<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:41:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581255" ref_strand="+" ref_description="SGN-U581255 Tomato 200607#2 [125 ESTs aligned] (*GB) gi|231610|sp|P29790|ATPG_TOBAC (e_value=9e-169) ATP synthase gamma chain, chloroplast precursor; (*ATH) AT4G04640.1 (e_value=4e-152) | Symbol: None | ATP synthase gamma chain 1, chloroplast (ATPC1), identical to SP:Q01908 ATP synthase gamma chain 1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis thaliana} | chr4:2350496-2352016 REVERSE | Aliases: T19J18.4, T19J18_4; (*SWP) sp|P29790|ATPG_TOBAC (e_value=6e-170) ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC; ">
      <seq>gcttatccttaaacctgatccgattggcccttccctccacctctcattccctccttctcccttcaccccacaccaccaaaacacccaagatttccaccattctgataagaatcctcaaaacaaaacccaatctttatccctcccacttcactctttggagcagccacattcctgagctaaaagaaaaaacatgtcttgttcaaatttgacaatgttggtgtcctcaaaaccatctctttctgaatcctctgccctttctttccgctctgctgtcagctcttttcagcttcctaaccacaacctatcaggcccttcaaacccctcaagatcatcatcagttatccctgtccgatgtggtctccgtgatctgcgtgatcgaattgactctgtcaagaacacacagaagattactgaggctatgaagcttgtggctgctgctaaagtcagaagagcacaagaagctgttgtgggtgcgaggcctttctctgagactttggttgaggtactttacaacatcaatgagcagctccagacagatgacattgatgtaccactcaccaaagtaagacctgtcaagaaagtggcgttggtggttgtcaccggtgaccggggtctttgtggtggttttaacaactatatcatcaaaaaagctgaggccaggattagagatttgaaagctcttggccttgattacactattatcagtgttggcaaaaagggtaattcttatttcctccgcaggccttacatccctgtagataaatttcttgaaggaagcaatctgcccactgctaaagatgctcaggccattgctgatgatgttttctcatttttcgtgagtgaagaggttgacaaggttgagcttctctacacaaagtttgtgtctttagtgaaatctgagccagtcattcacaccctgcttccattgtcaccaaagggagagatttgtgacatcaacgggaactgtgttgatgcagctgaagatgagttctttaggttgacaacaaaggaagggaaattgacagtggaaagagatgtcatgaggactaagacaactgatttttcagcaatcttgcaattcgagcaggaccctgttcagattcttgatgccttgctgccactttacttgaacagtcaaatcctgagggcattgcaggagtcattagccagtgagcttgcttctaggatgagtgccatgagcagtgcaacagataatgcatctgaattgaagaagaatctatctagagtgtacaacagacagcgtcaggcaaagattaccggagaaatattggagattgttgctggagcagatgccttggtttaagcatatcccctgcaattgtgcttctctgtaggtacaataatgaagtctagacaatttttattttctgcttctcaacctcgtacagactttgtgcacaagaagagaaccacattatattttgtacacaaggccagaccaaacctatatttgtatgtcaatttttttctgctatatttgtaaaacatgaattattgaaagcctgaaatcttcaatccctcgtatagcttttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="6457" stop="8611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6756" g_stop="8311" g_length="1556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1556" r_length="1556" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U581255" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6756" e_stop="8311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATCCTTAAACCTGATCCGATTGGCCCTTCCCTCCACCTCTCATTCCCTCCTTCTCCCTTCACCCCACACCACCAAAACACCCAAGATTTCCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTA</genome_strand>
        <mrna_strand>GCTTATCCTTAAACCTGATCCGATTGGCCCTTCCCTCCACCTCTCATTCCCTCCTTCTCCCTTCACCCCACACCACCAAAACACCCAAGATTTCCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576369" ref_strand="+" ref_description="SGN-U576369 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>caaatacagaagaagaaaaaaatgaaatcaaagatgagaagcagaaacttgagatcttcaatgccgtcgtattatacatatctgaagccaggagcgttagcccaaatcaggaattccaaaatcactgctaaatcaaaagtactgaacaatcctaaaactctaattgtgatgaaccaccaaacatccgattcaggaatcggagtttcacagccagcaccaatcatggagagcgttccttgctttaatttgaagatcaagagcaaccgcccttgctgccttcagaggaagaagctcagtgcagttgcacccattttctatgacccgtctctcgttaccatataatccgctactacagcaaagggtttttcttaaattgaactttttttcttatattacctgttttatttttatttgtgggtaaagtttatgtggcttctgatgaatgtaagtaatgtatttaccttgaattacgacgaagaatagatttggatttggatttgttttttttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="11125" stop="10008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10825" g_stop="10308" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-U576369" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10825" e_stop="10308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATACAGAAGAAGAAAAAAATGAAATCAAAGATGAGAAGCAGAAACTTGAGATCTTCAATGCCGTCGTATTATACATATCTGAAGCCAGGAGCGTTAGCCCAAATCAGGAATTCCAAAATCACTGCTAAATCAAAAGTACTGAACAATCCTAAAACTCTAATTGTGATGAACCACCAAACATCCGATTCAGGAATCGGAGTTTCACAGCCAGCACCAATCATGGAGAGCGTTCCTTGCTTTAATTTGAAGATCAAGAGCAACCGCCCTTGCTGCCTTCAGAGGAAGAAGCTCAGTGCAGTTGCACCCATTTTCTATGACCCGTCTCTCGTTACCATATAATCCGCTACTACAGCAAAGGGTTTTTCTTAAATTGAACTTTTTTTCTTATATTACCTGTTTTATTTTTATTTGTGGGTAAAGTTTATGTGGCTTCTGATGAATGTAAGTAATGTATTTACCTTGAATTACGACGAAGAATAGATTTGGATTTGGATTTGTTTTTTTTTTAGAACATA</genome_strand>
        <mrna_strand>CAAATACAGAAGAAGAAAAAAATGAAATCAAAGATGAGAAGCAGAAACTTGAGATCTTCAATGCCGTCGTATTATACATATCTGAAGCCAGGAGCGTTAGCCCAAATCAGGAATTCCAAAATCACTGCTAAATCAAAAGTACTGAACAATCCTAAAACTCTAATTGTGATGAACCACCAAACATCCGATTCAGGAATCGGAGTTTCACAGCCAGCACCAATCATGGAGAGCGTTCCTTGCTTTAATTTGAAGATCAAGAGCAACCGCCCTTGCTGCCTTCAGAGGAAGAAGCTCAGTGCAGTTGCACCCATTTTCTATGACCCGTCTCTCGTTACCATATAATCCGCTACTACAGCAAAGGGTTTTTCTTAAATTGAACTTTTTTTCTTATATTACCTGTTTTATTTTTATTTGTGGGTAAAGTTTATGTGGCTTCTGATGAATGTAAGTAATGTATTTACCTTGAATTACGACGAAGAATAGATTTGGATTTGGATTTGTTTTTTTTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600609" ref_strand="+" ref_description="SGN-U600609 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gactatgaaatcctccatgagaactagaacttccagatctgcaaccccatcatttcacacattcttgaaaccaggtgcacttgcccagcttagatactccaaaatctcggctaaatcaaggttgaaaaatgctcaatcttatcagcacatacccctttcggtggtaccttcatcccttcctttaccaaccatggaaagccttccctgtttcaattcatcgatccggattcgccagcctcggtttatccagagaaagaagctcagcgccgttgcgcccatttttactgaatccaattcttgatccttcagttgggtgagacgcctccagtttcaaccccggtctgctgttgatcttattggggtttcagattagtaagttatagtgaaaaaatatacataaaaaaaagtgtatctttgttagatcgggagttctttctccccttcaaaaattttaatttggttattttcttggggcctagtattgatgtcggtaagtggggcgaagatcgtttgcagtacattctcttttcatttcaacaaacaaaagatgtagaaatatacagttcatatgaataaagagatctacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="14409" stop="13223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14110" g_stop="13523" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-U600609" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14110" e_stop="13523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATGAAATCCTCCATGAGAACTAGAACTTCCAGATCTGCAACCCCATCATTTCACACATTCTTGAAACCAGGTGCACTTGCCCAGCTTAGATACTCCAAAATCTCGGCTAAATCAAGGTTGAAAAATGCTCAATCTTATCAGCACATACCCCTTTCGGTGGTACCTTCATCCCTTCCTTTACCAACCATGGAAAGCCTTCCCTGTTTCAATTCATCGATCCGGATTCGCCAGCCTCGGTTTATCCAGAGAAAGAAGCTCAGCGCCGTTGCGCCCATTTTTACTGAATCCAATTCTTGATCCTTCAGTTGGGTGAGACGCCTCCAGTTTCAACCCCGGTCTGCTGTTGATCTTATTGGGGTTTCAGATTAGTAAGTTATAGTGAAAAAATATACATAAAAAAAAGTGTATCTTTGTTAGATCGGGAGTTCTTTCTCCCCTTCAAAAATTTTAATTTGGTTATTTTCTTGGGGCCTAGTATTGATGTCGGTAAGTGGGGCGAAGATCGTTTGCAGTACATTCTCTTTTCATTTCAACAAACAAAAGATGTAGAAATATACAGTTCATATGAATAAAGAGATCTACAT</genome_strand>
        <mrna_strand>GACTATGAAATCCTCCATGAGAACTAGAACTTCCAGATCTGCAACCCCATCATTTCACACATTCTTGAAACCAGGTGCACTTGCCCAGCTTAGATACTCCAAAATCTCGGCTAAATCAAGGTTGAAAAATGCTCAATCTTATCAGCACATACCCCTTTCGGTGGTACCTTCATCCCTTCCTTTACCAACCATGGAAAGCCTTCCCTGTTTCAATTCATCGATCCGGATTCGCCAGCCTCGGTTTATCCAGAGAAAGAAGCTCAGCGCCGTTGCGCCCATTTTTACTGAATCCAATTCTTGATCCTTCAGTTGGGTGAGACGCCTCCAGTTTCAACCCCGGTCTGCTGTTGATCTTATTGGGGTTTCAGATTAGTAAGTTATAGTGAAAAAATATACATAAAAAAAAGTGTATCTTTGTTAGATCGGGAGTTCTTTCTCCCCTTCAAAAATTTTAATTTGGTTATTTTCTTGGGGCCTAGTATTGATGTCGGTAAGTGGGGCGAAGATCGTTTGCAGTACATTCTCTTTTCATTTCAACAAACAAAAGATGTAGAAATATACAGTTCATATGAATAAAGAGATCTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565544" ref_strand="+" ref_description="SGN-U565544 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|1911166|emb|CAA64173.1| (e_value=2e-76) soluble-starch-synthase; (*SWP) sp|Q43846|SSY3_SOLTU (e_value=6e-77) Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3; ">
      <seq>aatagatttttaaaaccccattaaagcaaatacctatataattgcagcacagatacagagagagagacgtagtgtgttgatgaaggagaagagagatacttcacatgggatgttgtatttgattctgtggtgaacaagagttttataaagaacattcctttttctttattgcttggttcttgggtgggtcagccatggatgttccattgccactgcatagaccattgagttgcacaagtgtctccaatgcaataacccacctcaagatcaaaccttttcttgggtttgtttctcatggaaccacaagtctatcagtacaatcttcttcatggaggagggatgtaatggttactggggttccatttccattttgtgcaaatttctcgggaagaagacggagaaaagtttcaactcctaggagtcaacaatcttcacctaaggggtttgtgccaaggaagccttcagggatgagcacacaaagaaaagttcagaagagcaatggtgataaagaaagtcaaagtacttcaacatctaaagaatctgaaatttccaaccagaagacggttgaagcaaaagttgaaaccagtgatgatgacactaaaggagtggtcagggaccacaagtttctggaggatgaggatgaaatcaatggttctactaaatcaataagtatgtcacctggtcgtggatcatctcaatttgttgaaagtgaanaaattggngatgatganatgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="17123" stop="18984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17423" g_stop="17742" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17743" i_stop="18168" i_length="426">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18169" g_stop="18226" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="378" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18227" i_stop="18322" i_length="96">
            <donor d_prob="0.286" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18323" g_stop="18684" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="739" r_length="361" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U565544" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17423" e_stop="17742"/>
          <exon e_start="18169" e_stop="18226"/>
          <exon e_start="18323" e_stop="18684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGATTTTTAAAACCCCATTAAAGCAAATACCTATATAATTGCAGCACAGATACAGAGAGAGAGACGTAGTGTGTTGATGAAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAAGTAAATTTGTCTTCTAATCTTCTCACTGAAAACTGTAGTGTGTGTTGTATCCATTTGCACTAACTTGCGGACACATGTAGTAATTATATTAGCAGTTTTCTTGATTTTGAATTCACCCATGTTTCATACTCCCCAATTTCGATTATAATTCTTGCATATATGGAGTAATTTGAGCTCAAAATGCAATCTTGATTGACATTTTCTTATGGGTATTGGAGCTGCGCATTTTGTGTTTACTTGACATCATCAGTATTTGCATATTTGTTGATTCTTGGTGTATGTTAGTGGTCATGGTTCCAGTTAGTTAACTTAAGGTAATTGTTCTTCAGAGTTATTGATGTTATTGGTATGCCAAGTTTATGGTTTCCACCCTTAAAGCAATTTCGATTGTTGATAGTTCTCTTATACCTAATGCTACTTTTGCAGTCTTCTTCATGGAGGAGGGATGTAATGGTTACTGGGGTTCCATTTCCATTTTGTGCAAGTGAGGGTTCATTCCTATGGTTATTTAGTTGTAAATATTGGTCTATGATTGATGCTTGCTATTTGTCAAACTAACTGGAAAGATTGTATTCTGTAGATTTCTCGGGAAGAAGACGGAGAAAAGTTTCAACTCCTAGGAGTCAACAATCTTCACCTAAGGGGTTTGTGCCAAGGAAGCCTTCAGGGATGAGCACACAAAGAAAAGTTCAGAAGAGCAATGGTGATAAAGAAAGTCAAAGTACTTCAACATCTAAAGAATCTGAAATTTCCAACCAGAAGACGGTTGAAGCAAAAGTTGAAACCAGTGATGATGACACTAAAGGAGTGGTCAGGGACCACAAGTTTCTGGAGGATGAGGATGAAATCAATGGTTCTACTAAATCAATAAGTATGTCACCTGGTCGTGGATCATCTCAATTTGTTGAAAGTGAAGAAATTGGTGATGATGACAATGATGCT</genome_strand>
        <mrna_strand>AATAGATTTTTAAAACCCCATTAAAGCAAATACCTATATAATTGCAGCACAGATACAGAGAGAGAGACGTAGTGTGTTGATGAAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTTCATGGAGGAGGGATGTAATGGTTACTGGGGTTCCATTTCCATTTTGTGCAA................................................................................................ATTTCTCGGGAAGAAGACGGAGAAAAGTTTCAACTCCTAGGAGTCAACAATCTTCACCTAAGGGGTTTGTGCCAAGGAAGCCTTCAGGGATGAGCACACAAAGAAAAGTTCAGAAGAGCAATGGTGATAAAGAAAGTCAAAGTACTTCAACATCTAAAGAATCTGAAATTTCCAACCAGAAGACGGTTGAAGCAAAAGTTGAAACCAGTGATGATGACACTAAAGGAGTGGTCAGGGACCACAAGTTTCTGGAGGATGAGGATGAAATCAATGGTTCTACTAAATCAATAAGTATGTCACCTGGTCGTGGATCATCTCAATTTGTTGAAAGTGAANAAATTGGNGATGATGA-NATGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568315" ref_strand="+" ref_description="SGN-U568315 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|1911166|emb|CAA64173.1| (e_value=6e-159) soluble-starch-synthase; (*ATH) AT1G11720.1 (e_value=2e-118)  Symbol: ATSS3 | Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. | chr1:3952511-3957044 FORWARD | Aliases: F25C20.13, F25C20_13, ATSS3, STA... ; (*SWP) sp|Q43846|SSY3_SOLTU (e_value=4e-160) Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3; ">
      <seq>ggataaacggagagagcaggagaaacttgctaaagaacaagctgaaagagagagactagcagaagaacaaagacgaatagaagcagagaaagctgaaattgaagctgacagagcacaaccaaaggacgagactgcaaagaaaaagaaagtattgcaagaattgatggcaaaggccacaaagactcgtgatatcacctggtacatagagccaagtgaatttaaatgcgaggacaaggtcaggttatactataacaaaagttcaggtccactatcccatgctaaggacctgtggatccacggaggatataacaattggaaggatggtttgtctattgtcaaaaagcttgttaaatctgagagaatagatggtgattggtggtatacagaggttgttattcctgatcaggcacttgtcttggattgggtttttgctgatggtccacccaagcatgccattgcttatgataacaatcaccgccaagacttccatgccattgtccccaagcagattccggaggaattatattgggttgaggaagaacatcagatctttaagaaacttcaggaggagagaaggcttagagaagccgctatgcgtgctaaggctgaaaaaacagcacttctgaaagctgaaacaaaggaaagaactatgaaatcatttttactatctcagaagcatgtagtatatactgagcctcttgatatccaagctggaagcagcgtcacagtttactataatcccgccaatacagtacttagtggtaaacctgaaatttggttcagatgttcatttaatcgctggacacaccgcctaggtccattgccacctcagaaaatgttgcctgctgaaaatggcacccatgtcaaagcaactgtcaaggttccattggatgcatatatgatggattttgtattttccgagagagaagatggtggtatttttgacaataagagcggaatggactatcacatacccgtgtttggaggagtcgctaaagaacctccgatgcatattgtccatattgctgtcgaaatggcaccaattgcaaagtaaacccaagaactatggaggatttttttgaacctcaaaggcatctcgtggaccatgcccaggaaggtctcagaggctttaaagagttgggaggcatcagggatgaatgcaaaggacagaaatagatggagaattatccgtgctatatatggtggactatttgaaaagaaaggaactctatgtgttttaagagcatagagaataatgttcagatggtcaagttaaactgcattttattgttacatttctgtataaatggtttcagtacaatcgatgtactgttttgtgatataatccaaggatacctatttcgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="19170" stop="22358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19470" g_stop="19858" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19859" i_stop="20002" i_length="144">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20003" g_stop="20217" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="604" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20218" i_stop="20418" i_length="201">
            <donor d_prob="0.518" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20419" g_stop="20689" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="875" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20690" i_stop="21116" i_length="427">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21117" g_stop="21292" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="876" r_stop="1051" r_length="176" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21293" i_stop="21741" i_length="449">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21742" g_stop="22058" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1052" r_stop="1368" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U568315" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19470" e_stop="19858"/>
          <exon e_start="20003" e_stop="20217"/>
          <exon e_start="20419" e_stop="20689"/>
          <exon e_start="21117" e_stop="21292"/>
          <exon e_start="21742" e_stop="22058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAACGGAGAGAGCAGGAGAAACTTGCTAAAGAACAAGCTGAAAGAGAGAGACTAGCAGAAGAACAAAGACGAATAGAAGCAGAGAAAGCTGAAATTGAAGCTGACAGAGCACAAGCAAAGGACGAGACTGCAAAGAAAAAGAAAGTATTGCAAGAATTGATGGCAAAGGCCACAAAGACTCGTGATATCACCTGGTACATAGAGCCAAGTGAATTTAAATGCGAGGACAAGGTCAGGTTATACTATAACAAAAGTTCAGGTCCACTATCCCATGCTAAGGACCTGTGGATCCACGGAGGATATAACAATTGGAAGGATGGTTTGTCTATTGTCAAAAAGCTTGTTAAATCTGAGAGAATAGATGGTGATTGGTGGTATACAGAGGGTAAGTGGGGATTTTATTATTATAAGTACTTGCACTTCTTTTAGTTAGTGCTTGCATGAGCTTCCACAATTATACTTTGTCTGTCTCCTTTTATTTCTTCTGAATGTTCGGCTACACTCTTCTGAGGAATGTACTTTTCTGCAGTTGTTATTCCTGATCAGGCACTTGTCTTGGATTGGGTTTTTGCTGATGGTCCACCCAAGCATGCCATTGCTTATGATAACAATCACCGCCAAGACTTCCATGCCATTGTCCCCAAGCAGATTCCGGAGGAATTATATTGGGTTGAGGAAGAACATCAGATCTTTAAGAAACTTCAGGAGGAGAGAAGGCTTAGAGAAGCCGCTATGCGTGCTAAGGTTGGTTGTAATGTTCCACTCAAGGTTAAAACTGATTAAGTGGATTTGATGGGTCAAATTTAGATATTCTGTTGTTGTCCTGTTATTCCAAAAGAGAACAAAGACCTCCTAATTTTTTTTTTTGTCTATAGAGTTCTCCTGCAAGTTATTTTCTTATATTACTGAATTCCATTGCTTACCTCTCATATATGTTTCTTCCAGGCTGAAAAAACAGCACTTCTGAAAGCTGAAACAAAGGAAAGAACTATGAAATCATTTTTACTATCTCAGAAGCATGTAGTATATACTGAGCCTCTTGATATCCAAGCTGGAAGCAGCGTCACAGTTTACTATAATCCCGCCAATACAGTACTTAGTGGTAAACCTGAAATTTGGTTCAGATGTTCATTTAATCGCTGGACACACCGCCTAGGTCCATTGCCACCTCAGAAAATGTTGCCTGCTGAAAATGGCACCCATGTCAAAGCAACTGGTTAGTTTTCACGCACTCTGATGTCAGTGTACAAACACTACAGACTGTTCCGTCATCATAGCTTCAACTAGAAATAATTTTCTCTTACGCTTAGTAGTATCTTTAGTATTAAGTATAATTTGAGTTGCAGTTTCTTTCACATATATTTCTCTATTTTTCTAGACAAACGGAAGTTTTCTCTGTAACCGATAGCTAGAATGCTAATTGTCAGCTGAGATGAACATCTTGATATGGGATCCGAGACCTTAGGATTCTAAGAAGTAAGAAAGTAACTTAACTCTCTAATGCATTTATGTGGAGTAAGTTTGAACAACTGATGTATGTAAACATTTAATTACATATAAATATCAATTTTTGTCAAATAAAAACTAGTCTTATCTGAAAAACATCTTCACTTTTGCTTTCCATCTGGCTACTTATGTTTCAGTCAAGGTTCCATTGGATGCATATATGATGGATTTTGTATTTTCCGAGAGAGAAGATGGTGGTATTTTTGACAATAAGAGCGGAATGGACTATCACATACCCGTGTTTGGAGGAGTCGCTAAAGAACCTCCGATGCATATTGTCCATATTGCTGTCGAAATGGCACCTATTGCAAAGGTAGACTTGGGTGATTCCAACTTCTGTTTTATGCTAAATATAATACTTTTGTGCTTTAATTGATACTTCTTCACTGCAATTCAAGATCTGAAGATGTTTCTGTTCCACCAAGGACTATTTGTGCTTAATCCATAGTTTCTTGTAGCTACCTCTCCCCTCCAAGTTAGGTAAAAGTGTCACTTGCTATGCATTTCTAGAGTTGTAAATTTTCCGATGTTTGGCAGTTACAGGCAAACAGTTAGTCAATAAAGGCAGTCCATTTTAATATAAATGATACTCTTGTGCCTTTTATGGTTATTTTGCTTTGAGTTGACCTTTCTCATCAAAAAATGTTTATTCTTTAATATTTGGGGGAGATGGGGCTATTGGGAACTGTAAAGTGAAAAAAAAGGATAATGTTTTCCTGTATTACTTTTTGACTTTATATTAATTTTTTATTTTCCTATTAGTAAACCCAAGAACTATGGAGGATTTTTTTGAACCTCAAAGGCATCTCGTGGACCATGCCCAGGAAGGTCTCAGAGGCTTTAAAGAGTTGGGAGGCATCAGGGATGAATGCAAAGGACAGAAATAGATGGAGAATTATCCGTGCTATATATGGTGGACTATTTGAAAAGAAAGGAACTCTATGTGTTTTAAGAGCATAGAGAATAATGTTCAGATGGTCAAGTTAAACTGCATTTTATTGTTACATTTCTGTATAAATGGTTTCAGTACAATCGATGTACTGTTTTGTGATATAATCCAAGGATACCTATTTCGATTT</genome_strand>
        <mrna_strand>GGATAAACGGAGAGAGCAGGAGAAACTTGCTAAAGAACAAGCTGAAAGAGAGAGACTAGCAGAAGAACAAAGACGAATAGAAGCAGAGAAAGCTGAAATTGAAGCTGACAGAGCACAACCAAAGGACGAGACTGCAAAGAAAAAGAAAGTATTGCAAGAATTGATGGCAAAGGCCACAAAGACTCGTGATATCACCTGGTACATAGAGCCAAGTGAATTTAAATGCGAGGACAAGGTCAGGTTATACTATAACAAAAGTTCAGGTCCACTATCCCATGCTAAGGACCTGTGGATCCACGGAGGATATAACAATTGGAAGGATGGTTTGTCTATTGTCAAAAAGCTTGTTAAATCTGAGAGAATAGATGGTGATTGGTGGTATACAGAGG................................................................................................................................................TTGTTATTCCTGATCAGGCACTTGTCTTGGATTGGGTTTTTGCTGATGGTCCACCCAAGCATGCCATTGCTTATGATAACAATCACCGCCAAGACTTCCATGCCATTGTCCCCAAGCAGATTCCGGAGGAATTATATTGGGTTGAGGAAGAACATCAGATCTTTAAGAAACTTCAGGAGGAGAGAAGGCTTAGAGAAGCCGCTATGCGTGCTAAG.........................................................................................................................................................................................................GCTGAAAAAACAGCACTTCTGAAAGCTGAAACAAAGGAAAGAACTATGAAATCATTTTTACTATCTCAGAAGCATGTAGTATATACTGAGCCTCTTGATATCCAAGCTGGAAGCAGCGTCACAGTTTACTATAATCCCGCCAATACAGTACTTAGTGGTAAACCTGAAATTTGGTTCAGATGTTCATTTAATCGCTGGACACACCGCCTAGGTCCATTGCCACCTCAGAAAATGTTGCCTGCTGAAAATGGCACCCATGTCAAAGCAACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGTTCCATTGGATGCATATATGATGGATTTTGTATTTTCCGAGAGAGAAGATGGTGGTATTTTTGACAATAAGAGCGGAATGGACTATCACATACCCGTGTTTGGAGGAGTCGCTAAAGAACCTCCGATGCATATTGTCCATATTGCTGTCGAAATGGCACCAATTGCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACCCAAGAACTATGGAGGATTTTTTTGAACCTCAAAGGCATCTCGTGGACCATGCCCAGGAAGGTCTCAGAGGCTTTAAAGAGTTGGGAGGCATCAGGGATGAATGCAAAGGACAGAAATAGATGGAGAATTATCCGTGCTATATATGGTGGACTATTTGAAAAGAAAGGAACTCTATGTGTTTTAAGAGCATAGAGAATAATGTTCAGATGGTCAAGTTAAACTGCATTTTATTGTTACATTTCTGTATAAATGGTTTCAGTACAATCGATGTACTGTTTTGTGATATAATCCAAGGATACCTATTTCGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568314" ref_strand="+" ref_description="SGN-U568314 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|1911166|emb|CAA64173.1| (e_value=0) soluble-starch-synthase; (*ATH) AT1G11720.1 (e_value=0)  Symbol: ATSS3 | Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. | chr1:3952511-3957044 FORWARD | Aliases: F25C20.13, F25C20_13, ATSS3, STA... ; (*SWP) sp|Q43846|SSY3_SOLTU (e_value=0) Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3; ">
