAAAA</gDNA_template>
            <first_frame> F  G  L  S  S  L  N  L  F  T  A  T  P  H  *  P  P  F  S  F  L  L  R  R  F  Q  W  P  P  P  L  F  L  C  L  T  T  E  S  *  L  L  P  L  S  L  R  V  P  D  D  M  L  P  F  T  V  K  F  K  T  V  V  *  I  T  L  F  L  F  L  L  F  S  E  A  L  S  K  S  L  M  V  L  L  H  L  P  P  V  I  Q  :  R  R  L  Q  S  F  F  L  P  Y  T  D  N  H  L  F  H  W  C  L  M  I  L  G  M  L  R  *  I  K  S  *  K  *  E  W  C  Y  L  E  A  K  L  P  E  D  I  M  L  F  L  E  F  L  :  I  I  C  R  L  I  A  R  E  A  Q  C  M  D  S  G  V  D  Q  L  E  S  *  R  E  S  M  W  G  *  P  R  S  S  F  T  H  T  E  I  R :   V  D  L  I  *  F  A  V  V  G  T  R  L  R  L  Q  S  S :   L  S  K  L  K  R  Q  Q  R  S  S  I  *  M  V  L  S  *  L  V  E  M  T  P  I  Q  M  L  V  F  L  L  R  T  S   : E  V  K  I  *  K  L  G  L  L  D  A  R  K  P  *  M  V  T  *  N  R  K  R  F  P  Q  V  L  A  L  I  R  H  A  R :   Y  M  Q  K  *  L  G  M  *  W  *  M  L  D  Q  Q  E  N  T  I  I  :  L  C  G  S  W  G  V  L  L  H  T  L  L  *  S  V  L  C  K  L  I  Q  T  L  L  *  L  E  K  R :   Y  L  Q  R  N  *  L  L  R  M  L  R  I  T  L  L  M  W  S  A  S  A  Q  S  Q  V  T  I  M  E  L  F  S  F  P  K  D  L  *  I  S  F  L  R :   F  S  N  S  L  R  N  *  M  K  Y  W  H  M  M  S  *  M  K  L  V  F  G  K  R  N  L  L  P  S  A  L  S  S  L  S  C  C  P  *  L  F  R  N  N  C  F  L  R  E  I  H  T  A  M  S  R :   L  R  K  L  K  L  R  K  C  L  F  K  W  L  K  L  S  W  I  R  G  S  R  R  V  H  I  M  L  N  L  K  D  S  P  T  F  L   : V  M  K  E  G  V  A  C  H  P  I  L  I  L  H  T  V  T  R  W  G  M  V  Q  D  H  C  F  K  V  G  R  Q  G  *  Y  H  R :   L  V  I  W  L  L  L  L  K  N  G  R  *  V  E  Q  H  S  L  H  *  W  T  *  R  G  D  M  :  A  S  S  S  Q  *  S  R  R  L  W  L  S  L  K  :  V  L  H  S  R  N  L  L  Q  R  G  K  N  G  L  L  T  T  D  T  L  T  Q  :  V  P  F  N  L  L  V  Q  W  R  I  K  *  T  T  L  Y  F  W  S  W  E  *  M  H  R  R  E  G  I  Y  E  L  L  *  N  T  L  V  V  L  *  F  F  R  G  R  T  *  A  L  I  A  Y  V  *  V  V  F  R  L  M  I  Y  V  K  L  E  S  C  F  *  H  M  L  D  Y  K  I  F  N  V  A  F  E  *  Y   : T  N  L  K  </first_frame>
            <second_frame>  L  A  S  Q  V  S  T  C  S  L  L  L  L  T  N  P  H  S  L  F  C  S  G  D  F  N  G  R  R  R  S  F  F  A  *  Q  R  R  V  S  F  F  R  *  V  S  G  Y  R  T  I  C  C  R  L  Q  *  S  S  K  Q  S  F  R  S  P  S  S  S  S  F  C  S  R  K  P  F  Q  S  R  *  W  S  S  F  I  C  R  R  S  S  R :   G  D  C  K  A  F  S  F  L  I  R  T  T  I  C  F  I  G  A  *  *  F  W  G  C  C  D  E  S  N  L  E  N  R  S  G  V  I  W  R  P  S  S  R  R  T  *  C  Y  F  W  N  F  * :   L  F  A  D  S  L  Q  G  K  H  N  V  W  I  Q  G  W  T  S  W  S  H  E  G  K  V  C  G  V  D  P  G  V  H  L  P  I  Q  K  S   : G  W  I  *  Y  D  L  Q  W  *  G  Q  D  *  D  S  R  A   : V  *  A  S  *  R  D  S  K  E  A  R  S  R  W  S  C  R  N  W  W  R  *  L  Q  Y  K  C  L  S  S  C  *  E  L  Q  :  K  *  K  F  E  N  S  G  Y  W  M  P  E  N  H  R  W  *  L  K  I  E  R  G  S  H  K  F  W  L  *  Y  G  M  Q   : D  I  C  R  N  D  W  E  C  D  G  R  C  S  I  N  R  K  I  L  S  F :   C  A  A  H  G  A  C  C  F  T  H  Y  S  R  V  C  S  A  N  S  S  K  R  Y  F  D  W  R  R   : G  I  C  K  E  T  D  S  *  E  C  Y  G  L  H  C  *  C  G  L  Q  A  R  R  V  R  L  Q  L  W  S  Y  S  H  S  R  R  T  Y  R  F  H  S  *   : G  S  A  T  H  C  G  T  K  *  N  I  G  T  *  C  R  R  *  S  W  C  L  E  K  E  T  Y  S  P  V  P  *  A  L  *  V  V  A  P  S  Y  S  G  T  T  A  S  *  E  R  S  T  R  Q  C  P   : G  C  E  N  *  N  *  E  N  A  Y  S  N  G  *  N  *  V  G  S  E  E  A  E  G  C  I  *  C  S  I  *  R  T  V  P  L  F  W  :  L  *  R  K  V  W  L  A  I  Q  F  *  F  Y  I  L  L  R  V  G  V  W  C  R  I  T  A  S  K  W  E  D  R  V  D  I  I   : G  W  *  F  G  C  S  C  *  R  M  D  G  R  W  N  S  T  H  C  I  D  G  R  R  E  E  T  W :   Q  V  Q  A  S  D  Q  E  G  Y  G  *  A  *  R :   C  S  I  Q  E  I  C  F  K  E  G  R  M  G  S  *  Q  P  I  H  *  P  R :   S  H  S  I  C  W  S  S  G  E  *  S  K  P  H  F  T  S  G  V  G  S  R  C  I  G  G  R  G  Y  M  N  C  C  E  I  H  L  L  Y  Y  D  F  F  E  G  E  R  K  H  L  S  L  M  F  K  L  F  F  G  *  *  S  M  *  N  S  N  L  A  F  N  I  C  L  I  T  R  F  L  M  W  H  L  N  N  I  :  Q  I  *  K </second_frame>
            <third_frame>   W  P  L  K  S  Q  L  V  H  C  Y  S  S  L  T  P  I  L  F  S  A  P  A  I  S  M  A  A  A  A  L  S  L  L  N  N  G  E  L  A  S  S  V  K  S  P  G  T  G  R  Y  A  A  V  Y  S  E  V  Q  N  S  R  L  D  H  P  L  P  L  P  S  V  L  G  S  P  F  K  V  V  D  G  P  P  S  S  A  A  G  H  P   : E  E  I  A  K  L  F  P  S  L  Y  G  Q  P  S  V  S  L  V  P  D  D  S  G  D  V  A  M  N  Q  I  L  K  I  G  V  V  L  S  G  G  Q  A  P  G  G  H  N  V  I  S  G  I  F   : D  Y  L  Q  T  H  C  K  G  S  T  M  Y  G  F  R  G  G  P  A  G  V  M  K  G  K  Y  V  G  L  T  P  E  F  I  Y  P  Y  R  N  Q  :  G  G  F  D  M  I  C  S  G  R  D  K  I  E  T  P  E  Q  :  F  K  Q  A  E  E  T  A  K  K  L  D  L  D  G  L  V  V  I  G  G  D  D  S  N  T  N  A  C  L  L  A  E  N  F  R :   S  K  N  L  K  T  R  V  I  G  C  P  K  T  I  D  G  D  L  K  S  K  E  V  P  T  S  F  G  F  D  T  A  C  K  :  I  Y  A  E  M  I  G  N  V  M  V  D  A  R  S  T  G  K  Y  Y  H   : F  V  R  L  M  G  R  A  A  S  H  I  T  L  E  C  A  L  Q  T  H  P  N  V  T  L  I  G  E  E  :  V  F  A  K  K  L  T  L  K  N  V  T  D  Y  I  A  D  V  V  C  K  R  A  E  S  G  Y  N  Y  G  V  I  L  I  P  E  G  L  I  D  F  I  P  E  :  V  Q  Q  L  I  A  E  L  N  E  I  L  A  H  D  V  V  D  E  A  G  V  W  K  K  K  L  T  P  Q  C  L  E  L  F  E  L  L  P  L  A  I  Q  E  Q  L  L  L  E  R  D  P  H  G  N  V  Q  :  V  A  K  I  E  T  E  K  M  L  I  Q  M  V  E  T  E  L  D  Q  R  K  Q  K  G  A  Y  N  A  Q  F  K  G  Q  S  H  F  F  G :   Y  E  G  R  C  G  L  P  S  N  F  D  S  T  Y  C  Y  A  L  G  Y  G  A  G  S  L  L  Q  S  G  K  T  G  L  I  S  S  :  V  G  N  L  A  A  P  V  E  E  W  T  V  G  G  T  A  L  T  A  L  M  D  V  E  R  R  H   : G  K  F  K  P  V  I  K  K  A  M  V  E  L  E   : G  A  P  F  K  K  F  A  S  K  R  E  E  W  A  L  N  N  R  Y  I  N  P   : G  P  I  Q  F  V  G  P  V  A  N  K  V  N  H  T  L  L  L  E  L  G  V  D  A  *  E  G  G  D  I  *  I  V  V  K  Y  T  C  C  T  M  I  F  S  R  E  N  V  S  T  Y  R  L  C  L  S  C  F  S  A  N  D  L  C  E  T  R  I  L  L  L  T  Y  A  *  L  Q  D  F  *  C  G  I  *  I  I  Y :   K  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62722" stop="62995"/>
                    <exon start="63638" stop="63799"/>
                    <exon start="63890" stop="64011"/>
                    <exon start="64121" stop="64174"/>
                    <exon start="64280" stop="64386"/>
                    <exon start="64509" stop="64614"/>
                    <exon start="65200" stop="65263"/>
                    <exon start="66879" stop="66967"/>
                    <exon start="67501" stop="67632"/>
                    <exon start="67746" stop="67916"/>
                    <exon start="67990" stop="68105"/>
                    <exon start="68216" stop="68327"/>
                    <exon start="68491" stop="68575"/>
                    <exon start="68680" stop="68724"/>
                    <exon start="68840" stop="68908"/>
                    <exon start="69050" stop="69126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1782</number_coding_nucleotides>
                  <number_encoded_amino_acids>594</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPLKSQLVHCYSSLTPILFSAPAISMAAAALSLLNNGELASSVKSPGTGRYAAVYSEVQNSRLDHPLPLPSVLGSPFKVVDGPPSSAAGHPEEIAKLFPSLYGQPSVSLVPDDSGDVAMNQILKIGVVLSGGQAPGGHNVISGIFDYLQTHCKGSTMYGFRGGPAGVMKGKYVGLTPEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNVTLIGEEVFAKKLTLKNVTDYIADVVCKRAESGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDVVDEAGVWKKKLTPQCLELFELLPLAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELDQRKQKGAYNAQFKGQSHFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEEWTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELGVDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="62720" e_stop="62995"/>
            <exon e_start="63638" e_stop="63799"/>
            <exon e_start="63890" e_stop="64011"/>
            <exon e_start="64121" e_stop="64174"/>
            <exon e_start="64280" e_stop="64386"/>
            <exon e_start="64509" e_stop="64614"/>
            <exon e_start="65200" e_stop="65263"/>
            <exon e_start="66879" e_stop="66967"/>
            <exon e_start="67501" e_stop="67632"/>
            <exon e_start="67746" e_stop="67916"/>
            <exon e_start="67990" e_stop="68105"/>
            <exon e_start="68216" e_stop="68327"/>
            <exon e_start="68491" e_stop="68575"/>
            <exon e_start="68680" e_stop="68724"/>
            <exon e_start="68840" e_stop="68908"/>
            <exon e_start="69050" e_stop="69303"/>
            <exon e_start="69593" e_stop="69612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.796" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.976"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62720" e_stop="62995" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.934">
            <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63638" e_stop="63799" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.979">
            <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63890" e_stop="64011" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64121" e_stop="64174" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64280" e_stop="64386" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.873">
            <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64509" e_stop="64614" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65200" e_stop="65263" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.836" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66879" e_stop="66967" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67501" e_stop="67632" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67746" e_stop="67916" e_length="171"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67990" e_stop="68105" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="0.969" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="68216" e_stop="68327" e_length="112"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="68491" e_stop="68575" e_length="85"/>
          </exon>
          <intron i_serial="13" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="68680" e_stop="68724" e_length="45"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="68840" e_stop="68908" e_length="69"/>
          </exon>
          <intron i_serial="15" don_prob="0.998" acc_prob="0.796">
            <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141"/>
          </intron>
          <exon e_serial="16" e_score="0.976">
            <gDNA_exon_boundary e_start="69050" e_stop="69303" e_length="254"/>
          </exon>
          <intron i_serial="16" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69304" i_stop="69592" i_length="289"/>
          </intron>
          <exon e_serial="17" e_score="0.700">
            <gDNA_exon_boundary e_start="69593" e_stop="69612" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62720" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
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              <exon start="67746" stop="67799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64154" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64161" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64310" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64335" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64348" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64514" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64543" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64586" stop="64614"/>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65201" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65230" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67539" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67755" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67856" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68094" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68711" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69303"/>
              <exon start="69593" stop="69612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG : AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG : ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG : GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG : TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG : AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG : ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT : TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG : GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG : GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG : GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG : TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG : GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG : GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG : GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG : GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGA : CAAATTTGAAAAAAGGCAAA</gDNA_template>
            <first_frame> F  G  L  S  S  L  N  L  F  T  A  T  P  H  *  P  P  F  S  F  L  L  R  R  F  Q  W  P  P  P  L  F  L  C  L  T  T  E  S  *  L  L  P  L  S  L  R  V  P  D  D  M  L  P  F  T  V  K  F  K  T  V  V  *  I  T  L  F  L  F  L  L  F  S  E  A  L  S  K  S  L  M  V  L  L  H  L  P  P  V  I  Q  :  R  R  L  Q  S  F  F  L  P  Y  T  D  N  H  L  F  H  W  C  L  M  I  L  G  M  L  R  *  I  K  S  *  K  *  E  W  C  Y  L  E  A  K  L  P  E  D  I  M  L  F  L  E  F  L  :  I  I  C  R  L  I  A  R  E  A  Q  C  M  D  S  G  V  D  Q  L  E  S  *  R  E  S  M  W  G  *  P  R  S  S  F  T  H  T  E  I  R :   V  D  L  I  *  F  A  V  V  G  T  R  L  R  L  Q  S  S :   L  S  K  L  K  R  Q  Q  R  S  S  I  *  M  V  L  S  *  L  V  E  M  T  P  I  Q  M  L  V  F  L  L  R  T  S   : E  V  K  I  *  K  L  G  L  L  D  A  R  K  P  *  M  V  T  *  N  R  K  R  F  P  Q  V  L  A  L  I  R  H  A  R :   Y  M  Q  K  *  L  G  M  *  W  *  M  L  D  Q  Q  E  N  T  I  I  :  L  C  G  S  W  G  V  L  L  H  T  L  L  *  S  V  L  C  K  L  I  Q  T  L  L  *  L  E  K  R :   Y  L  Q  R  N  *  L  L  R  M  L  R  I  T  L  L  M  W  S  A  S  A  Q  S  Q  V  T  I  M  E  L  F  S  F  P  K  D  L  *  I  S  F  L  R :   F  S  N  S  L  R  N  *  M  K  Y  W  H  M  M  S  *  M  K  L  V  F  G  K  R  N  L  L  P  S  A  L  S  S  L  S  C  C  P  *  L  F  R  N  N  C  F  L  R  E  I  H  T  A  M  S  R :   L  R  K  L  K  L  R  K  C  L  F  K  W  L  K  L  S  W  I  R  G  S  R  R  V  H  I  M  L  N  L  K  D  S  P  T  F  L   : V  M  K  E  G  V  A  C  H  P  I  L  I  L  H  T  V  T  R  W  G  M  V  Q  D  H  C  F  K  V  G  R  Q  G  *  Y  H  R :   L  V  I  W  L  L  L  L  K  N  G  R  *  V  E  Q  H  S  L  H  *  W  T  *  R  G  D  M  :  A  S  S  S  Q  *  S  R  R  L  W  L  S  L  K  :  V  L  H  S  R  N  L  L  Q  R  G  K  N  G  L  L  T  T  D  T  L  T  Q  :  V  P  F  N  L  L  V  Q  W  R  I  K  *  T  T  L  Y  F  W  S  W  E  *  M  H  R  R  E  G  I  Y  E  L  L  *  N  T  L  V  V  L  *  F  F  R  G  R  T  *  A  L  I  A  Y  V  *  V  V  F  R  L  M  I  Y  V  K  L  E  S  C  F  *  H  M  L  D  Y  K  I  F  N  V  A  F  D :   K  F  E  K  R  Q  </first_frame>
            <second_frame>  L  A  S  Q  V  S  T  C  S  L  L  L  L  T  N  P  H  S  L  F  C  S  G  D  F  N  G  R  R  R  S  F  F  A  *  Q  R  R  V  S  F  F  R  *  V  S  G  Y  R  T  I  C  C  R  L  Q  *  S  S  K  Q  S  F  R  S  P  S  S  S  S  F  C  S  R  K  P  F  Q  S  R  *  W  S  S  F  I  C  R  R  S  S  R :   G  D  C  K  A  F  S  F  L  I  R  T  T  I  C  F  I  G  A  *  *  F  W  G  C  C  D  E  S  N  L  E  N  R  S  G  V  I  W  R  P  S  S  R  R  T  *  C  Y  F  W  N  F  * :   L  F  A  D  S  L  Q  G  K  H  N  V  W  I  Q  G  W  T  S  W  S  H  E  G  K  V  C  G  V  D  P  G  V  H  L  P  I  Q  K  S   : G  W  I  *  Y  D  L  Q  W  *  G  Q  D  *  D  S  R  A   : V  *  A  S  *  R  D  S  K  E  A  R  S  R  W  S  C  R  N  W  W  R  *  L  Q  Y  K  C  L  S  S  C  *  E  L  Q  :  K  *  K  F  E  N  S  G  Y  W  M  P  E  N  H  R  W  *  L  K  I  E  R  G  S  H  K  F  W  L  *  Y  G  M  Q   : D  I  C  R  N  D  W  E  C  D  G  R  C  S  I  N  R  K  I  L  S  F :   C  A  A  H  G  A  C  C  F  T  H  Y  S  R  V  C  S  A  N  S  S  K  R  Y  F  D  W  R  R   : G  I  C  K  E  T  D  S  *  E  C  Y  G  L  H  C  *  C  G  L  Q  A  R  R  V  R  L  Q  L  W  S  Y  S  H  S  R  R  T  Y  R  F  H  S  *   : G  S  A  T  H  C  G  T  K  *  N  I  G  T  *  C  R  R  *  S  W  C  L  E  K  E  T  Y  S  P  V  P  *  A  L  *  V  V  A  P  S  Y  S  G  T  T  A  S  *  E  R  S  T  R  Q  C  P   : G  C  E  N  *  N  *  E  N  A  Y  S  N  G  *  N  *  V  G  S  E  E  A  E  G  C  I  *  C  S  I  *  R  T  V  P  L  F  W  :  L  *  R  K  V  W  L  A  I  Q  F  *  F  Y  I  L  L  R  V  G  V  W  C  R  I  T  A  S  K  W  E  D  R  V  D  I  I   : G  W  *  F  G  C  S  C  *  R  M  D  G  R  W  N  S  T  H  C  I  D  G  R  R  E  E  T  W :   Q  V  Q  A  S  D  Q  E  G  Y  G  *  A  *  R :   C  S  I  Q  E  I  C  F  K  E  G  R  M  G  S  *  Q  P  I  H  *  P  R :   S  H  S  I  C  W  S  S  G  E  *  S  K  P  H  F  T  S  G  V  G  S  R  C  I  G  G  R  G  Y  M  N  C  C  E  I  H  L  L  Y  Y  D  F  F  E  G  E  R  K  H  L  S  L  M  F  K  L  F  F  G  *  *  S  M  *  N  S  N  L  A  F  N  I  C  L  I  T  R  F  L  M  W  H  L   : T  N  L  K  K  G  K </second_frame>
            <third_frame>   W  P  L  K  S  Q  L  V  H  C  Y  S  S  L  T  P  I  L  F  S  A  P  A  I  S  M  A  A  A  A  L  S  L  L  N  N  G  E  L  A  S  S  V  K  S  P  G  T  G  R  Y  A  A  V  Y  S  E  V  Q  N  S  R  L  D  H  P  L  P  L  P  S  V  L  G  S  P  F  K  V  V  D  G  P  P  S  S  A  A  G  H  P   : E  E  I  A  K  L  F  P  S  L  Y  G  Q  P  S  V  S  L  V  P  D  D  S  G  D  V  A  M  N  Q  I  L  K  I  G  V  V  L  S  G  G  Q  A  P  G  G  H  N  V  I  S  G  I  F   : D  Y  L  Q  T  H  C  K  G  S  T  M  Y  G  F  R  G  G  P  A  G  V  M  K  G  K  Y  V  G  L  T  P  E  F  I  Y  P  Y  R  N  Q  :  G  G  F  D  M  I  C  S  G  R  D  K  I  E  T  P  E  Q  :  F  K  Q  A  E  E  T  A  K  K  L  D  L  D  G  L  V  V  I  G  G  D  D  S  N  T  N  A  C  L  L  A  E  N  F  R :   S  K  N  L  K  T  R  V  I  G  C  P  K  T  I  D  G  D  L  K  S  K  E  V  P  T  S  F  G  F  D  T  A  C  K  :  I  Y  A  E  M  I  G  N  V  M  V  D  A  R  S  T  G  K  Y  Y  H   : F  V  R  L  M  G  R  A  A  S  H  I  T  L  E  C  A  L  Q  T  H  P  N  V  T  L  I  G  E  E  :  V  F  A  K  K  L  T  L  K  N  V  T  D  Y  I  A  D  V  V  C  K  R  A  E  S  G  Y  N  Y  G  V  I  L  I  P  E  G  L  I  D  F  I  P  E  :  V  Q  Q  L  I  A  E  L  N  E  I  L  A  H  D  V  V  D  E  A  G  V  W  K  K  K  L  T  P  Q  C  L  E  L  F  E  L  L  P  L  A  I  Q  E  Q  L  L  L  E  R  D  P  H  G  N  V  Q  :  V  A  K  I  E  T  E  K  M  L  I  Q  M  V  E  T  E  L  D  Q  R  K  Q  K  G  A  Y  N  A  Q  F  K  G  Q  S  H  F  F  G :   Y  E  G  R  C  G  L  P  S  N  F  D  S  T  Y  C  Y  A  L  G  Y  G  A  G  S  L  L  Q  S  G  K  T  G  L  I  S  S  :  V  G  N  L  A  A  P  V  E  E  W  T  V  G  G  T  A  L  T  A  L  M  D  V  E  R  R  H   : G  K  F  K  P  V  I  K  K  A  M  V  E  L  E   : G  A  P  F  K  K  F  A  S  K  R  E  E  W  A  L  N  N  R  Y  I  N  P   : G  P  I  Q  F  V  G  P  V  A  N  K  V  N  H  T  L  L  L  E  L  G  V  D  A  *  E  G  G  D  I  *  I  V  V  K  Y  T  C  C  T  M  I  F  S  R  E  N  V  S  T  Y  R  L  C  L  S  C  F  S  A  N  D  L  C  E  T  R  I  L  L  L  T  Y  A  *  L  Q  D  F  *  C  G  I  *  :  Q  I  *  K  K  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62722" stop="62995"/>
                    <exon start="63638" stop="63799"/>
                    <exon start="63890" stop="64011"/>
                    <exon start="64121" stop="64174"/>
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                    <exon start="65200" stop="65263"/>
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                    <exon start="67501" stop="67632"/>
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                    <exon start="68680" stop="68724"/>
                    <exon start="68840" stop="68908"/>
                    <exon start="69050" stop="69126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1782</number_coding_nucleotides>
                  <number_encoded_amino_acids>594</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPLKSQLVHCYSSLTPILFSAPAISMAAAALSLLNNGELASSVKSPGTGRYAAVYSEVQNSRLDHPLPLPSVLGSPFKVVDGPPSSAAGHPEEIAKLFPSLYGQPSVSLVPDDSGDVAMNQILKIGVVLSGGQAPGGHNVISGIFDYLQTHCKGSTMYGFRGGPAGVMKGKYVGLTPEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNVTLIGEEVFAKKLTLKNVTDYIADVVCKRAESGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDVVDEAGVWKKKLTPQCLELFELLPLAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELDQRKQKGAYNAQFKGQSHFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEEWTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELGVDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
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          </exon_coordinates>
        </AGS_line>
        <SCR_line>
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          <exon-intron don_prob="0.991" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.796" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.727" e_score="0.991"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62720" e_stop="62995" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.934">
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          <intron i_serial="3" don_prob="0.998" acc_prob="0.987">
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          </intron>
          <exon e_serial="4" e_score="1.000">
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          <intron i_serial="9" don_prob="0.993" acc_prob="0.994">
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          </intron>
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          </intron>
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        </exon-intron_info>
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            <referenceDNA id="SGN-E746633" strand="+"/>
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            <referenceDNA id="SGN-E449412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
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              <exon start="64280" stop="64359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="64280" stop="64359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450320" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E481577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399662" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E400253" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E439419" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E439440" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E480674" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
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            </gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="63638" stop="63702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400483" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="64509" stop="64579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="63638" stop="63799"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440550" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="63638" stop="63799"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="64509" stop="64544"/>
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            <referenceDNA id="SGN-E448318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62842" stop="62995"/>
              <exon start="63638" stop="63730"/>
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            <referenceDNA id="SGN-E581726" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="65200" stop="65263"/>
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              <exon start="67501" stop="67559"/>
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            <referenceDNA id="SGN-E698664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62940" stop="62995"/>
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            <referenceDNA id="SGN-E599157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62959" stop="62995"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E400284" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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              <exon start="67746" stop="67862"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E242022" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E240954" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E478987" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E270975" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E271132" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E487623" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E464336" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E306162" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E454691" strand="+"/>
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          <PGS_line>
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              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68698"/>
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            <referenceDNA id="SGN-E707059" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E480209" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E248116" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E589328" strand="+"/>
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          <PGS_line>
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              <exon start="67746" stop="67806"/>
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            <referenceDNA id="SGN-E264489" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E701787" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E580254" strand="+"/>
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          <PGS_line>
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              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69151"/>
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            <referenceDNA id="SGN-E459648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68094" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
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              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69254"/>
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            <referenceDNA id="SGN-E564179" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68556" stop="68575"/>
              <exon start="68680" stop="68724"/>
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              <exon start="69050" stop="69266"/>
              <exon start="69347" stop="69357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275349" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG : AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG : ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG : GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG : TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG : AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG : ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT : TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG : GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG : GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG : GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG : TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG : GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG : GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG : GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG : GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAAC : GTAAATGAAAA</gDNA_template>
            <first_frame> F  G  L  S  S  L  N  L  F  T  A  T  P  H  *  P  P  F  S  F  L  L  R  R  F  Q  W  P  P  P  L  F  L  C  L  T  T  E  S  *  L  L  P  L  S  L  R  V  P  D  D  M  L  P  F  T  V  K  F  K  T  V  V  *  I  T  L  F  L  F  L  L  F  S  E  A  L  S  K  S  L  M  V  L  L  H  L  P  P  V  I  Q  :  R  R  L  Q  S  F  F  L  P  Y  T  D  N  H  L  F  H  W  C  L  M  I  L  G  M  L  R  *  I  K  S  *  K  *  E  W  C  Y  L  E  A  K  L  P  E  D  I  M  L  F  L  E  F  L  :  I  I  C  R  L  I  A  R  E  A  Q  C  M  D  S  G  V  D  Q  L  E  S  *  R  E  S  M  W  G  *  P  R  S  S  F  T  H  T  E  I  R :   V  D  L  I  *  F  A  V  V  G  T  R  L  R  L  Q  S  S :   L  S  K  L  K  R  Q  Q  R  S  S  I  *  M  V  L  S  *  L  V  E  M  T  P  I  Q  M  L  V  F  L  L  R  T  S   : E  V  K  I  *  K  L  G  L  L  D  A  R  K  P  *  M  V  T  *  N  R  K  R  F  P  Q  V  L  A  L  I  R  H  A  R :   Y  M  Q  K  *  L  G  M  *  W  *  M  L  D  Q  Q  E  N  T  I  I  :  L  C  G  S  W  G  V  L  L  H  T  L  L  *  S  V  L  C  K  L  I  Q  T  L  L  *  L  E  K  R :   Y  L  Q  R  N  *  L  L  R  M  L  R  I  T  L  L  M  W  S  A  S  A  Q  S  Q  V  T  I  M  E  L  F  S  F  P  K  D  L  *  I  S  F  L  R :   F  S  N  S  L  R  N  *  M  K  Y  W  H  M  M  S  *  M  K  L  V  F  G  K  R  N  L  L  P  S  A  L  S  S  L  S  C  C  P  *  L  F  R  N  N  C  F  L  R  E  I  H  T  A  M  S  R :   L  R  K  L  K  L  R  K  C  L  F  K  W  L  K  L  S  W  I  R  G  S  R  R  V  H  I  M  L  N  L  K  D  S  P  T  F  L   : V  M  K  E  G  V  A  C  H  P  I  L  I  L  H  T  V  T  R  W  G  M  V  Q  D  H  C  F  K  V  G  R  Q  G  *  Y  H  R :   L  V  I  W  L  L  L  L  K  N  G  R  *  V  E  Q  H  S  L  H  *  W  T  *  R  G  D  M  :  A  S  S  S  Q  *  S  R  R  L  W  L  S  L  K  :  V  L  H  S  R  N  L  L  Q  R  G  K  N  G  L  L  T  T  D  T  L  T  Q  :  V  P  F  N  L  L  V  Q  W  R  I  K  *  T  T  L  Y  F  W  S  W  E  *  M  H  R  R  E  G  I  Y  E  L  L  *  N  T  L  V  V  L  *  F  F  R  G  R  T  *  A  L  I  A  Y  V  *  V  V  F  R  L  M  I  Y  V  K  L  E  S  C  F  *   : R  K  *  K </first_frame>
            <second_frame>  L  A  S  Q  V  S  T  C  S  L  L  L  L  T  N  P  H  S  L  F  C  S  G  D  F  N  G  R  R  R  S  F  F  A  *  Q  R  R  V  S  F  F  R  *  V  S  G  Y  R  T  I  C  C  R  L  Q  *  S  S  K  Q  S  F  R  S  P  S  S  S  S  F  C  S  R  K  P  F  Q  S  R  *  W  S  S  F  I  C  R  R  S  S  R :   G  D  C  K  A  F  S  F  L  I  R  T  T  I  C  F  I  G  A  *  *  F  W  G  C  C  D  E  S  N  L  E  N  R  S  G  V  I  W  R  P  S  S  R  R  T  *  C  Y  F  W  N  F  * :   L  F  A  D  S  L  Q  G  K  H  N  V  W  I  Q  G  W  T  S  W  S  H  E  G  K  V  C  G  V  D  P  G  V  H  L  P  I  Q  K  S   : G  W  I  *  Y  D  L  Q  W  *  G  Q  D  *  D  S  R  A   : V  *  A  S  *  R  D  S  K  E  A  R  S  R  W  S  C  R  N  W  W  R  *  L  Q  Y  K  C  L  S  S  C  *  E  L  Q  :  K  *  K  F  E  N  S  G  Y  W  M  P  E  N  H  R  W  *  L  K  I  E  R  G  S  H  K  F  W  L  *  Y  G  M  Q   : D  I  C  R  N  D  W  E  C  D  G  R  C  S  I  N  R  K  I  L  S  F :   C  A  A  H  G  A  C  C  F  T  H  Y  S  R  V  C  S  A  N  S  S  K  R  Y  F  D  W  R  R   : G  I  C  K  E  T  D  S  *  E  C  Y  G  L  H  C  *  C  G  L  Q  A  R  R  V  R  L  Q  L  W  S  Y  S  H  S  R  R  T  Y  R  F  H  S  *   : G  S  A  T  H  C  G  T  K  *  N  I  G  T  *  C  R  R  *  S  W  C  L  E  K  E  T  Y  S  P  V  P  *  A  L  *  V  V  A  P  S  Y  S  G  T  T  A  S  *  E  R  S  T  R  Q  C  P   : G  C  E  N  *  N  *  E  N  A  Y  S  N  G  *  N  *  V  G  S  E  E  A  E  G  C  I  *  C  S  I  *  R  T  V  P  L  F  W  :  L  *  R  K  V  W  L  A  I  Q  F  *  F  Y  I  L  L  R  V  G  V  W  C  R  I  T  A  S  K  W  E  D  R  V  D  I  I   : G  W  *  F  G  C  S  C  *  R  M  D  G  R  W  N  S  T  H  C  I  D  G  R  R  E  E  T  W :   Q  V  Q  A  S  D  Q  E  G  Y  G  *  A  *  R :   C  S  I  Q  E  I  C  F  K  E  G  R  M  G  S  *  Q  P  I  H  *  P  R :   S  H  S  I  C  W  S  S  G  E  *  S  K  P  H  F  T  S  G  V  G  S  R  C  I  G  G  R  G  Y  M  N  C  C  E  I  H  L  L  Y  Y  D  F  F  E  G  E  R  K  H  L  S  L  M  F  K  L  F  F  G  *  *  S  M  *  N  S  N  L  A  F  N  :  V  N  E   </second_frame>
            <third_frame>   W  P  L  K  S  Q  L  V  H  C  Y  S  S  L  T  P  I  L  F  S  A  P  A  I  S  M  A  A  A  A  L  S  L  L  N  N  G  E  L  A  S  S  V  K  S  P  G  T  G  R  Y  A  A  V  Y  S  E  V  Q  N  S  R  L  D  H  P  L  P  L  P  S  V  L  G  S  P  F  K  V  V  D  G  P  P  S  S  A  A  G  H  P   : E  E  I  A  K  L  F  P  S  L  Y  G  Q  P  S  V  S  L  V  P  D  D  S  G  D  V  A  M  N  Q  I  L  K  I  G  V  V  L  S  G  G  Q  A  P  G  G  H  N  V  I  S  G  I  F   : D  Y  L  Q  T  H  C  K  G  S  T  M  Y  G  F  R  G  G  P  A  G  V  M  K  G  K  Y  V  G  L  T  P  E  F  I  Y  P  Y  R  N  Q  :  G  G  F  D  M  I  C  S  G  R  D  K  I  E  T  P  E  Q  :  F  K  Q  A  E  E  T  A  K  K  L  D  L  D  G  L  V  V  I  G  G  D  D  S  N  T  N  A  C  L  L  A  E  N  F  R :   S  K  N  L  K  T  R  V  I  G  C  P  K  T  I  D  G  D  L  K  S  K  E  V  P  T  S  F  G  F  D  T  A  C  K  :  I  Y  A  E  M  I  G  N  V  M  V  D  A  R  S  T  G  K  Y  Y  H   : F  V  R  L  M  G  R  A  A  S  H  I  T  L  E  C  A  L  Q  T  H  P  N  V  T  L  I  G  E  E  :  V  F  A  K  K  L  T  L  K  N  V  T  D  Y  I  A  D  V  V  C  K  R  A  E  S  G  Y  N  Y  G  V  I  L  I  P  E  G  L  I  D  F  I  P  E  :  V  Q  Q  L  I  A  E  L  N  E  I  L  A  H  D  V  V  D  E  A  G  V  W  K  K  K  L  T  P  Q  C  L  E  L  F  E  L  L  P  L  A  I  Q  E  Q  L  L  L  E  R  D  P  H  G  N  V  Q  :  V  A  K  I  E  T  E  K  M  L  I  Q  M  V  E  T  E  L  D  Q  R  K  Q  K  G  A  Y  N  A  Q  F  K  G  Q  S  H  F  F  G :   Y  E  G  R  C  G  L  P  S  N  F  D  S  T  Y  C  Y  A  L  G  Y  G  A  G  S  L  L  Q  S  G  K  T  G  L  I  S  S  :  V  G  N  L  A  A  P  V  E  E  W  T  V  G  G  T  A  L  T  A  L  M  D  V  E  R  R  H   : G  K  F  K  P  V  I  K  K  A  M  V  E  L  E   : G  A  P  F  K  K  F  A  S  K  R  E  E  W  A  L  N  N  R  Y  I  N  P   : G  P  I  Q  F  V  G  P  V  A  N  K  V  N  H  T  L  L  L  E  L  G  V  D  A  *  E  G  G  D  I  *  I  V  V  K  Y  T  C  C  T  M  I  F  S  R  E  N  V  S  T  Y  R  L  C  L  S  C  F  S  A  N  D  L  C  E  T  R  I  L  L  L  T :   *  M  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62722" stop="62995"/>
                    <exon start="63638" stop="63799"/>
                    <exon start="63890" stop="64011"/>
                    <exon start="64121" stop="64174"/>
                    <exon start="64280" stop="64386"/>
                    <exon start="64509" stop="64614"/>
                    <exon start="65200" stop="65263"/>
                    <exon start="66879" stop="66967"/>
                    <exon start="67501" stop="67632"/>
                    <exon start="67746" stop="67916"/>
                    <exon start="67990" stop="68105"/>
                    <exon start="68216" stop="68327"/>
                    <exon start="68491" stop="68575"/>
                    <exon start="68680" stop="68724"/>
                    <exon start="68840" stop="68908"/>
                    <exon start="69050" stop="69126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1782</number_coding_nucleotides>
                  <number_encoded_amino_acids>594</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPLKSQLVHCYSSLTPILFSAPAISMAAAALSLLNNGELASSVKSPGTGRYAAVYSEVQNSRLDHPLPLPSVLGSPFKVVDGPPSSAAGHPEEIAKLFPSLYGQPSVSLVPDDSGDVAMNQILKIGVVLSGGQAPGGHNVISGIFDYLQTHCKGSTMYGFRGGPAGVMKGKYVGLTPEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNVTLIGEEVFAKKLTLKNVTDYIADVVCKRAESGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDVVDEAGVWKKKLTPQCLELFELLPLAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELDQRKQKGAYNAQFKGQSHFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEEWTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELGVDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="62720" e_stop="62995"/>