      <seq>ggaaataaaagtatggtttggaaaggtggaaggactctcggtctattttttggagcctcaaaacgggttattttggaaaggctgcgtatatggttgtagcaacgacggtgaacgatttggtttcttctgtcacgcggctttggagttccttctgcaaggtggatttagtccggatatcattcattgccatgattgggctagtgctcctgttgcttggctctttaaggaacaatatacacactatggtctaagcaaatctcgtatagtcttcacgatacataatcttgaatttggggcagatctcattgggagagcaatgactcatgcagacaaagctacaacagtttcaccaacttactcacaggaggtgtctggaaaccctgtaattgcacctcaccttcacaaggtccatggtatagtgaatgggattgacccagatatttgggatcctttaaatgataagttcattccgattccgtacaccctcggaaaatgttgttgaaggcaaaacagcagcccaaggaagctttgcagaaaaagcttggattgaaacaggctgaccttcctttggttggaattatcacccgcttaactcaccagaagggaatccacctcattaaacatgcaatttggcgtaccttggaacggaacggacaggtagtcttgcttggttctgctcctgatcctaggatacaaaacgattttgttaatttggcaaatcaattgcactccacatataatgaccgcgcacgactctgtctaacatatgacgagccactctctcacctgatatatgctggtgctgatttcattctagttccttcaatatttgagccatgtggactaacacaacttactgctatgagatatggttcaattccagtcgtgcgtaaaactggaggactttatgatactgtatttgatgttgaccatgacaaaaagagagcacaccagtgtggtcttggaccaaatggattcagctttgatggagcagatgctgccggagttgattatgctctgaatagagctctctctgcttggtacgatggtcgaggttggttcaactctttatgcaagcaggttatggaacaagattggtcttggaaccgacctgctcttgattatttggagctttaccatgctgctagaaagttaacgtagttagtttgtgagatagtagcagaaagattcacgagatctgcagtctgtacaggttcagtgtttgcgtctggacaaatgtttatgtcctatatcaaagtataaatcctgtctcctaaagggtcaatagcagacagtactcagttcattcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="22769" stop="34871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23068" g_stop="23133" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23134" i_stop="23801" i_length="668">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23802" g_stop="23907" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="172" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23908" i_stop="25151" i_length="1244">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25152" g_stop="25322" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="343" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25323" i_stop="25846" i_length="524">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25847" g_stop="25975" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="472" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25976" i_stop="29827" i_length="3852">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29828" g_stop="30010" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="657" r_length="185" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30011" i_stop="30416" i_length="406">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30417" g_stop="30548" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="789" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30549" i_stop="30642" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30643" g_stop="30754" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="901" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30755" i_stop="32047" i_length="1293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32048" g_stop="32171" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="902" r_stop="1025" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32172" i_stop="34298" i_length="2127">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34299" g_stop="34578" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1026" r_stop="1305" r_length="280" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1310" polyA_stop="1324"/>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U568314" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>1303</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23068" e_stop="23133"/>
          <exon e_start="23802" e_stop="23907"/>
          <exon e_start="25152" e_stop="25322"/>
          <exon e_start="25847" e_stop="25975"/>
          <exon e_start="29828" e_stop="30010"/>
          <exon e_start="30417" e_stop="30548"/>
          <exon e_start="30643" e_stop="30754"/>
          <exon e_start="32048" e_stop="32171"/>
          <exon e_start="34299" e_stop="34578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATAAAAGTATGGTTTGGAAAGGTGGAAGGACTCTCGGTCTATTTTTTGGAGCCTCAAAACGGGTATGCTTAATGCGAAAATGATGCATAATGTTTTTGTTTTATCAGAAAAAATAAGTGAAACTTGTTGTTTCATGGTTTATAATCAACTTTTGTATGTCTGTTCACTAATCAGTAGCTGTTTATCATAAAGTAAAGAGAAAAGTAGAATGCAATCTAAAGGCAGTCCAAGATGAACTGCTGATCAAGCTCCGTTATCTACTCTCTTTAGTTATCTCGCAAAACAAATAGAAGTATTGCAGCCCTTTTCTCCTAAAGCTTTCTTTAGTTGAATATTAGAAGTTTGTGTGTTCCCTAAATGAAAATCTCATTTCCTGACCATTTTCCTAATTTATATGTTGTTGAACTGCAACCGCCATCACAGGAGTTGGTGGTATTTCTGGAAATGATAGTAAAGAATGGAGAATCAATAATTATATCGAATGACTTACAACTGAATATAGACCCTGCTTCCATCAATTTATTTCCTTTTAGGATCAATGTATATATATACGCTGTTCCACCTTTTCGATGCTTTTATTGTAACAATATAATGGTATGTAGTACAGCAGAACATACAATCATATTCTCAACTATGTGTGCCTGTTTTTTGTTTTCTTTTGATCAAGCATAGGTGAATTAGGCATTTTGGATGTCTTCATAATTTTAGTGCTTCATTATTGTTCTTTTAGGTTATTTTGGAAAGGGTGCGTATATGGTTGTAGCAACGACGGTGAACGATTTGGTTTCTTCTGTCATGCGGCTTTGGAGTTCCTTCTGCAAGGTGGATTTAGTCCGGTATGTTCCAGATTATATCAATATGCTAATTCTGAGGTCTCATATTTTCTTGATTCCTATTTCTCCAAATTTTAATCTTATAAATTTCTTAGGATAATAGCTTATTTGGGAAAGCTATAAATATTTTCTGAAGGAGGCAAGTCGATTGCAGATATTTTATTGTAATAGCATCAGATTCAAATTTTTATGTCAATGAATGAATTGCTAATTACCAAGGAGTATAACCAAGTCGTTTTAATTATTTTGTAATGTGTGTGGTTAGATGTGAGAAAATGGTGTTTTAGAATTCATGAAACTTTCTTTGAGCTAATAAAGATGGTGAAAATGGTGGTTTTGTAAGTTATGTGGGTCCCACCATTATATTTAACGGTTTTGGGGTAAATTGTTAAGTTTAGGATAAAACACTAAATTGAACACATTTTGTCATACATGAAGGACAATTTCAATCACCTAGAGTATTTTAAGGACCAAAATAAAGCAACCCCAATACATTGAGGACCATTTTGATCATTTTCTCTTCCAGATTATATCAATATGCTAATTCTGAGGTCTCATATTTTCTTGATTCCTATTTCTCCAGATTTCAATCTTATAAATTCCTTTGGATAATAGCTTATTTGGGAAAGCTATAAATATTTTCTGAAGGAAGCAAGTCGATTGCAGATATTTTATAGGAATAGCGTCAGATTAGAATTTTTATGTCAATGAATGAATTGCTAATTACCAAGGAGTATAACCAAGTCGTTTTAATTTCTCACTGAAGTTGTTGGATTAATTGGGTCTGCGACATGCTTCCTTGGTCCCAAATTAACTTCTTAAGTTCACCTCGGAGGATTCAAATTGCGAAGAATTCAACAATTAAATTATTCATGACTTAGTCTTTTACAACCAAAAGCTTGATTATTTGATACCATTTTTATCATAATTTTTAATAAGACCAACTATTAGTTTCCAAAGTGTAAGTTTGAGGTGAAATATCATTCTCAAGACACAAAATTAGACATTTTGACCTCTAAATTCAAATTCAAATTCAAACATCTAAAGTGGGAGGGACTGTGTACTACTTTCCTCTTTCTAAATAATTTTCTTCCTACATATTACTGCTTGCTACAATGAATGGGAGCTTTTGGGCACTGAACTGAGGATCTCAAATGTTTCTGTGAAGTGATACGGTTTCTTATATTTTCTGTTGTTGAAATGAAATTTTATTTGCACGTCTTCTCCACTGTTCATTTGTCCGGCAGGATATCATTCATTGCCATGATTGGTCTAGTGCTCCTGTTGCTTGGCTCTTTAAGGAACAATATACACACTATGGTCTAAGCAAATCTCGTATAGTCTTCACGATACATAATCTTGAATTTGGGGCAGATCTCATTGGGAGAGCAATGACTCATGCAGACAAAGCTACAACAGTAAGTGCTTCTATCACCTTTACCTTACAAATGGCTGTTTGTGCTTGATGCTGTTGTCTGTGGAAAAATGGTGCTACGCATACGCCAGAGGCTTTTTGTAATTTGCCAGACAAAAGTTCTGGATTTGAGTTCCTGAAGGTCATCATTTTGTCCAGCTTCCTATTTGTCTCATGTTTGTTTCGCCTTTTCATTTTTCGGAAGAAGATTGTAAATTGCACCCCAGGGAAGAGGCTCTATTTAGCTGCTTTCAGAAACTAGTCTAACAACCAAACACTGCCTGAAGGCCTTCAGCTATGGACGCTGTTGGAGATAAAAGTAAGACCAGACAAAATAAATCTAAAAGGAAAAGCTACACGAAAACATGCTCTTGAAGTATACATAAAGAAAGTGTTATGGGCACCAAGTATACTTCTTTTTTTTGGTTTTATCAAAAAAGAAAAGTATCCTTCTTTGTTTGTTTTAGTGAAACTGTAAAAATTTCTCTATGAAAGGTAAAGCTGTATCCTAATAAGATTTACATGCAGGTTTCACCAACTTACTCACAGGAGGTGTCTGGAAACCCTGTAATTGCGCCTCACCTTCACAAGTTCCATGGTATAGTGAATGGGATTGACCCAGATATTTGGGATCCTTTAAATGATAAGTTCATTCCGGTAAGTTTTCTCGGCTTTTCTCAGTTATTATATCACCTATAAGGGCACACATTGGAATCAGTTCATGCTTTCTTCTCCCCCTTATCTCTCTGCATATAAACTGTCCAACTGCAATTCTTGAAAGTGACCTCCACCCTAAAGAGGTTATTGTAACTGATTATTGGTCAACTGTGGAGTGCAAGGATATCTGATCTCAAAAAAAAGAAGCTTAGTAGTCAACTTACCTTACTTCTTTGCTTGCAAGAAAGGTTGTACAACTCCTAATGCTCTACATAGAACTCTACAAGAAAACTGTTGGATATGCAGAGAATATTTGATCATGAGCAGCAACAACAACACACCCGATGCACTTCCACAGGTGGGTTTGGGGAGGGTAATGTGTACACAAACCTTACCCCTGCCACCTCTACCTTGTGGAGGTAAGGAGGTTGTCTCTGATAGAACCTCGGCTAAAGGATAGCATTTCAAAGATACAAAATGAAGAAGTAACAGTAACAACAACAAAATAATACGATAACTGAAGCATAAGAAACAACATATAATAGAAAACTATGAGAATAATACTACTAGTATGGAAGGAGAAGAAGACACGGTGCTCCAAATACCACCCAGCCTATCCCACAGTAAAATGAGAAAACGGTCAACTACCTACCAACATACTACCTTAATCTGCAACATCCACATCCTCCTATCTAGATCATGTCCTCAGTAAGTTGAAGATGTGTCATGTCCTGCTTGATGAAAGAATCCAGATTCCATACTATGATGTGGGCTGGGGATCTTTCTTCTCTTTCTAAAAGAGAAGATAACAATCACTGGATGTTTGGGCTGCCAGTGCAAAGACATTAAAGCTTTTGTGGATTTTTACCTCATTTTAATTAGCCAATTTCAGAACAAGAAGGCTGCTCCCATTGATACCCAGATATTGTCCTATTTTTGTGTGTAGGTGCATACAGAGGCGACTTTAGAATTTTAAGCATGGGCTATTTGACAAGAATATTGTTCTCTAAAGTGGCACTTGTTTGATTTCTTGTGTATCTGTACATGAGTAGACCAGACCCTTCCTCAGCTATGCTGTGATTGCTGTCATTAGTTGTTAATTTTTTCTATGACCACTTCATCTGTTAGGCTTAGAATCTTTTGGTGATCACTACATTTGACTCTTTTAACTGTGTTAGTCTTTTGTGTGTCTTGGTGATTATTCCTTCAAGTAACTTTTGGTGTGATTATTCTGAAGCTAGATGTGCACTTAACTTGTTCAGTTGGAAAAACTTCAACTACTGTAAATAGCACTGAACAATTTTTTAATTTTGTTAGCACCCTACTCCTAGCATGGTCTTTCTCATGTATTGGAGCTAACACACTTCTTTTGCATCTTTTGATGACTTTTTAATGAAATTTCTCACTTCATAGAAAAGATAGTGTGGAGAAACTGCCAACCACCTATCTAGGCATGCCTTTGGTAGCAGTCATGAAGCCTTTGAAATATGGGACGGTATCCCAGAGAAGATTGAAAGGAAGCTATCAAGAAGACTCAGTATCTTTCTCGAGGGGGAAGATTGATTCTTGTAAATTCTGTTCTTGACTCTTTACTCACTTTTGTGATGTCCTTATTCCCAATTCCAGCAAAAGTAGAAGAACATTGGACAAGTTAAGGAGAAACTTTCTATGCGAGGCAGCTATAATTTAGTTAACTGGAAGACCGTAATCCTTAGCAAAGATAGAGGGGGGCTGGGAATTAGAAACTTGAGATTGCAAAATGAAAGTCTGCTGAAAAAGTGGTTGTGGAGGTACACTGAGGAGGGAAGTGCTCTCTGTAAAGAGGTGATTAAAGCTATGTATGGTGAATTAAGCCCTTGGTGAACAGAGAACACAGTTGAACCTTATGGTGTGGGAGTATGGAGAACAATCAGAAACCTGTGGCCCCAAATGGAAGCAGAATTGTTTATCAAGGTGGGAAATGGCAATAAATTAGATTTTGGAAGGATATTTGGATAGAACAATCCTCCCTTAGCGATCTCTTCCCAGATCTCTTTCAAATCTCTGAGAATCCTGATGCTAATGTAAATGATTGTTGGACAGAACAGGGATGGAATTTAGTATTTAGAAGATTTCTCAATGATTGGGAGGTGGAAAGGGTTGCAGAGTTGCTAGGGAAGTTAGGTGAATGAGAATAGACACAAATGCCACAGACAGGGTGCTATGGAGGCACAAAAATGATGGTCTTTATACAGTTAGCAGTGCGTACAGAAGAGGTCTCCAACTGATGGCAGGAGATCCAAACCATCAATGGAACTATTTTTGGACTACAAAAGTGAAATGTTTCACTTGGCTAGTGATAGAGGGTTTGTTTAACACAGGAAGTATTACAGAAGAAGGGTAGACAAATGGTTCCCAGATGCTTTTTGTGCAATTTGACAGGAGAAACAAACAAATCACCTTTTCTTGCACTGTAACTTTACCAAGCAAGTCTGGAATTTATTTCTTAGCATTTCAAATCTGAATTGGACAATGCCAAAACATACATCAGAGTTGCTGAAGAGCTGGGTAAGGAGAGGAGGCAGCAAGAGCCAAAGGAGATGGTGGAGGTTAATACCATCATGTATATGGTGGTCAGCTTGGAAGGAAAGGAATGGTAGATGTTTTGAAAATAGATACAATTCCATTCACAAGGTCAAATGGAATTGTATAGTATCCTTACCTTTTTGGTGTAAACAGTTGTGTATAGTAGATACAGACCAGATTGTAGATTTGATAGGAAGCTTGTAACTAACACTTTTTGGTGGAGACAAGCATGCCCTTAATGCTGAAGAATACAATCTTACCAGTTTCAAAAAAACAAAAAAAAAAAGAAATAAACCTTAGACCTAACACAGTCCCCAAAGCTAGTTCATGAGATGAGGATTCCCCAAGATCATAAAAGGAGACATAATCCCATCCCAAAACTATATCAGACTCTTAGCACTCACACTCGCAATAGTGGACATTTGGAGCTTGGATAATAGAACATGGGTACCCGACATCAGGTAAACGAAGAATTGGAATGGGTCTGGCTCACCTAACTCAACCCTATAAGTCAGCTAATGAGGTAAGGATTGCCCAATACCATATAAAGAGGCAAATATTCCATTCCATATCAATGTGGGACCCTATCAAACAGTTTGTGTTAGCACATAATACACCTCCAGTAGTCTTACCTCTGAAAGTTATGATGTTTATCTACATTTATTGGTTTGCTATTCCCATCATCCCAATATGAGGGTGTTTTATAAAGACTTTGAAACTTGTGTAAAACATGCCAGACATTTATGTGGCTATAAATCACTTCATTAAGGGTAAAATGATTTTTTTAAAAGTTAAATTGTATCTAAATAATTGGTAGTAGAGGGTCAAACGAAAACTGGTGGGTGACGATTCCAGCATGTATCTGGTGGACACTAAGGAAGTAAAGGAATGCCAGATGTTTTGAAGAGTAGCAACATTCAGAGATAAAGCGTCAGAGTCTTAGTTTGCTGTATTTTTGGTGTTAACAAGAGTTGGGGATATAGTAGCACTAGTTGGCTTCATATGTAACTTGTAAAGTTCTTCTATTTTTGCAATTCTTAGATTCTTCCTCATCGTTTCTTGGATGATGAGTTTTTTGTGAATACAAAGTTACCATTGTCTCCAAAAAAAATTGCATCTAATATAAAAAGGTTCTTCTTTTTGGGACACTAAAAAGGGAAGTGTCACATATATGGAGTATTATATTTGGTTATTGTGAGGTTCATTCTTATTGTAGCTTTAAGTTCTTGGATCTTAAATCATGTTTATTTGATGGTTGTCGCACTGTTGAAATGCATGCTATTACAGATTCCGTACA-CCTCGGAAAATGTTGTTGAAGGCAAAACAGCAG-CCAAGGAAGCTTTGCAGCAAAAACTTGGACTGAAACAGGCTGACCTTCCTTTGGTAGGAATTATCACCCGCTTAACTCACCAGAAAGGAATCCACCTCATTAAACATGCAATTTGGCGTACCTTGGAACGGAACGGACAGGTATTTTCTCTGAAGGTGTTCTTAAGTTCTCAGATCCCCCCTTCTTCTTCTCTTTTGCTTGGGGGAGGGGGGGACTATGGGGAACATACTCATCTTCAGCTTTTGGCTGGTCGAGATGTTGCTATATGCTCTGATAATAACTAGTGTAATTTTTTTTTTAAAAATCATTTGGTTTCGGATGTCATGTCTAGTTTGTATATAGTAACTGATTACTGATCTAAGATGCCAGAGAGTACCTGTTTATTATTTTTTACTTTAAAAAATCCAGAGAACACCAGCTCTTGAATGTTTTCGTTACCAATTTTTGCATCTTGTTCTCTCAAGTCTTATTCTTAATGGAGTCCCATTTTAGAAAGTCTATTTTAGCAGAATGGTATGATCTTCTATTGACAAAAAGCTCTGACAGGTAGTCTTGCTTGGTTCTGCTCCTGATCCTAGGATACAAAACGATTTTGTTAATTTGGCAAATCAATTGCACTCCACATATAATGACCGCGCACGACTCTGTCTAACATATGACGAGCCACTCTCTCACCTGGTATTGTTTCTCCTTTCCTTGCTTGTTGCATATTTTTGTCTTCAAGCCTTATGTGTACCTTTTTATTATATCATTCCTTTTGATACAATTGCAGATATATGCTGGTGCTGATTTCATTCTAGTTCCTTCAATATTTGAGCCATGTGGACTAACACAACTTACTGCTATGAGATATGGTTCAATTCCAGTCGTGCGTAAAACTGGAGGTACCTTTTTCTTATGACCTATATTTTTAGAAATTTGAATATCTTTCCATGGTGCTGCTTGCTTAGTACCTCTCTGCCACTTGCACTGTATGCTCAGATATGAAGGTAGAGCAACTCACTCTAGCGAAGTTTCTCTCTCTCATGACCATAATGTTCCCTTTTTTTAATGATGTGACCATCTTTTTGGAACTACAGGTGCATATATATGAATGACTATTTTTGATTTGGTTGAGCCATAATTAAATAATAGCGCCTTTTTTCAAAAAACTTACTTTCAGATGAGGTAGTTACACAATTCAACATGGTGGCAAAGTTGATAGAGCTTTTGGGATCATGTTCCACTACTACCCATTAAACAAAAATAAAGTTTAGTATCACCCATTATCAAAAATCAGAAGGTATCTCTGCATGCTTGGACCATCAGACCCTCATGTATGAGAACAACATTATAACCATAATTCATAAAATATTACTTAATAAAAGAAGACAATAATTCCTTATTAAGAATAAAAAGAGACGGTAATTAATTAAAAAAAACTGTTTTCCCCTAACAATTTTTAAGCTTTTAGATGTGGAGATTACTGTTATGGTCCCCTGTTATGGATCTAATTATGGGACGCTGCAAGATAAAATCTAAAGTTCTCTTTTTTCTACCTATAGTGCTGGTTCATTAAGCTGCGATCTCTTGAGTTTGAAGTACTCAAAAACTTGACTAATTTTCTGCTTAACATTTCACTGAATCAAATACATTAAATACAACACTGAAACAAGGAAAATAACTGTCTACTGCCTACTACAACTGAATGAGAAAGTGGAGAAATAACCTCCTACTGCAACAACTCCTACCTAGAAATAGGAAAAATAAATAACTAAAAAGCTGTAATAATCTACTACAAACACTGCTGGACAGAAATAAAAAATAAGTAACTTATAAGCTGAAGAATTCTACTTCCGAATTTCCTTAAATATTCCATGTGTAGACCATTGGTAGACTAAAAGGGTGCTAACAATCATCATACACTACAGCAGTTTTCAGTCTCTTGTAACATTGCAACTGCAGATATTTATGCCGATCAGAATGTTTTAATTGTAGTTTCCTCTTTTAGTAGCGAATTTACTTGATGTTTATTAGACTCACAAAAATTATTGCATTCTCTTGAATTAAGTGGGAGAACAAATATTTTTTGCACATGGTAGAATTTTCTTTTGATGCCGTTGGCTTAGTTATTATTTAGCAGATCCTAATCATTTTCTTCTGAATGTGTGTTCTAACCTCTGCATTCTGTATATTAGGACTTTATGATACTGTATTTGATGTTGACCATGACAAAGAGAGAGCACAACAGTGTGGTCTTGGACCTAATGGATTCAGCTTTGATGGAGCAGATGCTGCCGGAGTTGATTATGCTCTGAATAGGCAAGTATAGTTGCTTTGTTTCTATTAAGGTTTTTTAGTCTTTTAATTTTTAAAGGGAAACTGAAGCAAGTGTGATGGCATACACATATTGAGAGATCAAAGTCTAAAGAATGTTGCAACAGTTATATCTGAACTCTTAAAATCCTGCCCTATTTTCCCCTATTTCTTTTTCAACAACACCAGACATAAGGATCTTTTCCTCCAAATTTTCAACGTATCTCCTTAAAAGATGTGAGGACTGGACAGCCCTAGCAGACTTCTATAAACTTGCTGAGATATTGAATTTTTATCAATTCAATTTTTTAAAATTCTAATTTGAGGAAAGGAGGGATACAGGGGCGTGCTGTAACAGGGAAAGGGAGAACAATCTGGTAATCTGTCTTCAGTTTCAGAGTTTCCATTTTCTTATGCTTGCTTACAAGAGAATGAGGGAACAACTTTTTTAACAAGAGAAAATGACCAAAAGAACTATTCTGAATTTTTTTTGTACTGAAAATAACCAATTGTTTTCTGTTGAAGTCCCAAGAGGAATATGCTACTAGTAATTCTCCCCTTTCTTAGTGTTAGAGAATACACTTGTCCTTCATATACTGTGTAAGGGTTTCTTAAGGGTTTAAGGTCCTGGGGCGCTCCACCCTTTCATTGAGGTTTTGGGTTGGATGTTCATATTTATTCGCATGGTATCAGAGCCATACCCGTTCCTACTCTTTGTTTACCTAATGGATGGCCCCCTATGTTATATCGTCCACGCTCCAGATGTCCAGGACTAAGTTTACATGTCTTTTTGAGCAATTCTCGCTTTATGAGTTAACTTTTGACGTTGAATTAGGCCCTAGGTTTGTTTCATTTAAATTGGAATCAGAATTAGATCAATCGTTATCTTTGGTTTTATCCAGTTTTGTGCTCTCATGTATTGGCGTCCAGACTCCATCTATCCGACCTTGGTTGTGCGCGGGAGTGGGATGTGTGTGTTTGCGTGTGTGTTAAGTGTCCATACTGGTTGAGGATCTGCTTTGTCTCATTATATGGTTTTGGACATCTCATGGGCTATCTTTTGAGGGTGAGGTAGGCTTGAGGTTCATTTTCTTTACATGCTAGCATAGCATGTTGTCCTGCTCGATTTTCTCCTCATACTCTACTGCTCAGGGCTTTTCTCTCTCAAAGAAGTCCATGGAGCCACTAACAATGCTCCCTGGTGCCCCTGTCCCTTCCCTCTCATTGGCCTGTTGGCCTAACCAGTCTCCGGATACTTTAGGCCCACTTCTGTTGAGCCTCCTCTTGAGCGTCCCTCCATAATAAAAATCTTTAGTCCATGTGTAACCCAAGAACCAAGTTACACATGTGAGAGATTCACCTTTCACTTTTCTCTTGTAAATGCCATGTGGCCTTCAAATTTACTCTCTTCCTCCTCTCGACTGAAGAAACTCCAGGAAAGCCACTGTCTTAGTGCCCCTTCTCAATGTTCCCAGATGGAGAAAGAAGAGCAGCACAAACCATCTTAAAATTAGTCGACATTCAGCTACTTCTATGAGGATCCTCCACCCAATTTATGCTATCTTTGCATCCATATGATATATATAAAGAAAATAATTAAGCCCAGTCATCGTAGCAATGATGGATTTTTCACTGTGGGCATTCAGATCGTAAGCGTCCCAGAGCTGAACTTCAATTGCAAGAATGATTTAGGAAAGCTCGATGACATTCATGGTGGAACCATCCTACGCTAGCCTTGGTGATTGCGGCACTTGGTTACTTTTATGGGAATACATTAGTTTGGCGATTTGCTTCTCATTTTCTTGTTTCATTCTTGAGAATTCGAGATCATTCGTTATTATAAGCTTTTTCACGGGGAGACGTGGGGGTGGGGGGCAGTGTGTTTGCTGTCAAATAGTAGTTAGTTTTGAAAATAGAACTGCTCAAATGTAGAAAAAAACAAACTTGTGGATAAGCATTGTTATTGGAAATGACAATATGAAGTGTGGAACTTGGAGTGAATTGCCATAACTGCGGGTGGATATATTATTTTTCTTTGCACCATGTTTTTCCATCTTATGCAAACCCTAAGATGCATACTTCCTTCCCCTTCTCCTCGTTTGTTGATATCTCACTTACGGTTCTGTGTTTCAGAGCTCTCTCTGCTTGGTACGATGGTCGAGATTGGTTCAACTCTTTATGCAAGCAGGTTATGGAACAAGATTGGTCTTGGAACCGACCTGCTCTTGATTATTTGGAGCTTTACCATGCTGCTAGAAAGTTAACGTAGTTAGTTTGTGAGATAGTAGCAGAAAGATTCACGAGATCTGCAGTCTGTACAGGTTCAGTGTTTGCGTCTGGACTGCTTTTTATGTCCTATAACAAAGTATAAATCCTGTCTACCCTGAGATCGATAGCAGACAGTACTCAGTTC</genome_strand>
        <mrna_strand>GGAAATAAAAGTATGGTTTGGAAAGGTGGAAGGACTCTCGGTCTATTTTTTGGAGCCTCAAAACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGGAAAGGCTGCGTATATGGTTGTAGCAACGACGGTGAACGATTTGGTTTCTTCTGTCACGCGGCTTTGGAGTTCCTTCTGCAAGGTGGATTTAGTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCATTCATTGCCATGATTGGGCTAGTGCTCCTGTTGCTTGGCTCTTTAAGGAACAATATACACACTATGGTCTAAGCAAATCTCGTATAGTCTTCACGATACATAATCTTGAATTTGGGGCAGATCTCATTGGGAGAGCAATGACTCATGCAGACAAAGCTACAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACCAACTTACTCACAGGAGGTGTCTGGAAACCCTGTAATTGCACCTCACCTTCACAAGGTCCATGGTATAGTGAATGGGATTGACCCAGATATTTGGGATCCTTTAAATGATAAGTTCATTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCGTACACCCTCGGAAAATGTTGTTGAAGGCAAAACAGCAGCCCAAGGAAGCTTTGCAGAAAAAGCTTGGATTGAAACAGGCTGACCTTCCTTTGGTTGGAATTATCACCCGCTTAACTCACCAGAAGGGAATCCACCTCATTAAACATGCAATTTGGCGTACCTTGGAACGGAACGGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTCTTGCTTGGTTCTGCTCCTGATCCTAGGATACAAAACGATTTTGTTAATTTGGCAAATCAATTGCACTCCACATATAATGACCGCGCACGACTCTGTCTAACATATGACGAGCCACTCTCTCACCTG..............................................................................................ATATATGCTGGTGCTGATTTCATTCTAGTTCCTTCAATATTTGAGCCATGTGGACTAACACAACTTACTGCTATGAGATATGGTTCAATTCCAGTCGTGCGTAAAACTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTATGATACTGTATTTGATGTTGACCATGACAAAAAGAGAGCACACCAGTGTGGTCTTGGACCAAATGGATTCAGCTTTGATGGAGCAGATGCTGCCGGAGTTGATTATGCTCTGAATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTCTCTGCTTGGTACGATGGTCGAGGTTGGTTCAACTCTTTATGCAAGCAGGTTATGGAACAAGATTGGTCTTGGAACCGACCTGCTCTTGATTATTTGGAGCTTTACCATGCTGCTAGAAAGTTAACGTAGTTAGTTTGTGAGATAGTAGCAGAAAGATTCACGAGATCTGCAGTCTGTACAGGTTCAGTGTTTGCGTCTGGACAAATGTTTATGTCCTATATCAAAGTATAAATCCTGTCTCCTAAAGGGTCAATAGCAGACAGTACTCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571788" ref_strand="+" ref_description="SGN-U571788 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|26452217|dbj|BAC43196.1| (e_value=5e-20) unknown protein [Arabidopsis thaliana]; (*ATH) AT4G04630.1 (e_value=6e-22) | Symbol: None | expressed protein, contains Pfam profile PF04520: Protein of unknown function, DUF584 | chr4:2331675-2332798 REVERSE | Aliases: F4H6.15, F4H6_15; ">