            <exon e_start="63638" e_stop="63799"/>
            <exon e_start="63890" e_stop="64011"/>
            <exon e_start="64121" e_stop="64174"/>
            <exon e_start="64280" e_stop="64386"/>
            <exon e_start="64509" e_stop="64614"/>
            <exon e_start="65200" e_stop="65319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62720" e_stop="62995" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.934">
            <gDNA_intron_boundary i_start="62996" i_stop="63637" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63638" e_stop="63799" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.979">
            <gDNA_intron_boundary i_start="63800" i_stop="63889" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63890" e_stop="64011" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="64012" i_stop="64120" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64121" e_stop="64174" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64175" i_stop="64279" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64280" e_stop="64386" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.873">
            <gDNA_intron_boundary i_start="64387" i_stop="64508" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64509" e_stop="64614" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64615" i_stop="65199" i_length="585"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="65200" e_stop="65319" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62720" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62720" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62734" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="63957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62734" stop="62995"/>
              <exon start="63638" stop="63738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62736" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62736" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62736" stop="62995"/>
              <exon start="63638" stop="63768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62736" stop="62995"/>
              <exon start="63638" stop="63699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62738" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62740" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62741" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62741" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62742" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62749" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62750" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="63957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62754" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62757" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62760" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62763" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62763" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62767" stop="62995"/>
              <exon start="63638" stop="63743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62771" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62771" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62771" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62771" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="63957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="63953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="63943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="63924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62773" stop="62995"/>
              <exon start="63638" stop="63702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62775" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62783" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="63971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62793" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="63896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62802" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62842" stop="62995"/>
              <exon start="63638" stop="63730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62913" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62959" stop="62995"/>
              <exon start="63638" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63652" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63682" stop="63799"/>
              <exon start="63890" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63941" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
              <exon start="65200" stop="65242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63957" stop="64011"/>
              <exon start="64121" stop="64174"/>
              <exon start="64280" stop="64386"/>
              <exon start="64509" stop="64614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247125" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGCCTCTCAAGTCTCAACTTGTTCACTGCTACTCCTCACTAACCCCCATTCTCTTTTCTGCTCCGGCGATTTCAATGGCCGCCGCCGCTCTTTCTTTGCTTAACAACGGAGAGTTAGCTTCTTCCGTTAAGTCTCCGGGTACCGGACGATATGCTGCCGTTTACAGTGAAGTTCAAAACAGTCGTTTAGATCACCCTCTTCCTCTTCCTTCTGTTCTCGGAAGCCCTTTCAAAGTCGTTGATGGTCCTCCTTCATCTGCCGCCGGTCATCCAG : AGGAGATTGCAAAGCTTTTTCCTTCCTTATACGGACAACCATCTGTTTCATTGGTGCCTGATGATTCTGGGGATGTTGCGATGAATCAAATCTTGAAAATAGGAGTGGTGTTATCTGGAGGCCAAGCTCCCGGAGGACATAATGTTATTTCTGGAATTTTTG : ATTATTTGCAGACTCATTGCAAGGGAAGCACAATGTATGGATTCAGGGGTGGACCAGCTGGAGTCATGAAGGGAAAGTATGTGGGGTTGACCCCGGAGTTCATTTACCCATACAGAAATCAG : GGTGGATTTGATATGATTTGCAGTGGTAGGGACAAGATTGAGACTCCAGAGCAG : TTTAAGCAAGCTGAAGAGACAGCAAAGAAGCTCGATCTAGATGGTCTTGTCGTAATTGGTGGAGATGACTCCAATACAAATGCTTGTCTTCTTGCTGAGAACTTCAG : AAGTAAAAATTTGAAAACTCGGGTTATTGGATGCCCGAAAACCATAGATGGTGACTTAAAATCGAAAGAGGTTCCCACAAGTTTTGGCTTTGATACGGCATGCAAG : ATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATTGTAAGTTCACTAGCCTTATCATATGGTAGGATCAACTTCATCATAGCACTTCTTAT</gDNA_template>
            <first_frame> F  G  L  S  S  L  N  L  F  T  A  T  P  H  *  P  P  F  S  F  L  L  R  R  F  Q  W  P  P  P  L  F  L  C  L  T  T  E  S  *  L  L  P  L  S  L  R  V  P  D  D  M  L  P  F  T  V  K  F  K  T  V  V  *  I  T  L  F  L  F  L  L  F  S  E  A  L  S  K  S  L  M  V  L  L  H  L  P  P  V  I  Q  :  R  R  L  Q  S  F  F  L  P  Y  T  D  N  H  L  F  H  W  C  L  M  I  L  G  M  L  R  *  I  K  S  *  K  *  E  W  C  Y  L  E  A  K  L  P  E  D  I  M  L  F  L  E  F  L  :  I  I  C  R  L  I  A  R  E  A  Q  C  M  D  S  G  V  D  Q  L  E  S  *  R  E  S  M  W  G  *  P  R  S  S  F  T  H  T  E  I  R :   V  D  L  I  *  F  A  V  V  G  T  R  L  R  L  Q  S  S :   L  S  K  L  K  R  Q  Q  R  S  S  I  *  M  V  L  S  *  L  V  E  M  T  P  I  Q  M  L  V  F  L  L  R  T  S   : E  V  K  I  *  K  L  G  L  L  D  A  R  K  P  *  M  V  T  *  N  R  K  R  F  P  Q  V  L  A  L  I  R  H  A  R :   Y  M  Q  K  *  L  G  M  *  W  *  M  L  D  Q  Q  E  N  T  I  I  V  S  S  L  A  L  S  Y  G  R  I  N  F  I  I  A  L  L   </first_frame>
            <second_frame>  L  A  S  Q  V  S  T  C  S  L  L  L  L  T  N  P  H  S  L  F  C  S  G  D  F  N  G  R  R  R  S  F  F  A  *  Q  R  R  V  S  F  F  R  *  V  S  G  Y  R  T  I  C  C  R  L  Q  *  S  S  K  Q  S  F  R  S  P  S  S  S  S  F  C  S  R  K  P  F  Q  S  R  *  W  S  S  F  I  C  R  R  S  S  R :   G  D  C  K  A  F  S  F  L  I  R  T  T  I  C  F  I  G  A  *  *  F  W  G  C  C  D  E  S  N  L  E  N  R  S  G  V  I  W  R  P  S  S  R  R  T  *  C  Y  F  W  N  F  * :   L  F  A  D  S  L  Q  G  K  H  N  V  W  I  Q  G  W  T  S  W  S  H  E  G  K  V  C  G  V  D  P  G  V  H  L  P  I  Q  K  S   : G  W  I  *  Y  D  L  Q  W  *  G  Q  D  *  D  S  R  A   : V  *  A  S  *  R  D  S  K  E  A  R  S  R  W  S  C  R  N  W  W  R  *  L  Q  Y  K  C  L  S  S  C  *  E  L  Q  :  K  *  K  F  E  N  S  G  Y  W  M  P  E  N  H  R  W  *  L  K  I  E  R  G  S  H  K  F  W  L  *  Y  G  M  Q   : D  I  C  R  N  D  W  E  C  D  G  R  C  S  I  N  R  K  I  L  S  L  *  V  H  *  P  Y  H  M  V  G  S  T  S  S  *  H  F  L  </second_frame>
            <third_frame>   W  P  L  K  S  Q  L  V  H  C  Y  S  S  L  T  P  I  L  F  S  A  P  A  I  S  M  A  A  A  A  L  S  L  L  N  N  G  E  L  A  S  S  V  K  S  P  G  T  G  R  Y  A  A  V  Y  S  E  V  Q  N  S  R  L  D  H  P  L  P  L  P  S  V  L  G  S  P  F  K  V  V  D  G  P  P  S  S  A  A  G  H  P   : E  E  I  A  K  L  F  P  S  L  Y  G  Q  P  S  V  S  L  V  P  D  D  S  G  D  V  A  M  N  Q  I  L  K  I  G  V  V  L  S  G  G  Q  A  P  G  G  H  N  V  I  S  G  I  F   : D  Y  L  Q  T  H  C  K  G  S  T  M  Y  G  F  R  G  G  P  A  G  V  M  K  G  K  Y  V  G  L  T  P  E  F  I  Y  P  Y  R  N  Q  :  G  G  F  D  M  I  C  S  G  R  D  K  I  E  T  P  E  Q  :  F  K  Q  A  E  E  T  A  K  K  L  D  L  D  G  L  V  V  I  G  G  D  D  S  N  T  N  A  C  L  L  A  E  N  F  R :   S  K  N  L  K  T  R  V  I  G  C  P  K  T  I  D  G  D  L  K  S  K  E  V  P  T  S  F  G  F  D  T  A  C  K  :  I  Y  A  E  M  I  G  N  V  M  V  D  A  R  S  T  G  K  Y  Y  H  C  K  F  T  S  L  I  I  W  *  D  Q  L  H  H  S  T  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62722" stop="62995"/>
                    <exon start="63638" stop="63799"/>
                    <exon start="63890" stop="64011"/>
                    <exon start="64121" stop="64174"/>
                    <exon start="64280" stop="64386"/>
                    <exon start="64509" stop="64614"/>
                    <exon start="65200" stop="65292"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPLKSQLVHCYSSLTPILFSAPAISMAAAALSLLNNGELASSVKSPGTGRYAAVYSEVQNSRLDHPLPLPSVLGSPFKVVDGPPSSAAGHPEEIAKLFPSLYGQPSVSLVPDDSGDVAMNQILKIGVVLSGGQAPGGHNVISGIFDYLQTHCKGSTMYGFRGGPAGVMKGKYVGLTPEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKYYHCKFTSLIIW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="65198" e_stop="65263"/>
            <exon e_start="66879" e_stop="66967"/>
            <exon e_start="67501" e_stop="67632"/>
            <exon e_start="67746" e_stop="67916"/>
            <exon e_start="67990" e_stop="68105"/>
            <exon e_start="68216" e_stop="68327"/>
            <exon e_start="68491" e_stop="68575"/>
            <exon e_start="68680" e_stop="68724"/>
            <exon e_start="68840" e_stop="68908"/>
            <exon e_start="69050" e_stop="69328"/>
            <exon e_start="69593" e_stop="69606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.836" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.796" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65198" e_stop="65263" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.836" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65264" i_stop="66878" i_length="1615"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66879" e_stop="66967" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67501" e_stop="67632" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67746" e_stop="67916" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67990" e_stop="68105" e_length="116"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68216" e_stop="68327" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68491" e_stop="68575" e_length="85"/>
          </exon>
          <intron i_serial="7" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68680" e_stop="68724" e_length="45"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="68840" e_stop="68908" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.796">
            <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="69050" e_stop="69328" e_length="279"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69329" i_stop="69592" i_length="264"/>
          </intron>
          <exon e_serial="11" e_score="0.643">
            <gDNA_exon_boundary e_start="69593" e_stop="69606" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65198" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65200" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65201" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65230" stop="65263"/>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67539" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67755" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67856" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67905" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69328"/>
              <exon start="69593" stop="69606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577777" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68094" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="9" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATATATGCAGAAATGATTGGGAATGTGATGGTAGATGCTCGATCAACAGGAAAATACTATCATT : TTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG : GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG : GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG : GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG : TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG : GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG : GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG : GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG : GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAA : CAAATTTGAAAAAA</gDNA_template>
            <first_frame> R  Y  M  Q  K  *  L  G  M  *  W  *  M  L  D  Q  Q  E  N  T  I  I  :  L  C  G  S  W  G  V  L  L  H  T  L  L  *  S  V  L  C  K  L  I  Q  T  L  L  *  L  E  K  R :   Y  L  Q  R  N  *  L  L  R  M  L  R  I  T  L  L  M  W  S  A  S  A  Q  S  Q  V  T  I  M  E  L  F  S  F  P  K  D  L  *  I  S  F  L  R :   F  S  N  S  L  R  N  *  M  K  Y  W  H  M  M  S  *  M  K  L  V  F  G  K  R  N  L  L  P  S  A  L  S  S  L  S  C  C  P  *  L  F  R  N  N  C  F  L  R  E  I  H  T  A  M  S  R :   L  R  K  L  K  L  R  K  C  L  F  K  W  L  K  L  S  W  I  R  G  S  R  R  V  H  I  M  L  N  L  K  D  S  P  T  F  L   : V  M  K  E  G  V  A  C  H  P  I  L  I  L  H  T  V  T  R  W  G  M  V  Q  D  H  C  F  K  V  G  R  Q  G  *  Y  H  R :   L  V  I  W  L  L  L  L  K  N  G  R  *  V  E  Q  H  S  L  H  *  W  T  *  R  G  D  M  :  A  S  S  S  Q  *  S  R  R  L  W  L  S  L  K  :  V  L  H  S  R  N  L  L  Q  R  G  K  N  G  L  L  T  T  D  T  L  T  Q  :  V  P  F  N  L  L  V  Q  W  R  I  K  *  T  T  L  Y  F  W  S  W  E  *  M  H  R  R  E  G  I  Y  E  L  L  *  N  T  L  V  V  L  *  F  F  R  G  R  T  *  A  L  I  A  Y  V  *  V  V  F  R  L  M  I  Y  V  K  L  E  S  C  F  *  H  M  L  D  Y  K  I  F  N  V  A  F  E  *  Y  N  L  L  F  *  K  :  Q  I  *  K   </first_frame>
            <second_frame>  D  I  C  R  N  D  W  E  C  D  G  R  C  S  I  N  R  K  I  L  S  F :   C  A  A  H  G  A  C  C  F  T  H  Y  S  R  V  C  S  A  N  S  S  K  R  Y  F  D  W  R  R   : G  I  C  K  E  T  D  S  *  E  C  Y  G  L  H  C  *  C  G  L  Q  A  R  R  V  R  L  Q  L  W  S  Y  S  H  S  R  R  T  Y  R  F  H  S  *   : G  S  A  T  H  C  G  T  K  *  N  I  G  T  *  C  R  R  *  S  W  C  L  E  K  E  T  Y  S  P  V  P  *  A  L  *  V  V  A  P  S  Y  S  G  T  T  A  S  *  E  R  S  T  R  Q  C  P   : G  C  E  N  *  N  *  E  N  A  Y  S  N  G  *  N  *  V  G  S  E  E  A  E  G  C  I  *  C  S  I  *  R  T  V  P  L  F  W  :  L  *  R  K  V  W  L  A  I  Q  F  *  F  Y  I  L  L  R  V  G  V  W  C  R  I  T  A  S  K  W  E  D  R  V  D  I  I   : G  W  *  F  G  C  S  C  *  R  M  D  G  R  W  N  S  T  H  C  I  D  G  R  R  E  E  T  W :   Q  V  Q  A  S  D  Q  E  G  Y  G  *  A  *  R :   C  S  I  Q  E  I  C  F  K  E  G  R  M  G  S  *  Q  P  I  H  *  P  R :   S  H  S  I  C  W  S  S  G  E  *  S  K  P  H  F  T  S  G  V  G  S  R  C  I  G  G  R  G  Y  M  N  C  C  E  I  H  L  L  Y  Y  D  F  F  E  G  E  R  K  H  L  S  L  M  F  K  L  F  F  G  *  *  S  M  *  N  S  N  L  A  F  N  I  C  L  I  T  R  F  L  M  W  H  L  N  N  I  I  S  C  F  K  N :   K  F  E  K  </second_frame>
            <third_frame>   I  Y  A  E  M  I  G  N  V  M  V  D  A  R  S  T  G  K  Y  Y  H   : F  V  R  L  M  G  R  A  A  S  H  I  T  L  E  C  A  L  Q  T  H  P  N  V  T  L  I  G  E  E  :  V  F  A  K  K  L  T  L  K  N  V  T  D  Y  I  A  D  V  V  C  K  R  A  E  S  G  Y  N  Y  G  V  I  L  I  P  E  G  L  I  D  F  I  P  E  :  V  Q  Q  L  I  A  E  L  N  E  I  L  A  H  D  V  V  D  E  A  G  V  W  K  K  K  L  T  P  Q  C  L  E  L  F  E  L  L  P  L  A  I  Q  E  Q  L  L  L  E  R  D  P  H  G  N  V  Q  :  V  A  K  I  E  T  E  K  M  L  I  Q  M  V  E  T  E  L  D  Q  R  K  Q  K  G  A  Y  N  A  Q  F  K  G  Q  S  H  F  F  G :   Y  E  G  R  C  G  L  P  S  N  F  D  S  T  Y  C  Y  A  L  G  Y  G  A  G  S  L  L  Q  S  G  K  T  G  L  I  S  S  :  V  G  N  L  A  A  P  V  E  E  W  T  V  G  G  T  A  L  T  A  L  M  D  V  E  R  R  H   : G  K  F  K  P  V  I  K  K  A  M  V  E  L  E   : G  A  P  F  K  K  F  A  S  K  R  E  E  W  A  L  N  N  R  Y  I  N  P   : G  P  I  Q  F  V  G  P  V  A  N  K  V  N  H  T  L  L  L  E  L  G  V  D  A  *  E  G  G  D  I  *  I  V  V  K  Y  T  C  C  T  M  I  F  S  R  E  N  V  S  T  Y  R  L  C  L  S  C  F  S  A  N  D  L  C  E  T  R  I  L  L  L  T  Y  A  *  L  Q  D  F  *  C  G  I  *  I  I  *  S  L  V  L  K   : T  N  L  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65200" stop="65263"/>
                    <exon start="66879" stop="66967"/>
                    <exon start="67501" stop="67632"/>
                    <exon start="67746" stop="67916"/>
                    <exon start="67990" stop="68105"/>
                    <exon start="68216" stop="68327"/>
                    <exon start="68491" stop="68575"/>
                    <exon start="68680" stop="68724"/>
                    <exon start="68840" stop="68908"/>
                    <exon start="69050" stop="69126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>957</number_coding_nucleotides>
                  <number_encoded_amino_acids>319</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYAEMIGNVMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNVTLIGEEVFAKKLTLKNVTDYIADVVCKRAESGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDVVDEAGVWKKKLTPQCLELFELLPLAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELDQRKQKGAYNAQFKGQSHFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEEWTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELGVDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="66802" e_stop="66967"/>
            <exon e_start="67501" e_stop="67632"/>
            <exon e_start="67746" e_stop="67916"/>
            <exon e_start="67990" e_stop="68105"/>
            <exon e_start="68216" e_stop="68327"/>
            <exon e_start="68491" e_stop="68575"/>
            <exon e_start="68680" e_stop="68724"/>
            <exon e_start="68840" e_stop="68908"/>
            <exon e_start="69050" e_stop="69328"/>
            <exon e_start="69593" e_stop="69606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.796" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66802" e_stop="66967" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66968" i_stop="67500" i_length="533"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67501" e_stop="67632" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67633" i_stop="67745" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67746" e_stop="67916" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67917" i_stop="67989" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67990" e_stop="68105" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68216" e_stop="68327" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68491" e_stop="68575" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68680" e_stop="68724" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68840" e_stop="68908" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.796">
            <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69050" e_stop="69328" e_length="279"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69329" i_stop="69592" i_length="264"/>
          </intron>
          <exon e_serial="10" e_score="0.643">
            <gDNA_exon_boundary e_start="69593" e_stop="69606" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66802" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66879" stop="66967"/>
              <exon start="67501" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67539" stop="67632"/>
              <exon start="67746" stop="67916"/>
              <exon start="67990" stop="68073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67755" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67856" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67905" stop="67916"/>
              <exon start="67990" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69328"/>
              <exon start="69593" stop="69606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577777" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68094" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="10" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTATTATCTGCTCAGTTCTCTATTTGCTTTGCATACATCTGAAATATCATAACCTTGTCTGTTAACTCATTACAGTTGTGCGGCTCATGGGGCGTGCTGCTTCACACATTACTCTAGAGTGTGCTCTGCAAACTCATCCAAACGTTACTTTGATTGGAGAAGAG : GTATTTGCAAAGAAACTGACTCTTAAGAATGTTACGGATTACATTGCTGATGTGGTCTGCAAGCGCGCAGAGTCAGGTTACAATTATGGAGTTATTCTCATTCCCGAAGGACTTATAGATTTCATTCCTGAG : GTTCAGCAACTCATTGCGGAACTAAATGAAATATTGGCACATGATGTCGTAGATGAAGCTGGTGTTTGGAAAAAGAAACTTACTCCCCAGTGCCTTGAGCTCTTTGAGTTGTTGCCCCTAGCTATTCAGGAACAACTGCTTCTTGAGAGAGATCCACACGGCAATGTCCAG : GTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG : TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG : GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG : GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG : GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG : GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAA : CAAATTTGAAAAAA</gDNA_template>
            <first_frame> N  Y  Y  L  L  S  S  L  F  A  L  H  T  S  E  I  S  *  P  C  L  L  T  H  Y  S  C  A  A  H  G  A  C  C  F  T  H  Y  S  R  V  C  S  A  N  S  S  K  R  Y  F  D  W  R  R   : G  I  C  K  E  T  D  S  *  E  C  Y  G  L  H  C  *  C  G  L  Q  A  R  R  V  R  L  Q  L  W  S  Y  S  H  S  R  R  T  Y  R  F  H  S  *   : G  S  A  T  H  C  G  T  K  *  N  I  G  T  *  C  R  R  *  S  W  C  L  E  K  E  T  Y  S  P  V  P  *  A  L  *  V  V  A  P  S  Y  S  G  T  T  A  S  *  E  R  S  T  R  Q  C  P   : G  C  E  N  *  N  *  E  N  A  Y  S  N  G  *  N  *  V  G  S  E  E  A  E  G  C  I  *  C  S  I  *  R  T  V  P  L  F  W  :  L  *  R  K  V  W  L  A  I  Q  F  *  F  Y  I  L  L  R  V  G  V  W  C  R  I  T  A  S  K  W  E  D  R  V  D  I  I   : G  W  *  F  G  C  S  C  *  R  M  D  G  R  W  N  S  T  H  C  I  D  G  R  R  E  E  T  W :   Q  V  Q  A  S  D  Q  E  G  Y  G  *  A  *  R :   C  S  I  Q  E  I  C  F  K  E  G  R  M  G  S  *  Q  P  I  H  *  P  R :   S  H  S  I  C  W  S  S  G  E  *  S  K  P  H  F  T  S  G  V  G  S  R  C  I  G  G  R  G  Y  M  N  C  C  E  I  H  L  L  Y  Y  D  F  F  E  G  E  R  K  H  L  S  L  M  F  K  L  F  F  G  *  *  S  M  *  N  S  N  L  A  F  N  I  C  L  I  T  R  F  L  M  W  H  L  N  N  I  I  S  C  F  K  N :   K  F  E  K  </first_frame>
            <second_frame>  I  I  I  C  S  V  L  Y  L  L  C  I  H  L  K  Y  H  N  L  V  C  *  L  I  T  V  V  R  L  M  G  R  A  A  S  H  I  T  L  E  C  A  L  Q  T  H  P  N  V  T  L  I  G  E  E  :  V  F  A  K  K  L  T  L  K  N  V  T  D  Y  I  A  D  V  V  C  K  R  A  E  S  G  Y  N  Y  G  V  I  L  I  P  E  G  L  I  D  F  I  P  E  :  V  Q  Q  L  I  A  E  L  N  E  I  L  A  H  D  V  V  D  E  A  G  V  W  K  K  K  L  T  P  Q  C  L  E  L  F  E  L  L  P  L  A  I  Q  E  Q  L  L  L  E  R  D  P  H  G  N  V  Q  :  V  A  K  I  E  T  E  K  M  L  I  Q  M  V  E  T  E  L  D  Q  R  K  Q  K  G  A  Y  N  A  Q  F  K  G  Q  S  H  F  F  G :   Y  E  G  R  C  G  L  P  S  N  F  D  S  T  Y  C  Y  A  L  G  Y  G  A  G  S  L  L  Q  S  G  K  T  G  L  I  S  S  :  V  G  N  L  A  A  P  V  E  E  W  T  V  G  G  T  A  L  T  A  L  M  D  V  E  R  R  H   : G  K  F  K  P  V  I  K  K  A  M  V  E  L  E   : G  A  P  F  K  K  F  A  S  K  R  E  E  W  A  L  N  N  R  Y  I  N  P   : G  P  I  Q  F  V  G  P  V  A  N  K  V  N  H  T  L  L  L  E  L  G  V  D  A  *  E  G  G  D  I  *  I  V  V  K  Y  T  C  C  T  M  I  F  S  R  E  N  V  S  T  Y  R  L  C  L  S  C  F  S  A  N  D  L  C  E  T  R  I  L  L  L  T  Y  A  *  L  Q  D  F  *  C  G  I  *  I  I  *  S  L  V  L  K   : T  N  L  K  K </second_frame>
            <third_frame>   L  L  S  A  Q  F  S  I  C  F  A  Y  I  *  N  I  I  T  L  S  V  N  S  L  Q  L  C  G  S  W  G  V  L  L  H  T  L  L  *  S  V  L  C  K  L  I  Q  T  L  L  *  L  E  K  R :   Y  L  Q  R  N  *  L  L  R  M  L  R  I  T  L  L  M  W  S  A  S  A  Q  S  Q  V  T  I  M  E  L  F  S  F  P  K  D  L  *  I  S  F  L  R :   F  S  N  S  L  R  N  *  M  K  Y  W  H  M  M  S  *  M  K  L  V  F  G  K  R  N  L  L  P  S  A  L  S  S  L  S  C  C  P  *  L  F  R  N  N  C  F  L  R  E  I  H  T  A  M  S  R :   L  R  K  L  K  L  R  K  C  L  F  K  W  L  K  L  S  W  I  R  G  S  R  R  V  H  I  M  L  N  L  K  D  S  P  T  F  L   : V  M  K  E  G  V  A  C  H  P  I  L  I  L  H  T  V  T  R  W  G  M  V  Q  D  H  C  F  K  V  G  R  Q  G  *  Y  H  R :   L  V  I  W  L  L  L  L  K  N  G  R  *  V  E  Q  H  S  L  H  *  W  T  *  R  G  D  M  :  A  S  S  S  Q  *  S  R  R  L  W  L  S  L  K  :  V  L  H  S  R  N  L  L  Q  R  G  K  N  G  L  L  T  T  D  T  L  T  Q  :  V  P  F  N  L  L  V  Q  W  R  I  K  *  T  T  L  Y  F  W  S  W  E  *  M  H  R  R  E  G  I  Y  E  L  L  *  N  T  L  V  V  L  *  F  F  R  G  R  T  *  A  L  I  A  Y  V  *  V  V  F  R  L  M  I  Y  V  K  L  E  S  C  F  *  H  M  L  D  Y  K  I  F  N  V  A  F  E  *  Y  N  L  L  F  *  K  :  Q  I  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="10" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66869" stop="66967"/>
                    <exon start="67501" stop="67632"/>
                    <exon start="67746" stop="67916"/>
                    <exon start="67990" stop="68105"/>
                    <exon start="68216" stop="68327"/>
                    <exon start="68491" stop="68575"/>
                    <exon start="68680" stop="68724"/>
                    <exon start="68840" stop="68908"/>
                    <exon start="69050" stop="69126"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LITVVRLMGRAASHITLECALQTHPNVTLIGEEVFAKKLTLKNVTDYIADVVCKRAESGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDVVDEAGVWKKKLTPQCLELFELLPLAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELDQRKQKGAYNAQFKGQSHFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEEWTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELGVDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="11">
          <exon_coordinates>
            <exon e_start="67989" e_stop="68105"/>
            <exon e_start="68216" e_stop="68327"/>
            <exon e_start="68491" e_stop="68575"/>
            <exon e_start="68680" e_stop="68724"/>
            <exon e_start="68840" e_stop="68908"/>
            <exon e_start="69050" e_stop="69392"/>
            <exon e_start="69593" e_stop="69613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.796" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.971"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67989" e_stop="68105" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68106" i_stop="68215" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68216" e_stop="68327" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68328" i_stop="68490" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68491" e_stop="68575" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68576" i_stop="68679" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68680" e_stop="68724" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="68725" i_stop="68839" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68840" e_stop="68908" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.796">
            <gDNA_intron_boundary i_start="68909" i_stop="69049" i_length="141"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="69050" e_stop="69392" e_length="343"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69393" i_stop="69592" i_length="200"/>
          </intron>
          <exon e_serial="7" e_score="0.571">
            <gDNA_exon_boundary e_start="69593" e_stop="69613" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67989" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68094" stop="68105"/>
              <exon start="68216" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68272" stop="68327"/>
              <exon start="68491" stop="68575"/>
              <exon start="68680" stop="68724"/>
              <exon start="68840" stop="68908"/>
              <exon start="69050" stop="69392"/>
              <exon start="69593" stop="69613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369145" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="11" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGCGAAAATTGAAACTGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGATCAGAGGAAGCAGAAGGGTGCATATAATGCTCAATTTAAAGGACAGTCCCACTTTTTTGG : TTATGAAGGAAGGTGTGGCTTGCCATCCAATTTTGATTCTACATACTGTTACGCGTTGGGGTATGGTGCAGGATCACTGCTTCAAAGTGGGAAGACAGGGTTGATATCATCG : GTTGGTAATTTGGCTGCTCCTGTTGAAGAATGGACGGTAGGTGGAACAGCACTCACTGCATTGATGGACGTAGAGAGGAGACATG : GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTTGAGCTTGAAG : GTGCTCCATTCAAGAAATTTGCTTCAAAGAGGGAAGAATGGGCTCTTAACAACCGATACATTAACCCAG : GTCCCATTCAATTTGTTGGTCCAGTGGCGAATAAAGTAAACCACACTTTACTTCTGGAGTTGGGAGTAGATGCATAGGAGGGAGGGGATATATGAATTGTTGTGAAATACACTTGTTGTACTATGATTTTTTCGAGGGAGAACGTAAGCACTTATCGCTTATGTTTAAGTTGTTTTTCGGCTAATGATCTATGTGAAACTCGAATCTTGCTTTTAACATATGCTTGATTACAAGATTTTTAATGTGGCATTTGAATAATATAATCTCTTGTTTTAAAAATATTCTCTTCTTATGAAGGTAAATGAAAAAAAATACATAAGTAGAGCCTTTGCATATTATTACT : CAAATTTGAAAAAAGGCAAAG</gDNA_template>
            <first_frame> G  C  E  N  *  N  *  E  N  A  Y  S  N  G  *  N  *  V  G  S  E  E  A  E  G  C  I  *  C  S  I  *  R  T  V  P  L  F  W  :  L  *  R  K  V  W  L  A  I  Q  F  *  F  Y  I  L  L  R  V  G  V  W  C  R  I  T  A  S  K  W  E  D  R  V  D  I  I   : G  W  *  F  G  C  S  C  *  R  M  D  G  R  W  N  S  T  H  C  I  D  G  R  R  E  E  T  W :   Q  V  Q  A  S  D  Q  E  G  Y  G  *  A  *  R :   C  S  I  Q  E  I  C  F  K  E  G  R  M  G  S  *  Q  P  I  H  *  P  R :   S  H  S  I  C  W  S  S  G  E  *  S  K  P  H  F  T  S  G  V  G  S  R  C  I  G  G  R  G  Y  M  N  C  C  E  I  H  L  L  Y  Y  D  F  F  E  G  E  R  K  H  L  S  L  M  F  K  L  F  F  G  *  *  S  M  *  N  S  N  L  A  F  N  I  C  L  I  T  R  F  L  M  W  H  L  N  N  I  I  S  C  F  K  N  I  L  F  L  *  R  *  M  K  K  N  T  *  V  E  P  L  H  I  I  T  :  Q  I  *  K  K  A  K </first_frame>
            <second_frame>  V  A  K  I  E  T  E  K  M  L  I  Q  M  V  E  T  E  L  D  Q  R  K  Q  K  G  A  Y  N  A  Q  F  K  G  Q  S  H  F  F  G :   Y  E  G  R  C  G  L  P  S  N  F  D  S  T  Y  C  Y  A  L  G  Y  G  A  G  S  L  L  Q  S  G  K  T  G  L  I  S  S  :  V  G  N  L  A  A  P  V  E  E  W  T  V  G  G  T  A  L  T  A  L  M  D  V  E  R  R  H   : G  K  F  K  P  V  I  K  K  A  M  V  E  L  E   : G  A  P  F  K  K  F  A  S  K  R  E  E  W  A  L  N  N  R  Y  I  N  P   : G  P  I  Q  F  V  G  P  V  A  N  K  V  N  H  T  L  L  L  E  L  G  V  D  A  *  E  G  G  D  I  *  I  V  V  K  Y  T  C  C  T  M  I  F  S  R  E  N  V  S  T  Y  R  L  C  L  S  C  F  S  A  N  D  L  C  E  T  R  I  L  L  L  T  Y  A  *  L  Q  D  F  *  C  G  I  *  I  I  *  S  L  V  L  K  I  F  S  S  Y  E  G  K  *  K  K  I  H  K  *  S  L  C  I  L  L  L :   K  F  E  K  R  Q   </second_frame>
            <third_frame>   L  R  K  L  K  L  R  K  C  L  F  K  W  L  K  L  S  W  I  R  G  S  R  R  V  H  I  M  L  N  L  K  D  S  P  T  F  L   : V  M  K  E  G  V  A  C  H  P  I  L  I  L  H  T  V  T  R  W  G  M  V  Q  D  H  C  F  K  V  G  R  Q  G  *  Y  H  R :   L  V  I  W  L  L  L  L  K  N  G  R  *  V  E  Q  H  S  L  H  *  W  T  *  R  G  D  M  :  A  S  S  S  Q  *  S  R  R  L  W  L  S  L  K  :  V  L  H  S  R  N  L  L  Q  R  G  K  N  G  L  L  T  T  D  T  L  T  Q  :  V  P  F  N  L  L  V  Q  W  R  I  K  *  T  T  L  Y  F  W  S  W  E  *  M  H  R  R  E  G  I  Y  E  L  L  *  N  T  L  V  V  L  *  F  F  R  G  R  T  *  A  L  I  A  Y  V  *  V  V  F  R  L  M  I  Y  V  K  L  E  S  C  F  *  H  M  L  D  Y  K  I  F  N  V  A  F  E  *  Y  N  L  L  F  *  K  Y  S  L  L  M  K  V  N  E  K  K  Y  I  S  R  A  F  A  Y  Y  Y   : S  N  L  K  K  G  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="11" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67990" stop="68105"/>
                    <exon start="68216" stop="68327"/>
                    <exon start="68491" stop="68575"/>
                    <exon start="68680" stop="68724"/>
                    <exon start="68840" stop="68908"/>
                    <exon start="69050" stop="69126"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAKIETEKMLIQMVETELDQRKQKGAYNAQFKGQSHFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEEWTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELGVDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="80993" PGL_stop="82418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80993" e_stop="82418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80993" e_stop="82418" e_length="1426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80993" stop="81438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81056" stop="81726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81056" stop="81615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81061" stop="81614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81066" stop="81584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81094" stop="81912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81117" stop="81948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81164" stop="81886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81166" stop="81565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81205" stop="81974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81689" stop="82244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81821" stop="82418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369820" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAACTCAACCAATCTTATTGACAAATTTCATGTCTCCCTCTATTTATTATTCGTAGGGTCTTTCTCTTCCGTTCCTTCTTTTTCTTTCCTCGTAAGAACACAAAGGAGAAAGAAGAAAAGAGTTTCTTTTTTTTCTTCTCTCTGCAGAAACAAAGAATGGAAGACCCTGAAAGGCTTACATCATCTAACAGTCAAACAACCACGATTAGCTCCGACTCTATCCATTCACCCGAATTCGAATTTTGGATGGTCCGAAACCCATCTTTTCCTCAACCCAATCAGCTCTCTGCCGATGAGCTCTTCTCCCATGGCGTCCTACTCCCATTAGACCTCCTTCAAAATGAAACAAATGTTATTTCGCCTGAACCATCCGGGTCGGGCCGACCCGAAACTGAATCTGGGGTTGAGCCTTCTGCTGCGATAGTCAACTCGTCCGGCGGAGGAGCTTCTTTCACCTCCTCGAAGCGATGGAAGGATATATTCAAGAAAACTGAGAAGAAAGATAGTAATGAGGAGAATTGTAGAGAGAAGAAAAAGGAGAAGAAGAAAGAGAAAAAACTGGTTGGGGGAAGCAATGGCGTGACTGGGGCGGAGTTGAACATTAACATTTGGCCCTTTTCGAGGAGTAGATCCGCCGGAAACGGAGGAAGTAGGCCTCGGGTTACGGGTGGATCCGGATTGGCGACGCGAAAGGTCAGTAGTGCTCCGTGTTCCCGGAGCAACTCCGCCGGTGAATCCAAGTCACGGAAATGGCCCAGTAGTCCCAGTCGTGGTGGGGTTCATTTGGGCCGGAGCAGCCCAGTTTGGCAGGTACGACGGAGCTCTATCAACCCAGGATCCGGTACCCGGAGCTCCGACAACCTCGTCAAAACTACTGAAAAAGCCATCAGAAAAGAAGCCCCCCAGAAAGAAAGCAGCACCAGAAAGGTAGTAACTAAAAAAGAAGGCGTTGAAGTCCGCCGGAAATGGTCGTCAGCGGCGGCCGGAGGTGGGCCTAAAACTAGAGTCTTAAACTTGAATGTCCCTATGTGCATTGGTTACAGGAATCAGTTAGGTTGCAGAAGTGATCAAAATAGTGCCATCCATATCGCCGCCGCCACCGGAGTCGGTGATGATCAGAATGGTAGCAGCACAGTCACCGGTGAAGGGGTACGTGGCAGTAACTTATTTAATCTCAAAAGCCTATTTACTAAAAAAGTATATTAAATTAAATAGTGGCAAATCCAAAGTAATTACACACTTTTTGAGTTATATGTTAGTGTATCTATCATTATCCTTTTCTATATTCTCCTATGTAACTTTTTCGTAATGTAAAGTCCTAACTTTTGACGTTTGCAATGTAATATTTGGCCCTCAGTTTGGTCAACATACTGCCCTATTGCTATTCAAGTTGAAGTGTTTGTATAATTTTGCCTACTTTAGT</gDNA_template>