      <seq>cataactctaaaaaaaaataaaatattcacatttttttttcctttgttttttactattcaaagaaaaattaaactttgttttagagcagaggaagattccttataccattctgttttatcctcttctttttttcttaatgattcctcaaaataccaaaaaacaaacatccctttctcttagctataaatagttgttaggcttcccctttttagtacttccaccctaaacaaaaaccaaagtcccaaactttttcattctttaagagatctaattagaaccaaagaatggatgagtttaatagcaacagaaacagaggaaaaacagagaaagatggagactttgaagaagaagatgtatggggttatgtgaatgaaagagattcatcaacagtgattcttccaagaggaaaaagtacgtcgcataagtcatcatcttcatcaagtcctgttaagattccagaatggttcaagaatagcaataacaagaaatcaagaagaagagttagtactatcataacagaggatgattcttctttctcatcagttacttatcctggaaatgtcgtggtcgaagaagaagaagatgattatggtgatggaatagtgccaccccatgaatatatagcaagaagagtagcaaggaatcaaatagcttcattttcaatgatggaaggtgttggaaggactctcaagggaagggaccttagcaaattgaggaatgccattttaactaagacaggttttttggaatagctagctagcacctacttagtattattataagtataaactaacaaaattaggtcatccatttttcatcaatcatcacatcttattatcatttagtttagtatcataagttctcattatgtttaaagtatggccttcttatttttagctcagagatgcaatttttgggatttttcctttattggaaaaaaaaagaaaagcaggctctgggattttgtttgggaggtttataggagtatatgcttttgtattctgtatatgaaatatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="37955" stop="39573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38255" g_stop="39273" g_length="1019"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1020" r_length="1020" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U571788" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1019</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38255" e_stop="39273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAACTCTAAAAAAAAATAAAATATTCACATTTTTTTTTCCTTTGTTTTTTACTATTCAAAGAAAAATTAAACTTTGTTTTAGAGCAGAGGAAGATTCCTTATACCATTCTGTTTTATCCTCTTCTTTTTTTCTTAATGATTCCTCAAAATACCAAAAAACAAACATCCCTTTCTCTTAGCTATAAATAGTTGTTAGGCTTCCCCTTTTTAGTACTTCCACCCTAAACAAAAACCAAAGTCCCAAACTTTTTCATTCTTTAAGAGATCTAATTAGAACCAAAGAATGGATGAGTTTAATAGCAACAGAAACAGAGGAAAAACAGAGAAAGATGGAGACTTTGAAGAAGAAGATGTATGGGGTTATGTGAATGAAAGAGATTCATCAACAGTGATTCTTCCAAGAGGAAAAAGTACGTCGCATAAGTCATCATCTTCATCAAGTCCTGTTAAGATTCCAGAATGGTTCAAGAATAGCAATAACAAGAAATCAAGAAGAAGAGTTAGTACTATCATAACAGAGGATGATTCTTCTTTCTCATCAGTTACTTATCCTGGAAATGTCGTGGTCGAAGAAGAAGAAGATGATTATGGTGATGGAATAGTGCCACCCCATGAATATATAGCAAGAAGAGTAGCAAGGAATCAAATAGCTTCATTTTCAATGATGGAAGGTGTTGGAAGGACTCTCAAGGGAAGGGACCTTAGCAAATTGAGGAATGCCATTTTAACTAAGACAGGTTTTTTGGAATAGCTAGCTAGCACCTACTTAGTATTATTATAAGTATAAACTAACAAAATTAGGTCATCCATTTTTCATCAATCATCACATCTTATTATCATTTAGTTTAGTATCATAAGTTCTCATTATGTTTAAAGTATGGCCTTCTTATTTTTAGCTCAGAGATGCAA-TTTTGGGATTTTTCTTTTATTGGAGAAAAAAAGAAAAGCAGGCTCTGGGATTTTGTTTGGGAGGTTTATAGGAGTATATGCTTTTGTATTCGGTATATGAAATATGAA</genome_strand>
        <mrna_strand>CATAACTCTAAAAAAAAATAAAATATTCACATTTTTTTTTCCTTTGTTTTTTACTATTCAAAGAAAAATTAAACTTTGTTTTAGAGCAGAGGAAGATTCCTTATACCATTCTGTTTTATCCTCTTCTTTTTTTCTTAATGATTCCTCAAAATACCAAAAAACAAACATCCCTTTCTCTTAGCTATAAATAGTTGTTAGGCTTCCCCTTTTTAGTACTTCCACCCTAAACAAAAACCAAAGTCCCAAACTTTTTCATTCTTTAAGAGATCTAATTAGAACCAAAGAATGGATGAGTTTAATAGCAACAGAAACAGAGGAAAAACAGAGAAAGATGGAGACTTTGAAGAAGAAGATGTATGGGGTTATGTGAATGAAAGAGATTCATCAACAGTGATTCTTCCAAGAGGAAAAAGTACGTCGCATAAGTCATCATCTTCATCAAGTCCTGTTAAGATTCCAGAATGGTTCAAGAATAGCAATAACAAGAAATCAAGAAGAAGAGTTAGTACTATCATAACAGAGGATGATTCTTCTTTCTCATCAGTTACTTATCCTGGAAATGTCGTGGTCGAAGAAGAAGAAGATGATTATGGTGATGGAATAGTGCCACCCCATGAATATATAGCAAGAAGAGTAGCAAGGAATCAAATAGCTTCATTTTCAATGATGGAAGGTGTTGGAAGGACTCTCAAGGGAAGGGACCTTAGCAAATTGAGGAATGCCATTTTAACTAAGACAGGTTTTTTGGAATAGCTAGCTAGCACCTACTTAGTATTATTATAAGTATAAACTAACAAAATTAGGTCATCCATTTTTCATCAATCATCACATCTTATTATCATTTAGTTTAGTATCATAAGTTCTCATTATGTTTAAAGTATGGCCTTCTTATTTTTAGCTCAGAGATGCAATTTTTGGGATTTTTCCTTTATTGGAAAAAAAAAGAAAAGCAGGCTCTGGGATTTTGTTTGGGAGGTTTATAGGAGTATATGCTTTTGTATTCTGTATATGAAATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582045" ref_strand="+" ref_description="SGN-U582045 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|115475149|ref|NP_001061171.1| (e_value=4e-49) Os08g0191600; (*ATH) AT1G62040.1 (e_value=3e-50) | Symbol: None | autophagy 8c (APG8c), identical to autophagy 8c (Arabidopsis thaliana) GI:19912155; contains Pfam profile PF02991: Microtubule associated protein 1A/1B, light chain 3 | chr1:22936566-22938088 FORWARD | Aliases: F8K4.23, F8K4_23; (*SWP) sp|Q6Z1D5|ATG8C_ORYSJ (e_value=2e-50) Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C; ">
      <seq>gctcaaaacggcaccgtgttgacctttaaagacaccgcacgacctcgtattattgatccgacaaattctcaccgaacagagttggaagcgaaacaaatacttgtaaatggagtttccttgtgaatccaaactttctccaattcattagcaataaaacctcttcaatttatcccctttagatacccagaaattgttcaaaaaccctcttcaattattcgactttcttcttttctggtaggatcaaagtttcagtcttgtcatggccaaaagttctttcaagcttgaacaccctttggagaggaggcagtcagaatcttctcgcatccgagagaagtatcctgatcgaattccggtgattgttgagaaggcagagaagagtgatgtccctgacatcgataaaaagaaataccttgtcccagctgatttgactgttggtcaatttgtttatgtggtgcggaagaggatcaagctcggtgcttcaaaggccatctttgtctttgtcaagaacactttgcctccaacagcttctctgatgtctgcaatttatgaggaaaataaagatgaagatggatttctctacatgacatacagtggagaaaacacatttgggttcgttgagcttggaaattaatatctcaaatgtaaatctgacatttccttgatctcatcatgaacagttaactgtagttgttggtttgcattccacataaaatcaaatttatattcctctttggaatatccttataacttacagatgttcaactcttgatctcttatcttatagtgcctttcgtttaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="47638" stop="51021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47937" g_stop="48170" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48171" i_stop="48305" i_length="135">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48306" g_stop="48367" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="296" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48368" i_stop="49367" i_length="1000">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49368" g_stop="49423" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="352" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49424" i_stop="49516" i_length="93">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49517" g_stop="49569" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="405" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49570" i_stop="50253" i_length="684">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50254" g_stop="50372" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="524" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50373" i_stop="50444" i_length="72">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50445" g_stop="50721" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="801" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U582045" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47937" e_stop="48170"/>
          <exon e_start="48306" e_stop="48367"/>
          <exon e_start="49368" e_stop="49423"/>
          <exon e_start="49517" e_stop="49569"/>
          <exon e_start="50254" e_stop="50372"/>
          <exon e_start="50445" e_stop="50721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAAAACGGCACCGTGTTGACCTTTAAAGACACCGCACGACCTCGTATTATTGATCCGACAAATTCTCACCGAACAGAGTTGGAAGCGAAACAAATACTTGTAAATGGAGTTTCCTTGTGAATCCAAACTTTCTCCAATTCATTAGCAATAAAACCTCTTCAATTTATCCCCTTTAGATACCCAGAAATTGTTCAAAAACCCTCTTCAATTATTCGACTTTCTTCTTTTCTGGTACGTTTTAAAGATACCCTTTTGCGTGAATTGAACTTTTTGATGATTTCTATTGTTCATTACAATGTATATTTGTGTGTAATTTTTTAGGGTTTTCTTGGATTCTGGTGGTGTTTATCTGTCTGAATTTTGCAGGTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGGGTAATTGTTTTTCTTTCTAATTCGTTTTTTTTTTTATTGTTTTACTTATACTACAAGAAGTTTCATTGTGTGTATGGGTTCTTGTTTATGTGTCTTTCTTGAAGTTTCTTGGATGATCATAGTTTAATTATTTGTTGTTTCGACCATGCTGAAAAAATCCTACCCTTCCTAGAACCCCACTTTGTGAGATTACACCGGCAATCTAGTTGTCATGCTGAAAAACTTGATTGGGTATTGGGATCATTCCTGGGATATGTTGTCGGGTTTCTTGATATTGATACGCACTTGCCCTCTTGCATTCAAGTTGTTCGATGTTGTTAATTCTTCTGGTGATGTTTTTAGGTTTCTAAACTTGTTTGATTCTTTATATGGTGAGGCAACCATTGAGACATGAACTTTTTGGGGTGCATATATGAACTGTTTGAAGGTGCATATACGAGGTTTATCTCCCTTCATTGACATTTATACTTTCTAGTGCTTGAAGCTTGTTTTATACTTTCTAGTGCTTGAAGCTTGTATTTTTACAGTTTAATGACCTTCTCTGGGAAAAATCTCATACTTGAAGCTATTATCCTGTTATATTGGTCTATGTCATGTTTTTATTCTATCTGAGTATGGCGATATCTGGTTTGAGAATTTTGGGTTGGAAAATTATCCTTTGAGTGTTCCCTGTGGCTTGAGTCTCCAAAAAAAGTTATTCAGCATGCTCTCTTGGAACAAGCTTATTTTACATTTATGCTATTGTCATGTTAGAGTTAGCATTATTGGCTTCATTACTTTATAAATACGAAAAATGTGCTATTCTTTTGCTGAGATTTGACTTATTGGTCAAAAAAAGTTATGTATTCTTTTGAATTATAAGTTTATGTGCTCGAAGGTTATTTTTCAACTTTTCCAGATTTCTCCCGAGTGTATCCCCATTTCTTGCAAATATCAAACAAAAAAGCAAGTATTTTGTGGTGTAAATTCTGATGATTCCAAAATTTGGTTTTGGTTATAGAGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCGGTATGATCTTTGTTATCCCAAGAAATTCTTGGCATTAAGTCACACGTAGTACTCTTTGTAGCTTCTCTCTGACATTCATGTTTCCTATTTTAGGTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAAGTAAGTTGCTACTTTTCTCTTTTACTTTATTTATGCCTTAGATGTTCACTTTTTAGAATCAAGTGCTTTTCTGAGCTTTTATCCTAAGGTAATTAAATCCACAAAATCCAGTTATATTTATTGTGTTTTGGCATGTGATGTAGGTGTTGCATCATTTTGATCAACTCTTTGGTTTTTTGAAAACTGGAATATGCATGTTTTTGCTGTCTTGTTTGTCATAATTAGTCTGAGATAAGGATTTTTATCATGGGAATTCGGTGGTGGTTATACTTTATGAATGCTGCAATCTTCTCAAGATATCTTGATATTCTTCTTTCTTACCAATTTATCAGATGGGGGGAACTGTTTTTAATACCAATAACCATTAGGAGAATCGGCCACATGGGTTGGTTGGAGATGCTATGCTTTCTTGATAAATTGAAAATACAGAATTCAACTAAGGTGTTGTCCTTACTTGAGGTTCTTGTAACTAAATGATTGTATGCATGTCCTCACTTTCTTTCCATGTAGAAATGGAATTGTGTGTGGAAATTGCTGGCGAGAATGTCAAGTGTTCGTTAGTGGTCAAGGTGTTGATAGCATCCAACACTGTTGTTGTCTTTTATGGATCTAACACATGAGGATATAAGTTTGAATTGCTGTAGCTGCTCTAGTAATTCTCAATTGTCTTAACTTGTGATGCAGATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACTTTGCCTCCAACAGGTAAGCAGAGAGATGGTGTTATTTCATTTACTGGTTAGGATTGTTGTATAATTACATCTTCTTTCTTTTCAGCTTCTCTGATGTCTGCAATTTATGAGGAAAATAAAGATGAAGATGGATTTCTCTACATGACATACAGTGGAGAAAACACATTTGGGTTCGTTGAGCTTGGAAATTAATATCTCAAATGTAAATCTGACATTTCCTTGATCTCATCATGAACAGTTAACTGTAGTTGTTGGTTTGCATTCCACATAAAATCAAATTTATATTCCTCTTTGGAATATCCTTATAACTTACAGATGTTCAACTCTTGATCTCTTATCTTATAGTGCCTTTCGTTTAAATC</genome_strand>
        <mrna_strand>GCTCAAAACGGCACCGTGTTGACCTTTAAAGACACCGCACGACCTCGTATTATTGATCCGACAAATTCTCACCGAACAGAGTTGGAAGCGAAACAAATACTTGTAAATGGAGTTTCCTTGTGAATCCAAACTTTCTCCAATTCATTAGCAATAAAACCTCTTCAATTTATCCCCTTTAGATACCCAGAAATTGTTCAAAAACCCTCTTCAATTATTCGACTTTCTTCTTTTCTG.......................................................................................................................................GTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCG.............................................................................................GTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACTTTGCCTCCAACAG........................................................................CTTCTCTGATGTCTGCAATTTATGAGGAAAATAAAGATGAAGATGGATTTCTCTACATGACATACAGTGGAGAAAACACATTTGGGTTCGTTGAGCTTGGAAATTAATATCTCAAATGTAAATCTGACATTTCCTTGATCTCATCATGAACAGTTAACTGTAGTTGTTGGTTTGCATTCCACATAAAATCAAATTTATATTCCTCTTTGGAATATCCTTATAACTTACAGATGTTCAACTCTTGATCTCTTATCTTATAGTGCCTTTCGTTTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574334" ref_strand="+" ref_description="SGN-U574334 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>gcgataaccttttctccaaagaagaataaataatgtttgcttcaagagaaagtaaccttgtgagttcgctagcaagtcttctataaaaggaacacacaggatttatggctagtgatggaccaagttgggcagatcaatggggtgcaggagggataggtgccatggatgaagatgacagctattataaaagcaacaaagacagtgaaaacaacaagaaagccactagttcatcttcatcaggaattggcaaagtcaaagctgtggcagtggctggtgcacagaaagtgaaaaatggtccttccatgttgatcaaatgggttaggagcaaatcccagaagaagcatccctccatttcatgaaatgaggaggatcaaggattatctaatctttatcttgccttctgtaagaggatttcagatcaaacatgtctatttatgcgttgttatgcttcctggtagtagtttgtttccgggtgagtttaaggtcatggtgtaaagaatatgtatgcaatcagattactaataaggtaattacaattgttctctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="52165" stop="50883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51867" g_stop="51769" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51768" i_stop="51633" i_length="136">
            <donor d_prob="0.094" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51632" g_stop="51183" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="549" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-U574334" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51867" e_stop="51769"/>
          <exon e_start="51632" e_stop="51183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAACCTTTTCTCCAAAGAAGAATAAATAATGTTTGCTTCAAGAGAAAGTAACCTTGTGAGTTCGCTAGCAAGTCTTCTATAAAAGGAACACACAGGTTTAAGAGACTTATCCTTGGGCGCTCCTCTTATTAGTTCTACCACTTACAAGCAGTAATAAAGTAAAATCCCCAGCCCCTTCTCTGTTTTCTCTTTTATTCTTTACAAAATCATCTTATATTGTGTTGTTGACAGGATTTATGGCTAGTGATGGACCAAGTTGGGCAGATCAATGGGGTGCAGGAGGGATAGGTGCCATGGATGAAGATGACAGCTATTATAAAAGCAACAAAGACAGTGAAAACAACAAGAAAGCCACTAGTTCATCTTCATCAGGAATTGGCAAAGTCAAAGCTGTGGCAGTGGCTGGTGCACAGAAAGTGAAAAATGGTCCTTCCATGTTGATCAAATGGGTTAGGAGCAAATCCCAGAAGAAGCATCCCTCCATTTCATGAAATGAGGAGGATCAAGGATTATCTAATCTTTATCTTGCCTTCTGTAAGAGGATTTCAGATCAAACATGTCTATTTATGCGTTGTTATGCTTCCTGGTAGTAGTTTGTTTCCGGGTGAGTTTAAGGTCATGGTGTAAAGAATATGTATGCAATCAGATTACTAATAAGGTAATTACAATTGTTCTCTCTCT</genome_strand>
        <mrna_strand>GCGATAACCTTTTCTCCAAAGAAGAATAAATAATGTTTGCTTCAAGAGAAAGTAACCTTGTGAGTTCGCTAGCAAGTCTTCTATAAAAGGAACACACAG........................................................................................................................................GATTTATGGCTAGTGATGGACCAAGTTGGGCAGATCAATGGGGTGCAGGAGGGATAGGTGCCATGGATGAAGATGACAGCTATTATAAAAGCAACAAAGACAGTGAAAACAACAAGAAAGCCACTAGTTCATCTTCATCAGGAATTGGCAAAGTCAAAGCTGTGGCAGTGGCTGGTGCACAGAAAGTGAAAAATGGTCCTTCCATGTTGATCAAATGGGTTAGGAGCAAATCCCAGAAGAAGCATCCCTCCATTTCATGAAATGAGGAGGATCAAGGATTATCTAATCTTTATCTTGCCTTCTGTAAGAGGATTTCAGATCAAACATGTCTATTTATGCGTTGTTATGCTTCCTGGTAGTAGTTTGTTTCCGGGTGAGTTTAAGGTCATGGTGTAAAGAATATGTATGCAATCAGATTACTAATAAGGTAATTACAATTGTTCTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588783" ref_strand="+" ref_description="SGN-U588783 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gagagactcagttgaatgaccactatgagaatggataatccaagaacaatagtataggagattcaaagttagatactccttaatatctacaaactatactagaaattagcaagtaatagaaagaaagaaaaaaaacagagtagttgatcgaatcacatcaaatgttaaaagaattactagtattaagacagtcacttagttctcctagtagacttggatttcttcattttcctatttttcacatcaaaactactccaactatatccaccaggtattgcaaatggctctgcctgttgtgctccattgcagctctcctgtggcagcttgctagttgaacacgaccggctattgctcctcgacagccacgaagatgacgatgaagacaatgatgaaggaagggaataataattgtttcctgaactttcatcctcagtatcaccaccatgaaggaggtgccttggacttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="52474" stop="53542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52774" g_stop="53242" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U588783" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52774" e_stop="53242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGACTCAGTTGAATGACCACTATGAGAATTGATAATCCAAGAACAATAGTATAGGAGATTCAAAGTTAGATACTCCTTAATATCTACAAACTATACTAGAAATTAGCAAGTAATAGAAAGAAAGAAAAAAAACAGAGTAGTTGATCGAATCACATCAAATGTTAAAAGAATTACTAGTATTAAGACAGTCACTTAGTTCTCCTAGTAGACTTGGATTTCTTCATTTTCCTATTTTTCACATCAAAACTACTCCAACTATATCCACCAGGTATTGCAAATGGCTCTGCCTGTTGTGCTCCATTGCAGCTCTCCTGTGGCAGCTTGCTAGTTGAACACGACCGGCTATTGCTCCTCGACAGCCACGAAGATGACGATGAAGACAATGATGAAGGAAGGGAATAATAATTGTTTCCTGAACTTTCATCCTCAGTATCACCACCATGAAGGAGGTGCCTTGGACTTGAAA</genome_strand>
        <mrna_strand>GAGAGACTCAGTTGAATGACCACTATGAGAATGGATAATCCAAGAACAATAGTATAGGAGATTCAAAGTTAGATACTCCTTAATATCTACAAACTATACTAGAAATTAGCAAGTAATAGAAAGAAAGAAAAAAAACAGAGTAGTTGATCGAATCACATCAAATGTTAAAAGAATTACTAGTATTAAGACAGTCACTTAGTTCTCCTAGTAGACTTGGATTTCTTCATTTTCCTATTTTTCACATCAAAACTACTCCAACTATATCCACCAGGTATTGCAAATGGCTCTGCCTGTTGTGCTCCATTGCAGCTCTCCTGTGGCAGCTTGCTAGTTGAACACGACCGGCTATTGCTCCTCGACAGCCACGAAGATGACGATGAAGACAATGATGAAGGAAGGGAATAATAATTGTTTCCTGAACTTTCATCCTCAGTATCACCACCATGAAGGAGGTGCCTTGGACTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588784" ref_strand="+" ref_description="SGN-U588784 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157328523|emb|CAO21232.1| (e_value=3e-44) unnamed; (*ATH) AT1G62050.1 (e_value=1e-34)  Symbol: None | similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:At1g11740.1); similar to ankyrin repeat protein-like [Oryza sativa (japonica cultivar-group)] (GB:XP_468329.1); contains InterPro domain Ankyrin (InterPro:IPR002110... ; ">
      <seq>tctcttttacaaagacgtcacagcagtttcactcgagaggaaagggattacgttaccgtttctcgaagaagcgttgacattattccggaaccacggcggagagcggcggcgataccggttgcaccaccgccaaatacgaaggagaaggaatatgtgaagagccttaaaccgtccgtttggttaacagaggaattcccgttgaagacggaagagttgctgccgttacttgacatattagcgaacaaagtgaaagccgttagacgaatgagagagctgttaaccaccaagttccctccggggacattttcagtcaagttggcaataccagtggtccctacagtgagggtagtaatcacattcacaaagtttgtagagttacaacccattgaacagttctacactccattttcaagtccaaggcacctcctttatggtggtgatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="54178" stop="52903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53886" g_stop="53572" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53571" i_stop="53334" i_length="238">
            <donor d_prob="0.737" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53333" g_stop="53203" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="446" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-U588784" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53886" e_stop="53572"/>
          <exon e_start="53333" e_stop="53203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAACAAACAAAGACGTCACAGCAGTTTCACTCGAGAGGAAAGGGATTACGTTACCGTTTCTCGAAGAAGCGTTGACATTATTCCGGAACCACGGCGGAGAGCGGCGGCGATACCGGTTGCACCACCGCCAAATACGAAGGAGAAGGAATATGTGAAGAGCCTTAAACCGTCCGTTTGGTTAACAGAGGAATTCCCGTTGAAGACGGAAGAGTTGCTGCCGTTACTTGACATATTAGCGAACAAAGTGAAAGCCGTTAGACGAATGAGAGAGCTGTTAACCACCAAGTTCCCTCCGGGGACATTTCCAGTCAAGGTAAGGGGTAAAATTGATTTTTCACATTCGAAATTCAGAGGTCCCACGAGATTCTCATTTCTTCTGATGAAAGCTTTGATATTGTGTTTGTGTTTTTTCCCTCTTTATTTCTTCTTTTCATGCCCAAGTGTCTGTTTTGCTTCAGCTCCTTGTCACACTTTTTTTTTTTGTTTAGTGTTCAACGCAAAGAACCTTCCTGGGACCCAATTTAATTATAATTTATATTACTGATTGACAGTTGGCAATACCAGTGGTCCCTACAGTGAGGGTAGTAATCACATTCACAAAGTTTGTAGAGTTACAACCCATTGAACAGTTCTACACTCCATTTTCAAGTCCAAGGCACCTCCTTCATGGTGGTGATACTGA</genome_strand>
        <mrna_strand>TCTCTTTTACAAAGACGTCACAGCAGTTTCACTCGAGAGGAAAGGGATTACGTTACCGTTTCTCGAAGAAGCGTTGACATTATTCCGGAACCACGGCGGAGAGCGGCGGCGATACCGGTTGCACCACCGCCAAATACGAAGGAGAAGGAATATGTGAAGAGCCTTAAACCGTCCGTTTGGTTAACAGAGGAATTCCCGTTGAAGACGGAAGAGTTGCTGCCGTTACTTGACATATTAGCGAACAAAGTGAAAGCCGTTAGACGAATGAGAGAGCTGTTAACCACCAAGTTCCCTCCGGGGACATTTTCAGTCAAG..............................................................................................................................................................................................................................................TTGGCAATACCAGTGGTCCCTACAGTGAGGGTAGTAATCACATTCACAAAGTTTGTAGAGTTACAACCCATTGAACAGTTCTACACTCCATTTTCAAGTCCAAGGCACCTCCTTTATGGTGGTGATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562707" ref_strand="+" ref_description="SGN-U562707 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157328521|emb|CAO21230.1| (e_value=2e-134) unnamed; (*ATH) AT1G11790.1 (e_value=2e-129) | Symbol: None | prephenate dehydratase family protein, similar to gi:2392772 and is a member of the PF:00800 Prephenate dehydratase family. ESTs gb:T21562 and gb:T21062 come from this gene | chr1:3981247-3985214 FORWARD | Aliases: F25C20.4, F25C20_4; (*SWP) sp|P43900|PHEA_HAEIN (e_value=3e-40) P-protein OS=Haemophilus influenzae GN=pheA; ">