            <first_frame> E  K  L  N  Q  S  Y  *  Q  I  S  C  L  P  L  F  I  I  R  R  V  F  L  F  R  S  F  F  F  F  P  R  K  N  T  K  E  K  E  E  K  S  F  F  F  F  F  S  L  Q  K  Q  R  M  E  D  P  E  R  L  T  S  S  N  S  Q  T  T  T  I  S  S  D  S  I  H  S  P  E  F  E  F  W  M  V  R  N  P  S  F  P  Q  P  N  Q  L  S  A  D  E  L  F  S  H  G  V  L  L  P  L  D  L  L  Q  N  E  T  N  V  I  S  P  E  P  S  G  S  G  R  P  E  T  E  S  G  V  E  P  S  A  A  I  V  N  S  S  G  G  G  A  S  F  T  S  S  K  R  W  K  D  I  F  K  K  T  E  K  K  D  S  N  E  E  N  C  R  E  K  K  K  E  K  K  K  E  K  K  L  V  G  G  S  N  G  V  T  G  A  E  L  N  I  N  I  W  P  F  S  R  S  R  S  A  G  N  G  G  S  R  P  R  V  T  G  G  S  G  L  A  T  R  K  V  S  S  A  P  C  S  R  S  N  S  A  G  E  S  K  S  R  K  W  P  S  S  P  S  R  G  G  V  H  L  G  R  S  S  P  V  W  Q  V  R  R  S  S  I  N  P  G  S  G  T  R  S  S  D  N  L  V  K  T  T  E  K  A  I  R  K  E  A  P  Q  K  E  S  S  T  R  K  V  V  T  K  K  E  G  V  E  V  R  R  K  W  S  S  A  A  A  G  G  G  P  K  T  R  V  L  N  L  N  V  P  M  C  I  G  Y  R  N  Q  L  G  C  R  S  D  Q  N  S  A  I  H  I  A  A  A  T  G  V  G  D  D  Q  N  G  S  S  T  V  T  G  E  G  V  R  G  S  N  L  F  N  L  K  S  L  F  T  K  K  V  Y  *  I  K  *  W  Q  I  Q  S  N  Y  T  L  F  E  L  Y  V  S  V  S  I  I  I  L  F  Y  I  L  L  C  N  F  F  V  M  *  S  P  N  F  *  R  L  Q  C  N  I  W  P  S  V  W  S  T  Y  C  P  I  A  I  Q  V  E  V  F  V  *  F  C  L  L  *  </first_frame>
            <second_frame>  K  N  S  T  N  L  I  D  K  F  H  V  S  L  Y  L  L  F  V  G  S  F  S  S  V  P  S  F  S  F  L  V  R  T  Q  R  R  K  K  K  R  V  S  F  F  S  S  L  C  R  N  K  E  W  K  T  L  K  G  L  H  H  L  T  V  K  Q  P  R  L  A  P  T  L  S  I  H  P  N  S  N  F  G  W  S  E  T  H  L  F  L  N  P  I  S  S  L  P  M  S  S  S  P  M  A  S  Y  S  H  *  T  S  F  K  M  K  Q  M  L  F  R  L  N  H  P  G  R  A  D  P  K  L  N  L  G  L  S  L  L  L  R  *  S  T  R  P  A  E  E  L  L  S  P  P  R  S  D  G  R  I  Y  S  R  K  L  R  R  K  I  V  M  R  R  I  V  E  R  R  K  R  R  R  R  K  R  K  N  W  L  G  E  A  M  A  *  L  G  R  S  *  T  L  T  F  G  P  F  R  G  V  D  P  P  E  T  E  E  V  G  L  G  L  R  V  D  P  D  W  R  R  E  R  S  V  V  L  R  V  P  G  A  T  P  P  V  N  P  S  H  G  N  G  P  V  V  P  V  V  V  G  F  I  W  A  G  A  A  Q  F  G  R  Y  D  G  A  L  S  T  Q  D  P  V  P  G  A  P  T  T  S  S  K  L  L  K  K  P  S  E  K  K  P  P  R  K  K  A  A  P  E  R  *  *  L  K  K  K  A  L  K  S  A  G  N  G  R  Q  R  R  P  E  V  G  L  K  L  E  S  *  T  *  M  S  L  C  A  L  V  T  G  I  S  *  V  A  E  V  I  K  I  V  P  S  I  S  P  P  P  P  E  S  V  M  I  R  M  V  A  A  Q  S  P  V  K  G  Y  V  A  V  T  Y  L  I  S  K  A  Y  L  L  K  K  Y  I  K  L  N  S  G  K  S  K  V  I  T  H  F  L  S  Y  M  L  V  Y  L  S  L  S  F  S  I  F  S  Y  V  T  F  S  *  C  K  V  L  T  F  D  V  C  N  V  I  F  G  P  Q  F  G  Q  H  T  A  L  L  L  F  K  L  K  C  L  Y  N  F  A  Y  F  S </second_frame>
            <third_frame>   K  T  Q  P  I  L  L  T  N  F  M  S  P  S  I  Y  Y  S  *  G  L  S  L  P  F  L  L  F  L  S  S  *  E  H  K  G  E  R  R  K  E  F  L  F  F  L  L  S  A  E  T  K  N  G  R  P  *  K  A  Y  I  I  *  Q  S  N  N  H  D  *  L  R  L  Y  P  F  T  R  I  R  I  L  D  G  P  K  P  I  F  S  S  T  Q  S  A  L  C  R  *  A  L  L  P  W  R  P  T  P  I  R  P  P  S  K  *  N  K  C  Y  F  A  *  T  I  R  V  G  P  T  R  N  *  I  W  G  *  A  F  C  C  D  S  Q  L  V  R  R  R  S  F  F  H  L  L  E  A  M  E  G  Y  I  Q  E  N  *  E  E  R  *  *  *  G  E  L  *  R  E  E  K  G  E  E  E  R  E  K  T  G  W  G  K  Q  W  R  D  W  G  G  V  E  H  *  H  L  A  L  F  E  E  *  I  R  R  K  R  R  K  *  A  S  G  Y  G  W  I  R  I  G  D  A  K  G  Q  *  C  S  V  F  P  E  Q  L  R  R  *  I  Q  V  T  E  M  A  Q  *  S  Q  S  W  W  G  S  F  G  P  E  Q  P  S  L  A  G  T  T  E  L  Y  Q  P  R  I  R  Y  P  E  L  R  Q  P  R  Q  N  Y  *  K  S  H  Q  K  R  S  P  P  E  R  K  Q  H  Q  K  G  S  N  *  K  R  R  R  *  S  P  P  E  M  V  V  S  G  G  R  R  W  A  *  N  *  S  L  K  L  E  C  P  Y  V  H  W  L  Q  E  S  V  R  L  Q  K  *  S  K  *  C  H  P  Y  R  R  R  H  R  S  R  *  *  S  E  W  *  Q  H  S  H  R  *  R  G  T  W  Q  *  L  I  *  S  Q  K  P  I  Y  *  K  S  I  L  N  *  I  V  A  N  P  K  *  L  H  T  F  *  V  I  C  *  C  I  Y  H  Y  P  F  L  Y  S  P  M  *  L  F  R  N  V  K  S  *  L  L  T  F  A  M  *  Y  L  A  L  S  L  V  N  I  L  P  Y  C  Y  S  S  *  S  V  C  I  I  L  P  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81017" stop="82201"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QISCLPLFIIRRVFLFRSFFFFPRKNTKEKEEKSFFFFFSLQKQRMEDPERLTSSNSQTTTISSDSIHSPEFEFWMVRNPSFPQPNQLSADELFSHGVLLPLDLLQNETNVISPEPSGSGRPETESGVEPSAAIVNSSGGGASFTSSKRWKDIFKKTEKKDSNEENCREKKKEKKKEKKLVGGSNGVTGAELNINIWPFSRSRSAGNGGSRPRVTGGSGLATRKVSSAPCSRSNSAGESKSRKWPSSPSRGGVHLGRSSPVWQVRRSSINPGSGTRSSDNLVKTTEKAIRKEAPQKESSTRKVVTKKEGVEVRRKWSSAAAGGGPKTRVLNLNVPMCIGYRNQLGCRSDQNSAIHIAAATGVGDDQNGSSTVTGEGVRGSNLFNLKSLFTKKVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="82398" PGL_stop="81557"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82398" e_stop="81557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="82398" e_stop="81557" e_length="842"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82398" stop="81557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727143" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAACACTTCAACTTGAATAGCAATAGGGCAGTATGTTGACCAAACTGAGGGCCAAATATTACATTGCAAACGTCAAAAGTTAGGACTTTACATTACGAAAAAGTTACATAGGAGAATATAGAAAAGGATAATGATAGATACACTAACATATAACTCAAAAAGTGTGTAATTACTTTGGATTTGCCACTATTTAATTTAATATACTTTTTTAGTAAATAGGCTTTTGAGATTAAATAAGTTACTGCCACGTACCCCTTCACCGGTGACTGTGCTGCTACCATTCTGATCATCACCGACTCCGGTGGCGGCGGCGATATGGATGGCACTATTTTGATCACTTCTGCAACCTAACTGATTCCTGTAACCAATGCACATAGGGACATTCAAGTTTAAGACTCTAGTTTTAGGCCCACCTCCGGCCGCCGCTGACGACCATTTCCGGCGGACTTCAACGCCTTCTTTTTTAGTTACTACCTTTCTGGTGCTGCTTTCTTTCTGGGGGGCTTCTTTTCTGATGGCTTTTTCAGTAGTTTTGACGAGGTTGTCGGAGCTCCGGGTACCGGATCCTGGGTTGATAGAGCTCCGTCGTACCTGCCAAACTGGGCTGCTCCGGCCCAAATGAACCCCACCACGACTGGGACTACTGGGCCATTTCCGTGACTTGGATTCACCGGCGGAGTTGCTCCGGGAACACGGAGCACTACTGACCTTTCGCGTCGCCAATCCGGATCCACCCGTAACCCGAGGCCTACTTCCTCCGTTTCCGGCGGATCTACTCCTCGAAAAGGGCCAAATGTTAATGTTCAACTCCGCCCCAGTCACGCCATTGCTTCCCCCAAC</gDNA_template>
            <first_frame> T  N  T  S  T  *  I  A  I  G  Q  Y  V  D  Q  T  E  G  Q  I  L  H  C  K  R  Q  K  L  G  L  Y  I  T  K  K  L  H  R  R  I  *  K  R  I  M  I  D  T  L  T  Y  N  S  K  S  V  *  L  L  W  I  C  H  Y  L  I  *  Y  T  F  L  V  N  R  L  L  R  L  N  K  L  L  P  R  T  P  S  P  V  T  V  L  L  P  F  *  S  S  P  T  P  V  A  A  A  I  W  M  A  L  F  *  S  L  L  Q  P  N  *  F  L  *  P  M  H  I  G  T  F  K  F  K  T  L  V  L  G  P  P  P  A  A  A  D  D  H  F  R  R  T  S  T  P  S  F  L  V  T  T  F  L  V  L  L  S  F  W  G  A  S  F  L  M  A  F  S  V  V  L  T  R  L  S  E  L  R  V  P  D  P  G  L  I  E  L  R  R  T  C  Q  T  G  L  L  R  P  K  *  T  P  P  R  L  G  L  L  G  H  F  R  D  L  D  S  P  A  E  L  L  R  E  H  G  A  L  L  T  F  R  V  A  N  P  D  P  P  V  T  R  G  L  L  P  P  F  P  A  D  L  L  L  E  K  G  Q  M  L  M  F  N  S  A  P  V  T  P  L  L  P  P   </first_frame>
            <second_frame>  Q  T  L  Q  L  E  *  Q  *  G  S  M  L  T  K  L  R  A  K  Y  Y  I  A  N  V  K  S  *  D  F  T  L  R  K  S  Y  I  G  E  Y  R  K  G  *  *  *  I  H  *  H  I  T  Q  K  V  C  N  Y  F  G  F  A  T  I  *  F  N  I  L  F  *  *  I  G  F  *  D  *  I  S  Y  C  H  V  P  L  H  R  *  L  C  C  Y  H  S  D  H  H  R  L  R  W  R  R  R  Y  G  W  H  Y  F  D  H  F  C  N  L  T  D  S  C  N  Q  C  T  *  G  H  S  S  L  R  L  *  F  *  A  H  L  R  P  P  L  T  T  I  S  G  G  L  Q  R  L  L  F  *  L  L  P  F  W  C  C  F  L  S  G  G  L  L  F  *  W  L  F  Q  *  F  *  R  G  C  R  S  S  G  Y  R  I  L  G  *  *  S  S  V  V  P  A  K  L  G  C  S  G  P  N  E  P  H  H  D  W  D  Y  W  A  I  S  V  T  W  I  H  R  R  S  C  S  G  N  T  E  H  Y  *  P  F  A  S  P  I  R  I  H  P  *  P  E  A  Y  F  L  R  F  R  R  I  Y  S  S  K  R  A  K  C  *  C  S  T  P  P  Q  S  R  H  C  F  P  Q  </second_frame>
            <third_frame>   K  H  F  N  L  N  S  N  R  A  V  C  *  P  N  *  G  P  N  I  T  L  Q  T  S  K  V  R  T  L  H  Y  E  K  V  T  *  E  N  I  E  K  D  N  D  R  Y  T  N  I  *  L  K  K  C  V  I  T  L  D  L  P  L  F  N  L  I  Y  F  F  S  K  *  A  F  E  I  K  *  V  T  A  T  Y  P  F  T  G  D  C  A  A  T  I  L  I  I  T  D  S  G  G  G  G  D  M  D  G  T  I  L  I  T  S  A  T  *  L  I  P  V  T  N  A  H  R  D  I  Q  V  *  D  S  S  F  R  P  T  S  G  R  R  *  R  P  F  P  A  D  F  N  A  F  F  F  S  Y  Y  L  S  G  A  A  F  F  L  G  G  F  F  S  D  G  F  F  S  S  F  D  E  V  V  G  A  P  G  T  G  S  W  V  D  R  A  P  S  Y  L  P  N  W  A  A  P  A  Q  M  N  P  T  T  T  G  T  T  G  P  F  P  *  L  G  F  T  G  G  V  A  P  G  T  R  S  T  T  D  L  S  R  R  Q  S  G  S  T  R  N  P  R  P  T  S  S  V  S  G  G  S  T  P  R  K  G  P  N  V  N  V  Q  L  R  P  S  H  A  I  A  S  P  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82032" stop="81775"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMHIGTFKFKTLVLGPPPAAADDHFRRTSTPSFLVTTFLVLLSFWGASFLMAFSVVLTRLSELRVPDPGLIELRRTCQTGLLRPK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81967" stop="81737"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPFPADFNAFFFSYYLSGAAFFLGGFFSDGFFSSFDEVVGAPGTGSWVDRAPSYLPNWAAPAQMNPTTTGTTGPFP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81774" stop="81559"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPPRLGLLGHFRDLDSPAELLREHGALLTFRVANPDPPVTRGLLPPFPADLLLEKGQMLMFNSAPVTPLLPP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="86004" PGL_stop="89288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86004" e_stop="86292"/>
            <exon e_start="87595" e_stop="87883"/>
            <exon e_start="88308" e_stop="88403"/>
            <exon e_start="88754" e_stop="89288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86004" e_stop="86292" e_length="289"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.878">
            <gDNA_intron_boundary i_start="86293" i_stop="87594" i_length="1302"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87595" e_stop="87883" e_length="289"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87884" i_stop="88307" i_length="424"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88308" e_stop="88403" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.991">
            <gDNA_intron_boundary i_start="88404" i_stop="88753" i_length="350"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88754" e_stop="89288" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86004" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="88918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86029" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86030" stop="86292"/>
              <exon start="87595" stop="87704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86071" stop="86292"/>
              <exon start="87595" stop="87655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86092" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="88868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86093" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="88790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86093" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86093" stop="86292"/>
              <exon start="87595" stop="87883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86093" stop="86292"/>
              <exon start="87595" stop="87883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86093" stop="86292"/>
              <exon start="87595" stop="87768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86094" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86095" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="88999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86099" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86099" stop="86292"/>
              <exon start="87595" stop="87883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86102" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="88911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86102" stop="86292"/>
              <exon start="87595" stop="87693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86106" stop="86292"/>
              <exon start="87595" stop="87883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86110" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="88844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86120" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="88996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86120" stop="86292"/>
              <exon start="87595" stop="87883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86127" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="89040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86130" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86132" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="88912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86132" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="88912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86132" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="88861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86132" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86132" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86139" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="88902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86149" stop="86292"/>
              <exon start="87595" stop="87883"/>
              <exon start="88308" stop="88354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87628" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="88952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87710" stop="87883"/>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="89067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88308" stop="88403"/>
              <exon start="88754" stop="89288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88317" stop="88403"/>
              <exon start="88754" stop="89282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88318" stop="88403"/>
              <exon start="88754" stop="89282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88324" stop="88403"/>
              <exon start="88754" stop="89282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88329" stop="88403"/>
              <exon start="88754" stop="89288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTGCAATATTGAAATTGGCACCCCCAAACAAGACAAAATAAATAAAAGCCCTAGAATTAGGTGATTAGTATAATCATTGAATCGAATCGTATTCCCCTCCTTCTCGAAGTTGCAGCAACAGAGTAGAATCAATGTCCTCACGCGATACCAAGAAACCCTCTAGGCAAACCTCCGGTAACCGTGCCGGTGGAATTCGTACACTTTCCGATCTCAACCGTCCATCAGGTCACGATTCCGACAGCGATTCCGATGGTCCCCAAGAATACTACACCGGCGGTGAGAAAAG : TGGAATGCTTGTTCAAGATCCTTCAAAGCATAATGATGTGGACTCCATCTTTGACCGAGCTAGGCAAGTGGGTGCCACACAAGGTCCTTTGGAAAGTGTCGTCCCTAGTTCAAGCTCAACAAGCTTTACTGGATCTGCAAGAACACTTGCAGGGGAGACAGTGCCAACATCAGCTCCTCAACCGCCCGAGTCCATCGTGCACAATATTGTCTTTTGGAGAAATGGTTTCACTGTAAATGATGGTCCTTTACGAAGGCTGGATGATCCTGAAAATGCATCTTTTCTGGAG : AGTATCACAAAGTCTGAATGTCCTAGAGAGTTGGCTCCTGCAGATACCAGGTCCCAGGTGCATTGCAACCTCATAAGAAGGGATGAGAACTGTCCT : GAACCAGAGAAACGCCAAGTTTCGTTTCAGGGAGTGGGAAGAACACTTGGAAGCAGCGCAACTCAAGCAACTTCTGAGCCATCTGCTTCTGCTCCCACAAGCAGAGTCCCAGCAGCTTCCACAAGTGTTCTGGATGAATCATTGCCTTCGACCTCGCTTCAAATTAGATTGGCAGATGGAAGTCGCATGGTTGCACACTTCAACTTCCACCAAACTGTTGGCGACATCCGTGCCTTCATTGATGCTTCAAGGCCAAGTGACACCAGGGCATATCAACTACAAACTGTTGGATTTCCTCCTAAAATGCTCAGTGACCCAACCCAAACGATTGAGCAAGCAGGACTGGCAAATTCAGTGGTTATACAAAAATTTTAATGTGCTCTGCCAAAACTCTCTTTTCGTTTTATTATTTCCAGATGTTTCGATCTATTTACTACTGGATATTAATTTTTAATCTATGTGAATCTAAAGCTGTACCAAGATAGCAGCAGGTGTTGTTTAAAATTCATTTTTTCTTAAACTCAACGTTGCACGG</gDNA_template>
            <first_frame> M  L  Q  Y  *  N  W  H  P  Q  T  R  Q  N  K  *  K  P  *  N  *  V  I  S  I  I  I  E  S  N  R  I  P  L  L  L  E  V  A  A  T  E  *  N  Q  C  P  H  A  I  P  R  N  P  L  G  K  P  P  V  T  V  P  V  E  F  V  H  F  P  I  S  T  V  H  Q  V  T  I  P  T  A  I  P  M  V  P  K  N  T  T  P  A  V  R  K   : V  E  C  L  F  K  I  L  Q  S  I  M  M  W  T  P  S  L  T  E  L  G  K  W  V  P  H  K  V  L  W  K  V  S  S  L  V  Q  A  Q  Q  A  L  L  D  L  Q  E  H  L  Q  G  R  Q  C  Q  H  Q  L  L  N  R  P  S  P  S  C  T  I  L  S  F  G  E  M  V  S  L  *  M  M  V  L  Y  E  G  W  M  I  L  K  M  H  L  F  W  R :   V  S  Q  S  L  N  V  L  E  S  W  L  L  Q  I  P  G  P  R  C  I  A  T  S  *  E  G  M  R  T  V  L :   N  Q  R  N  A  K  F  R  F  R  E  W  E  E  H  L  E  A  A  Q  L  K  Q  L  L  S  H  L  L  L  L  P  Q  A  E  S  Q  Q  L  P  Q  V  F  W  M  N  H  C  L  R  P  R  F  K  L  D  W  Q  M  E  V  A  W  L  H  T  S  T  S  T  K  L  L  A  T  S  V  P  S  L  M  L  Q  G  Q  V  T  P  G  H  I  N  Y  K  L  L  D  F  L  L  K  C  S  V  T  Q  P  K  R  L  S  K  Q  D  W  Q  I  Q  W  L  Y  K  N  F  N  V  L  C  Q  N  S  L  F  V  L  L  F  P  D  V  S  I  Y  L  L  L  D  I  N  F  *  S  M  *  I  *  S  C  T  K  I  A  A  G  V  V  *  N  S  F  F  L  K  L  N  V  A  R </first_frame>
            <second_frame>  C  C  N  I  E  I  G  T  P  K  Q  D  K  I  N  K  S  P  R  I  R  *  L  V  *  S  L  N  R  I  V  F  P  S  F  S  K  L  Q  Q  Q  S  R  I  N  V  L  T  R  Y  Q  E  T  L  *  A  N  L  R  *  P  C  R  W  N  S  Y  T  F  R  S  Q  P  S  I  R  S  R  F  R  Q  R  F  R  W  S  P  R  I  L  H  R  R  *  E  K  :  W  N  A  C  S  R  S  F  K  A  *  *  C  G  L  H  L  *  P  S  *  A  S  G  C  H  T  R  S  F  G  K  C  R  P  *  F  K  L  N  K  L  Y  W  I  C  K  N  T  C  R  G  D  S  A  N  I  S  S  S  T  A  R  V  H  R  A  Q  Y  C  L  L  E  K  W  F  H  C  K  *  W  S  F  T  K  A  G  *  S  *  K  C  I  F  S  G   : E  Y  H  K  V  *  M  S  *  R  V  G  S  C  R  Y  Q  V  P  G  A  L  Q  P  H  K  K  G  *  E  L  S   : *  T  R  E  T  P  S  F  V  S  G  S  G  K  N  T  W  K  Q  R  N  S  S  N  F  *  A  I  C  F  C  S  H  K  Q  S  P  S  S  F  H  K  C  S  G  *  I  I  A  F  D  L  A  S  N  *  I  G  R  W  K  S  H  G  C  T  L  Q  L  P  P  N  C  W  R  H  P  C  L  H  *  C  F  K  A  K  *  H  Q  G  I  S  T  T  N  C  W  I  S  S  *  N  A  Q  *  P  N  P  N  D  *  A  S  R  T  G  K  F  S  G  Y  T  K  I  L  M  C  S  A  K  T  L  F  S  F  Y  Y  F  Q  M  F  R  S  I  Y  Y  W  I  L  I  F  N  L  C  E  S  K  A  V  P  R  *  Q  Q  V  L  F  K  I  H  F  F  L  N  S  T  L  H   </second_frame>
            <third_frame>   V  A  I  L  K  L  A  P  P  N  K  T  K  *  I  K  A  L  E  L  G  D  *  Y  N  H  *  I  E  S  Y  S  P  P  S  R  S  C  S  N  R  V  E  S  M  S  S  R  D  T  K  K  P  S  R  Q  T  S  G  N  R  A  G  G  I  R  T  L  S  D  L  N  R  P  S  G  H  D  S  D  S  D  S  D  G  P  Q  E  Y  Y  T  G  G  E  K  S :   G  M  L  V  Q  D  P  S  K  H  N  D  V  D  S  I  F  D  R  A  R  Q  V  G  A  T  Q  G  P  L  E  S  V  V  P  S  S  S  S  T  S  F  T  G  S  A  R  T  L  A  G  E  T  V  P  T  S  A  P  Q  P  P  E  S  I  V  H  N  I  V  F  W  R  N  G  F  T  V  N  D  G  P  L  R  R  L  D  D  P  E  N  A  S  F  L  E  :  S  I  T  K  S  E  C  P  R  E  L  A  P  A  D  T  R  S  Q  V  H  C  N  L  I  R  R  D  E  N  C  P  :  E  P  E  K  R  Q  V  S  F  Q  G  V  G  R  T  L  G  S  S  A  T  Q  A  T  S  E  P  S  A  S  A  P  T  S  R  V  P  A  A  S  T  S  V  L  D  E  S  L  P  S  T  S  L  Q  I  R  L  A  D  G  S  R  M  V  A  H  F  N  F  H  Q  T  V  G  D  I  R  A  F  I  D  A  S  R  P  S  D  T  R  A  Y  Q  L  Q  T  V  G  F  P  P  K  M  L  S  D  P  T  Q  T  I  E  Q  A  G  L  A  N  S  V  V  I  Q  K  F  *  C  A  L  P  K  L  S  F  R  F  I  I  S  R  C  F  D  L  F  T  T  G  Y  *  F  L  I  Y  V  N  L  K  L  Y  Q  D  S  S  R  C  C  L  K  F  I  F  S  *  T  Q  R  C  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86087" stop="86292"/>
                    <exon start="87595" stop="87883"/>
                    <exon start="88308" stop="88403"/>
                    <exon start="88754" stop="89128"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>963</number_coding_nucleotides>
                  <number_encoded_amino_acids>321</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IESYSPPSRSCSNRVESMSSRDTKKPSRQTSGNRAGGIRTLSDLNRPSGHDSDSDSDGPQEYYTGGEKSGMLVQDPSKHNDVDSIFDRARQVGATQGPLESVVPSSSSTSFTGSARTLAGETVPTSAPQPPESIVHNIVFWRNGFTVNDGPLRRLDDPENASFLESITKSECPRELAPADTRSQVHCNLIRRDENCPEPEKRQVSFQGVGRTLGSSATQATSEPSASAPTSRVPAASTSVLDESLPSTSLQIRLADGSRMVAHFNFHQTVGDIRAFIDASRPSDTRAYQLQTVGFPPKMLSDPTQTIEQAGLANSVVIQKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="96339" PGL_stop="95891"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96339" e_stop="95891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="96339" e_stop="95891" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96339" stop="96018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96339" stop="96035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96339" stop="96187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96338" stop="95891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTGTAAGTGTATAGAAAGAAGATATATGTTTTTCTCTCGCTCTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTGTAATTCGTTGCCTTTTTCTCTGTAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCGCTTTATACAAAACAGAAACAGAATTTATACACTTCTGTTTATAAAGCGAGAGAGGTGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGGGAGAGATGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTACTCCATTTATTTTAGATTATTGC</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  C  K  C  I  E  R  R  Y  M  F  F  S  R  S  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  A  F  F  S  V  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  Y  F  C  M  C  I  Y  N  F  L  A  L  Y  K  T  E  T  E  F  I  H  F  C  L  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  G  E  M  P  D  K  L  *  L  T  F  A  M  E  H  N  *  I  K  P  *  L  L  H  L  F  *  I  I   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  V  S  V  *  K  E  D  I  C  F  S  L  A  L  Y  K  N  K  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  C  N  S  L  P  F  S  L  *  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  L  Y  T  K  Q  K  Q  N  L  Y  T  S  V  Y  K  A  R  E  V  S  E  N  G  E  W  R  A  R  F  L  G  E  R  C  L  T  N  F  S  *  R  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  Y  F  R  L  L  </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  R  K  K  I  Y  V  F  L  S  L  Y  T  K  T  K  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  V  I  R  C  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  I  F  L  H  V  Y  I  Q  F  S  R  F  I  Q  N  R  N  R  I  Y  T  L  L  F  I  K  R  E  R  *  A  R  M  E  S  G  E  R  D  F  W  G  R  D  A  *  Q  T  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  T  P  F  I  L  D  Y  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0175O20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="104785" PGL_stop="100877"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104785" e_stop="104136"/>
            <exon e_start="103891" e_stop="103627"/>
            <exon e_start="101927" e_stop="101683"/>
            <exon e_start="101263" e_stop="100877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="0.968"/>
          <exon-intron don_prob="0.987" acc_prob="0.086" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="104785" e_stop="104136" e_length="650"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="104135" i_stop="103892" i_length="244"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103891" e_stop="103627" e_length="265"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.086">
            <gDNA_intron_boundary i_start="103626" i_stop="101928" i_length="1699"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101927" e_stop="101683" e_length="245"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.957">
            <gDNA_intron_boundary i_start="101682" i_stop="101264" i_length="419"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101263" e_stop="100877" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104785" stop="104136"/>
              <exon start="103891" stop="103627"/>
              <exon start="101927" stop="101683"/>
              <exon start="101263" stop="100877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104520" stop="104136"/>
              <exon start="103891" stop="103627"/>
              <exon start="101927" stop="101683"/>
              <exon start="101263" stop="100889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104455" stop="104136"/>
              <exon start="103891" stop="103627"/>
              <exon start="101927" stop="101889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104455" stop="104136"/>
              <exon start="103891" stop="103667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101904" stop="101683"/>
              <exon start="101263" stop="100887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101829" stop="101683"/>
              <exon start="101263" stop="101015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAAAAAAGGAATATTGTGTGTTTGCTTTTTTTTCTGACTAGTAGTATTGCTAACTATGTATTCCATTAAGGATTTGCTGTGAAAAAGCCTGATATCAGTAAGCATAAAACTCGGGAGATCACTTACACACACACACCCTCGTAAAAAAGAGAAGAGAGATTTACTGTTAAACAGAGGTTTTTTTCCATTTCTTTTTTTTTTCTCAGTGTGTGTGAGAGAGAGAGATGGTTTTCATAGGCAAAAACAAATAGAAAGGAACAAAATTTAGAGTGAAGAAGAAAGTGTGTGAGAGAATAATGGAGGGTGGTTCTAGTGGAAATACTAGTACATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAG : ATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTG : CTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATGAAGAGGTTGACGTGAATAACAGTTTCATCGACCCCCAGGCTGAGGATAGAGAGCTCAAAGGTCAATTGTTGCGTAAGTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAGGAAGCAAGGCAACAATTGGTGGATTGGTGGCTTAGACATATTAAATGGCCATATCCATCG : GAATCTCAGAAGCTTGCACTAGCTGAATCAACGGGATTGGACCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGAAAGAGGCATTGGAAACCATCAGAAGATATGCAGTTTGTTGTGATGGATGCTGCTCATCCACATTACTATATGGATAATGTTCTTGCTAACCATTTCCCAATGGATATGACACCCTCTCTCCTCTGAATTAAGATTTGTCATTATTAGTATCAAGGATGTTTAATTAATTTGCATATTACTTGTGTGCATGTAGTAGTACAAGGTATTGTGACACAATCAACTTTTTATTAGACCAAATATATAAAGTGCTTGTAATAGATCTTTCTATTATCATCTTTAATTATAGAATTAAATAGTTTGTACTTGCTA</gDNA_template>
            <first_frame> K  E  K  R  N  I  V  C  L  L  F  F  L  T  S  S  I  A  N  Y  V  F  H  *  G  F  A  V  K  K  P  D  I  S  K  H  K  T  R  E  I  T  Y  T  H  T  P  S  *  K  R  E  E  R  F  T  V  K  Q  R  F  F  S  I  S  F  F  F  L  S  V  C  E  R  E  R  W  F  S  *  A  K  T  N  R  K  E  Q  N  L  E  *  R  R  K  C  V  R  E  *  W  R  V  V  L  V  E  I  L  V  H  L  V  *  *  *  W  D  M  E  I  M  R  T  T  T  T  T  M  E  M  V  M  E  M  E  M  E  M  *  Q  F  V  L  L  Q  *  *  *  *  C  L  L  L  L  L  L  *  L  T  I  T  M  Q  K  Q  A  A  T  T  S  F  F  F  L  S  W  T  T  T  T  I  I  L  K  K  T  T  T  L  L  L  L  P  S  S  Q  R  L  W  L  I  L  T  T  I  V  S  *  L  L  I  S  I  V  K  R :   *  E  L  R  Q  K  W  W  Q  G  *  R  K  Y  V  P  R  Q  Q  Q  W  A  V  A  V  V  V  V  V  V  E  S  L  E  K  I  L  H  *  I  S  S  W  R  L  I  V  R  C  *  Q  N  M  N  K  N  S  Q  N  P  S  R  K  P  W  F  F  F  Q  E  L  S  V  S  S  K  L  *  L  L  H  L  I  L  L  M  N  L  :  L  W  A  R  Q  W  I  E  M  D  H  L  M  K  R  L  T  *  I  T  V  S  S  T  P  R  L  R  I  E  S  S  K  V  N  C  C  V  S  T  A  V  T  W  E  A  L  S  R  S  S  *  R  R  G  R  K  A  S  C  L  R  K  Q  G  N  N  W  W  I  G  G  L  D  I  L  N  G  H  I  H  R :   N  L  R  S  L  H  *  L  N  Q  R  D  W  T  R  S  K  *  T  T  G  L  S  I  K  E  R  G  I  G  N  H  Q  K  I  C  S  L  L  *  W  M  L  L  I  H  I  T  I  W  I  M  F  L  L  T  I  S  Q  W  I  *  H  P  L  S  S  E  L  R  F  V  I  I  S  I  K  D  V  *  L  I  C  I  L  L  V  C  M  *  *  Y  K  V  L  *  H  N  Q  L  F  I  R  P  N  I  *  S  A  C  N  R  S  F  Y  Y  H  L  *  L  *  N  *  I  V  C  T  C   </first_frame>
            <second_frame>  K  K  K  G  I  L  C  V  C  F  F  F  *  L  V  V  L  L  T  M  Y  S  I  K  D  L  L  *  K  S  L  I  S  V  S  I  K  L  G  R  S  L  T  H  T  H  P  R  K  K  E  K  R  D  L  L  L  N  R  G  F  F  P  F  L  F  F  F  S  V  C  V  R  E  R  D  G  F  H  R  Q  K  Q  I  E  R  N  K  I  *  S  E  E  E  S  V  *  E  N  N  G  G  W  F  *  W  K  Y  *  Y  I  L  F  N  D  D  G  I  W  R  S  *  E  Q  Q  Q  Q  Q  W  K  W  *  W  K  W  K  W  K  C  N  N  L  C  S  S  N  D  D  D  D  A  S  S  S  S  F  F  N  *  Q  *  Q  C  R  N  K  Q  Q  Q  H  P  F  S  S  F  H  G  Q  Q  Q  Q  *  S  S  R  R  Q  Q  L  F  F  F  F  H  Q  V  K  D  Y  G  S  S  S  L  P  S  S  L  D  C  L  S  Q  L  S  K   : D  R  S  S  A  R  S  G  G  K  A  R  G  N  M  C  H  V  S  N  N  G  P  *  Q  *  *  *  W  W  W  N  H  W  R  R  S  C  T  R  S  V  H  G  G  L  L  *  D  A  D  K  I  *  T  R  T  L  K  T  L  Q  G  S  H  G  F  S  F  K  N  *  V  S  V  Q  S  F  N  S  C  T  *  F  F  S  *  I  C :   F  G  R  G  N  G  *  K  W  I  I  *  *  R  G  *  R  E  *  Q  F  H  R  P  P  G  *  G  *  R  A  Q  R  S  I  V  A  *  V  Q  R  L  L  G  K  P  *  A  G  V  H  E  E  E  E  E  R  Q  A  A  *  G  S  K  A  T  I  G  G  L  V  A  *  T  Y  *  M  A  I  S  I   : G  I  S  E  A  C  T  S  *  I  N  G  I  G  P  E  A  N  K  Q  L  V  Y  Q  S  K  K  E  A  L  E  T  I  R  R  Y  A  V  C  C  D  G  C  C  S  S  T  L  L  Y  G  *  C  S  C  *  P  F  P  N  G  Y  D  T  L  S  P  L  N  *  D  L  S  L  L  V  S  R  M  F  N  *  F  A  Y  Y  L  C  A  C  S  S  T  R  Y  C  D  T  I  N  F  L  L  D  Q  I  Y  K  V  L  V  I  D  L  S  I  I  I  F  N  Y  R  I  K  *  F  V  L  A  </second_frame>
            <third_frame>   R  K  K  E  Y  C  V  F  A  F  F  S  D  *  *  Y  C  *  L  C  I  P  L  R  I  C  C  E  K  A  *  Y  Q  *  A  *  N  S  G  D  H  L  H  T  H  T  L  V  K  K  R  R  E  I  Y  C  *  T  E  V  F  F  H  F  F  F  F  S  Q  C  V  *  E  R  E  M  V  F  I  G  K  N  K  *  K  G  T  K  F  R  V  K  K  K  V  C  E  R  I  M  E  G  G  S  S  G  N  T  S  T  S  C  L  M  M  M  G  Y  G  D  H  E  N  N  N  N  N  N  G  N  G  N  G  N  G  N  G  N  V  T  I  C  A  P  P  M  M  M  M  M  P  P  P  P  P  S  L  T  N  N  N  N  A  E  T  S  S  N  N  I  L  F  L  P  F  M  D  N  N  N  N  N  P  Q  E  D  N  N  S  S  S  S  S  I  K  S  K  I  M  A  H  P  H  Y  H  R  L  L  T  A  Y  L  N  C  Q  K  :  I  G  A  P  P  E  V  V  A  R  L  E  E  I  C  A  T  S  A  T  M  G  R  S  S  S  S  S  G  G  G  I  I  G  E  D  P  A  L  D  Q  F  M  E  A  Y  C  E  M  L  T  K  Y  E  Q  E  L  S  K  P  F  K  E  A  M  V  F  L  S  R  I  E  C  Q  F  K  A  L  T  L  A  P  N  S  S  H  E  S   : A  L  G  E  A  M  D  R  N  G  S  S  D  E  E  V  D  V  N  N  S  F  I  D  P  Q  A  E  D  R  E  L  K  G  Q  L  L  R  K  Y  S  G  Y  L  G  S  L  K  Q  E  F  M  K  K  R  K  K  G  K  L  P  K  E  A  R  Q  Q  L  V  D  W  W  L  R  H  I  K  W  P  Y  P  S  :  E  S  Q  K  L  A  L  A  E  S  T  G  L  D  Q  K  Q  I  N  N  W  F  I  N  Q  R  K  R  H  W  K  P  S  E  D  M  Q  F  V  V  M  D  A  A  H  P  H  Y  Y  M  D  N  V  L  A  N  H  F  P  M  D  M  T  P  S  L  L  *  I  K  I  C  H  Y  *  Y  Q  G  C  L  I  N  L  H  I  T  C  V  H  V  V  V  Q  G  I  V  T  Q  S  T  F  Y  *  T  K  Y  I  K  C  L  *  *  I  F  L  L  S  S  L  I  I  E  L  N  S  L  Y  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104531" stop="104136"/>
                    <exon start="103891" stop="103627"/>
                    <exon start="101927" stop="101683"/>
                    <exon start="101263" stop="101060"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGTKFRVKKKVCERIMEGGSSGNTSTSCLMMMGYGDHENNNNNNGNGNGNGNGNVTICAPPMMMMMPPPPPSLTNNNNAETSSNNILFLPFMDNNNNNPQEDNNSSSSSIKSKIMAHPHYHRLLTAYLNCQKIGAPPEVVARLEEICATSATMGRSSSSSGGGIIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMVFLSRIECQFKALTLAPNSSHESALGEAMDRNGSSDEEVDVNNSFIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLVDWWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYMDNVLANHFPMDMTPSLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="104541" e_stop="104136"/>
            <exon e_start="103891" e_stop="103627"/>
            <exon e_start="101933" e_stop="101683"/>
            <exon e_start="101263" e_stop="100887"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.642" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.957" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104541" e_stop="104136" e_length="406"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="104135" i_stop="103892" i_length="244"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103891" e_stop="103627" e_length="265"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.642">
            <gDNA_intron_boundary i_start="103626" i_stop="101934" i_length="1693"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="101933" e_stop="101683" e_length="251"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.957">
            <gDNA_intron_boundary i_start="101682" i_stop="101264" i_length="419"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101263" e_stop="100887" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104541" stop="104136"/>
              <exon start="103891" stop="103627"/>
              <exon start="101933" stop="101888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104541" stop="104136"/>
              <exon start="103891" stop="103627"/>
              <exon start="101933" stop="101890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104455" stop="104136"/>
              <exon start="103891" stop="103667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104215" stop="104136"/>
              <exon start="103891" stop="103627"/>
              <exon start="101933" stop="101769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101904" stop="101683"/>
              <exon start="101263" stop="100887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101829" stop="101683"/>
              <exon start="101263" stop="101015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAAATAGAAAGGAACAAAATTTAGAGTGAAGAAGAAAGTGTGTGAGAGAATAATGGAGGGTGGTTCTAGTGGAAATACTAGTACATCTTGTTTAATGATGATGGGATATGGAGATCATGAGAACAACAACAACAACAATGGAAATGGTAATGGAAATGGAAATGGAAATGTAACAATTTGTGCTCCTCCAATGATGATGATGATGCCTCCTCCTCCTCCTTCTTTAACTAACAATAACAATGCAGAAACAAGCAGCAACAACATCCTTTTTCTTCCTTTCATGGACAACAACAACAATAATCCTCAAGAAGACAACAACTCTTCTTCTTCTTCCATCAAGTCAAAGATTATGGCTCATCCTCACTACCATCGTCTCTTGACTGCTTATCTCAATTGTCAAAAG : ATAGGAGCTCCGCCAGAAGTGGTGGCAAGGCTAGAGGAAATATGTGCCACGTCAGCAACAATGGGCCGTAGCAGTAGTAGTAGTGGTGGTGGAATCATTGGAGAAGATCCTGCACTAGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACAAAATATGAACAAGAACTCTCAAAACCCTTCAAGGAAGCCATGGTTTTTCTTTCAAGAATTGAGTGTCAGTTCAAAGCTTTAACTCTTGCACCTAATTCTTCTCATGAATCTG : GTGTAGCTTTGGGCGAGGCAATGGATAGAAATGGATCATCTGATGAAGAGGTTGACGTGAATAACAGTTTCATCGACCCCCAGGCTGAGGATAGAGAGCTCAAAGGTCAATTGTTGCGTAAGTACAGCGGTTACTTGGGAAGCCTTAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAGGAAGCAAGGCAACAATTGGTGGATTGGTGGCTTAGACATATTAAATGGCCATATCCATCG : GAATCTCAGAAGCTTGCACTAGCTGAATCAACGGGATTGGACCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGAAAGAGGCATTGGAAACCATCAGAAGATATGCAGTTTGTTGTGATGGATGCTGCTCATCCACATTACTATATGGATAATGTTCTTGCTAACCATTTCCCAATGGATATGACACCCTCTCTCCTCTGAATTAAGATTTGTCATTATTAGTATCAAGGATGTTTAATTAATTTGCATATTACTTGTGTGCATGTAGTAGTACAAGGTATTGTGACACAATCAACTTTTTATTAGACCAAATATATAAAGTGCTTGTAATAGATCTTTCTATTATCATCTTTAATTATAGAATTAAATAGTTT</gDNA_template>
            <first_frame> K  Q  I  E  R  N  K  I  *  S  E  E  E  S  V  *  E  N  N  G  G  W  F  *  W  K  Y  *  Y  I  L  F  N  D  D  G  I  W  R  S  *  E  Q  Q  Q  Q  Q  W  K  W  *  W  K  W  K  W  K  C  N  N  L  C  S  S  N  D  D  D  D  A  S  S  S  S  F  F  N  *  Q  *  Q  C  R  N  K  Q  Q  Q  H  P  F  S  S  F  H  G  Q  Q  Q  Q  *  S  S  R  R  Q  Q  L  F  F  F  F  H  Q  V  K  D  Y  G  S  S  S  L  P  S  S  L  D  C  L  S  Q  L  S  K   : D  R  S  S  A  R  S  G  G  K  A  R  G  N  M  C  H  V  S  N  N  G  P  *  Q  *  *  *  W  W  W  N  H  W  R  R  S  C  T  R  S  V  H  G  G  L  L  *  D  A  D  K  I  *  T  R  T  L  K  T  L  Q  G  S  H  G  F  S  F  K  N  *  V  S  V  Q  S  F  N  S  C  T  *  F  F  S  *  I  W :   C  S  F  G  R  G  N  G  *  K  W  I  I  *  *  R  G  *  R  E  *  Q  F  H  R  P  P  G  *  G  *  R  A  Q  R  S  I  V  A  *  V  Q  R  L  L  G  K  P  *  A  G  V  H  E  E  E  E  E  R  Q  A  A  *  G  S  K  A  T  I  G  G  L  V  A  *  T  Y  *  M  A  I  S  I   : G  I  S  E  A  C  T  S  *  I  N  G  I  G  P  E  A  N  K  Q  L  V  Y  Q  S  K  K  E  A  L  E  T  I  R  R  Y  A  V  C  C  D  G  C  C  S  S  T  L  L  Y  G  *  C  S  C  *  P  F  P  N  G  Y  D  T  L  S  P  L  N  *  D  L  S  L  L  V  S  R  M  F  N  *  F  A  Y  Y  L  C  A  C  S  S  T  R  Y  C  D  T  I  N  F  L  L  D  Q  I  Y  K  V  L  V  I  D  L  S  I  I  I  F  N  Y  R  I  K  *  F </first_frame>