      <seq>atctttctagtggtcaacatgatggttcaaatgtgcgagttgcttatcagggaattccaggtgcatatagtgaggcagctgcacttaaagcatacccgaaatgtgaaactgtcccatgtgatcagtttgaggctgcatttaaggcagttgaattatggttagtagacaaagctgtactcccgattgaaaattcagttgctgggagcatccatcgtaactacgatctactccttcggcataggctgcatattgtgggagaagttcagttgcttgttaaccactgccttctgggcttgccaggaatcaggaaagaggaattaaagcgcgtcgtgagccaccctcaggcacttgaacaatgcaacattatgttgaatgagttaggcgttgcaaggctcagtagtgatgatacttccagtgctgcacagatagtcgcatctgaagggaagagagatactggagcagttgcaagtgctcgagctgcagagatttatgggctcagcattcttgctgaaagaattcaggatgatccagataatatcaccagatttctgatactagcgagggagcccataatttcgggaactgataggccatataagactagcattgtcttcactttggaagaaggacctggagttctattcaaggccttagcagtttttgctctgagagaaatcaacttaacaaagattgaaagcagaccacaaaaaaagcgccctttaagggtaatagatgactccaacaaaggaagtgccaagtactttgactacctcttttacattgactttgaagcatcgatggcagaccctcgtgctcaatatgcttttgagcattttcaggaatttgcaagattcattcgagtttttgggtgctatcccatggacaaaaatttatgattgcttatttttcagaagtatattataggagattcaacttgtagaggagttgttcaacttaaattgttgtatgtgtattatttgctgggaacttccagtccagtaggccattgttgtgcctgccctgtgctttcatattctttccatttgcattttagaaaatttgttggttcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="66712" stop="73238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67012" g_stop="67061" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67062" i_stop="67201" i_length="140">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67202" g_stop="67294" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="143" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67295" i_stop="67383" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67384" g_stop="67584" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="344" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67585" i_stop="67804" i_length="220">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67805" g_stop="67885" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="425" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67886" i_stop="67949" i_length="64">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67950" g_stop="68045" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="521" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68046" i_stop="70016" i_length="1971">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70017" g_stop="70094" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="599" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70095" i_stop="70167" i_length="73">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70168" g_stop="70257" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="689" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70258" i_stop="70336" i_length="79">
            <donor d_prob="0.838" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70337" g_stop="70404" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="757" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="70405" i_stop="72128" i_length="1724">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="72129" g_stop="72210" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="839" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="72211" i_stop="72703" i_length="493">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.908" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="72704" g_stop="72938" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="840" r_stop="1074" r_length="235" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U562707" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1074</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U562707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67012" e_stop="67061"/>
          <exon e_start="67202" e_stop="67294"/>
          <exon e_start="67384" e_stop="67584"/>
          <exon e_start="67805" e_stop="67885"/>
          <exon e_start="67950" e_stop="68045"/>
          <exon e_start="70017" e_stop="70094"/>
          <exon e_start="70168" e_stop="70257"/>
          <exon e_start="70337" e_stop="70404"/>
          <exon e_start="72129" e_stop="72210"/>
          <exon e_start="72704" e_stop="72938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTAGTGGTCAACATGATGGTTCAAATGTGCGAGTTGCTTATCAGGTAGACAACAAAGACCTCCATGCTCTTAACTTTTAACTCATTTCTTAAGTGAGATTCCTTATAGACTAATCTTCTCTTAACTTTTTAACTCATTTCTTAAGTGAGATTCCTTATAGACTAATCTTCTTTATCTAACGTAGGGAATTCCAGGTGCATATAGTGAGGCAGCTGCACTTAAAGCATACCCGAAATGTGAAACTGTCCCATGTGATCAGTTTGAGGCTGCATTTAAGGTATTTTTTTTGTAAAACCAAAGTGATTTTGTTCCTGAAGATATTTTGCATCTTTTCACACCTTTATAGTATTAGTTCTCATTTCTCAGGCAGTTGAATTATGGTTAGTAGACAAAGCTGTACTCCCGATTGAAAATTCAGTTGCTGGGAGCATCCATCGTAACTACGATCTACTCCTTCGGCATAGGCTGCATATTGTGGGAGAAGTTCAGTTGCTTGTTAACCACTGCCTTCTGGGCTTGCCAGGAATCAGGAAAGAGGAATTAAAGCGCGTCGTGAGCCACCCTCAGGTTATCGTTTCATTTCATTATTCAGAAGAATCTGATGTTTCTCCTTGTTAAACTAAAAAGATGTAGAAATTATTGGATTAGCTTTTGGGTTGAGTTAGACACGAGCTCCTTTTTGATAAATTAAAATAGAAACAGTTACTTCCTTTAGTTTTGCACATAGAATTTATATTGCTTCCATTTCTACTTGGTAAATACTAATACAACCATAACTTGCTTTCAGGCACTTGAACAATGCAACATTATGTTGAATGAGTTAGGCGTTGCAAGGCTCAGTAGTGATGATACTTCCAGTGCTGCACAGGTATTCCATTAAATTTTCTCATCCTCGGCGGGTTTTATTTCCACATTATTTGACACCTCAACAGATAGTCGCATCTGAAGGGAAGAGAGATACTGGAGCAGTTGCAAGTGCTCGAGCTGCAGAGATTTATGGGCTCAGCATTCTTGCTGAAAGAATTCAGGTTAGGATTTTGCATTTCTAAGGTTCTCCCTTTTGTATTTACTCGATGTAACATTGCATCTTTTGAAATTGCACTTGACTGTCTTTTTAATAATTTATTTCTTGAGCCATGTCACCAACGTTGTGGGCACTCATGACTTGAGAGTATGGATATCCAGTGCGCTTACACGTTCATAAAATAACAGCATTTTCATAGTTTGCATATCGACCAATAACTTTCTAGAAGATCATCGCTTATCTTTGATATGGAAACCTATGATGGTTTCTGGTCTTTTCGTTTTTCCTCGCTGTAGTTTAATCCTATGTAAGAACTGTTACAAAATGTGATACGTAGTTTCCAGAAGGTATAGTTTGCTGACTTTGCTCACTCCTTGTCTCTATCTTCACATGGAACCATAAGCAATTTCAAGATTAAGAGCTAGCAACATGGATGGATGGATTTTTTTTATTCTTTATTCTTAATTTATGGATGGGATAGAATGATAAAAAATCAGATCATGAATAGTTATTGATTTAATCTTTGGCTTATAAAGAAACATTATACATTGTACTGCTCATTCAGACTGTAATGAGCAGCAAATACATTTCCTTTAAGGAACTTGCATGGTGTCAAAATTAGGATGTTTTCATTTTGATAAACCTAGGAAAATAAAGAATGATTTTTCAGAAGCAACTTCAACTGTGAACCAGTCTGCTAAAATATTTTATACCTGTTCGTAAGTGTTTGGGCTCAAATCCACCCATGCATGCTTCGCCTAGCTGGTTGTGAACCAGAGAAATTAGGAGTATGGTAGATCAATGGCCAGTGAAAAAATAGTTAAACCACGAAGATGGTGATTGGGGTTTGGCAAGGTTATTCCAGGATCACCAATATCTTCCTTGTCATAAACACAGCACCAATATAGGTAGTTTGGTTGCAGATAATAATGGTTCTAAGTTTTGAGTTCAAAATCATAGCTGTATTTGAAACTTTTGAGCGTCATTTTTTGCTGTGTTCTGCTGCAGGAGATTAGGGGAATATGGTACTCTTATTTCTACATGATTTTCTCCTTCCACTACTGAGTTTTTCTCTTCCTCTAATCTGCTTTGGATACTTTGAATGGAATTATGTGGATTTCAGAATATGAAGAAGAAGCCTTGGTTTGTGCAGTTACAAGATAACAATTAAAATTTGTCTGGATGGGCCAGTGTTGACAAAATAGAAAAGAACTTAAAAAAAGATGAAAGGTCTGCTGGAGCTTTAAATGCAAATAAAGCGTGAACATCAATAAAATAACCGCCAAGGGAGAAAAAAAAATATAACTGTTTAGTTTAAGGCTAAGACGACACTGAAGCACTCATTAAGCAAGATGGAAGTGCTCAACACGTTTTGAGCCTCGCTTTAGGGCTTAAGCACGTCTTTGACAATAATGGGATGGGCTAATAGAAGTTTTAGCATGATGCGTCTTTGTGTTTATTATTACGACTGCCTTATAAATCTAAGTCGGATCCTCCAAAAATGCCACTGCACACGTGTCGAATTGTAAACCTTATCCCCATCAATGAAGTTGAATAGTAACTAGTAAACTTTGAATATTTAACTAATTAAACGTAAAAGGTCGTCATAATTACACAATAATCAATAGCCATTTAACTTAATTAAATAGAAATCGAGTCAAATTATATTGTTGACCAAAACTATTACAATAATTCTGTCAAGTCCTAAAATTTATGTGATGACGAATCTGGCCTCTAGATCTACACTTGTATTGGCACCGAACATCATAGTTTATTAAGGCAGTCTGAGAATTAGTTCTCAACCATAGAAGATATTTATAAGTCTTTTCTCTGCTTTTGCGTCTTTATCAACTTGGTTCTGCTCTTGACCAAGCTGGTGCAGCTAAAAACTGCAAAGCTATTAGCCAAATATATTTGCTATAATCTGCTGTGAAACTTCAGTAATGTGATTTTTAATTGCATGACCAATAACCAGGATGATCCAGATAATATCACCAGATTTCTGATACTAGCGAGGGAGCCCATAATTTCGGGAACTGATAGGCCATATAAGGTAATATCATATTCTTCTTCATTGAACTTATTTTGTTCATACAAAGAATTGATGTTCCCTTTTCATTTTCTAGACTAGCATTGTCTTCACTTTGGAAGAAGGACCTGGAGTTCTATTCAAGGCCTTAGCAGTTTTTGCTCTGAGAGAGATCAATTTAACAAAGGTATTTCTGTTGGAAAAGCTTTTGTAGTTCCCTTCTCTAGTTAAAAGGCTCTGATACATGTTCTGTTGCATTCATACAGATTGAAAGCAGACCACAAAAAAAGCGCCCTTTAAGGGTAGTAGATGACTCCAACAAAGGAAGTGCCAAGTGAGTCTTAAATCTGTTTATTGCGCTAAGAACCATGGAATAGTAACTGAAACCATGTCGGCTTTGTTTCATTTGTCTTTTCTGCTCTGGATATCTTTGATTTGTAATCCCTGGTTCCCATTACCATTATTTGTTGCCACTATTCAGTTAATTTTTTTTAGAAATATAAGCTTGAACTCCCCGTGTATGAGTTTCGCAAAGTACAGCTAACCCCACATCCAAATAAAGGAGGGTTTCAGTGGGTTAAAAGACAATGTAAAATTTGATGTATTGAGTTTGATGGTGTCATTCTTGAATTCAATATTGTTTGTGAATCCTTTAGATGTTGAATTCGTGAATAGAGTGGAATGACTATATTGGGTTCATCACCGACTCCTACTAGTTTGGAATTGATCATAGTTGATTGATTGATGTAATAGTTCTTCAAAATTCAAAGTTGACTTTATGCCCACAACTTAGCTAATTTCTTCTTAAAGAAAAAAGAGATTTCGTAAAAATCATCTTTTTGGGTGTGTTTGGTAGGGAGGACAGCATTTTACAGAAAATGTTATCTAATTTACCCGTGTTAGGTTGGTCATAATGTTCTGAAAAATATCTTTTTAGGAAAATGACTTTCTTGGTGGGAGTAGGGAAAACAAGTTCCATAAGCGGCAATGCACGCTCATTATCTCCGCCACACTCCTAACACCCCAACCACTCACCCTCCAACCCACCATTGTCCCCACACCCATCCCATAGTATTTTCCTAGATTATGTTTTAAATGTTTTTAGAAGAATTTTTTTTGCTTACTTACCAAACAACAAAAATAAGTAGTTTAAGAAAACATTTTCTAGGAAAACACTTCCCGTCTTAACATTTTCCTTTGTTTCATTTGCAATTGTGAGAAAAAATAAAAAATTATTGTAAGGTGTATTTAACTAGTTCCCTCCCTCCCTACAATATATTTGTTATTATGACCTTGCCCCACTCCATGACCCACACTACTTCAAGGTTGTGGTTACTGAAGCATGTAGATAAAGCAACATAATTTGGAGGAAAGATGGATCTTCAAATTAGTGAATTTAGTCCTTTCGTCTGGTATAGGTATGATATGCTACTATAGAGGTCCTTGATAGCATAGTGTACTTCTAATTTTCTGTTGTCTAACTTGTTAAAGTTATATGTATCTATAATATATGGCTTTATAAATTGTTCAAGTGCCCAAGGCTTAGCCAAAAAAGAAGAAAAAAATAGTTCAAGTGCCTTGAAAACAAAGGGTATCTATCGCACAAGTCATTGAGATGGCTGTGTTTGTTTATCCTTTTCACTTTGCTGGGGAAGAGAAGAGTGGAATTGGAAGTTTTGAATTTGTGTTCATCCTTGTTTAATAGAAGAAGCAAAAGAATTAGAGTGGATAACTGCACCCATTAATGTGACCATATTTAGTTACTCACCACTTCCTTTTCAAACTATATATTTATTTCACAATACAACCTTCTCTTTATTATAAAATCTTCTTCTTTCCCACTTTTCCAAACCATAGATGTTGTTTAGTCATAGCAAGATTGAAAAACATCCAGTAGCTCCAGTCCCTTAATTTTTCTGGCTGAAGAAACAAGTGCAAGATGATCCTTTATGTTTACACACCGGCACATGTTGCCTCTTCTCATGGCTAGGGTATATTTGAGGTTGGCCTACTTGTGTTTCTGTGGAACTTAAGAAAGTGATTAAATTTTGATGGCAGGTACTTTGACTACCTCTTTTACATTGACTTTGAAGCATCGATGGCAGACCCTCGTGCTCAATATGCTCTTGAGCATCTTCAGGTTAGTACAACAATCTCTAATATGACCCCTCAGCCAGAAAACAAGTTGCTAAGGTAGCTCTATTACCATTTACATGTGTTGTCTTGTTGCTATCTTGTGCCACCTGTTCGTCACTTGATCTTCCAAATGCATTTACTATTTATTAATATCAACATCAGTTGTTGCCTTCTTGCCTTTCTTGTTTTTAGAGTTCTTGGCAACAGAATTGATATCAACATCATGTGCTATTTCTTTGGTTGCTCATTCTATTCCTTTTTGTGCAATAGAAACCTGTTGGTATGTGTATAATAGACACACACACTCACACATATTTCCAAATGTGGACAGTGCAGATTCCTATATCCGACCCCAACTTGGTTTGGGAATGAGGCATAATGCTGTTGGCTTTCCTCCTATTTGATATCCTCTCTTTGCAGCTTGTATATTATGGTCTGCCATGCTGGCAGAATTTGAAGACCACGTCTCTAAATCTCCTAATGTTTCTTCAATGCAGGAATTTGCAAGATTCATTCGAGTTCTTGGCTGCTATCCCATGGACAAAAATCTATGATTGCTTATCTTTCAGAAGTATATTATAGGAGATTCAACTTGTAGAGGAGTTGTTCAACTTAAATTGTTGTATGTGTATTATCTGCTGGGAACTTCCAGTCCAGTAGGCCATTGTTGTGCCTGCCCTGTGCTCTCATATTCTTTCCATCTGCATTTTAGAAAATTTGTTGGTTCAGTTT</genome_strand>
        <mrna_strand>ATCTTTCTAGTGGTCAACATGATGGTTCAAATGTGCGAGTTGCTTATCAG............................................................................................................................................GGAATTCCAGGTGCATATAGTGAGGCAGCTGCACTTAAAGCATACCCGAAATGTGAAACTGTCCCATGTGATCAGTTTGAGGCTGCATTTAAG.........................................................................................GCAGTTGAATTATGGTTAGTAGACAAAGCTGTACTCCCGATTGAAAATTCAGTTGCTGGGAGCATCCATCGTAACTACGATCTACTCCTTCGGCATAGGCTGCATATTGTGGGAGAAGTTCAGTTGCTTGTTAACCACTGCCTTCTGGGCTTGCCAGGAATCAGGAAAGAGGAATTAAAGCGCGTCGTGAGCCACCCTCAG............................................................................................................................................................................................................................GCACTTGAACAATGCAACATTATGTTGAATGAGTTAGGCGTTGCAAGGCTCAGTAGTGATGATACTTCCAGTGCTGCACAG................................................................ATAGTCGCATCTGAAGGGAAGAGAGATACTGGAGCAGTTGCAAGTGCTCGAGCTGCAGAGATTTATGGGCTCAGCATTCTTGCTGAAAGAATTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCCAGATAATATCACCAGATTTCTGATACTAGCGAGGGAGCCCATAATTTCGGGAACTGATAGGCCATATAAG.........................................................................ACTAGCATTGTCTTCACTTTGGAAGAAGGACCTGGAGTTCTATTCAAGGCCTTAGCAGTTTTTGCTCTGAGAGAAATCAACTTAACAAAG...............................................................................ATTGAAAGCAGACCACAAAAAAAGCGCCCTTTAAGGGTAATAGATGACTCCAACAAAGGAAGTGCCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTGACTACCTCTTTTACATTGACTTTGAAGCATCGATGGCAGACCCTCGTGCTCAATATGCTTTTGAGCATTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGCAAGATTCATTCGAGTTTTTGGGTGCTATCCCATGGACAAAAATTTATGATTGCTTATTTTTCAGAAGTATATTATAGGAGATTCAACTTGTAGAGGAGTTGTTCAACTTAAATTGTTGTATGTGTATTATTTGCTGGGAACTTCCAGTCCAGTAGGCCATTGTTGTGCCTGCCCTGTGCTTTCATATTCTTTCCATTTGCATTTTAGAAAATTTGTTGGTTCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588818" ref_strand="+" ref_description="SGN-U588818 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|148909434|gb|ABR17815.1| (e_value=4e-41) unknown; (*ATH) AT1G08250.1 (e_value=2e-40) | Symbol: None | prephenate dehydratase family protein, contains similarity to prephenate dehydratase GI:1008717 from (Amycolatopsis methanolica) | chr1:2588854-2590298 REVERSE | Aliases: T23G18.10, T23G18_10; ">
      <seq>atctttctagtggtcaacatgatggttcaaatgtgcgagttgcttatcagggaattccaggtgcatatagtgaggcagctgcacttaaagcatacccgaaatgtgaaactgtcccatgtgatcagtttgaggctgcatttaaggcagttgaattatggttagtagacaaagctgtactcccgattgaaaattcagttgctgggagcatccatcgtaactacgatctactccttcggcataggctgcatattgtgggagaagttcagttgcttgttaaccactgccttctgggcttgcctttattcttgaaagaggaattaaagcgcgtcgtgagccggcgtcaagcaacttaaacaatgcaacattatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="66712" stop="68129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67012" g_stop="67061" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67062" i_stop="67201" i_length="140">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67202" g_stop="67294" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="143" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67295" i_stop="67383" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67384" g_stop="67584" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="344" r_length="201" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67585" i_stop="67804" i_length="220">
            <donor d_prob="0.975" d_score="0.80"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67805" g_stop="67829" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="370" r_length="26" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U588818" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67012" e_stop="67061"/>
          <exon e_start="67202" e_stop="67294"/>
          <exon e_start="67384" e_stop="67584"/>
          <exon e_start="67805" e_stop="67829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTAGTGGTCAACATGATGGTTCAAATGTGCGAGTTGCTTATCAGGTAGACAACAAAGACCTCCATGCTCTTAACTTTTAACTCATTTCTTAAGTGAGATTCCTTATAGACTAATCTTCTCTTAACTTTTTAACTCATTTCTTAAGTGAGATTCCTTATAGACTAATCTTCTTTATCTAACGTAGGGAATTCCAGGTGCATATAGTGAGGCAGCTGCACTTAAAGCATACCCGAAATGTGAAACTGTCCCATGTGATCAGTTTGAGGCTGCATTTAAGGTATTTTTTTTGTAAAACCAAAGTGATTTTGTTCCTGAAGATATTTTGCATCTTTTCACACCTTTATAGTATTAGTTCTCATTTCTCAGGCAGTTGAATTATGGTTAGTAGACAAAGCTGTACTCCCGATTGAAAATTCAGTTGCTGGGAGCATCCATCGTAACTACGATCTACTCCTTCGGCATAGGCTGCATATTGTGGGAGAAGTTCAGTTGCTTGTTAACCACTGCCTTCTGGGCTTGCCAGGAATCAGGAAAGAGGAATTAAAGCGCGTCGTGAGCCACCCTCAGGTTATCGTTTCATTTCATTATTCAGAAGAATCTGATGTTTCTCCTTGTTAAACTAAAAAGATGTAGAAATTATTGGATTAGCTTTTGGGTTGAGTTAGACACGAGCTCCTTTTTGATAAATTAAAATAGAAACAGTTACTTCCTTTAGTTTTGCACATAGAATTTATATTGCTTCCATTTCTACTTGGTAAATACTAATACAACCATAACTTGCTTTCAGGC-ACTTGAACAATGCAACATTATGT</genome_strand>
        <mrna_strand>ATCTTTCTAGTGGTCAACATGATGGTTCAAATGTGCGAGTTGCTTATCAG............................................................................................................................................GGAATTCCAGGTGCATATAGTGAGGCAGCTGCACTTAAAGCATACCCGAAATGTGAAACTGTCCCATGTGATCAGTTTGAGGCTGCATTTAAG.........................................................................................GCAGTTGAATTATGGTTAGTAGACAAAGCTGTACTCCCGATTGAAAATTCAGTTGCTGGGAGCATCCATCGTAACTACGATCTACTCCTTCGGCATAGGCTGCATATTGTGGGAGAAGTTCAGTTGCTTGTTAACCACTGCCTTCTGGGCTTGCCTTTATTCTTGAAAGAGGAATTAAAGCGCGTCGTGAGCCGGCGTCAA............................................................................................................................................................................................................................GCAACTTAAACAATGCAACATTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578074" ref_strand="+" ref_description="SGN-U578074 Tomato 200607#2 [112 ESTs aligned] (*GB) gi|157328520|emb|CAO21229.1| (e_value=2e-143) unnamed; (*ATH) AT1G11840.4 (e_value=7e-131)  Symbol: None | similar to lactoylglutathione lyase, putative / glyoxalase I, putative [Arabidopsis thaliana] (TAIR:At1g67280.1); similar to unknown [Brassica oleracea var. gemmifera] (GB:CAA99233.1); contains InterPro domain Glyoxalase I (InterPro:I... ; (*SWP) sp|Q948T6|LGUL_ORYSJ (e_value=6e-127) Lactoylglutathione lyase OS=Oryza sativa subsp. japonica GN=GLX-I; ">
      <seq>ttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataaaagcactttaccacgactgatctcactctctctcaatctgtagaacatggcggaagcaagtgcaccagctgtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgccacaccagatgtttacaaactggttgaggagataaaggccaagggtggaactgtcacaagggagcctggtcctgtcaagggtggatctagtgttattgcttttgtcaaagatcctgatggctacctatttgaaatcatccagagagagtctactcctgaaccactttgccaagtgatgcttcgtgtgggggatcttgaacgtgcgatcaaattctacgaaaaggcacttgggatgcaagtggtgaagaaagttgatagaccagagcataagtataccattgctatgatgggatatgctccagagaaagagacgactgttattgagttgacatacaactatggtgtgactgaatacacaaagggaaatgcatacgcacagattgcaataggcactgatgatgtctacaaaagcgcgaaggttgtcaatcttgctatccaagagctcggaggaaagataactagacagccaggatcaattcctggacttaacaccaagataacttcatttctggatccagatggctggaaaacagtgctggttgacaataaggattttctgaaggagctagaatcgtccaagtaactggtcaagaagatgcttgttcgtatttcactagatatcaataaataatctgctgtggtgtttatcttcacatgcagactaatgcatatgtgtctagtaccgtaatcaactactcctttaagcacttctccagacattttcgtgtgttacaatgtgaatttgacatctctaacttgctgagtatgtcttgctggttcctattcaccttttgagtttgtgtatgtatgaaattatccaatcagcaagtgcagacatcaaatctttcattaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79435" stop="73807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79132" g_stop="79099" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="99" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78863" g_stop="78739" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="224" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="349" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="414" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76641" g_stop="76429" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="627" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75323" g_stop="75276" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="675" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75163" g_stop="75056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="783" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74689" g_stop="74537" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="936" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="74427" g_stop="74103" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="937" r_stop="1261" r_length="325" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-U578074" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1196</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79132" e_stop="79099"/>
          <exon e_start="78863" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76429"/>
          <exon e_start="75323" e_stop="75276"/>
          <exon e_start="75163" e_stop="75056"/>
          <exon e_start="74689" e_stop="74537"/>
          <exon e_start="74427" e_stop="74103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCACGACTGATCTCACTCTCTCTCAATCTGGTAACACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAGGTGACATCTCTTATTTATATTTTCTCTTTTTTTAGATATCCTTTTGTGTTATATCCTTGATTTGCCAAATGCAAACTTCAGACAGAAATTTCCAGCATGAAATGAAAAGAAGATGCTTGTCATTTTTATGGACACATGCATTTGTCTCAAATCTAGTTTATACAATACACCAAAAGCAATGCAGCAACAACAACTAAGCAAGTCCCAAACAAGTTGTAGCTATCACCCGTATGAACTTTTTTCTTCCATCGTGCCCCATCCTTTGCTAAGTCTGTATTGATACGAAACATTTGCAGGTCTTTTGAAACAACTTTTTTCCATGTTATTTTAGGTCTAACCTATCTCCTTCTAACACTTCACTTGCCATAGTTTCACACCTATGTACCGGTGCATCAATAGGTTGACTCAGAACATGTCCAAACTATCTCAAGAGACCTTCTAGCAATTTATCCTCAATGTGTAATAGTTGCAGCTTCTGGCAAATGCATTCATTTGTAATCTGGTTTGAACGCACATCCAGCTTAGCATCCACATCTCCGCAACACTCATTTTTTGGATATATTGGACTTTTAACAACCCGCGTTCTCCATATACCATAGCCGGTCTTATAGCTATTCTATAGAACTGACCTTTTACTTTGGTAGGTATCCTTTTATCACATAACACCCCAGTAGCACTTTTCCATTTCAATCATCTGATTAACCCTTTTGAGTTAGAATCATCTGGTTAACCCTATGAGTAACATCTTCATCTGTCACTCCATTCTCTTGAAACAATGAGCAATAATTTCTTTTATTTCAAATCAATATAGTGATAGCATTGGGTTAAACATGTTTACGGGGCTAAACTGTTACTTTTCTCAAGCCTTAATCAATGTGACCCTTCAAATATGTCCAAGGTATACCCACTGTGATTGGAATTCCGAAAGAAGATAATTGCAATGCATTCATAGTTGTTGCTCTTTGTAATGGTGTTGTACGCATGATGGCTTTAGACATGAATACACATCAGCTTGGGCCATAATGTAATTGTCTATGTTGTATTTTTTTAATCTACAGGCACACTGTGCAATTTGTGGTTTGACAGAGCTTGTCTTTGAATGCAGGCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAGGTATGCTTGATTGTTTTTTGAAACTATAAGCTAAGTTTGATTTTTCTTTTGCTAGCCTTGGAGCCCAGATTACATGTACAATAACTAATTCTTATCTTTTATGCTTGGGCAGTATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAGGTTGATTTACTAGCATGCATATTTTCTCCTCCTTTCAATTCTTTTGTCCCCTTTTTGAGTAATGTGGGCGTACTGCTCGGGGAATACCTTCCAACCAAGTCTCGGATCCTTTTCCTTGTTCTCACTCAAGGAATGATCATCCAATGCTCTTGGCTCTCTCTTTCCTCTTCTCATTTTTTTTTTTTGGTTGTGTGAGAGAGAGAATCCATGTTTTCTGGCCAAAGTTTAGAATATTGTAAAAACATTATATTCTCTTTCTTGATTGAAATTCACTTGGAATTGTCATTGGTATCCCCATGATCAACGGTTAACCATGTAATTATTCCAAACATCTTTTAGGCTAAACTTGCATGTGATTTCTTCCAGATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACAGTAAGTGTCTGGCTATCACAGGCTGTATCATTGTTTTTCTGTCCTTTTCCAAGGCATGTATGTAATCAATGGGATATGAGCTCACTTTGTGTGTTGCGTTTATGCGTAGGTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAAGTGCAGACATCAAATCTTTCATTCATCAT</genome_strand>
        <mrna_strand>TTTACCACGACTGATCTCACTCTCTCTCAATCTG...........................................................................................................................................................................................................................................TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT............................................................................GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG................................................................................................................TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG..............................................................................................................................................................................................................................................................................................................................................................................ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA.............................................................................................................GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAAGTGCAGACATCAAATCTTTCATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578494" ref_strand="+" ref_description="SGN-U578494 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157328520|emb|CAO21229.1| (e_value=3e-49) unnamed; (*ATH) AT1G67280.1 (e_value=6e-43) | Symbol: None | lactoylglutathione lyase, putative / glyoxalase I, putative, similar to putative lactoylglutathione lyase SP:Q39366, GI:2494843 from (Brassica oleracea) | chr1:25191942-25194357 REVERSE | Aliases: F1N21.10; (*SWP) sp|Q948T6|LGUL_ORYSJ (e_value=1e-43) Lactoylglutathione lyase OS=Oryza sativa subsp. japonica GN=GLX-I; ">
      <seq>gctttcctctctctacatattttttttctttaatttagggttttactctgctcttcaattcttgatcgcattgtaaagagtttctagtaaatgctttgagaaatttttcatcttgtgaagatttgtagggattttgtgataaaaattagtgaatacttctgtatgatttgtgttctttgttgtttgttttgagatttctctctttcatagaatctacaatttttatttgtagtagaacatggcggaagcaagtgcaccagcagtaccaagtactgagttgttggagtggccaaagaaagataagcgcagaatgttgcatgctgtatatcgtgtcggtgaccttgaacgtaccatcaagttttacacagaatgttttgggatgaaattgttgaggcagagagatattccagaggagaagtattcgaatgcttttcttggttttggccctgaagagtctcactttgtggttgagttgacatataattatggagttgataagtatgacatcggaaccggctttgggcattttgctattgcccacacagatgtttacaaactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="-" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="79392" stop="76416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79093" g_stop="78739" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78662" g_stop="78538" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="482" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76782" g_stop="76718" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="547" r_length="65" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76641" g_stop="76628" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="561" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="-" ref_id="SGN-U578494" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79093" e_stop="78739"/>
          <exon e_start="78662" e_stop="78538"/>
          <exon e_start="76782" e_stop="76718"/>
          <exon e_start="76641" e_stop="76628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTG-GAAGATTTGTAGGGATTTTGTGATAAAAATTAGTG-ATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAAGTAGGTGGTTAGATGTTACAAGTGTTGATCTTGTTTTCTTGGTTAGATAGTAATAGTATCTTCTTATTGTTGTTAGGTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATAGTAAGTTTAAAGCTTTTATATGTCTGTTACAACTTACACATTTTGATTCTCAATTCTAGAAAGCTCCCTTATCAATTCCATGAAAGAAAAGGATTTTGGTCATCTCTCTATGGAGTTCATGCCGTGTGATAAGCCTCTAAAGAAGGTGCGAGCGTTGAGATTTAGCCTATTGTCTTAGAACTCCTTTGCCTTAAAATTACATGGATTTGTTAAGAACAGGTTCAAAGTCGCGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACAAAGAAGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGAGCATGAGTCATATATTCCGCGGAACGCCGTTCCTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCTAACCCATTTGGACCCCTTAGAGGCTCTAACCATGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCTGGTTGGGGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCGACGTTAGTCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGCTCTGCGAAGGCCTTTCGGAGATTGACCTTTCTTTCTCTTCTTTCGGGTCTGATCGGTCGAGCTCTCGTAATCGATCGCTCATATGTCCATTTCGTTCTGGCTAGCGAAGTCGGGATATTCTACGTTTAATGATAAATAGTAAAGTTATGAACTCAAGCTAGCAAAAAACAAGACTGAGGTCGATAGGGGCATTACTGGTAATTGCTAAGGTGCTTTCTGAAGTCTTAACCATTGGCTAGCGCTCATCTCCAGCTCTGTTTCCAACCTGTCATTTCATATATCATTCCCGTATGCAATACCTCTTATTTAATCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAAACTGGATATAACTGAAGGAAAGGCTATATAGGTACGATAGGAGGGTACGGTTAAGCAGGTAAGCGAAGGCGCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCTATCTATTCTTTTTTTTCTCTTTATTCAAAGTAAGCAGATCGAAAGCACGAAAAGGAATGTCTCAGCGTGCCCTTACTCTAATTCGAAATACGTCTCTTTGACCTCATTGAATGATTGTTTTCCCTTGTCTCTGCGAAAGAACTCCCTTGTTTCATCGGTGCAGCTGCTATTTGGTGAGAAAACTCCTTGCTTGTCGATAAGAGGAAATAAGCAGCTGTAGTAAGCGAGTAAGGAAGCGAAACTAGTCTTAGATGTCGCTAATCCGCTGCTTCTTCCTTCCTCTTAGCTCTTAGAAGTTGTTCTTGGTTTGTTCTCTGGGTTCTCTTTGGGTGGTGGAGAGAGAGTTGGAGAATGAAGCATGCATAACATTGTTAGGATACTCAGTATATGGTCCAATAGAGAGCCACGTGGAGAAGGGGATGCCAGGAGGTGACTTGATTTTACTGAACCAAAGGCACATCATTTAGTTAAGGAGCATAGATTTTAATAAATAGTTTACCTATTATCCAACACCAATAAATGAATTATATACTGTACCTTGAAGCGTAAATTTCAAATCTTACATAGATACCATTGTACAGATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGATGTAAGTAAATTTTGTAAGCAAAATTATGCGCACCATTTGTTTCTTCTAAATGAGCTTTGTTCCTCCTTTTCTCAAGGTTTACAAACTGGT</genome_strand>
        <mrna_strand>GCTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGCTCTTCAATTCTTGATCGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGAAATTTTTCATCTTGTGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGAATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTCTCTTTCATAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCAGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA............................................................................GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCCACACAGAT............................................................................GTTTACAAACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580331" ref_strand="+" ref_description="SGN-U580331 Tomato 200607#2 [71 ESTs aligned] (*GB) gi|51457940|gb|AAU03359.1| (e_value=0) adenylyl-sulfate reductase [Lycopersicon esculentum]; (*ATH) AT4G04610.1 (e_value=0)  Symbol: None | 5'-adenylylsulfate reductase (APR1) / PAPS reductase homolog (PRH19), identical to 5'-adenylylsulfate reductase (Arabidopsis thaliana) GI:2738756; identical to cDNA PAPS reductase homolog (PRH19) GI:1710111 | chr4:2325001-2327011 FORW... ; (*SWP) sp|P92979|APR1_ARATH (e_value=0) 5'-adenylylsulfate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=APR1; ">
      <seq>actcacggacttcttcccatcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactggacgaccatacagagtattcagccttgatactgggaggttgaacccggagacataccaattatttgacacagtggagaagcactatggcattcgcattgaatacatgttccctgattcagttgaagttcaggcgttggttaggaccaaagggcttttctctttctatgaggatggccaccaagagtgttgccgtgtaaggaaggttaggcctttgaggagagctctaaagggcttacgcgcctggatcacaggccagcgtaaagatcagtcccctggaactcgatcagaaatccccattgttcaggtggacccttcttttgaggggttggatggcggtgctggtagcttggtgaagtggaaccctgtggctaatgtggacggaaaagatatttggaacttcctgcgtgccatgaatgtgcctgtgaactcattgcattcacaaggatatgtatccattggatgcgaaccttgcacaaggccagttctaccagggcaacacgagagagagggaagatggtggtgggaagatgccaaggccaaggagtgtggcttgcacaagggcaacatcaaggatgaaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtagggaaattcagggcagatggtgaccagaaagcatttgcacaagaagaattgcagcttggcagcttccctacaatactcttcttcccaaagcactcttcaaaggccattaagtacccttcagagaagagggacgtagactccttgctggcttttgtgaatgctctcagatgaaaagcaaatggtgtttttgatcaatcacaccattgttttgacaaagagggagatatgtgggagttgtagaatatagtgaagaatggtggcaagatgcagcaccttcctctttgtgctttataagttgtttcttcttgtatagtgtttttagtatatggtggctctcccttctcctcctctgcattttattttccttagaaatcctacataagaagacaaataagtttttattactttcccatcccatccttctcaaatagagaagtatatatgtcttgagggctcaattttgttgagtgtttacttctccatattatagattttgcccatcttctctcattcttcttctaattcccttgatgtctctataattaagaacaactctctcttaacttttattagagaatatttggctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87393" stop="91164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87693" g_stop="87881" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="345" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="472" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="90864" g_length="1441"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="1913" r_length="1441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U580331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1913</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87693" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="90864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCACGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATATATGTCTTGAGGGCTCAATTTTGTTGAGTGTTTACTTCTCCATATTATAGATTTTGCCCATCTTCTCTCATTCTTCTTCTAATTCCCTTGATGTCTCTATAATTAAGAACAACTCTCTCTTAACTTTTATTAGAGAATATTTGGCTGT</genome_strand>
        <mrna_strand>ACTCACGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATATATGTCTTGAGGGCTCAATTTTGTTGAGTGTTTACTTCTCCATATTATAGATTTTGCCCATCTTCTCTCATTCTTCTTCTAATTCCCTTGATGTCTCTATAATTAAGAACAACTCTCTCTTAACTTTTATTAGAGAATATTTGGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590583" ref_strand="+" ref_description="SGN-U590583 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|51457940|gb|AAU03359.1| (e_value=8e-52) adenylyl-sulfate reductase [Lycopersicon esculentum]; (*ATH) AT4G21990.1 (e_value=6e-33)  Symbol: None | 5'-adenylylsulfate reductase (APR3) / PAPS reductase homolog (PRH26), identical to 5'-adenylylsulfate reductase (Arabidopsis thaliana) GI:2738760; identical to cDNA PAPS reductase homolog (PRH26) GI:1710113 | chr4:11657020-11659069 RE... ; (*SWP) sp|P92980|APR3_ARATH (e_value=5e-32) 5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3; ">
      <seq>gcggacttcttcccatcaccatcttcttctatttttcacaagcaatttctttgctggaacaaattgttctttgtctctgtgaaattaatctctctttgttgtagaaatggctttgactttcacttcttcatctgcaattcatggctctttgtcttcttcatcttcttcttatgaacaacccaaagtatcccaattgggtacctttcagccattggataggcctcaactattgtcgtcaactgttttgaattctcggaggcgttcggcagtgaagccattgtatgctgaacctaagaggaatgattcaatagttccgtcagcagctaccatcgtggctcctgaggtaggagagagtgttgaggcagaggactttgagaaattggctaaggagcttcaaaatgcttcccctcttgaggttatggacaaagcacttgagaaatttggagatgacattgctattgctttcagtggtgctgaagatgttgctttgatagagtacgcacatttaactgtaaatggcgctgcccaaacaaatggtactgctaccgttgctgatatttttgataccaaggacattgttaccttgagtaagcctggagttgagaacctagtaaaattggaagaccgaagagagccttggctcgttgttctttatgcaccttggtgccaattttgccaggcaatggaaggatcctatgttgaattggctgagaagttggctggttctggtgtgaaagtaaggaaattcagggcagatggtgaccaaaaagcattttcacaagaagaattgccgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="87398" stop="90633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87697" g_stop="87881" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88274" g_stop="88429" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="341" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88542" g_stop="88668" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="468" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89424" g_stop="89465" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="510" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89466" i_stop="90047" i_length="582">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90048" g_stop="90333" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="796" r_length="286" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U590583" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87697" e_stop="87881"/>
          <exon e_start="88274" e_stop="88429"/>
          <exon e_start="88542" e_stop="88668"/>
          <exon e_start="89424" e_stop="89465"/>
          <exon e_start="90048" e_stop="90333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAGGTACCCTTTTTACTTATTCCTTCTAAAGTTTGCATCTTTATCCTATAATTTGAAGCATTTTAGCATATGGGTTCGAATTTCTGTTGGGTTAACTCTTTTTTTTATCAATTTAGCATCTGGGTTAGTGTATTCCTCAGTTATTGTTTCAGATTTCTGCGCTATATGATTAGTTTCGAATTTCTTTCCTTGAGTGTGATATATTTGGGTTGGAAAATTGATCATTTGCTCCTTTTTTTTTTCAGATTTTAAAGTTGTTGTTTTTTTATACCCGTGTAGTTGAATTTAATATTTGCCGACAATTTTGCATCTGGGTTCAAATATTCTTAGGTTCTGTTTCATTTTTTTTGGGATTTATTATTTATATATTTGTTTATTCTGTTTGGTGTTTGCAGTATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGGTACATGAAATTTTCAATATTTGTCTTTGCATGTGTTAGTTTTTTTTGATGATGTTGAAGGGTGGTAATGACTCTTGGGCTGTGTGTGTTTGCTTTTTTGGTGAATTTGCAGAGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAGGTACGGTTTTTTAAATCTTGCTTTAGTGTGAGCCTAGTTTCTGTTCAAATGATTTTAGGTTGTATTATATGGATAATGTTCTTTATGATGTGCACAATAAATGTTGAAAAACAACCAGAGGCTTCTTCTAACTAGGGAAGTGTAAGGTGTTAGGGATGAATAGTTCCATGATTTGGGGACAAAAAAATGTTTAGTCATCTAAACCAATAAAACTATGCTTGTGATACTTAATTTCTGTTTCTTAAATATCTTGTTCTTATATTTTTGATTGAGCATTTCCATATTGATATCACATGAGTGTTTGATACTTATAAGCTAGACTAGAATACTAATGAGTTTTGGTAATTGAAGCAGTCAGGAAGTATTTGTTTTATGTTACATGTGAACAACATAATAAAGAAAAATAGTAAGAGTGGATTGTTGTGAACCTTGGTGATCTATCTATGGACTTTTGCAAAATTGCTGCTTGAACAATGCCAAGGGGAACTTGTTTTGCTTTGCGGCATTTGCTAATTTTATCTTTTTTCACTTGATAGTCTATGTTTTGTTTGAAATTTTGCTATGGGAGCTGTGGTGAATAAGGCATATTTTTTTTGAGTACAGCGTTCTGATATGTGAGCTATTTAACTTGTCCATCAAAAATCAGATTCATTTGAGAGCTGTCTCTATTGCTCTATTTTATATTGTAGCAGAATGATGATTTTTATGTGTTTCTGTCCCTAATGCAGCTCTTTGATGATTTTCTTATATTGCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTT</genome_strand>
        <mrna_strand>GCGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG................................................................................................................AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAAGGAAATTCAGGGCAGATGGTGACCAAAAAGCATTTTCACAAGAAGAATTGCCGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564419" ref_strand="+" ref_description="SGN-U564419 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157353890|emb|CAO46425.1| (e_value=2e-124) unnamed; (*ATH) AT4G00231.1 (e_value=5e-109) | Symbol: None | ataxin-related, contains weak similarity to Ataxin-10 (Spinocerebellar ataxia type 10 protein) (Brain protein E46 homolog) (Swiss-Prot:Q9UBB4) (Homo sapiens) | chr4:97499-99353 FORWARD | Aliases: None; (*SWP) sp|P28658|ATX10_MOUSE (e_value=3e-17) Ataxin-10 OS=Mus musculus GN=Atxn10; ">
      <seq>aactgaaaacaatagaaccctaggtttcccaaaatttccttctcctttctctctttgttttggtgtcgtctgcgtcaattttcttcctcctcagataatggatgataaggttgttactatggatgatcaaattgtatcagagcttacaatcccagaaaatgtcgccaaagaattattacttgtgtcaaactcatcttctttagaaacggcactcgacaagctgatacaactttccaaggaggggggtggacggttagatctgtcgtccaagaatgttgtcaccactgtcctccatctctgccagtctctgtcatctatctcttaccgtaacctccttttattgtctcttaaggtactcagaaatctgtgtgctggggagataagaaatcagaatggctttcttcaacaaagaggagttgaaattgtcttggatgttattatgtctgtaggactttctcctgatcctgattgtatgattattcgagtggggctgcaacttctaggaaactactcagtgggtggaggagaacgtcaatgtgatgtgtggtaccaattgtttcctcataagttcttgaagattgctagagttagaaaccaggaaatatgtgatcctttatgtatggtcatttacacttgctgtgatggtacggatggactgcttaccgatttatgttcagagcaagggttgcccattctgtttgaaattttgcgtactgcatcagccgttggtcttaaagaagtttggttgaagttgttactctcaaaactttgcattgagggctcccacatctcatcaattttcttcaaattacattcatatccttccgttgaggacaatggtgttgttacacatgtagctgatcagtttgttattgagcagccttatctcttgagtatactttcagaaatcttaaatgaacgagtagagcatattgttgtttctcatgattttgctcgaagtatctttgggatattgaagagtgcttctggggttgttgatttttcaataagagggaaaagtgatcttccagtggggtctgctcctattgatgttctaggatactctctcaccctcatgagagatatttgcgcttctgatcacttatcaagctctaaggaagaaagttcaaaggatgttgtggacgtacttgtttcctctgggcttattgaatttcttttgaacttgcttcgggatcttgaacctccaacgacaattaggaacgcaatgaagccggatcagatcaaggaggggacaataccttcttcatttaggtgttgtccataccaaggtttccggagagatattgttgccatccttggaaattgtgcttataggagaaggcatgtccaagatgagattagggataaaaatgggatccttttactgctacaacagtgtgttatagatgaagataatcctttcttaagggagtggggaatctggtgtgtgcgaaacctattggaagggaatgcagaaaaccaaggggctattactgatttggagcttcaaggaaccgtagatgttccagaacttgttagacttgggcttcgagtagaagttgatcccgtaactcgacgcacaaagcttgtgaattcctcatgatatgtcaagtgatgaaagttaaaaattgcaacttctggagttgacaaactgattgttcaggaaacttgtttcttggtctgcttaagattgattcacatgttctggaatgtccataagagagtacatacattacagacaataaaacagatggattttgataccaaggaatgaaaagagtgttgaagtcatggacgctcnagagtacattacaatttacaaacctataatttcttctttttgaaaaattgaaaacttaagtggtataaataaaggccactgntaatttatttctgaaatagctttaatagaaaaagctgttgtgtatttgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="91321" stop="96029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91621" g_stop="91714" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91715" i_stop="91892" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91893" g_stop="92523" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="725" r_length="631" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92524" i_stop="92615" i_length="92">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92616" g_stop="93612" g_length="997"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="1722" r_length="997" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93613" i_stop="95519" i_length="1907">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95520" g_stop="95729" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1723" r_stop="1935" r_length="213" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U564419" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1932</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91621" e_stop="91714"/>
          <exon e_start="91893" e_stop="92523"/>
          <exon e_start="92616" e_stop="93612"/>
          <exon e_start="95520" e_stop="95729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAAAACAATAGAACCCTAGGTTTCCCAAAATTTCCTTCTCCTTTCTCTCTTTGTTTTGGTGTCGTCTGCGTCAATTTTCTTCCTCCTCAGGTAAGACTTAATTGTTCCGTTCAAATTTACTTTCCTCTCTTTTTAAGCTTCAGATTTTAGTTTATGTTCATATGTTCAATACTCATACAGTATGCACTTTTTCAAGTGCAATTAAAAGTTGTTTTAGCAAATTGATCCTTCTCATTAATTTGATCATTTTTTCTGCATTCCTTGTTAGATAATGGATGATAAGGTTGTTACTATGGATGATCAAATTGTATCAGAGCTTACAATCCCAGAAAATGTCGCCAAAGAATTATTACTTGTGTCAAACTCATCTTCTTTAGAAACGGCACTCGACAAGCTGATACAACTTTCCAAGGAGGGGGGTGGACGGTTAGATCTGTCGTCCAAGAATGTTGTCACCACTGTCCTCCATCTCTGCCAGTCTCTGTCATCTATCTCTTACCGTAACCTCCTTTTATTGTCTCTTAAGGTACTCAGAAATCTGTGTGCTGGGGAGATAAGAAATCAGAATGGCTTTCTTCAACAAAGAGGAGTTGAAATTGTCTTGGATGTTATTATGTCTGTAGGACTTTCTCCTGATCCTGATTGTATGATTATTCGAGTGGGGCTGCAACTTCTAGGAAACTACTCAGTGGGTGGAGGAGAACGTCAATGTGATGTGTGGTACCAATTGTTTCCTCATAAGTTCTTGAAGATTGCTAGAGTTAGAAACCAGGAAATATGTGATCCTTTATGTATGGTCATTTACACTTGCTGTGATGGTACGGATGGACTGCTTACCGATTTATGTTCAGAGCAAGGGTTGCCCATTCTGTTTGAAATTTTGCGTACTGCATCAGCCGGTAAAGACCAGTGAATTTTGTAACTTCTGATTTAATAGAACTTCTGTTATTTGATTATTATGGTAAGCTTATGCGTTCATACTCTTTTGCAGTTGGTCTTAAAGAAGTTTGGTTGAAGTTGTTACTCTCAAAACTTTGCATTGAGGGCTCCCACATCTCATCAATTTTCTTCAAATTACATTCATATCCTTCCGTTGAGGACAATGGTGTTGTTACACATGTAGCTGATCAGTTTGTTATTGAGCAGCCTTATCTCTTGAGTATACTTTCAGAAATCTTAAATGAACGAGTAGAGCATATTGTTGTTTCTCATGATTTTGCTCGAAGTATCTTTGGGATATTGAAGAGTGCTTCTGGGGTTGTTGATTTTTCAATAAGAGGGAAAAGTGATCTTCCAGTGGGGTCTGCTCCTATTGATGTTCTAGGATACTCTCTCACCCTCATGAGAGATATTTGCGCTTCTGATCACTTATCAAGCTCTAAGGAAGAAAGTTCAAAGGATGTTGTGGACGTACTTGTTTCCTCTGGGCTTATTGAATTTCTTTTGAACTTGCTTCGGGATCTTGAACCTCCAACGACAATTAGGAACGCAATGAAGCCGGATCAGATCAAGGAGGGGACAATACCTTCTTCATTTAGGTGTTGTCCATACCAAGGTTTCCGGAGAGATATTGTTGCCATCCTTGGAAATTGTGCTTATAGGAGAAGGCATGTCCAAGATGAGATTAGGGATAAAAATGGGATCCTTTTACTGCTACAACAGTGTGTTATAGATGAAGATAATCCTTTCTTAAGGGAGTGGGGAATCTGGTGTGTGCGAAACCTATTGGAAGGGAATGCAGAAAACCAAGGGGCTATTACTGATTTGGAGCTTCAAGGAACCGTAGATGTTCCAGAACTTGTTAGACTTGGGCTTCGAGTAGAAGTTGATCCCGTAACTCGACGCACAAAGCTTGTGAATTCCTCATGATATGTCAAGTGATGAAAGTTAAAAATTGCAACTTCTGGAGTTGACAAACTGATTGTTCAGGAAACTTGTTTCTTGGTCTGCTTAAGATTGATTCACATGTTCTGGAATGTCCATAAGAGGTAACACACAAACTTCATCTTACTATAGTTTTATTATAACTTGTATTTTACCTCCTAGGTTGACAGGTTTCAGTTTGTATAATTAGTGGAAAAACTTAATATTATTAGACTTGTACTGATGGAATTCCTTATGTACAAAATCTACTCATATGCCATTGAGTATTAGTAACTAATTTTCCGGAGCTTCCATTACAATGGGCTCAAGAGTGAACCTAGTTGAGATTTCGTGATTTGGTGAGAGTTTGTGGTAGAATGAGTTAGATTTGATGAAAGATATCATGGGTTGCTAAAAATTTCTGATAGAAGTTCTGTTTTTGTTAAATGTTTATTGAAGTGGCTATATTCTGCTTCTTATGGATACGTCCACCTCTGACCCTATATAATTGTAAAATAATGTTTATTACCAGTTAACTGCATTTCTTCAATGTTTCCTAATTTTTGCTTGTGGATCCTACTTTCACTTATTCATGCATATTCTTAACTGCGTTTCTTCAAGGTTTCCTAATTTTTGCTTGTGGATCCTACTTTCACTTGTTCACGCATATTCCATGCTAGAGGCTGTTTAATCCTGTCATTTCTGTTAGGAATCATTAGCAACTTTCATGTTCAGAGAAGTGCACCGACTTACTAATACCTGAGTTTTTATATTTATTTGTTCTTTCTCTAGGCTAGAGGTGGGACTCAAGAAGTACACTTCCTGCCTTTTACACCTGTCAACAAGCACACAACTATTACTTTCATAGAATTGATGGCAATTGACATAGGTTTAGCAAAGGGTGACTTGAAGAGATGAGCCATAGCTTGAAAGTCACAAGATTTCTTACTACAAGAATGGTATGACTCCTAATTGGATGAACAACTGTACATCATATTAATTATCAAAAATAGGATTCTCCTACATACAGCTGATTAGTTTAGAATGTCTTATTAGAGTGTCTACTGGCAGTGCTTGCTTGACGCAAATTAAAGGACAATTTCTCGAGATAGCTTTGCCGCAAATGTATTGGAACCTTTTTTTATATATGTAATTATAAAATTCTGTTTCACCACTGTTTTTAGTTGTGCATTAGGATTCTAAAGACTCTTTATCCACGTGACCTTAAATGTTTTCAAAAGCATCTTAGGCTCCTGGCTTCTTTTGTCCTATCTTGTTCAATTCATTCTGAACTTGACTCTAGGGTGAACTCATAAAAATTCACTTGAGCTTGATGCTCAGCTATGTACTGGAACCACATAGTTCTGACTTCTGAGAGAATAGGAGATCTCTCTTGTAATCTGGCTGTGATAAGAAATAAGATCATGCAACTTAAGAGGCCATATACTTGAACTTTTTTCTTCCTGTATCTCGAGATAAGAAGTAGAGCCATCTCTCCAGTTATGTCCTTGGTTTGAAGAGAATATGGGTGTCGGGTTGCAACTTGCAAGGCCGCAATTAGCCCTATAGAAGAAAATCATAAGCTTGAAGAGAAGAGAAAAGAACCCTTGGATGATGCAGGGATCAGAGCTTGTGGGAGAACTTAGATATCTTACTATCACTAGACCTAACATTACCTATGCTGTGGGAATCTCTCTTTTGTTGATCTCCACATTCTTTTTGATACTAGAAAGCACGAAACTCGTGATTCTACTTCTTGTCTGTTTCTGGAAGGACATATGTTCCTTTTTTTTTTCTGTGTTGCTCTCTGTTTTTTTGTTTATTTTTTGCCTCAAAGGGGATGTATGTATATCTCTTTATGGAGAATCAGTGTTGATCATGTATATAGGTGGAGAATCAGTGTTGATCATGTATATAGGTGATCTCAGAAACAAGTATGCATAAGTATTAACCCAAATACTATTAAACTTCACTTTTTATAATTTGATAGATTGTGTTAATCATTAACTAATTACCTTAATTTTGTTGGCAGAGTACATACATTACAGACAATAAAACAGATGGATTTTGATACCAAGGAATGAAGAGAGTGTTGAAGTCATGGACGCTC-AGAGTACATTACAATTTACAAACCTATAATTTCTTCTTTTTGAAAAATTGAAAACTTAAGTGGTATAAATAAAGGCCACTG-TAATTTATTTCTGAAATAGCTTTAATAG-AAAAGCTGTTGTGTATTTGTCTT</genome_strand>
        <mrna_strand>AACTGAAAACAATAGAACCCTAGGTTTCCCAAAATTTCCTTCTCCTTTCTCTCTTTGTTTTGGTGTCGTCTGCGTCAATTTTCTTCCTCCTCAG..................................................................................................................................................................................ATAATGGATGATAAGGTTGTTACTATGGATGATCAAATTGTATCAGAGCTTACAATCCCAGAAAATGTCGCCAAAGAATTATTACTTGTGTCAAACTCATCTTCTTTAGAAACGGCACTCGACAAGCTGATACAACTTTCCAAGGAGGGGGGTGGACGGTTAGATCTGTCGTCCAAGAATGTTGTCACCACTGTCCTCCATCTCTGCCAGTCTCTGTCATCTATCTCTTACCGTAACCTCCTTTTATTGTCTCTTAAGGTACTCAGAAATCTGTGTGCTGGGGAGATAAGAAATCAGAATGGCTTTCTTCAACAAAGAGGAGTTGAAATTGTCTTGGATGTTATTATGTCTGTAGGACTTTCTCCTGATCCTGATTGTATGATTATTCGAGTGGGGCTGCAACTTCTAGGAAACTACTCAGTGGGTGGAGGAGAACGTCAATGTGATGTGTGGTACCAATTGTTTCCTCATAAGTTCTTGAAGATTGCTAGAGTTAGAAACCAGGAAATATGTGATCCTTTATGTATGGTCATTTACACTTGCTGTGATGGTACGGATGGACTGCTTACCGATTTATGTTCAGAGCAAGGGTTGCCCATTCTGTTTGAAATTTTGCGTACTGCATCAGCCG............................................................................................TTGGTCTTAAAGAAGTTTGGTTGAAGTTGTTACTCTCAAAACTTTGCATTGAGGGCTCCCACATCTCATCAATTTTCTTCAAATTACATTCATATCCTTCCGTTGAGGACAATGGTGTTGTTACACATGTAGCTGATCAGTTTGTTATTGAGCAGCCTTATCTCTTGAGTATACTTTCAGAAATCTTAAATGAACGAGTAGAGCATATTGTTGTTTCTCATGATTTTGCTCGAAGTATCTTTGGGATATTGAAGAGTGCTTCTGGGGTTGTTGATTTTTCAATAAGAGGGAAAAGTGATCTTCCAGTGGGGTCTGCTCCTATTGATGTTCTAGGATACTCTCTCACCCTCATGAGAGATATTTGCGCTTCTGATCACTTATCAAGCTCTAAGGAAGAAAGTTCAAAGGATGTTGTGGACGTACTTGTTTCCTCTGGGCTTATTGAATTTCTTTTGAACTTGCTTCGGGATCTTGAACCTCCAACGACAATTAGGAACGCAATGAAGCCGGATCAGATCAAGGAGGGGACAATACCTTCTTCATTTAGGTGTTGTCCATACCAAGGTTTCCGGAGAGATATTGTTGCCATCCTTGGAAATTGTGCTTATAGGAGAAGGCATGTCCAAGATGAGATTAGGGATAAAAATGGGATCCTTTTACTGCTACAACAGTGTGTTATAGATGAAGATAATCCTTTCTTAAGGGAGTGGGGAATCTGGTGTGTGCGAAACCTATTGGAAGGGAATGCAGAAAACCAAGGGGCTATTACTGATTTGGAGCTTCAAGGAACCGTAGATGTTCCAGAACTTGTTAGACTTGGGCTTCGAGTAGAAGTTGATCCCGTAACTCGACGCACAAAGCTTGTGAATTCCTCATGATATGTCAAGTGATGAAAGTTAAAAATTGCAACTTCTGGAGTTGACAAACTGATTGTTCAGGAAACTTGTTTCTTGGTCTGCTTAAGATTGATTCACATGTTCTGGAATGTCCATAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACATACATTACAGACAATAAAACAGATGGATTTTGATACCAAGGAATGAAAAGAGTGTTGAAGTCATGGACGCTCNAGAGTACATTACAATTTACAAACCTATAATTTCTTCTTTTTGAAAAATTGAAAACTTAAGTGGTATAAATAAAGGCCACTGNTAATTTATTTCTGAAATAGCTTTAATAGAAAAAGCTGTTGTGTATTTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583100" ref_strand="+" ref_description="SGN-U583100 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|3157949|gb|AAC17632.1| (e_value=0) Similar to glucan endo-1,3-beta-D-glucosidase precursor gb|Z28697 from Nicotiana tabacum.  ESTs gb|Z18185 and gb|AA605362 come from this gene. [Arabidopsis thaliana]; (*ATH) AT1G11820.1 (e_value=1e-165)  Symbol: None | similar to glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] (TAIR:At2g01630.1); similar to E131_ARATH Putative glucan endo-1,3-beta-glucosidase 1 precursor ((1->3)-beta-glucan endohydrolase) (... ; (*SWP) sp|O65399|E131_ARATH (e_value=1e-174) Putative glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820/At1g11830; ">
      <seq>tctttttcttatagcttactccaaatttagatcttgcaagtcaaaaattccttatgtcaattgccccttttagtagtaaacagcaaaaaatttctcaagataatgcaatccctacctgaacctgaaacagaagatgatacaagaaaacatcaagcttctctttaatggcaaatactaaaaagttccctcctttcttcttcttctttgtcctcttctcttgctgcttcttctccacttcaagttcaaattttgcaccagagataaaagtgcagcaagacaaagatgagccatatgtgggagtgaacataggtacagatgtttccaatttgctttcacctgcagacttggttgcttttttgcaattacagaagataactcatataaggctttatgatgctgaccctgatatactcaaagcactagctaagaccaaaataagagtgattattagtgtgcctaacaaccaaattcttgctattgggtcctctaatactactgcagctgcctggattgggcgcaatgtggcagcttactaccctgaaactcttatcactgcaatagcagttggggatgaaatcttgaccactgtgccaagttcagctcctttgcttatgccagcaattgagtcactttatagtgctttagtggctgcaaatttgcataaccaaatcaagatttcaaccccaaatgctgcttccattattcttgacccttttccaccttcccaagcttttttcaatcagtccatgagctctgtcctttctaagttattgcagttctgttcaaggacacagtcacctctgatgatgaatttgtacccttattatgtgtttatgcagaataaaggggttgttcctatagacaactctcttttcaagcccttgacaccttctaaagagatggtggatcctaatactttgcttcattacaccaatgtgcttgatgcaatgatagattcagtctatttttccatgaaaaatctcaatattacagatgtgctagttcttgttaccgagtcaggatggccttcaaagggggattctaaagagccttatgctacaattgacaatgctgatacttataactcgaatttaattaagcatataattgatcgcagtggtacaccattgcatccggagattacttctagtgtatacatatatgagttattcaatgaggatttgaggtcacccccattgtccgaggcaaattgggggctattccatgggaattcaacgcctgtttacctgcttcatgtgtctggaagtggtacattcttggctaatgacaccactaaccaaacgtattgcatagcaatggatggggttgataagagaacaatgcaggcagctttagattgggcttgtggaccggggagggcaaattgctctgaaattcagccaggagagagttgttatcagcctaatgatgtgaagaaccatgcttcatatgcatttgatagctattatcagaaagaagggggatctcctagttcttgtgacttcaagggagtggccatgatcaccacaactgatccaagtcacgggagttgtatatttccaggaagcaagaaagtaagcaataaaacaagcgaggtagtgaacgcgacacaaccaagtggagcaaacacaataaggtttcttggagcacagacaagtaaatttgacaagaatgtgcatgttttatttggtgttgccttgtgcttgttttattattcattgattcaagtacaattaagttaattagctgaaatctttttatttgtttaataaaaaagtagtactagttcattgtggagagggcagtgatgttttgcagaggagtgcttattgtgtggatgaatatttttttgggaggatcacatgtaaggggattctttgatggacctttttgtaaaaagaaagttgtatctaatgagattcttggaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="96242" stop="100015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96542" g_stop="96799" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96800" i_stop="96906" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96907" g_stop="98187" g_length="1281"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="1539" r_length="1281" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98188" i_stop="99162" i_length="975">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99163" g_stop="99190" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1540" r_stop="1567" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99191" i_stop="99351" i_length="161">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99352" g_stop="99715" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1568" r_stop="1931" r_length="364" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U583100" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>1931</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96542" e_stop="96799"/>
          <exon e_start="96907" e_stop="98187"/>
          <exon e_start="99163" e_stop="99190"/>
          <exon e_start="99352" e_stop="99715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTCTTATAGCTTACTCCAAATTTAGATCTTGCAAGTCAAAAATTCCTTATGTCAATTGCCCCTTTTAGTAGTAAACAGCAAAAAATTTCTCAAGATAATGCAATCCCTACCTGAACCTGAAACAGAAGATGATACAAGAAAACATCAAGCTTCTCTTTAATGGCAAATACTAAAAAGTTCCCTCCTTTCTTCTTCTTCTTTGTCCTCTTCTCTTGCTGCTTCTTCTCCACTTCAAGTTCAAATTTTGCACCAGGTAACATTTATGAACCAATCTTGAAAAAAAAAACATGTCTTTTTTTTTGTGGGGTTTCTTGATTTTGTATTTTTTTTTTCTGAATATGGTTCTTGAATTTGTTGCAGAGATAAAAGTGCAGCAAGACAAAGATGAGCCATATGTGGGAGTGAACATAGGTACAGATGTTTCCAATTTGCTTTCACCTGCAGACTTGGTTGCTTTTTTGCAATTACAGAAGATAACTCATATAAGGCTTTATGATGCTGACCCTGATATACTCAAAGCACTAGCTAAGACCAAAATAAGAGTGATTATTAGTGTGCCTAACAACCAAATTCTTGCTATTGGGTCCTCTAATACTACTGCAGCTGCCTGGATTGGGCGCAATGTGGCAGCTTATTACCCTGAAACTCTTATCACTGCAATAGCAGTTGGGGATGAAATCTTGACCACTGTGCCAAGTTCAGCTCCTTTGCTTATGCCAGCAATTGAGTCACTTTATAGTGCTTTAGTGGCTGCAAATTTGCATAACCAAATCAAGATTTCAACTCCAAATGCTGCTTCCATTATTCTTGACCCTTTTCCACCTTCCCAAGCTTTTTTCAATCAGTCCATGAGCTCTGTCCTTTCTAAGTTATTGCAGTTCTGTTCAAGGACACAGTCACCTCTGATGATGAATTTGTACCCTTATTATGTGTTTATGCAGAATAAAGGGGTTGTTCCTATAGACAACTCTCTTTTCAAGCCCTTGACACCTTCTAAAGAGATGGTGGATCCTAATACTTTGCTTCATTACACCAATGTGCTTGATGCAATGATTGATTCAGTCTATTTTTCCATGAAAAATCTCAATATTACAGATGTGCTAGTTCTTGTTACCGAGTCAGGATGGCCTTCAAAGGGGGATTCTAAAGAGCCTTATGCTACAATTGACAATGCTGATACTTATAACTCGAATTTAATTAAGCATATAATTGATCGCAGTGGTACACCATTGCATCCGGAGATTACTTCTAGTGTATACATATATGAGTTATTCAATGAGGATTTGAGGTCACCCCCATTGTCCGAGGCAAATTGGGGGCTATTCCATGGGAATTCAACGCCTGTTTACCTGCTTCATGTGTCTGGAAGTGGTACATTCTTGGCTAATGACACCACTAACCAAACGTATTGCATAGCAATGGATGGGGTTGATAAGAGAACAATGCAGGCAGCTTTAGATTGGGCTTGTGGACCGGGGAGGGCAAATTGCTCTGAAATTCAGCCAGGAGAGAGTTGTTATCAGCCTAATGATGTGAAGAACCATGCTTCATATGCATTTGATAGCTATTATCAGAAAGAAGGGGGATCTCCTAGTTCTTGTGACTTCAAGGGAGTGGCCATGATCACCACAACTGATCCAAGTAAGTCTATCATAATCTTAGTTTCTCTGTGTATTTAGTTTTCTTTCTATTTCAAGAAAATATTAGTTCCAATGCATTAAGTTGAAGTTTGAAGTTTTAGTTATGGATTTATGAGCTACACTTAAGTTTGTTACAATGAGAGAGCTGAAATGGATGATACAAAAGTTAATTCTTTATTAGGTGATTTAAGCATTTTGTCCCAAACTATTTCATGTTCAACATTTTAATGTAAAATATCTTTGAACCATCCCATTTGAAAAACACAACAACAACAAAACAATCCAATTCAAAAATAATTTATGAACCATAAAGAATGTTTAATGGCCTTCTTAAGTTGATTCAATGATACACTGACAACTGTAATCACAAATGTCATGTTCTGCAAAATAATTCATGACCTAGTGGTTACCAGACCCACAATGGAACTTTAGTGCCCACTTGGATATGGAAGATTTACACTTGGATGGTGGAAATAAAATTTGAAATAGGATTTCAGTTTTTATATAGTTTATGCTCCATTTTAGGGTCCATACAAATAGAGATGTACTTGATATTCAATTTTATATAAAATAACATACTTGCACCCATGGGTGAAAACTGACACCATAAGAAACCAGAGTTCGAATCTCCGCGAAGACAAACGACTTCACATGATTCGTTTCAACTTGCTTAGGCCTTGGTATATGTGTTGTGTGGGAGATGACGATGTACATATAAGTTCGACCAGACAGCACCGTTATTAGATAAAAGTACTAACATATTATCAATAGAATGGAAACACAAGAATGCATATGTTGTTTTGTGGAGTTTGACTTAACCAGAATAGAGTACTTATATCATGTTTATATATATATATATATATAGCTAGCAAGTATAGGGCTCCACTTGTTTCCTATTTTTAAAGTGAAGTCTATTCTAAATTATTTAGCTGAAGCTCTGAACTTATGTCTTTCCATTTGTGGGGAATATATGCAGGTCACGGGAGTTGTATATTTCCAGGAAGGTGAGCATAAATTTTTGTCCTTTTTTCCCCATACTATTTGTCCTTGTCCTTCTCATTTCCCCATGCTGATATTAGCTGTAAAATCACTGTTTCCCTATTTCTTTTGATGATCATCTTGGGTTAGAACGTAGACTTACAATCGGTAAACTACTAAAATGCAGCAAGAAAGTAAGCAATAAAACAAGCGAGGTAGTGAACGCGACACAACCAAGTGGAGCAAATACAATAAGGTTTCTTGGAGCACAGACAAGTATATTTGACAAGAATGTGCATGTTTTATTTGGTGTTGCCTTGTGCTTGTTTTATTATTCATTGATTCAGGTACAATTAAGTTAATTAGTTTTTTAGTTGAAATCTTTTTATTTGTTCAATAAAGAAAGTAGTACTAGTTCATTGTGGAGAGGGCAGTGATGTTTTGCAGAGGAGTGC------T-T--ATGAATATTTTTTTGGGAGGATCACATGTAAGGGGATTCTTTGATGGACCTTTTTGTAAAAAGAAAGTTGTATCTAATGAGATTCTTGGAAGTT</genome_strand>
        <mrna_strand>TCTTTTTCTTATAGCTTACTCCAAATTTAGATCTTGCAAGTCAAAAATTCCTTATGTCAATTGCCCCTTTTAGTAGTAAACAGCAAAAAATTTCTCAAGATAATGCAATCCCTACCTGAACCTGAAACAGAAGATGATACAAGAAAACATCAAGCTTCTCTTTAATGGCAAATACTAAAAAGTTCCCTCCTTTCTTCTTCTTCTTTGTCCTCTTCTCTTGCTGCTTCTTCTCCACTTCAAGTTCAAATTTTGCACCAG...........................................................................................................AGATAAAAGTGCAGCAAGACAAAGATGAGCCATATGTGGGAGTGAACATAGGTACAGATGTTTCCAATTTGCTTTCACCTGCAGACTTGGTTGCTTTTTTGCAATTACAGAAGATAACTCATATAAGGCTTTATGATGCTGACCCTGATATACTCAAAGCACTAGCTAAGACCAAAATAAGAGTGATTATTAGTGTGCCTAACAACCAAATTCTTGCTATTGGGTCCTCTAATACTACTGCAGCTGCCTGGATTGGGCGCAATGTGGCAGCTTACTACCCTGAAACTCTTATCACTGCAATAGCAGTTGGGGATGAAATCTTGACCACTGTGCCAAGTTCAGCTCCTTTGCTTATGCCAGCAATTGAGTCACTTTATAGTGCTTTAGTGGCTGCAAATTTGCATAACCAAATCAAGATTTCAACCCCAAATGCTGCTTCCATTATTCTTGACCCTTTTCCACCTTCCCAAGCTTTTTTCAATCAGTCCATGAGCTCTGTCCTTTCTAAGTTATTGCAGTTCTGTTCAAGGACACAGTCACCTCTGATGATGAATTTGTACCCTTATTATGTGTTTATGCAGAATAAAGGGGTTGTTCCTATAGACAACTCTCTTTTCAAGCCCTTGACACCTTCTAAAGAGATGGTGGATCCTAATACTTTGCTTCATTACACCAATGTGCTTGATGCAATGATAGATTCAGTCTATTTTTCCATGAAAAATCTCAATATTACAGATGTGCTAGTTCTTGTTACCGAGTCAGGATGGCCTTCAAAGGGGGATTCTAAAGAGCCTTATGCTACAATTGACAATGCTGATACTTATAACTCGAATTTAATTAAGCATATAATTGATCGCAGTGGTACACCATTGCATCCGGAGATTACTTCTAGTGTATACATATATGAGTTATTCAATGAGGATTTGAGGTCACCCCCATTGTCCGAGGCAAATTGGGGGCTATTCCATGGGAATTCAACGCCTGTTTACCTGCTTCATGTGTCTGGAAGTGGTACATTCTTGGCTAATGACACCACTAACCAAACGTATTGCATAGCAATGGATGGGGTTGATAAGAGAACAATGCAGGCAGCTTTAGATTGGGCTTGTGGACCGGGGAGGGCAAATTGCTCTGAAATTCAGCCAGGAGAGAGTTGTTATCAGCCTAATGATGTGAAGAACCATGCTTCATATGCATTTGATAGCTATTATCAGAAAGAAGGGGGATCTCCTAGTTCTTGTGACTTCAAGGGAGTGGCCATGATCACCACAACTGATCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGGGAGTTGTATATTTCCAGGAAG.................................................................................................................................................................CAAGAAAGTAAGCAATAAAACAAGCGAGGTAGTGAACGCGACACAACCAAGTGGAGCAAACACAATAAGGTTTCTTGGAGCACAGACAAGTAAATTTGACAAGAATGTGCATGTTTTATTTGGTGTTGCCTTGTGCTTGTTTTATTATTCATTGATTCAAGTACAATTAAGTT-A--A-----TTAGCTGAAATCTTTTTATTTGTTTAATAAA-AAAGTAGTACTAGTTCATTGTGGAGAGGGCAGTGATGTTTTGCAGAGGAGTGCTTATTGTGTGGATGAATATTTTTTTGGGAGGATCACATGTAAGGGGATTCTTTGATGGACCTTTTTGTAAAAAGAAAGTTGTATCTAATGAGATTCTTGGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589244" ref_strand="+" ref_description="SGN-U589244 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157328518|emb|CAO21227.1| (e_value=3e-36) unnamed; (*ATH) AT2G01630.1 (e_value=3e-22) | Symbol: None | glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative, similar to beta-1,3-glucanase GI:15150341 from (Camellia sinensis) | chr2:279283-282122 REVERSE | Aliases: T8O11.20, T8O11_20; (*SWP) sp|O65399|E131_ARATH (e_value=1e-32) Putative glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820/At1g11830; ">
      <seq>attgctctgaaattcagccaggagagagttgttatcagcctaatgatgtgaagaaccatgcttcatatgcatttgatagctattatcagaaagaagggggatctcctagttcttgtgacttcaagggagtggccatgatcaccacaactgatccaagtcacgggagttgtatatttccaggaagcaagaaagtaagcaataaaacaagcgaggtagtgaacgcgacacaaccaagtggagcaaatacaataaggtttcttggagcacagacaagtatatttgacaagaatgtgcatgttttatttggtgttgccttgtgcttgttttattattcattgattcaggtacaattaagttaattagttttttagttgaaatctttttatttgttcaataaagaaagtagtactagttcattgtggagagggcagtgatgttttgcagaggagtgcttatgaatatttttttgggaggatcacatgtaaggggattctttgatggacctttttgtaaaaagaaagttgtatctaatgagattcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="97732" stop="100010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98032" g_stop="98187" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98188" i_stop="99162" i_length="975">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99163" g_stop="99190" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="184" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99191" i_stop="99351" i_length="161">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99352" g_stop="99710" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="543" r_length="359" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U589244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98032" e_stop="98187"/>
          <exon e_start="99163" e_stop="99190"/>
          <exon e_start="99352" e_stop="99710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTCTGAAATTCAGCCAGGAGAGAGTTGTTATCAGCCTAATGATGTGAAGAACCATGCTTCATATGCATTTGATAGCTATTATCAGAAAGAAGGGGGATCTCCTAGTTCTTGTGACTTCAAGGGAGTGGCCATGATCACCACAACTGATCCAAGTAAGTCTATCATAATCTTAGTTTCTCTGTGTATTTAGTTTTCTTTCTATTTCAAGAAAATATTAGTTCCAATGCATTAAGTTGAAGTTTGAAGTTTTAGTTATGGATTTATGAGCTACACTTAAGTTTGTTACAATGAGAGAGCTGAAATGGATGATACAAAAGTTAATTCTTTATTAGGTGATTTAAGCATTTTGTCCCAAACTATTTCATGTTCAACATTTTAATGTAAAATATCTTTGAACCATCCCATTTGAAAAACACAACAACAACAAAACAATCCAATTCAAAAATAATTTATGAACCATAAAGAATGTTTAATGGCCTTCTTAAGTTGATTCAATGATACACTGACAACTGTAATCACAAATGTCATGTTCTGCAAAATAATTCATGACCTAGTGGTTACCAGACCCACAATGGAACTTTAGTGCCCACTTGGATATGGAAGATTTACACTTGGATGGTGGAAATAAAATTTGAAATAGGATTTCAGTTTTTATATAGTTTATGCTCCATTTTAGGGTCCATACAAATAGAGATGTACTTGATATTCAATTTTATATAAAATAACATACTTGCACCCATGGGTGAAAACTGACACCATAAGAAACCAGAGTTCGAATCTCCGCGAAGACAAACGACTTCACATGATTCGTTTCAACTTGCTTAGGCCTTGGTATATGTGTTGTGTGGGAGATGACGATGTACATATAAGTTCGACCAGACAGCACCGTTATTAGATAAAAGTACTAACATATTATCAATAGAATGGAAACACAAGAATGCATATGTTGTTTTGTGGAGTTTGACTTAACCAGAATAGAGTACTTATATCATGTTTATATATATATATATATATAGCTAGCAAGTATAGGGCTCCACTTGTTTCCTATTTTTAAAGTGAAGTCTATTCTAAATTATTTAGCTGAAGCTCTGAACTTATGTCTTTCCATTTGTGGGGAATATATGCAGGTCACGGGAGTTGTATATTTCCAGGAAGGTGAGCATAAATTTTTGTCCTTTTTTCCCCATACTATTTGTCCTTGTCCTTCTCATTTCCCCATGCTGATATTAGCTGTAAAATCACTGTTTCCCTATTTCTTTTGATGATCATCTTGGGTTAGAACGTAGACTTACAATCGGTAAACTACTAAAATGCAGCAAGAAAGTAAGCAATAAAACAAGCGAGGTAGTGAACGCGACACAACCAAGTGGAGCAAATACAATAAGGTTTCTTGGAGCACAGACAAGTATATTTGACAAGAATGTGCATGTTTTATTTGGTGTTGCCTTGTGCTTGTTTTATTATTCATTGATTCAGGTACAATTAAGTTAATTAGTTTTTTAGTTGAAATCTTTTTATTTGTTCAATAAAGAAAGTAGTACTAGTTCATTGTGGAGAGGGCAGTGATGTTTTGCAGAGGAGTGCTTATGAATATTTTTTTGGGAGGATCACATGTAAGGGGATTCTTTGATGGACCTTTTTGTAAAAAGAAAGTTGTATCTAATGAGATTCTTGG</genome_strand>
        <mrna_strand>ATTGCTCTGAAATTCAGCCAGGAGAGAGTTGTTATCAGCCTAATGATGTGAAGAACCATGCTTCATATGCATTTGATAGCTATTATCAGAAAGAAGGGGGATCTCCTAGTTCTTGTGACTTCAAGGGAGTGGCCATGATCACCACAACTGATCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGGGAGTTGTATATTTCCAGGAAG.................................................................................................................................................................CAAGAAAGTAAGCAATAAAACAAGCGAGGTAGTGAACGCGACACAACCAAGTGGAGCAAATACAATAAGGTTTCTTGGAGCACAGACAAGTATATTTGACAAGAATGTGCATGTTTTATTTGGTGTTGCCTTGTGCTTGTTTTATTATTCATTGATTCAGGTACAATTAAGTTAATTAGTTTTTTAGTTGAAATCTTTTTATTTGTTCAATAAAGAAAGTAGTACTAGTTCATTGTGGAGAGGGCAGTGATGTTTTGCAGAGGAGTGCTTATGAATATTTTTTTGGGAGGATCACATGTAAGGGGATTCTTTGATGGACCTTTTTGTAAAAAGAAAGTTGTATCTAATGAGATTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573146" ref_strand="+" ref_description="SGN-U573146 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|118487967|gb|ABK95805.1| (e_value=1e-165) unknown; (*ATH) AT4G22010.1 (e_value=3e-156)  Symbol: SKS4 | multi-copper oxidase type I family protein, similar to pollen-specific BP10 protein (SP:Q00624)(Brassica napus); contains Pfam profile: PF00394 Multicopper oxidase | chr4:11663336-11666727 FORWARD | Aliases: F1N20.110, F1N20_110, SKS4... ; (*SWP) sp|P29162|ASOL_TOBAC (e_value=8e-115) L-ascorbate oxidase homolog OS=Nicotiana tabacum; ">
      <seq>attttccattttggagaagaaggggaaacctgaaaaagttcattttcttttcaacaaagtagaaagagaaacaacacagaatgagggagaagagccttaatgttcattgttctttcattttcactattattcttgtgttagttactactttacaatgtatatatgctgacaatccttatcgatactacacttggaaaatcacttacggagatatttaccctttgggtgtcaaacaacaggggatcttgataaatgggcagtttccagggccacagattgattgtgtaacaaatgacaatttgattatcagtgtctacaactacttgagtgaaccttttctcatttcttggaatggtatacaacaaaggaggaactcatggcaagatggagtttatggcacaacttgtccaatcctacctggaaagaacttcacttataccctccaagcaaaagaccagataggtagttatttctacttcccatcacttgcaatgcacaaggcagcaggaggatatggtgccatcagagtctatagccgtcctcgaattccagtaccttttgctccacctgctcatgatttcactgtactagctggagacttgtacaagagaagtcacaggcaactgaagtacattttagatagtggtcatgatcttccgttacctgatggtcttattatcaatggtcgaggatggaacggatacacatttacagttgatcaaggtaagacatataggttcaggatatctaatgtggggattgcgacatcaattaatttcagaattcaagggcacacgatgaaactggttgaagttgagggatcacatacacttcagacaacctacacttcacttgacatccatctaggacaatcttattcagttttagtcactgccaatcagcctccaaaggactactacatcgtggtctcttcacgattcaccacacgagtgctaaccactactgcccgtcctcactacagcaactcatggacaaaagtctctggacctccccctggagggcctactactcaaattaattggtccctttaccaagccagatctattcgttggaatctcactgcaagtggaccaaggcccaatcctcaaggttcttatcattatggattgatcaacccttcgcgcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="104814" stop="108272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105114" g_stop="105352" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105353" i_stop="105423" i_length="71">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105424" g_stop="105533" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="349" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105534" i_stop="106866" i_length="1333">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106867" g_stop="107137" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="620" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107138" i_stop="107231" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107232" g_stop="107334" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="723" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107335" i_stop="107420" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107421" g_stop="107766" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="1069" r_length="346" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107767" i_stop="107892" i_length="126">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107893" g_stop="107972" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1070" r_stop="1149" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U573146" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1149</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105114" e_stop="105352"/>
          <exon e_start="105424" e_stop="105533"/>
          <exon e_start="106867" e_stop="107137"/>
          <exon e_start="107232" e_stop="107334"/>
          <exon e_start="107421" e_stop="107766"/>
          <exon e_start="107893" e_stop="107972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCCATTTTGGAGAAGAAGGGGAAACCTGAAAAAGTTCATTTTCTTTTCAACAAAGTAGAAAGAGAAACAACACAGAATGAGGGAGAAGAGCCTTAATGTTCATTGTTCTTTCATTTTCACTATTATTCTTGTGTTAGTTACTACTTTACAATGTATATATGCTGACAATCCTTATCGATACTACACTTGGAAAATCACTTACGGAGATATTTACCCTTTGGGTGTCAAACAACAGGTATATAATTCTTGTTAAATGTAGGTTTCTTGGAGGCGATTCAAGTAACGCTCTGTTTTCCTTGGTGGCAGGGGATCTTGATAAATGGGCAGTTTCCAGGGCCACAGATTGATTGTGTAACAAATGACAATTTGATTATCAGTGTCTACAACTACTTGAGTGAACCTTTTCTCATTTCTTGGTAAGATTTTAATCAAAATGTTTTCTTTTTTCTCATTTCATAATCCTCTGTTAATATATTAAAATGGTGCAATCTTTTGGCTGTTATGCAATGTGATTAACAATTTTAGATACAAAAAACTTTTTTTTTTAACGCAGATCTGTTTAACATTTTGCCTTCTTTGTACGTTCATGAACAGTGAAATTTCTTTGATTAAACCATTTTTCGTGTCAAATATTGCTTCATTAATATGTTTGTTTTTGTTCCTCATTTCTTCTTTTGCTAATTAACGATTTTGTTTTCTGTTATTCCTAATATGGCAGTATTATACTATAGAAAAGTGTAGCAAAATAATACAATTTTTTTTTTTTGCAAAAAGCTAAACGGTGTCTTTTGGAATGAAAAAGATGGGGGAGGTATGGGGATGAGATCCTTGATCCTTTAATAAAGATTTTGAAAGATTTCGAATTCAAGTCATAAAATGAAATAAAGAGATTTCTAACAGTGACCCCTGTTTCCCTTTAAGTGGGTTATGCACGTCTCGAATCTGAATTAATTATGATTAAAATGGAAGATTGGTAGGGACTTGTCTTTAAGGAGTAAATGTGCCTTTTGGTCTTAGTTTACACAACTGAGGTATGAGCTGTAGGAATTAGACTTATTTAGATGCTGGTCTTGTCAATGTGAGTGAGTTGGCTGTTGTCTCTTTTCATTTTGAGTTGTCAAACATAGCTTTCATGTCTTCACTTGGAACTTTGGCTCCTTTGGTATAAGGGACGAACGATAGATAACTAATCTCGAAATTAAATTTAGAATGAGTCTATCTTGTGTTTGATTGGAATGCAATTGGAGGATAATTTACTACGGAATAACTCGTTACCGACCAATGAACCTTTATAGTCTTAATGAGAGACATGGAATTAATATGACATGGGGTAACAAATCTTTGGTACAACGAAGAAACACACTGCCCACGTGCTAGATCTAAAGATCTCTGACATGAACTATTACTAAATTTTATCCCAATTTTATATGTGGAATACAATAAGCCACATGAACCTTGATAACAGAGAAAAAATGGCTTGTCATTCTGTAGGGACAAAGGGAATTATATTATTAGAGCATTATGAAGGCTGAATAATGAAGGCTACTGAAGTCTAGTTCCATCTGATTAAGCAAAATGACCAATCCATGCTGAGTACCTATGGACTCTTTCAAGTATATGTTGTAGACCTTAAAAAAAATACTAATAAATACCATGAAATATAAGCTGATAAAATTAGCTCCTGGAGTATGGACTAACTCGAGAATTTTTGGTTTCTGAGACTTAAAAATTTATTGACAACTGTTTCAGGAATGGTATACAACAAAGGAGGAACTCATGGCAAGATGGAGTTTATGGCACAACTTGTCCAATCCTACCTGGAAAGAACTTCACTTATACCCTCCAAGCAAAAGACCAGATAGGTAGTTATTTCTACTTCCCATCACTTGCAATGCACAAGGCAGCAGGAGGATATGGTGCCATCAGAGTCTATAGCCGTCCTCGAATTCCAGTACCTTTTGCTCCACCTGCTCATGATTTCACTGTACTAGCTGGAGACTTGTACAAGAGAAGTCACAGGGTGAGTCCATCTGTTTGGCTTAGTTATCTTTTCAAATGTTTTAACTTGAATGATTTTGGTGCTGAATTTTTATGTGGGGATTTGGTTCTTGCAGCAACTGAAGTACATTTTAGATAGTGGTCATGATCTTCCGTTACCTGATGGTCTTATTATCAATGGTCGAGGATGGAACGGATACACATTTACAGTTGATCAAGGTAAACTGCTAACTTGTCTGCTTAAAAGAATCTTGTTTTTCTGTAATGTGCCTTGTCTTCTTAACATTTCTAAACTCAATGTGTAGGTAAGACATATAGGTTCAGGATATCTAATGTGGGGATTGCGACATCAATTAATTTCAGAATTCAAGGGCACACGATGAAACTGGTTGAAGTTGAGGGATCACATACACTTCAGACAACCTACACTTCACTTGACATCCATCTAGGACAATCTTATTCAGTTTTAGTCACTGCCAATCAGCCTCCAAAGGACTACTACATCGTGGTCTCTTCACGATTCACCACACGAGTGCTAACCACTACTGCCGTTCTTCACTACAGCAACTCATGGACAAAAGTCTCTGGACCTCCCCCTGGAGGGCCTACTACTCAAATTAATTGGTCCCTTTACCAGGCCAGATCTATTCGGTAATACATTGTCTTTTGTCTAATTCTCTTACCTTATCAAACAAAAGAAAATGATCCATGATTGATTAGGTAGTATCACTTCCATTCTGTAACTGAAAAGTCTTCATTTGTTGATTGTCAAATCAGTTGGAATCTCACTGCAAGTGGACCAAGGCCTAATCCTCAAGGTTCTTATCATTATGGATTGATCAAGCCTTCGCGCACAA</genome_strand>
        <mrna_strand>ATTTTCCATTTTGGAGAAGAAGGGGAAACCTGAAAAAGTTCATTTTCTTTTCAACAAAGTAGAAAGAGAAACAACACAGAATGAGGGAGAAGAGCCTTAATGTTCATTGTTCTTTCATTTTCACTATTATTCTTGTGTTAGTTACTACTTTACAATGTATATATGCTGACAATCCTTATCGATACTACACTTGGAAAATCACTTACGGAGATATTTACCCTTTGGGTGTCAAACAACAG.......................................................................GGGATCTTGATAAATGGGCAGTTTCCAGGGCCACAGATTGATTGTGTAACAAATGACAATTTGATTATCAGTGTCTACAACTACTTGAGTGAACCTTTTCTCATTTCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGTATACAACAAAGGAGGAACTCATGGCAAGATGGAGTTTATGGCACAACTTGTCCAATCCTACCTGGAAAGAACTTCACTTATACCCTCCAAGCAAAAGACCAGATAGGTAGTTATTTCTACTTCCCATCACTTGCAATGCACAAGGCAGCAGGAGGATATGGTGCCATCAGAGTCTATAGCCGTCCTCGAATTCCAGTACCTTTTGCTCCACCTGCTCATGATTTCACTGTACTAGCTGGAGACTTGTACAAGAGAAGTCACAGG..............................................................................................CAACTGAAGTACATTTTAGATAGTGGTCATGATCTTCCGTTACCTGATGGTCTTATTATCAATGGTCGAGGATGGAACGGATACACATTTACAGTTGATCAAG......................................................................................GTAAGACATATAGGTTCAGGATATCTAATGTGGGGATTGCGACATCAATTAATTTCAGAATTCAAGGGCACACGATGAAACTGGTTGAAGTTGAGGGATCACATACACTTCAGACAACCTACACTTCACTTGACATCCATCTAGGACAATCTTATTCAGTTTTAGTCACTGCCAATCAGCCTCCAAAGGACTACTACATCGTGGTCTCTTCACGATTCACCACACGAGTGCTAACCACTACTGCCCGTCCTCACTACAGCAACTCATGGACAAAAGTCTCTGGACCTCCCCCTGGAGGGCCTACTACTCAAATTAATTGGTCCCTTTACCAAGCCAGATCTATTCG..............................................................................................................................TTGGAATCTCACTGCAAGTGGACCAAGGCCCAATCCTCAAGGTTCTTATCATTATGGATTGATCAACCCTTCGCGCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568738" ref_strand="+" ref_description="SGN-U568738 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|118487967|gb|ABK95805.1| (e_value=9e-39) unknown; (*ATH) AT1G76160.1 (e_value=5e-33)  Symbol: SKS5 | multi-copper oxidase type I family protein, similar to pollen-specific BP10 protein (SP:Q00624)(Brassica napus); contains Pfam profile: PF00394 Multicopper oxidase | chr1:28582836-28586006 REVERSE | Aliases: T23E18.10, T23E18_10, SKS5... ; (*SWP) sp|Q00624|ASOL_BRANA (e_value=3e-18) L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10; ">
      <seq>cttaagggacacaattgcacgttgcaccgtccaggtgtatcctaagtcatggaccgcaatatacatggcattggacaatgtaggaatgtggaacataaggtctgagaattggtcaaggaggtacttgggtcaacaattctacttaagagtttactccccagccaattcttggagagatgaactcccaataccaaagaatgctattctttgtggcaaagctagaggtcatcgtactaggcctctttgaaacaatgtagtagttttctgtcacgagagggtgaccggcgtatatcaatgtgagctaagggaaagatttaatctggaaagagttaaagaagctgagtttgcgctatgacttatagctagtctcttcttttccttctatatcatatttgtatcatgtgtttaattgttcaactgtatcatttcacatctcattattttttccccaaacttttggttaaacctacatagattagctgagaataactttctgtacttcaaggtcattcgagttgttgtttatcttgtattcctaaaatatttggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0167J21-kGm3T/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0167J21.2" temp_strand="+" temp_description="C02HBa0167J21.2  AC215407.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0167J21 sequenced_by:kribb upload_account_name:korea">
        <position start="108127" stop="109372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108427" g_stop="108460" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108461" i_stop="108554" i_length="94">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108555" g_stop="109072" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="552" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0167J21.2" gen_strand="+" ref_id="SGN-U568738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0167J21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108427" e_stop="108460"/>
          <exon e_start="108555" e_stop="109072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAGGGACACAATTGCACGTTGCACCGTCCAGGTATGTCAAAACTCAAAACACATCATCTCAACTTTGTTCAATGCTAAAACATCCTTAAACTTATGTTCCAACGTATTTGTTTGATGTAATTCAGGTGTATCCTAAGTCATGGACCGCAATATACATGGCATTGGACAATGTAGGAATGTGGAACATAAGGTCTGAGAATTGGTCAAGGAGGTACTTGGGTCAACAATTCTACTTAAGAGTTTACTCCCCAGCCAATTCTTGGAGAGATGAACTCCCAATACCAAAGAATGCTATTCTTTGTGGCAAAGCTAGAGGTCATCGTACTAGGCCTCTTTGAAACAATGTAGTAGTTTTCTGTCACGAGAGGGTGACCGGCGTATATCAATGTGAGCTAAGGGAAAGATTTAATCTGGAAAGAGTTAAAGAAGCTGAGTTTGCGCTATGACTTATAGCTAGTCTCTTCTTTTCCTTCTATATCATATTTGTATCATGTGTTTAATTGTTCAACTGTATCATTTCACATCTCATTATTTTTTCCCCAAACTTTTGGTTAAACCTACATAGATTAGCTGAGAATAACTTTCTGTACTTCAAGGTCATTCGAGTTGTTGTTTATCTTGTATTCCTAAAATATTTGGAACA</genome_strand>
        <mrna_strand>CTTAAGGGACACAATTGCACGTTGCACCGTCCAG..............................................................................................GTGTATCCTAAGTCATGGACCGCAATATACATGGCATTGGACAATGTAGGAATGTGGAACATAAGGTCTGAGAATTGGTCAAGGAGGTACTTGGGTCAACAATTCTACTTAAGAGTTTACTCCCCAGCCAATTCTTGGAGAGATGAACTCCCAATACCAAAGAATGCTATTCTTTGTGGCAAAGCTAGAGGTCATCGTACTAGGCCTCTTTGAAACAATGTAGTAGTTTTCTGTCACGAGAGGGTGACCGGCGTATATCAATGTGAGCTAAGGGAAAGATTTAATCTGGAAAGAGTTAAAGAAGCTGAGTTTGCGCTATGACTTATAGCTAGTCTCTTCTTTTCCTTCTATATCATATTTGTATCATGTGTTTAATTGTTCAACTGTATCATTTCACATCTCATTATTTTTTCCCCAAACTTTTGGTTAAACCTACATAGATTAGCTGAGAATAACTTTCTGTACTTCAAGGTCATTCGAGTTGTTGTTTATCTTGTATTCCTAAAATATTTGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6756" PGL_stop="8311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6756" e_stop="8311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="6756" e_stop="8311" e_length="1556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6756" stop="8311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTATCCTTAAACCTGATCCGATTGGCCCTTCCCTCCACCTCTCATTCCCTCCTTCTCCCTTCACCCCACACCACCAAAACACCCAAGATTTCCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAGAAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGTCAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCGTGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACATTGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAACTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGAGCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGAGCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCGTCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGTAGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTTTGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTTCAATCCCTCGTATAGCTTTTCTA</gDNA_template>
            <first_frame> P  Y  P  *  T  *  S  D  W  P  F  P  P  P  L  I  P  S  F  S  L  H  P  T  P  P  K  H  P  R  F  P  P  F  *  *  E  S  S  K  Q  N  P  I  F  I  P  P  T  S  L  F  G  A  A  T  F  L  S  *  K  K  K  H  V  L  F  K  F  D  N  V  G  V  L  K  T  I  S  F  *  I  L  C  P  F  F  P  L  C  C  Q  L  F  S  A  S  *  P  Q  P  I  R  P  F  K  P  L  K  I  I  I  S  Y  P  C  P  M  W  S  P  *  S  A  *  S  N  *  L  C  Q  E  H  T  E  D  Y  *  G  Y  E  A  C  G  C  C  *  S  Q  K  S  T  R  S  C  C  G  C  E  A  F  L  *  D  F  G  *  G  T  L  Q  H  Q  *  A  A  P  D  R  *  H  *  C  T  T  H  Q  S  K  T  C  Q  E  S  G  V  G  G  C  H  R  *  P  G  S  L  W  W  F  *  Q  L  Y  H  Q  K  S  *  G  Q  D  *  R  F  E  S  S  W  P  *  L  H  Y  Y  Q  C  W  Q  K  G  *  F  L  F  P  P  Q  A  L  H  P  C  R  *  I  S  *  R  K  Q  S  A  H  C  *  R  C  S  G  H  C  *  *  C  F  L  I  F  R  E  *  R  G  *  Q  G  *  A  S  L  H  K  V  C  V  F  S  E  I  *  A  S  H  S  H  P  A  S  I  V  T  K  G  R  D  L  *  H  Q  R  E  L  C  *  C  S  *  R  *  V  L  *  V  D  N  K  G  R  E  I  D  S  G  K  R  C  H  E  D  *  D  N  *  F  F  S  N  L  A  I  R  A  G  P  C  S  D  S  *  C  L  A  A  T  L  L  E  Q  S  N  P  E  G  I  A  G  V  I  S  Q  *  A  C  F  *  D  E  C  H  E  Q  C  N  R  *  C  I  *  I  E  E  E  S  I  *  S  V  Q  Q  T  A  S  G  K  D  Y  R  R  N  I  G  D  C  C  W  S  R  C  L  G  L  S  I  S  P  A  I  V  L  L  C  R  Y  N  N  E  V  *  T  I  F  I  F  C  F  S  T  S  Y  R  L  C  A  Q  E  E  N  H  I  I  F  C  T  Q  G  Q  T  K  P  I  F  V  C  Q  F  F  S  A  I  F  V  K  H  E  L  L  K  A  *  N  L  Q  S  L  V  *  L  F   </first_frame>
            <second_frame>  L  I  L  K  P  D  P  I  G  P  S  L  H  L  S  F  P  P  S  P  F  T  P  H  H  Q  N  T  Q  D  F  H  H  S  D  K  N  P  Q  N  K  T  Q  S  L  S  L  P  L  H  S  L  E  Q  P  H  S  *  A  K  R  K  N  M  S  C  S  N  L  T  M  L  V  S  S  K  P  S  L  S  E  S  S  A  L  S  F  R  S  A  V  S  S  F  Q  L  P  N  H  N  L  S  G  P  S  N  P  S  R  S  S  S  V  I  P  V  R  C  G  L  R  D  L  R  D  R  I  D  S  V  K  N  T  Q  K  I  T  E  A  M  K  L  V  A  A  A  K  V  R  R  A  Q  E  A  V  V  G  A  R  P  F  S  E  T  L  V  E  V  L  Y  N  I  N  E  Q  L  Q  T  D  D  I  D  V  P  L  T  K  V  R  P  V  K  K  V  A  L  V  V  V  T  G  D  R  G  L  C  G  G  F  N  N  Y  I  I  K  K  A  E  A  R  I  R  D  L  K  A  L  G  L  D  Y  T  I  I  S  V  G  K  K  G  N  S  Y  F  L  R  R  P  Y  I  P  V  D  K  F  L  E  G  S  N  L  P  T  A  K  D  A  Q  A  I  A  D  D  V  F  S  F  F  V  S  E  E  V  D  K  V  E  L  L  Y  T  K  F  V  S  L  V  K  S  E  P  V  I  H  T  L  L  P  L  S  P  K  G  E  I  C  D  I  N  G  N  C  V  D  A  A  E  D  E  F  F  R  L  T  T  K  E  G  K  L  T  V  E  R  D  V  M  R  T  K  T  T  D  F  S  A  I  L  Q  F  E  Q  D  P  V  Q  I  L  D  A  L  L  P  L  Y  L  N  S  Q  I  L  R  A  L  Q  E  S  L  A  S  E  L  A  S  R  M  S  A  M  S  S  A  T  D  N  A  S  E  L  K  K  N  L  S  R  V  Y  N  R  Q  R  Q  A  K  I  T  G  E  I  L  E  I  V  A  G  A  D  A  L  V  *  A  Y  P  L  Q  L  C  F  S  V  G  T  I  M  K  S  R  Q  F  L  F  S  A  S  Q  P  R  T  D  F  V  H  K  K  R  T  T  L  Y  F  V  H  K  A  R  P  N  L  Y  L  Y  V  N  F  F  L  L  Y  L  *  N  M  N  Y  *  K  P  E  I  F  N  P  S  Y  S  F  S  </second_frame>
            <third_frame>   L  S  L  N  L  I  R  L  A  L  P  S  T  S  H  S  L  L  L  P  S  P  H  T  T  K  T  P  K  I  S  T  I  L  I  R  I  L  K  T  K  P  N  L  Y  P  S  H  F  T  L  W  S  S  H  I  P  E  L  K  E  K  T  C  L  V  Q  I  *  Q  C  W  C  P  Q  N  H  L  F  L  N  P  L  P  F  L  S  A  L  L  S  A  L  F  S  F  L  T  T  T  Y  Q  A  L  Q  T  P  Q  D  H  H  Q  L  S  L  S  D  V  V  S  V  I  C  V  I  E  L  T  L  S  R  T  H  R  R  L  L  R  L  *  S  L  W  L  L  L  K  S  E  E  H  K  K  L  L  W  V  R  G  L  S  L  R  L  W  L  R  Y  F  T  T  S  M  S  S  S  R  Q  M  T  L  M  Y  H  S  P  K  *  D  L  S  R  K  W  R  W  W  L  S  P  V  T  G  V  F  V  V  V  L  T  T  I  S  S  K  K  L  R  P  G  L  E  I  *  K  L  L  A  L  I  T  L  L  S  V  L  A  K  R  V  I  L  I  S  S  A  G  L  T  S  L  *  I  N  F  L  K  E  A  I  C  P  L  L  K  M  L  R  P  L  L  M  M  F  S  H  F  S  *  V  K  R  L  T  R  L  S  F  S  T  Q  S  L  C  L  *  *  N  L  S  Q  S  F  T  P  C  F  H  C  H  Q  R  E  R  F  V  T  S  T  G  T  V  L  M  Q  L  K  M  S  S  L  G  *  Q  Q  R  K  G  N  *  Q  W  K  E  M  S  *  G  L  R  Q  L  I  F  Q  Q  S  C  N  S  S  R  T  L  F  R  F  L  M  P  C  C  H  F  T  *  T  V  K  S  *  G  H  C  R  S  H  *  P  V  S  L  L  L  G  *  V  P  *  A  V  Q  Q  I  M  H  L  N  *  R  R  I  Y  L  E  C  T  T  D  S  V  R  Q  R  L  P  E  K  Y  W  R  L  L  L  E  Q  M  P  W  F  K  H  I  P  C  N  C  A  S  L  *  V  Q  *  *  S  L  D  N  F  Y  F  L  L  L  N  L  V  Q  T  L  C  T  R  R  E  P  H  Y  I  L  Y  T  R  P  D  Q  T  Y  I  C  M  S  I  F  F  C  Y  I  C  K  T  *  I  I  E  S  L  K  S  S  I  P  R  I  A  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6931" stop="8079"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1146</number_coding_nucleotides>
                  <number_encoded_amino_acids>382</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKRKNMSCSNLTMLVSSKPSLSESSALSFRSAVSSFQLPNHNLSGPSNPSRSSSVIPVRCGLRDLRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVGARPFSETLVEVLYNINEQLQTDDIDVPLTKVRPVKKVALVVVTGDRGLCGGFNNYIIKKAEARIRDLKALGLDYTIISVGKKGNSYFLRRPYIPVDKFLEGSNLPTAKDAQAIADDVFSFFVSEEVDKVELLYTKFVSLVKSEPVIHTLLPLSPKGEICDINGNCVDAAEDEFFRLTTKEGKLTVERDVMRTKTTDFSAILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSSATDNASELKKNLSRVYNRQRQAKITGEILEIVAGADALV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10825" PGL_stop="10308"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10825" e_stop="10308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="10825" e_stop="10308" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10825" stop="10308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATACAGAAGAAGAAAAAAATGAAATCAAAGATGAGAAGCAGAAACTTGAGATCTTCAATGCCGTCGTATTATACATATCTGAAGCCAGGAGCGTTAGCCCAAATCAGGAATTCCAAAATCACTGCTAAATCAAAAGTACTGAACAATCCTAAAACTCTAATTGTGATGAACCACCAAACATCCGATTCAGGAATCGGAGTTTCACAGCCAGCACCAATCATGGAGAGCGTTCCTTGCTTTAATTTGAAGATCAAGAGCAACCGCCCTTGCTGCCTTCAGAGGAAGAAGCTCAGTGCAGTTGCACCCATTTTCTATGACCCGTCTCTCGTTACCATATAATCCGCTACTACAGCAAAGGGTTTTTCTTAAATTGAACTTTTTTTCTTATATTACCTGTTTTATTTTTATTTGTGGGTAAAGTTTATGTGGCTTCTGATGAATGTAAGTAATGTATTTACCTTGAATTACGACGAAGAATAGATTTGGATTTGGATTTGTTTTTTTTTTAGAACATA</gDNA_template>
            <first_frame> Q  I  Q  K  K  K  K  M  K  S  K  M  R  S  R  N  L  R  S  S  M  P  S  Y  Y  T  Y  L  K  P  G  A  L  A  Q  I  R  N  S  K  I  T  A  K  S  K  V  L  N  N  P  K  T  L  I  V  M  N  H  Q  T  S  D  S  G  I  G  V  S  Q  P  A  P  I  M  E  S  V  P  C  F  N  L  K  I  K  S  N  R  P  C  C  L  Q  R  K  K  L  S  A  V  A  P  I  F  Y  D  P  S  L  V  T  I  *  S  A  T  T  A  K  G  F  S  *  I  E  L  F  F  L  Y  Y  L  F  Y  F  Y  L  W  V  K  F  M  W  L  L  M  N  V  S  N  V  F  T  L  N  Y  D  E  E  *  I  W  I  W  I  C  F  F  F  R  T   </first_frame>
            <second_frame>  K  Y  R  R  R  K  K  *  N  Q  R  *  E  A  E  T  *  D  L  Q  C  R  R  I  I  H  I  *  S  Q  E  R  *  P  K  S  G  I  P  K  S  L  L  N  Q  K  Y  *  T  I  L  K  L  *  L  *  *  T  T  K  H  P  I  Q  E  S  E  F  H  S  Q  H  Q  S  W  R  A  F  L  A  L  I  *  R  S  R  A  T  A  L  A  A  F  R  G  R  S  S  V  Q  L  H  P  F  S  M  T  R  L  S  L  P  Y  N  P  L  L  Q  Q  R  V  F  L  K  L  N  F  F  S  Y  I  T  C  F  I  F  I  C  G  *  S  L  C  G  F  *  *  M  *  V  M  Y  L  P  *  I  T  T  K  N  R  F  G  F  G  F  V  F  F  L  E  H  </second_frame>
            <third_frame>   N  T  E  E  E  K  N  E  I  K  D  E  K  Q  K  L  E  I  F  N  A  V  V  L  Y  I  S  E  A  R  S  V  S  P  N  Q  E  F  Q  N  H  C  *  I  K  S  T  E  Q  S  *  N  S  N  C  D  E  P  P  N  I  R  F  R  N  R  S  F  T  A  S  T  N  H  G  E  R  S  L  L  *  F  E  D  Q  E  Q  P  P  L  L  P  S  E  E  E  A  Q  C  S  C  T  H  F  L  *  P  V  S  R  Y  H  I  I  R  Y  Y  S  K  G  F  F  L  N  *  T  F  F  L  I  L  P  V  L  F  L  F  V  G  K  V  Y  V  A  S  D  E  C  K  *  C  I  Y  L  E  L  R  R  R  I  D  L  D  L  D  L  F  F  F  *  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10825" stop="10484"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIQKKKKMKSKMRSRNLRSSMPSYYTYLKPGALAQIRNSKITAKSKVLNNPKTLIVMNHQTSDSGIGVSQPAPIMESVPCFNLKIKSNRPCCLQRKKLSAVAPIFYDPSLVTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14110" PGL_stop="13523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14110" e_stop="13523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="14110" e_stop="13523" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14110" stop="13523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600609" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTATGAAATCCTCCATGAGAACTAGAACTTCCAGATCTGCAACCCCATCATTTCACACATTCTTGAAACCAGGTGCACTTGCCCAGCTTAGATACTCCAAAATCTCGGCTAAATCAAGGTTGAAAAATGCTCAATCTTATCAGCACATACCCCTTTCGGTGGTACCTTCATCCCTTCCTTTACCAACCATGGAAAGCCTTCCCTGTTTCAATTCATCGATCCGGATTCGCCAGCCTCGGTTTATCCAGAGAAAGAAGCTCAGCGCCGTTGCGCCCATTTTTACTGAATCCAATTCTTGATCCTTCAGTTGGGTGAGACGCCTCCAGTTTCAACCCCGGTCTGCTGTTGATCTTATTGGGGTTTCAGATTAGTAAGTTATAGTGAAAAAATATACATAAAAAAAAGTGTATCTTTGTTAGATCGGGAGTTCTTTCTCCCCTTCAAAAATTTTAATTTGGTTATTTTCTTGGGGCCTAGTATTGATGTCGGTAAGTGGGGCGAAGATCGTTTGCAGTACATTCTCTTTTCATTTCAACAAACAAAAGATGTAGAAATATACAGTTCATATGAATAAAGAGATCTACAT</gDNA_template>
            <first_frame> N  Y  E  I  L  H  E  N  *  N  F  Q  I  C  N  P  I  I  S  H  I  L  E  T  R  C  T  C  P  A  *  I  L  Q  N  L  G  *  I  K  V  E  K  C  S  I  L  S  A  H  T  P  F  G  G  T  F  I  P  S  F  T  N  H  G  K  P  S  L  F  Q  F  I  D  P  D  S  P  A  S  V  Y  P  E  K  E  A  Q  R  R  C  A  H  F  Y  *  I  Q  F  L  I  L  Q  L  G  E  T  P  P  V  S  T  P  V  C  C  *  S  Y  W  G  F  R  L  V  S  Y  S  E  K  I  Y  I  K  K  S  V  S  L  L  D  R  E  F  F  L  P  F  K  N  F  N  L  V  I  F  L  G  P  S  I  D  V  G  K  W  G  E  D  R  L  Q  Y  I  L  F  S  F  Q  Q  T  K  D  V  E  I  Y  S  S  Y  E  *  R  D  L  H </first_frame>
            <second_frame>  T  M  K  S  S  M  R  T  R  T  S  R  S  A  T  P  S  F  H  T  F  L  K  P  G  A  L  A  Q  L  R  Y  S  K  I  S  A  K  S  R  L  K  N  A  Q  S  Y  Q  H  I  P  L  S  V  V  P  S  S  L  P  L  P  T  M  E  S  L  P  C  F  N  S  S  I  R  I  R  Q  P  R  F  I  Q  R  K  K  L  S  A  V  A  P  I  F  T  E  S  N  S  *  S  F  S  W  V  R  R  L  Q  F  Q  P  R  S  A  V  D  L  I  G  V  S  D  *  *  V  I  V  K  K  Y  T  *  K  K  V  Y  L  C  *  I  G  S  S  F  S  P  S  K  I  L  I  W  L  F  S  W  G  L  V  L  M  S  V  S  G  A  K  I  V  C  S  T  F  S  F  H  F  N  K  Q  K  M  *  K  Y  T  V  H  M  N  K  E  I  Y   </second_frame>
            <third_frame>   L  *  N  P  P  *  E  L  E  L  P  D  L  Q  P  H  H  F  T  H  S  *  N  Q  V  H  L  P  S  L  D  T  P  K  S  R  L  N  Q  G  *  K  M  L  N  L  I  S  T  Y  P  F  R  W  Y  L  H  P  F  L  Y  Q  P  W  K  A  F  P  V  S  I  H  R  S  G  F  A  S  L  G  L  S  R  E  R  S  S  A  P  L  R  P  F  L  L  N  P  I  L  D  P  S  V  G  *  D  A  S  S  F  N  P  G  L  L  L  I  L  L  G  F  Q  I  S  K  L  *  *  K  N  I  H  K  K  K  C  I  F  V  R  S  G  V  L  S  P  L  Q  K  F  *  F  G  Y  F  L  G  A  *  Y  *  C  R  *  V  G  R  R  S  F  A  V  H  S  L  F  I  S  T  N  K  R  C  R  N  I  Q  F  I  *  I  K  R  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14109" stop="13810"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMKSSMRTRTSRSATPSFHTFLKPGALAQLRYSKISAKSRLKNAQSYQHIPLSVVPSSLPLPTMESLPCFNSSIRIRQPRFIQRKKLSAVAPIFTESNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13759" stop="13535"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYWGFRLVSYSEKIYIKKSVSLLDREFFLPFKNFNLVIFLGPSIDVGKWGEDRLQYILFSFQQTKDVEIYSSYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="17423" PGL_stop="18684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17423" e_stop="17742"/>
            <exon e_start="18169" e_stop="18226"/>
            <exon e_start="18323" e_stop="18684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.286" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17423" e_stop="17742" e_length="320"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.876">
            <gDNA_intron_boundary i_start="17743" i_stop="18168" i_length="426"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18169" e_stop="18226" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.286" acc_prob="0.982">
            <gDNA_intron_boundary i_start="18227" i_stop="18322" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="18323" e_stop="18684" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17423" stop="17742"/>
              <exon start="18169" stop="18226"/>
              <exon start="18323" stop="18684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAGATTTTTAAAACCCCATTAAAGCAAATACCTATATAATTGCAGCACAGATACAGAGAGAGAGACGTAGTGTGTTGATGAAGGAGAAGAGAGATACTTCACATGGGATGTTGTATTTGATTCTGTGGTGAACAAGAGTTTTATAAAGAACATTCCTTTTTCTTTATTGCTTGGTTCTTGGGTGGGTCAGCCATGGATGTTCCATTGCCACTGCATAGACCATTGAGTTGCACAAGTGTCTCCAATGCAATAACCCACCTCAAGATCAAACCTTTTCTTGGGTTTGTTTCTCATGGAACCACAAGTCTATCAGTACAA : TCTTCTTCATGGAGGAGGGATGTAATGGTTACTGGGGTTCCATTTCCATTTTGTGCAA : ATTTCTCGGGAAGAAGACGGAGAAAAGTTTCAACTCCTAGGAGTCAACAATCTTCACCTAAGGGGTTTGTGCCAAGGAAGCCTTCAGGGATGAGCACACAAAGAAAAGTTCAGAAGAGCAATGGTGATAAAGAAAGTCAAAGTACTTCAACATCTAAAGAATCTGAAATTTCCAACCAGAAGACGGTTGAAGCAAAAGTTGAAACCAGTGATGATGACACTAAAGGAGTGGTCAGGGACCACAAGTTTCTGGAGGATGAGGATGAAATCAATGGTTCTACTAAATCAATAAGTATGTCACCTGGTCGTGGATCATCTCAATTTGTTGAAAGTGAAGAAATTGGTGATGATGACAATGATGCT</gDNA_template>
            <first_frame> N  R  F  L  K  P  H  *  S  K  Y  L  Y  N  C  S  T  D  T  E  R  E  T  *  C  V  D  E  G  E  E  R  Y  F  T  W  D  V  V  F  D  S  V  V  N  K  S  F  I  K  N  I  P  F  S  L  L  L  G  S  W  V  G  Q  P  W  M  F  H  C  H  C  I  D  H  *  V  A  Q  V  S  P  M  Q  *  P  T  S  R  S  N  L  F  L  G  L  F  L  M  E  P  Q  V  Y  Q  Y  N :   L  L  H  G  G  G  M  *  W  L  L  G  F  H  F  H  F  V  Q  :  I  S  R  E  E  D  G  E  K  F  Q  L  L  G  V  N  N  L  H  L  R  G  L  C  Q  G  S  L  Q  G  *  A  H  K  E  K  F  R  R  A  M  V  I  K  K  V  K  V  L  Q  H  L  K  N  L  K  F  P  T  R  R  R  L  K  Q  K  L  K  P  V  M  M  T  L  K  E  W  S  G  T  T  S  F  W  R  M  R  M  K  S  M  V  L  L  N  Q  *  V  C  H  L  V  V  D  H  L  N  L  L  K  V  K  K  L  V  M  M  T  M  M   </first_frame>
            <second_frame>  I  D  F  *  N  P  I  K  A  N  T  Y  I  I  A  A  Q  I  Q  R  E  R  R  S  V  L  M  K  E  K  R  D  T  S  H  G  M  L  Y  L  I  L  W  *  T  R  V  L  *  R  T  F  L  F  L  Y  C  L  V  L  G  W  V  S  H  G  C  S  I  A  T  A  *  T  I  E  L  H  K  C  L  Q  C  N  N  P  P  Q  D  Q  T  F  S  W  V  C  F  S  W  N  H  K  S  I  S  T   : I  F  F  M  E  E  G  C  N  G  Y  W  G  S  I  S  I  L  C  K :   F  L  G  K  K  T  E  K  S  F  N  S  *  E  S  T  I  F  T  *  G  V  C  A  K  E  A  F  R  D  E  H  T  K  K  S  S  E  E  Q  W  *  *  R  K  S  K  Y  F  N  I  *  R  I  *  N  F  Q  P  E  D  G  *  S  K  S  *  N  Q  *  *  *  H  *  R  S  G  Q  G  P  Q  V  S  G  G  *  G  *  N  Q  W  F  Y  *  I  N  K  Y  V  T  W  S  W  I  I  S  I  C  *  K  *  R  N  W  *  *  *  Q  *  C  </second_frame>
            <third_frame>   *  I  F  K  T  P  L  K  Q  I  P  I  *  L  Q  H  R  Y  R  E  R  D  V  V  C  *  *  R  R  R  E  I  L  H  M  G  C  C  I  *  F  C  G  E  Q  E  F  Y  K  E  H  S  F  F  F  I  A  W  F  L  G  G  S  A  M  D  V  P  L  P  L  H  R  P  L  S  C  T  S  V  S  N  A  I  T  H  L  K  I  K  P  F  L  G  F  V  S  H  G  T  T  S  L  S  V  Q  :  S  S  S  W  R  R  D  V  M  V  T  G  V  P  F  P  F  C  A   : N  F  S  G  R  R  R  R  K  V  S  T  P  R  S  Q  Q  S  S  P  K  G  F  V  P  R  K  P  S  G  M  S  T  Q  R  K  V  Q  K  S  N  G  D  K  E  S  Q  S  T  S  T  S  K  E  S  E  I  S  N  Q  K  T  V  E  A  K  V  E  T  S  D  D  D  T  K  G  V  V  R  D  H  K  F  L  E  D  E  D  E  I  N  G  S  T  K  S  I  S  M  S  P  G  R  G  S  S  Q  F  V  E  S  E  E  I  G  D  D  D  N  D  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17545" stop="17742"/>
                    <exon start="18169" stop="18226"/>
                    <exon start="18323" stop="18684"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCGEQEFYKEHSFFFIAWFLGGSAMDVPLPLHRPLSCTSVSNAITHLKIKPFLGFVSHGTTSLSVQSSSWRRDVMVTGVPFPFCANFSGRRRRKVSTPRSQQSSPKGFVPRKPSGMSTQRKVQKSNGDKESQSTSTSKESEISNQKTVEAKVETSDDDTKGVVRDHKFLEDEDEINGSTKSISMSPGRGSSQFVESEEIGDDDNDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19470" PGL_stop="22058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19470" e_stop="19858"/>
            <exon e_start="20003" e_stop="20217"/>
            <exon e_start="20419" e_stop="20689"/>
            <exon e_start="21117" e_stop="21292"/>
            <exon e_start="21742" e_stop="22058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.877" acc_prob="0.916" e_score="0.995"/>
          <exon-intron don_prob="0.518" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.650" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.853" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="19470" e_stop="19858" e_length="389"/>
          </exon>
          <intron i_serial="1" don_prob="0.877" acc_prob="0.916">
            <gDNA_intron_boundary i_start="19859" i_stop="20002" i_length="144"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20003" e_stop="20217" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.518" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20218" i_stop="20418" i_length="201"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20419" e_stop="20689" e_length="271"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.650">
            <gDNA_intron_boundary i_start="20690" i_stop="21116" i_length="427"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="21117" e_stop="21292" e_length="176"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.853">
            <gDNA_intron_boundary i_start="21293" i_stop="21741" i_length="449"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21742" e_stop="22058" e_length="317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19470" stop="19858"/>
              <exon start="20003" stop="20217"/>
              <exon start="20419" stop="20689"/>
              <exon start="21117" stop="21292"/>
              <exon start="21742" stop="22058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGAAACGGAGAGAGCAGGAGAAACTTGCTAAAGAACAAGCTGAAAGAGAGAGACTAGCAGAAGAACAAAGACGAATAGAAGCAGAGAAAGCTGAAATTGAAGCTGACAGAGCACAAGCAAAGGACGAGACTGCAAAGAAAAAGAAAGTATTGCAAGAATTGATGGCAAAGGCCACAAAGACTCGTGATATCACCTGGTACATAGAGCCAAGTGAATTTAAATGCGAGGACAAGGTCAGGTTATACTATAACAAAAGTTCAGGTCCACTATCCCATGCTAAGGACCTGTGGATCCACGGAGGATATAACAATTGGAAGGATGGTTTGTCTATTGTCAAAAAGCTTGTTAAATCTGAGAGAATAGATGGTGATTGGTGGTATACAGAGG : TTGTTATTCCTGATCAGGCACTTGTCTTGGATTGGGTTTTTGCTGATGGTCCACCCAAGCATGCCATTGCTTATGATAACAATCACCGCCAAGACTTCCATGCCATTGTCCCCAAGCAGATTCCGGAGGAATTATATTGGGTTGAGGAAGAACATCAGATCTTTAAGAAACTTCAGGAGGAGAGAAGGCTTAGAGAAGCCGCTATGCGTGCTAAG : GCTGAAAAAACAGCACTTCTGAAAGCTGAAACAAAGGAAAGAACTATGAAATCATTTTTACTATCTCAGAAGCATGTAGTATATACTGAGCCTCTTGATATCCAAGCTGGAAGCAGCGTCACAGTTTACTATAATCCCGCCAATACAGTACTTAGTGGTAAACCTGAAATTTGGTTCAGATGTTCATTTAATCGCTGGACACACCGCCTAGGTCCATTGCCACCTCAGAAAATGTTGCCTGCTGAAAATGGCACCCATGTCAAAGCAACTG : TCAAGGTTCCATTGGATGCATATATGATGGATTTTGTATTTTCCGAGAGAGAAGATGGTGGTATTTTTGACAATAAGAGCGGAATGGACTATCACATACCCGTGTTTGGAGGAGTCGCTAAAGAACCTCCGATGCATATTGTCCATATTGCTGTCGAAATGGCACCTATTGCAAAG : TAAACCCAAGAACTATGGAGGATTTTTTTGAACCTCAAAGGCATCTCGTGGACCATGCCCAGGAAGGTCTCAGAGGCTTTAAAGAGTTGGGAGGCATCAGGGATGAATGCAAAGGACAGAAATAGATGGAGAATTATCCGTGCTATATATGGTGGACTATTTGAAAAGAAAGGAACTCTATGTGTTTTAAGAGCATAGAGAATAATGTTCAGATGGTCAAGTTAAACTGCATTTTATTGTTACATTTCTGTATAAATGGTTTCAGTACAATCGATGTACTGTTTTGTGATATAATCCAAGGATACCTATTTCGATTT</gDNA_template>
            <first_frame> G  E  T  E  R  A  G  E  T  C  *  R  T  S  *  K  R  E  T  S  R  R  T  K  T  N  R  S  R  E  S  *  N  *  S  *  Q  S  T  S  K  G  R  D  C  K  E  K  E  S  I  A  R  I  D  G  K  G  H  K  D  S  *  Y  H  L  V  H  R  A  K  *  I  *  M  R  G  Q  G  Q  V  I  L  *  Q  K  F  R  S  T  I  P  C  *  G  P  V  D  P  R  R  I  *  Q  L  E  G  W  F  V  Y  C  Q  K  A  C  *  I  *  E  N  R  W  *  L  V  V  Y  R  G :   C  Y  S  *  S  G  T  C  L  G  L  G  F  C  *  W  S  T  Q  A  C  H  C  L  *  *  Q  S  P  P  R  L  P  C  H  C  P  Q  A  D  S  G  G  I  I  L  G  *  G  R  T  S  D  L  *  E  T  S  G  G  E  K  A  *  R  S  R  Y  A  C  *   : G  *  K  N  S  T  S  E  S  *  N  K  G  K  N  Y  E  I  I  F  T  I  S  E  A  C  S  I  Y  *  A  S  *  Y  P  S  W  K  Q  R  H  S  L  L  *  S  R  Q  Y  S  T  *  W  *  T  *  N  L  V  Q  M  F  I  *  S  L  D  T  P  P  R  S  I  A  T  S  E  N  V  A  C  *  K  W  H  P  C  Q  S  N  C :   Q  G  S  I  G  C  I  Y  D  G  F  C  I  F  R  E  R  R  W  W  Y  F  *  Q  *  E  R  N  G  L  S  H  T  R  V  W  R  S  R  *  R  T  S  D  A  Y  C  P  Y  C  C  R  N  G  T  Y  C  K   : V  N  P  R  T  M  E  D  F  F  E  P  Q  R  H  L  V  D  H  A  Q  E  G  L  R  G  F  K  E  L  G  G  I  R  D  E  C  K  G  Q  K  *  M  E  N  Y  P  C  Y  I  W  W  T  I  *  K  E  R  N  S  M  C  F  K  S  I  E  N  N  V  Q  M  V  K  L  N  C  I  L  L  L  H  F  C  I  N  G  F  S  T  I  D  V  L  F  C  D  I  I  Q  G  Y  L  F  R  F </first_frame>
            <second_frame>  E  K  R  R  E  Q  E  K  L  A  K  E  Q  A  E  R  E  R  L  A  E  E  