            <second_frame>  N  K  *  K  G  T  K  F  R  V  K  K  K  V  C  E  R  I  M  E  G  G  S  S  G  N  T  S  T  S  C  L  M  M  M  G  Y  G  D  H  E  N  N  N  N  N  N  G  N  G  N  G  N  G  N  G  N  V  T  I  C  A  P  P  M  M  M  M  M  P  P  P  P  P  S  L  T  N  N  N  N  A  E  T  S  S  N  N  I  L  F  L  P  F  M  D  N  N  N  N  N  P  Q  E  D  N  N  S  S  S  S  S  I  K  S  K  I  M  A  H  P  H  Y  H  R  L  L  T  A  Y  L  N  C  Q  K  :  I  G  A  P  P  E  V  V  A  R  L  E  E  I  C  A  T  S  A  T  M  G  R  S  S  S  S  S  G  G  G  I  I  G  E  D  P  A  L  D  Q  F  M  E  A  Y  C  E  M  L  T  K  Y  E  Q  E  L  S  K  P  F  K  E  A  M  V  F  L  S  R  I  E  C  Q  F  K  A  L  T  L  A  P  N  S  S  H  E  S   : G  V  A  L  G  E  A  M  D  R  N  G  S  S  D  E  E  V  D  V  N  N  S  F  I  D  P  Q  A  E  D  R  E  L  K  G  Q  L  L  R  K  Y  S  G  Y  L  G  S  L  K  Q  E  F  M  K  K  R  K  K  G  K  L  P  K  E  A  R  Q  Q  L  V  D  W  W  L  R  H  I  K  W  P  Y  P  S  :  E  S  Q  K  L  A  L  A  E  S  T  G  L  D  Q  K  Q  I  N  N  W  F  I  N  Q  R  K  R  H  W  K  P  S  E  D  M  Q  F  V  V  M  D  A  A  H  P  H  Y  Y  M  D  N  V  L  A  N  H  F  P  M  D  M  T  P  S  L  L  *  I  K  I  C  H  Y  *  Y  Q  G  C  L  I  N  L  H  I  T  C  V  H  V  V  V  Q  G  I  V  T  Q  S  T  F  Y  *  T  K  Y  I  K  C  L  *  *  I  F  L  L  S  S  L  I  I  E  L  N  S   </second_frame>
            <third_frame>   T  N  R  K  E  Q  N  L  E  *  R  R  K  C  V  R  E  *  W  R  V  V  L  V  E  I  L  V  H  L  V  *  *  *  W  D  M  E  I  M  R  T  T  T  T  T  M  E  M  V  M  E  M  E  M  E  M  *  Q  F  V  L  L  Q  *  *  *  *  C  L  L  L  L  L  L  *  L  T  I  T  M  Q  K  Q  A  A  T  T  S  F  F  F  L  S  W  T  T  T  T  I  I  L  K  K  T  T  T  L  L  L  L  P  S  S  Q  R  L  W  L  I  L  T  T  I  V  S  *  L  L  I  S  I  V  K  R :   *  E  L  R  Q  K  W  W  Q  G  *  R  K  Y  V  P  R  Q  Q  Q  W  A  V  A  V  V  V  V  V  V  E  S  L  E  K  I  L  H  *  I  S  S  W  R  L  I  V  R  C  *  Q  N  M  N  K  N  S  Q  N  P  S  R  K  P  W  F  F  F  Q  E  L  S  V  S  S  K  L  *  L  L  H  L  I  L  L  M  N  L  :  V  *  L  W  A  R  Q  W  I  E  M  D  H  L  M  K  R  L  T  *  I  T  V  S  S  T  P  R  L  R  I  E  S  S  K  V  N  C  C  V  S  T  A  V  T  W  E  A  L  S  R  S  S  *  R  R  G  R  K  A  S  C  L  R  K  Q  G  N  N  W  W  I  G  G  L  D  I  L  N  G  H  I  H  R :   N  L  R  S  L  H  *  L  N  Q  R  D  W  T  R  S  K  *  T  T  G  L  S  I  K  E  R  G  I  G  N  H  Q  K  I  C  S  L  L  *  W  M  L  L  I  H  I  T  I  W  I  M  F  L  L  T  I  S  Q  W  I  *  H  P  L  S  S  E  L  R  F  V  I  I  S  I  K  D  V  *  L  I  C  I  L  L  V  C  M  *  *  Y  K  V  L  *  H  N  Q  L  F  I  R  P  N  I  *  S  A  C  N  R  S  F  Y  Y  H  L  *  L  *  N  *  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104531" stop="104136"/>
                    <exon start="103891" stop="103627"/>
                    <exon start="101933" stop="101683"/>
                    <exon start="101263" stop="101060"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGTKFRVKKKVCERIMEGGSSGNTSTSCLMMMGYGDHENNNNNNGNGNGNGNGNVTICAPPMMMMMPPPPPSLTNNNNAETSSNNILFLPFMDNNNNNPQEDNNSSSSSIKSKIMAHPHYHRLLTAYLNCQKIGAPPEVVARLEEICATSATMGRSSSSSGGGIIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMVFLSRIECQFKALTLAPNSSHESGVALGEAMDRNGSSDEEVDVNNSFIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLVDWWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYMDNVLANHFPMDMTPSLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="108906" PGL_stop="109554"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108906" e_stop="109554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="108906" e_stop="109554" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108906" stop="109554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108907" stop="109291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  *  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  I  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108907" stop="109554"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="109565" PGL_stop="110372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109565" e_stop="110372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="109565" e_stop="110372" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109565" stop="110372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109567" stop="110370"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="126424" PGL_stop="128550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126424" e_stop="126495"/>
            <exon e_start="126653" e_stop="126744"/>
            <exon e_start="126838" e_stop="126937"/>
            <exon e_start="127021" e_stop="127399"/>
            <exon e_start="128377" e_stop="128550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.953" e_score="0.967"/>
          <exon-intron don_prob="0.229" acc_prob="0.000" e_score="0.980"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.966"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126424" e_stop="126495" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.000">
            <gDNA_intron_boundary i_start="126496" i_stop="126652" i_length="157"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="126653" e_stop="126744" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.953">
            <gDNA_intron_boundary i_start="126745" i_stop="126837" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="126838" e_stop="126937" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.229" acc_prob="0.000">
            <gDNA_intron_boundary i_start="126938" i_stop="127020" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="127021" e_stop="127399" e_length="379"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="127400" i_stop="128376" i_length="977"/>
          </intron>
          <exon e_serial="5" e_score="0.977">
            <gDNA_exon_boundary e_start="128377" e_stop="128550" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126424" stop="126495"/>
              <exon start="126653" stop="126744"/>
              <exon start="126838" stop="126937"/>
              <exon start="127021" stop="127399"/>
              <exon start="128377" stop="128550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554121" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTCCTCAAATATTGGAATTCTGAAAAATTCAAG : AAAATGTCTGAAACAAATGCAAAGAATCGAAAAAAATGATGAATCCACACACTACTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTG : GAGAAAGATAAGGAGACAGTATCATCTAAGGATCTCTTTGTGGTTACAAGAACAAGAAAACTTGGTCGTTTGTACAAGGTCTCAAATGAAGATACTACTA : TAGGCTGAAATGGAGGAAATTGAAAAACAAATAAGCATAAATGGTGAGTATGTTAATGCATTTTCAAGCGTCATGGATCCTGAACATCCGGGACGTCTAAGACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAGTTTGGCAATTTGGAATCAACTTTAAGTGCAACAACTGATGGAATGTAGCAAATGAAAGAGAGGATGCAGAAAATGGAGAAACAGATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGCAGATGTTATTGCACAACTTAAGCATGAAGGATTAATTGATCCTAACATATTGACAGCATTGTCGACTCCTTCACCAAGAGAATCTACTTCTGTTCAAGGGGCTAAACAAG : GTGATGAAATCGAAGAAAGGGATGAAAGCAGTAGTGAAGACTTGACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATATTTTTGAAGATTGAAAATTCTATGGCATGTGTTTCACCTTTTTTGGATGCTATAAAAAGATTTGTATATTTT</gDNA_template>
            <first_frame> K  K  P  G  H  I  P  E  C  Q  F  R  E  L  L  K  Y  W  N  S  E  K  F  K  :  K  M  S  E  T  N  A  K  N  R  K  K  *  *  I  H  T  L  L  A  K  R  V  S  L  *  F  V  I  S  W :   R  K  I  R  R  Q  Y  H  L  R  I  S  L  W  L  Q  E  Q  E  N  L  V  V  C  T  R  S  Q  M  K  I  L  L  :  *  A  E  M  E  E  I  E  K  Q  I  S  I  N  G  E  Y  V  N  A  F  S  S  V  M  D  P  E  H  P  G  R  L  R  L  Y  G  A  G  V  T  K  T  T  L  K  K  K  F  G  N  L  E  S  T  L  S  A  T  T  D  G  M  *  Q  M  K  E  R  M  Q  K  M  E  K  Q  M  E  E  Q  K  K  I  V  R  Q  E  V  I  A  D  V  I  A  Q  L  K  H  E  G  L  I  D  P  N  I  L  T  A  L  S  T  P  S  P  R  E  S  T  S  V  Q  G  A  K  Q   : G  D  E  I  E  E  R  D  E  S  S  S  E  D  L  T  *  E  L  K  Y  I  L  M  *  T  L  L  M  F  *  K  S  Y  I  F  E  D  *  K  F  Y  G  M  C  F  T  F  F  G  C  Y  K  K  I  C  I  F  </first_frame>
            <second_frame>  K  S  L  V  I  F  Q  N  V  N  L  E  S  S  S  N  I  G  I  L  K  N  S  R :   K  C  L  K  Q  M  Q  R  I  E  K  N  D  E  S  T  H  Y  W  Q  K  E  F  R  F  S  S  *  *  A   : G  E  R  *  G  D  S  I  I  *  G  S  L  C  G  Y  K  N  K  K  T  W  S  F  V  Q  G  L  K  *  R  Y  Y  Y :   R  L  K  W  R  K  L  K  N  K  *  A  *  M  V  S  M  L  M  H  F  Q  A  S  W  I  L  N  I  R  D  V  *  D  Y  M  A  Q  E  L  Q  R  L  L  *  K  K  S  L  A  I  W  N  Q  L  *  V  Q  Q  L  M  E  C  S  K  *  K  R  G  C  R  K  W  R  N  R  W  R  N  K  R  K  L  C  D  K  K  L  L  Q  M  L  L  H  N  L  S  M  K  D  *  L  I  L  T  Y  *  Q  H  C  R  L  L  H  Q  E  N  L  L  L  F  K  G  L  N  K  :  V  M  K  S  K  K  G  M  K  A  V  V  K  T  *  H  R  S  *  S  I  Y  *  C  K  L  Y  *  C  S  R  N  H  I  F  L  K  I  E  N  S  M  A  C  V  S  P  F  L  D  A  I  K  R  F  V  Y  F </second_frame>
            <third_frame>   K  A  W  S  Y  S  R  M  S  I  *  R  A  P  Q  I  L  E  F  *  K  I  Q   : E  N  V  *  N  K  C  K  E  S  K  K  M  M  N  P  H  T  T  G  K  K  S  F  A  L  V  R  N  K  L  :  E  K  D  K  E  T  V  S  S  K  D  L  F  V  V  T  R  T  R  K  L  G  R  L  Y  K  V  S  N  E  D  T  T   : I  G  *  N  G  G  N  *  K  T  N  K  H  K  W  *  V  C  *  C  I  F  K  R  H  G  S  *  T  S  G  T  S  K  T  I  W  R  R  S  Y  K  D  Y  F  E  K  K  V  W  Q  F  G  I  N  F  K  C  N  N  *  W  N  V  A  N  E  R  E  D  A  E  N  G  E  T  D  G  G  T  K  E  N  C  A  T  R  S  Y  C  R  C  Y  C  T  T  *  A  *  R  I  N  *  S  *  H  I  D  S  I  V  D  S  F  T  K  R  I  Y  F  C  S  R  G  *  T  R :   *  *  N  R  R  K  G  *  K  Q  *  *  R  L  D  I  G  A  E  V  Y  I  D  V  N  F  I  D  V  L  E  I  I  Y  F  *  R  L  K  I  L  W  H  V  F  H  L  F  W  M  L  *  K  D  L  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127213" stop="127399"/>
                    <exon start="128377" stop="128426"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMKERMQKMEKQMEEQKKIVRQEVIADVIAQLKHEGLIDPNILTALSTPSPRESTSVQGAKQGDEIEERDESSSEDLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="139559" PGL_stop="135624"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139559" e_stop="139191"/>
            <exon e_start="138779" e_stop="138684"/>
            <exon e_start="138603" e_stop="138504"/>
            <exon e_start="138418" e_stop="138357"/>
            <exon e_start="138211" e_stop="138123"/>
            <exon e_start="137370" e_stop="137250"/>
            <exon e_start="137168" e_stop="137025"/>
            <exon e_start="136903" e_stop="136863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.973"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="0.969"/>
          <exon-intron don_prob="0.463" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="139559" e_stop="139191" e_length="369"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="139190" i_stop="138780" i_length="411"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="138779" e_stop="138684" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="138683" i_stop="138604" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="138603" e_stop="138504" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.463" acc_prob="0.972">
            <gDNA_intron_boundary i_start="138503" i_stop="138419" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="138418" e_stop="138357" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="138356" i_stop="138212" i_length="145"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="138211" e_stop="138123" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.978">
            <gDNA_intron_boundary i_start="138122" i_stop="137371" i_length="752"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="137370" e_stop="137250" e_length="121"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.991">
            <gDNA_intron_boundary i_start="137249" i_stop="137169" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="137168" e_stop="137025" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="137024" i_stop="136904" i_length="121"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="136903" e_stop="136863" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139559" stop="139191"/>
              <exon start="138779" stop="138684"/>
              <exon start="138603" stop="138591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139506" stop="139191"/>
              <exon start="138779" stop="138684"/>
              <exon start="138603" stop="138504"/>
              <exon start="138418" stop="138411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138710" stop="138684"/>
              <exon start="138603" stop="138504"/>
              <exon start="138418" stop="138357"/>
              <exon start="138211" stop="138123"/>
              <exon start="137370" stop="137250"/>
              <exon start="137168" stop="137025"/>
              <exon start="136903" stop="136863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325276" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAACCTTTAAAAGATAAAAAAATTCTATGACTTCTCGGAGCAATTCTTTTTCTAATTTCTCAGAATCATCGTACGAATACGATGATAAGGATTGTTCCACCGTCACGACTTCGGATCGGGATGAGCCCCTGAATCCGGGTCATAGGAACAACTCGTTTAACGGGTTATTGGGTTTCACGTTCGGGTCCAAGAAGATGAGGAAGAAGAAACCCTTTTGTCAGGAAAAAGCAATTGTCGGGTTGGCTCTATTGGTGATCGGTTTTGTCGGGATGAATTGGTGGATGCTTTCCCGGATCCAGAACTCGGGTCGGGCTTCTCAGGTTGAGTTCAGGTTCTTGGAAGATAATTCCTCCACTCTATCAATTCGG : GAAGAACTGCTAAGGCTTGGGCTTGGCGAAGAGAGAAAGCCTCAGAAAACAATCTACGCACGATTGCTGGCTAAAGCTGCTCATTCCTTAGCTGAG : GGACAGAAAAAATCCGAGCCAAAAGATTTGTGGGCTGAACCGTATTTTGTTGCTTCCTCTTGGAAACCTTGTGCTGAGCAGCGTCAATGGCTACCTAGTG : AGGGAAAAAATGGTTACATTATTGTCACTGCAAATGGTGGGATAAATCAGCAGCGAGTAGCT : GTCTGCAATATTGTTGCTATTGCAAGATTACTCGATGCAACCTTGGTTCTTCCGAAATTTCTGTACAGTAGTGTTTGGAAAGATGTGAG : CCAGTTTGGCGAGATCTACCAGGAGGAGCATTTCATTGACTACCTGAAACCTGATATTCGTATAGTTAGAGAACTTCCTCAGGAGTTGCAGTCATTAGATCTAGAGGCCATTGGCAGTTTG : GTGACAGATGCAGATGTTGTAAAAGAAGCAAAGCCAGGTTTCTACAAGAAATATATTCTTCCTATTTTACATAAAAACGGAGTTGTTCATTTTCTTGGATTTGGGAATCGATTGGCATCTGACCCGTTACCACCTCAGGTGCAG : AGACTTCGATGCAGATGTAATTTTCATGCTCTGAAATTTGT</gDNA_template>
            <first_frame> Q  T  F  K  R  *  K  N  S  M  T  S  R  S  N  S  F  S  N  F  S  E  S  S  Y  E  Y  D  D  K  D  C  S  T  V  T  T  S  D  R  D  E  P  L  N  P  G  H  R  N  N  S  F  N  G  L  L  G  F  T  F  G  S  K  K  M  R  K  K  K  P  F  C  Q  E  K  A  I  V  G  L  A  L  L  V  I  G  F  V  G  M  N  W  W  M  L  S  R  I  Q  N  S  G  R  A  S  Q  V  E  F  R  F  L  E  D  N  S  S  T  L  S  I  R  :  E  E  L  L  R  L  G  L  G  E  E  R  K  P  Q  K  T  I  Y  A  R  L  L  A  K  A  A  H  S  L  A  E  :  G  Q  K  K  S  E  P  K  D  L  W  A  E  P  Y  F  V  A  S  S  W  K  P  C  A  E  Q  R  Q  W  L  P  S   : E  G  K  N  G  Y  I  I  V  T  A  N  G  G  I  N  Q  Q  R  V  A  :  V  C  N  I  V  A  I  A  R  L  L  D  A  T  L  V  L  P  K  F  L  Y  S  S  V  W  K  D  V  S :   Q  F  G  E  I  Y  Q  E  E  H  F  I  D  Y  L  K  P  D  I  R  I  V  R  E  L  P  Q  E  L  Q  S  L  D  L  E  A  I  G  S  L  :  V  T  D  A  D  V  V  K  E  A  K  P  G  F  Y  K  K  Y  I  L  P  I  L  H  K  N  G  V  V  H  F  L  G  F  G  N  R  L  A  S  D  P  L  P  P  Q  V  Q  :  R  L  R  C  R  C  N  F  H  A  L  K  F   </first_frame>
            <second_frame>  K  P  L  K  D  K  K  I  L  *  L  L  G  A  I  L  F  L  I  S  Q  N  H  R  T  N  T  M  I  R  I  V  P  P  S  R  L  R  I  G  M  S  P  *  I  R  V  I  G  T  T  R  L  T  G  Y  W  V  S  R  S  G  P  R  R  *  G  R  R  N  P  F  V  R  K  K  Q  L  S  G  W  L  Y  W  *  S  V  L  S  G  *  I  G  G  C  F  P  G  S  R  T  R  V  G  L  L  R  L  S  S  G  S  W  K  I  I  P  P  L  Y  Q  F  G :   K  N  C  *  G  L  G  L  A  K  R  E  S  L  R  K  Q  S  T  H  D  C  W  L  K  L  L  I  P  *  L  R :   D  R  K  N  P  S  Q  K  I  C  G  L  N  R  I  L  L  L  P  L  G  N  L  V  L  S  S  V  N  G  Y  L  V  :  R  E  K  M  V  T  L  L  S  L  Q  M  V  G  *  I  S  S  E  *  L :   S  A  I  L  L  L  L  Q  D  Y  S  M  Q  P  W  F  F  R  N  F  C  T  V  V  F  G  K  M  *   : A  S  L  A  R  S  T  R  R  S  I  S  L  T  T  *  N  L  I  F  V  *  L  E  N  F  L  R  S  C  S  H  *  I  *  R  P  L  A  V  W :   *  Q  M  Q  M  L  *  K  K  Q  S  Q  V  S  T  R  N  I  F  F  L  F  Y  I  K  T  E  L  F  I  F  L  D  L  G  I  D  W  H  L  T  R  Y  H  L  R  C  R :   D  F  D  A  D  V  I  F  M  L  *  N  L  </second_frame>
            <third_frame>   N  L  *  K  I  K  K  F  Y  D  F  S  E  Q  F  F  F  *  F  L  R  I  I  V  R  I  R  *  *  G  L  F  H  R  H  D  F  G  S  G  *  A  P  E  S  G  S  *  E  Q  L  V  *  R  V  I  G  F  H  V  R  V  Q  E  D  E  E  E  E  T  L  L  S  G  K  S  N  C  R  V  G  S  I  G  D  R  F  C  R  D  E  L  V  D  A  F  P  D  P  E  L  G  S  G  F  S  G  *  V  Q  V  L  G  R  *  F  L  H  S  I  N  S   : G  R  T  A  K  A  W  A  W  R  R  E  K  A  S  E  N  N  L  R  T  I  A  G  *  S  C  S  F  L  S  *   : G  T  E  K  I  R  A  K  R  F  V  G  *  T  V  F  C  C  F  L  L  E  T  L  C  *  A  A  S  M  A  T  *  * :   G  K  K  W  L  H  Y  C  H  C  K  W  W  D  K  S  A  A  S  S   : C  L  Q  Y  C  C  Y  C  K  I  T  R  C  N  L  G  S  S  E  I  S  V  Q  *  C  L  E  R  C  E  :  P  V  W  R  D  L  P  G  G  A  F  H  *  L  P  E  T  *  Y  S  Y  S  *  R  T  S  S  G  V  A  V  I  R  S  R  G  H  W  Q  F   : G  D  R  C  R  C  C  K  R  S  K  A  R  F  L  Q  E  I  Y  S  S  Y  F  T  *  K  R  S  C  S  F  S  W  I  W  E  S  I  G  I  *  P  V  T  T  S  G  A   : E  T  S  M  Q  M  *  F  S  C  S  E  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139541" stop="139191"/>
                    <exon start="138779" stop="138684"/>
                    <exon start="138603" stop="138504"/>
                    <exon start="138418" stop="138357"/>
                    <exon start="138211" stop="138123"/>
                    <exon start="137370" stop="137250"/>
                    <exon start="137168" stop="137025"/>
                    <exon start="136903" stop="136865"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNSMTSRSNSFSNFSESSYEYDDKDCSTVTTSDRDEPLNPGHRNNSFNGLLGFTFGSKKMRKKKPFCQEKAIVGLALLVIGFVGMNWWMLSRIQNSGRASQVEFRFLEDNSSTLSIREELLRLGLGEERKPQKTIYARLLAKAAHSLAEGQKKSEPKDLWAEPYFVASSWKPCAEQRQWLPSEGKNGYIIVTANGGINQQRVAVCNIVAIARLLDATLVLPKFLYSSVWKDVSQFGEIYQEEHFIDYLKPDIRIVRELPQELQSLDLEAIGSLVTDADVVKEAKPGFYKKYILPILHKNGVVHFLGFGNRLASDPLPPQVQRLRCRCNFHALKF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="137281" e_stop="137250"/>
            <exon e_start="137168" e_stop="136569"/>
            <exon e_start="135862" e_stop="135624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="137281" e_stop="137250" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.991">
            <gDNA_intron_boundary i_start="137249" i_stop="137169" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137168" e_stop="136569" e_length="600"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.929">
            <gDNA_intron_boundary i_start="136568" i_stop="135863" i_length="706"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="135862" e_stop="135624" e_length="239"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137281" stop="137250"/>
              <exon start="137168" stop="136799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136904" stop="136569"/>
              <exon start="135862" stop="135624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCATTAGATCTAGAGGCCATTGGCAGTTTG : GTGACAGATGCAGATGTTGTAAAAGAAGCAAAGCCAGGTTTCTACAAGAAATATATTCTTCCTATTTTACATAAAAACGGAGTTGTTCATTTTCTTGGATTTGGGAATCGATTGGCATCTGACCCGTTACCACCTCAGGTGCAGGTAAACCCATCGAACTTGATATTAGGCTTCCTTGTTGATTTCTCAATTTTTCATATTATCTTCTCATTTAGTCTGATTCCATAATTTCTACCTTGGTTCCTGATTTGGGGACTTCATCTAGAGACTTCGATGCAGATGTAATTTTCATGCTCTGAAATTTGTTCCAAAGATAGAAGAAACTGGAGCTTTACTTATACGGAGAATGCGTCAGAATGTTACACGCTTGGGACCCTTGGATCGTCACCTAGTGGGTCCCTTCTCAAAGTCTATGCTGAAGGGTGAACATAATCGTGGAGAAAAAGTAGCTAGATATTTAGCTTTGCATCTGAGGTTTGAAATTGATATGGTGGCTCATTCCCTCTGTGAATATGGTGGGGGTGAAGAAGAAAGAAATGAACTGGAATTATATCGTGAAATCCACTTCCCTGCATTAGTGGAACTCAAGAAGACCACAAA : GTTGCCTTCCCCAGCAACTCTAAAGGCTGAAGGATTGTGTCCTTTAATGCCTGAAGAGACAGTGCTAATGCTTGCTGCCCTTGGTTTTAATCGGCAGACACGCATATACTTGGCAGGTGCACATATCTATGGAGGCAAATCAAGATTGGCCTCCTTGACCACCTTGTATCCTAATCTGGTCACAAAGGAAAGCTTACTTTCCTCTTCTGAGATTGAACCATTCATGAATTTCTCTTCTC</gDNA_template>
            <first_frame> S  H  *  I  *  R  P  L  A  V  W :   *  Q  M  Q  M  L  *  K  K  Q  S  Q  V  S  T  R  N  I  F  F  L  F  Y  I  K  T  E  L  F  I  F  L  D  L  G  I  D  W  H  L  T  R  Y  H  L  R  C  R  *  T  H  R  T  *  Y  *  A  S  L  L  I  S  Q  F  F  I  L  S  S  H  L  V  *  F  H  N  F  Y  L  G  S  *  F  G  D  F  I  *  R  L  R  C  R  C  N  F  H  A  L  K  F  V  P  K  I  E  E  T  G  A  L  L  I  R  R  M  R  Q  N  V  T  R  L  G  P  L  D  R  H  L  V  G  P  F  S  K  S  M  L  K  G  E  H  N  R  G  E  K  V  A  R  Y  L  A  L  H  L  R  F  E  I  D  M  V  A  H  S  L  C  E  Y  G  G  G  E  E  E  R  N  E  L  E  L  Y  R  E  I  H  F  P  A  L  V  E  L  K  K  T  T  K :   L  P  S  P  A  T  L  K  A  E  G  L  C  P  L  M  P  E  E  T  V  L  M  L  A  A  L  G  F  N  R  Q  T  R  I  Y  L  A  G  A  H  I  Y  G  G  K  S  R  L  A  S  L  T  T  L  Y  P  N  L  V  T  K  E  S  L  L  S  S  S  E  I  E  P  F  M  N  F  S  S  </first_frame>
            <second_frame>  V  I  R  S  R  G  H  W  Q  F   : G  D  R  C  R  C  C  K  R  S  K  A  R  F  L  Q  E  I  Y  S  S  Y  F  T  *  K  R  S  C  S  F  S  W  I  W  E  S  I  G  I  *  P  V  T  T  S  G  A  G  K  P  I  E  L  D  I  R  L  P  C  *  F  L  N  F  S  Y  Y  L  L  I  *  S  D  S  I  I  S  T  L  V  P  D  L  G  T  S  S  R  D  F  D  A  D  V  I  F  M  L  *  N  L  F  Q  R  *  K  K  L  E  L  Y  L  Y  G  E  C  V  R  M  L  H  A  W  D  P  W  I  V  T  *  W  V  P  S  Q  S  L  C  *  R  V  N  I  I  V  E  K  K  *  L  D  I  *  L  C  I  *  G  L  K  L  I  W  W  L  I  P  S  V  N  M  V  G  V  K  K  K  E  M  N  W  N  Y  I  V  K  S  T  S  L  H  *  W  N  S  R  R  P  Q   : S  C  L  P  Q  Q  L  *  R  L  K  D  C  V  L  *  C  L  K  R  Q  C  *  C  L  L  P  L  V  L  I  G  R  H  A  Y  T  W  Q  V  H  I  S  M  E  A  N  Q  D  W  P  P  *  P  P  C  I  L  I  W  S  Q  R  K  A  Y  F  P  L  L  R  L  N  H  S  *  I  S  L  L </second_frame>
            <third_frame>   S  L  D  L  E  A  I  G  S  L  :  V  T  D  A  D  V  V  K  E  A  K  P  G  F  Y  K  K  Y  I  L  P  I  L  H  K  N  G  V  V  H  F  L  G  F  G  N  R  L  A  S  D  P  L  P  P  Q  V  Q  V  N  P  S  N  L  I  L  G  F  L  V  D  F  S  I  F  H  I  I  F  S  F  S  L  I  P  *  F  L  P  W  F  L  I  W  G  L  H  L  E  T  S  M  Q  M  *  F  S  C  S  E  I  C  S  K  D  R  R  N  W  S  F  T  Y  T  E  N  A  S  E  C  Y  T  L  G  T  L  G  S  S  P  S  G  S  L  L  K  V  Y  A  E  G  *  T  *  S  W  R  K  S  S  *  I  F  S  F  A  S  E  V  *  N  *  Y  G  G  S  F  P  L  *  I  W  W  G  *  R  R  K  K  *  T  G  I  I  S  *  N  P  L  P  C  I  S  G  T  Q  E  D  H  K  :  V  A  F  P  S  N  S  K  G  *  R  I  V  S  F  N  A  *  R  D  S  A  N  A  C  C  P  W  F  *  S  A  D  T  H  I  L  G  R  C  T  Y  L  W  R  Q  I  K  I  G  L  L  D  H  L  V  S  *  S  G  H  K  G  K  L  T  F  L  F  *  D  *  T  I  H  E  F  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136903" stop="136569"/>
                    <exon start="135862" stop="135625"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRCRCNFHALKFVPKIEETGALLIRRMRQNVTRLGPLDRHLVGPFSKSMLKGEHNRGEKVARYLALHLRFEIDMVAHSLCEYGGGEEERNELELYREIHFPALVELKKTTKLPSPATLKAEGLCPLMPEETVLMLAALGFNRQTRIYLAGAHIYGGKSRLASLTTLYPNLVTKESLLSSSEIEPFMNFSS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137279" stop="137250"/>
                    <exon start="137168" stop="136941"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLDLEAIGSLVTDADVVKEAKPGFYKKYILPILHKNGVVHFLGFGNRLASDPLPPQVQVNPSNLILGFLVDFSIFHIIFSFSLIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="138068" e_stop="137294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="138068" e_stop="137294" e_length="775"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138068" stop="137294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138068" stop="137589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTACAATAGGGATTGCAAAATAATATAGCAAAACTGTCATAATAGTGGGATCTTTGATTACAGATTCACAACATCTTTGATATACTATTTTGTAACTTCACTTGCGAATTCTTGTTGTTGACTGGAAACACGTACTAGTTGAATAGTATTTCATTTAATTCTTTTCCATGTTCTTTCCATAACTAATTAAACAACTAAACTGTCTTAGTCTTGAAATTCTTTAACTCAATAATTGGGAATTTGTGATGTAACACTGATTTCTCTTTGGTCGCTTGTCTACACAACATTAGCTCTCCAATACTTTGTGATTAAACCAAAGGTTCGCCTGGCTTTTCTTTGTTGAATCTACTTTAGAGATGCAAGTATGTGATAGTTCTTTTCCTGAACTCTTCCCCAATGTGCTTTGAGCTATATAAGTATCTCCATATGCGTTTTTAACTGCTGTTGAACCTCCCTTGCATTTGCAACTAGCTATGCCCCGTCCAAAAAAAATTATATGTTATCTTGGAAGTGTTTGCATCAGTAACTTTTAGTATGATCTTCATCAAATAGAAATTAGAACTTTAAATAAGATATTTATGTGCCTTCCCGATTTTGCTTCCTTCGAACTTGTTTCCTTTTCTTGCTAATCTAAAACATTTGATACCTTATGAGTTCCTTATATTGAAGATTGATAGATGTAACTTATAATTTCTTAGCCAGTTTGGCGAGATCTACCAGGAGGAGCATTTCATTGACTACCTGAAACCTGATATTCGTATAGTTAGAGAACTTC</gDNA_template>
            <first_frame> V  Q  *  G  L  Q  N  N  I  A  K  L  S  *  *  W  D  L  *  L  Q  I  H  N  I  F  D  I  L  F  C  N  F  T  C  E  F  L  L  L  T  G  N  T  Y  *  L  N  S  I  S  F  N  S  F  P  C  S  F  H  N  *  L  N  N  *  T  V  L  V  L  K  F  F  N  S  I  I  G  N  L  *  C  N  T  D  F  S  L  V  A  C  L  H  N  I  S  S  P  I  L  C  D  *  T  K  G  S  P  G  F  S  L  L  N  L  L  *  R  C  K  Y  V  I  V  L  F  L  N  S  S  P  M  C  F  E  L  Y  K  Y  L  H  M  R  F  *  L  L  L  N  L  P  C  I  C  N  *  L  C  P  V  Q  K  K  L  Y  V  I  L  E  V  F  A  S  V  T  F  S  M  I  F  I  K  *  K  L  E  L  *  I  R  Y  L  C  A  F  P  I  L  L  P  S  N  L  F  P  F  L  A  N  L  K  H  L  I  P  Y  E  F  L  I  L  K  I  D  R  C  N  L  *  F  L  S  Q  F  G  E  I  Y  Q  E  E  H  F  I  D  Y  L  K  P  D  I  R  I  V  R  E  L  </first_frame>
            <second_frame>  Y  N  R  D  C  K  I  I  *  Q  N  C  H  N  S  G  I  F  D  Y  R  F  T  T  S  L  I  Y  Y  F  V  T  S  L  A  N  S  C  C  *  L  E  T  R  T  S  *  I  V  F  H  L  I  L  F  H  V  L  S  I  T  N  *  T  T  K  L  S  *  S  *  N  S  L  T  Q  *  L  G  I  C  D  V  T  L  I  S  L  W  S  L  V  Y  T  T  L  A  L  Q  Y  F  V  I  K  P  K  V  R  L  A  F  L  C  *  I  Y  F  R  D  A  S  M  *  *  F  F  S  *  T  L  P  Q  C  A  L  S  Y  I  S  I  S  I  C  V  F  N  C  C  *  T  S  L  A  F  A  T  S  Y  A  P  S  K  K  N  Y  M  L  S  W  K  C  L  H  Q  *  L  L  V  *  S  S  S  N  R  N  *  N  F  K  *  D  I  Y  V  P  S  R  F  C  F  L  R  T  C  F  L  F  L  L  I  *  N  I  *  Y  L  M  S  S  L  Y  *  R  L  I  D  V  T  Y  N  F  L  A  S  L  A  R  S  T  R  R  S  I  S  L  T  T  *  N  L  I  F  V  *  L  E  N  F </second_frame>
            <third_frame>   T  I  G  I  A  K  *  Y  S  K  T  V  I  I  V  G  S  L  I  T  D  S  Q  H  L  *  Y  T  I  L  *  L  H  L  R  I  L  V  V  D  W  K  H  V  L  V  E  *  Y  F  I  *  F  F  S  M  F  F  P  *  L  I  K  Q  L  N  C  L  S  L  E  I  L  *  L  N  N  W  E  F  V  M  *  H  *  F  L  F  G  R  L  S  T  Q  H  *  L  S  N  T  L  *  L  N  Q  R  F  A  W  L  F  F  V  E  S  T  L  E  M  Q  V  C  D  S  S  F  P  E  L  F  P  N  V  L  *  A  I  *  V  S  P  Y  A  F  L  T  A  V  E  P  P  L  H  L  Q  L  A  M  P  R  P  K  K  I  I  C  Y  L  G  S  V  C  I  S  N  F  *  Y  D  L  H  Q  I  E  I  R  T  L  N  K  I  F  M  C  L  P  D  F  A  S  F  E  L  V  S  F  S  C  *  S  K  T  F  D  T  L  *  V  P  Y  I  E  D  *  *  M  *  L  I  I  S  *  P  V  W  R  D  L  P  G  G  A  F  H  *  L  P  E  T  *  Y  S  Y  S  *  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0175O20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="136289" PGL_stop="137007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136289" e_stop="137007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="136289" e_stop="137007" e_length="719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136289" stop="137007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434042" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTTTCCTAGATATATACAAATGCTTTTGGAACAATTTTTTTTGTTTACTTATTAAACAGCAGAAAATATGTAAGAAAACCACTTATTTCCATGGAAACATTTTTCTTCAAATCAAACAGGCCCTTAGTTCAATATGTTTGTGTGTGTGTGTCTGGTGCACTCTCTGGATAATCAAAGATGCAAGCACCAGTCTAGGAAAATCAAACAAGTCAGCCTAGCTTTTTCTTATGAGTTGTGCATCAAGTAAAGGAATTGAGCAATGATTACATATAACATACTTTGTGGTCTTCTTGAGTTCCACTAATGCAGGGAAGTGGATTTCACGATATAATTCCAGTTCATTTCTTTCTTCTTCACCCCCACCATATTCACAGAGGGAATGAGCCACCATATCAATTTCAAACCTCAGATGCAAAGCTAAATATCTAGCTACTTTTTCTCCACGATTATGTTCACCCTTCAGCATAGACTTTGAGAAGGGACCCACTAGGTGACGATCCAAGGGTCCCAAGCGTGTAACATTCTGACGCATTCTCCGTATAAGTAAAGCTCCAGTTTCTTCTATCTTTGGAACAAATTTCAGAGCATGAAAATTACATCTGCATCGAAGTCTCTAGATGAAGTCCCCAAATCAGGAACCAAGGTAGAAATTATGGAATCAGACTAAATGAGAAGATAATATGAAAAATTGAGAAATCAACAAGGAAGCCTAATATC</gDNA_template>
            <first_frame> C  F  P  R  Y  I  Q  M  L  L  E  Q  F  F  L  F  T  Y  *  T  A  E  N  M  *  E  N  H  L  F  P  W  K  H  F  S  S  N  Q  T  G  P  *  F  N  M  F  V  C  V  C  L  V  H  S  L  D  N  Q  R  C  K  H  Q  S  R  K  I  K  Q  V  S  L  A  F  S  Y  E  L  C  I  K  *  R  N  *  A  M  I  T  Y  N  I  L  C  G  L  L  E  F  H  *  C  R  E  V  D  F  T  I  *  F  Q  F  I  S  F  F  F  T  P  T  I  F  T  E  G  M  S  H  H  I  N  F  K  P  Q  M  Q  S  *  I  S  S  Y  F  F  S  T  I  M  F  T  L  Q  H  R  L  *  E  G  T  H  *  V  T  I  Q  G  S  Q  A  C  N  I  L  T  H  S  P  Y  K  *  S  S  S  F  F  Y  L  W  N  K  F  Q  S  M  K  I  T  S  A  S  K  S  L  D  E  V  P  K  S  G  T  K  V  E  I  M  E  S  D  *  M  R  R  *  Y  E  K  L  R  N  Q  Q  G  S  L  I   </first_frame>
            <second_frame>  V  F  L  D  I  Y  K  C  F  W  N  N  F  F  C  L  L  I  K  Q  Q  K  I  C  K  K  T  T  Y  F  H  G  N  I  F  L  Q  I  K  Q  A  L  S  S  I  C  L  C  V  C  V  W  C  T  L  W  I  I  K  D  A  S  T  S  L  G  K  S  N  K  S  A  *  L  F  L  M  S  C  A  S  S  K  G  I  E  Q  *  L  H  I  T  Y  F  V  V  F  L  S  S  T  N  A  G  K  W  I  S  R  Y  N  S  S  S  F  L  S  S  S  P  P  P  Y  S  Q  R  E  *  A  T  I  S  I  S  N  L  R  C  K  A  K  Y  L  A  T  F  S  P  R  L  C  S  P  F  S  I  D  F  E  K  G  P  T  R  *  R  S  K  G  P  K  R  V  T  F  *  R  I  L  R  I  S  K  A  P  V  S  S  I  F  G  T  N  F  R  A  *  K  L  H  L  H  R  S  L  *  M  K  S  P  N  Q  E  P  R  *  K  L  W  N  Q  T  K  *  E  D  N  M  K  N  *  E  I  N  K  E  A  *  Y  </second_frame>
            <third_frame>   F  S  *  I  Y  T  N  A  F  G  T  I  F  F  V  Y  L  L  N  S  R  K  Y  V  R  K  P  L  I  S  M  E  T  F  F  F  K  S  N  R  P  L  V  Q  Y  V  C  V  C  V  S  G  A  L  S  G  *  S  K  M  Q  A  P  V  *  E  N  Q  T  S  Q  P  S  F  F  L  *  V  V  H  Q  V  K  E  L  S  N  D  Y  I  *  H  T  L  W  S  S  *  V  P  L  M  Q  G  S  G  F  H  D  I  I  P  V  H  F  F  L  L  H  P  H  H  I  H  R  G  N  E  P  P  Y  Q  F  Q  T  S  D  A  K  L  N  I  *  L  L  F  L  H  D  Y  V  H  P  S  A  *  T  L  R  R  D  P  L  G  D  D  P  R  V  P  S  V  *  H  S  D  A  F  S  V  *  V  K  L  Q  F  L  L  S  L  E  Q  I  S  E  H  E  N  Y  I  C  I  E  V  S  R  *  S  P  Q  I  R  N  Q  G  R  N  Y  G  I  R  L  N  E  K  I  I  *  K  I  E  K  S  T  R  K  P  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136290" stop="136508"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLDIYKCFWNNFFCLLIKQQKICKKTTYFHGNIFLQIKQALSSICLCVCVWCTLWIIKDASTSLGKSNKSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="144624" PGL_stop="145070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="144624" e_stop="145070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="144624" e_stop="145070" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144624" stop="144946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144624" stop="144929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144624" stop="144774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144625" stop="145070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATGTTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTAGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAGACGAGAATGGGAGAGTGGCGAGCGAGACTTCTGGGAGAGAGACGCCTGGCAAATTTTTGTCAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCAATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  K  Y  M  F  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  *  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  N  Y  T  L  L  C  I  K  R  E  R  R  E  W  E  S  G  E  R  D  F  W  E  R  D  A  W  Q  I  F  V  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  Q  F  N  L  G  Y  * </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  N  I  C  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  F  S  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  I  I  H  F  C  V  *  S  E  R  D  E  N  G  R  V  A  S  E  T  S  G  R  E  T  P  G  K  F  L  S  M  F  A  M  E  H  N  *  I  K  P  *  L  F  N  L  I  *  V  I   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  S  V  Y  K  A  R  E  T  R  M  G  E  W  R  A  R  L  L  G  E  R  R  L  A  N  F  C  Q  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="144840" stop="145070"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYNTKIYIFACVYTIFSRFIQNRNRNYTLLCIKRERREWESGERDFWERDAWQIFVNVCYGAQLNQTLAIQFNLGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0175O20.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="144848" stop="145057"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEDIHFCMCIYNFLSLYTKQKQKLYTSVYKARETRMGEWRARLLGERRLANFCQCLLWSTIKSNPSYSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="145659" PGL_stop="145377"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145659" e_stop="145377"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="145659" e_stop="145377" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145659" stop="145377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555262" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCCAATGTCTGAAGTTGTGCAAGCACTGGTTCGGTTAATGCAAAGAGCAAGTGTGGTCAAAAGGCGATCCAGTGATGAATCAGCTTTCACATACAAGACTCCGGATCATGAGACGGTTGACATGCCATAGATAAAACATACACGACGAAGCAGCCTTTGCAATTTTGTAAGTAACTTCTGTGAAGGTCAAGAGTAACTGTGGCAGATGAAACTGGGAGGTGTCAATACCAGGGACATTAAATATGTAATTATTTTTCACATCTTCGTCGTTTAAAAAAAAAA</gDNA_template>
            <first_frame> P  Q  C  L  K  L  C  K  H  W  F  G  *  C  K  E  Q  V  W  S  K  G  D  P  V  M  N  Q  L  S  H  T  R  L  R  I  M  R  R  L  T  C  H  R  *  N  I  H  D  E  A  A  F  A  I  L  *  V  T  S  V  K  V  K  S  N  C  G  R  *  N  W  E  V  S  I  P  G  T  L  N  M  *  L  F  F  T  S  S  S  F  K  K  K  </first_frame>
            <second_frame>  P  N  V  *  S  C  A  S  T  G  S  V  N  A  K  S  K  C  G  Q  K  A  I  Q  *  *  I  S  F  H  I  Q  D  S  G  S  *  D  G  *  H  A  I  D  K  T  Y  T  T  K  Q  P  L  Q  F  C  K  *  L  L  *  R  S  R  V  T  V  A  D  E  T  G  R  C  Q  Y  Q  G  H  *  I  C  N  Y  F  S  H  L  R  R  L  K  K  K </second_frame>
            <third_frame>   P  M  S  E  V  V  Q  A  L  V  R  L  M  Q  R  A  S  V  V  K  R  R  S  S  D  E  S  A  F  T  Y  K  T  P  D  H  E  T  V  D  M  P  *  I  K  H  T  R  R  S  S  L  C  N  F  V  S  N  F  C  E  G  Q  E  *  L  W  Q  M  K  L  G  G  V  N  T  R  D  I  K  Y  V  I  I  F  H  I  F  V  V  *  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0175O20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 498 chains have been computed
$ 
$ memory statistics:
$ 853368 bytes spliced alignments in total
$ 297 spliced alignments have been stored
$ 2873 bytes was the average size of a spliced alignment
$ 45656 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 2075 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 545 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:54:17
-->
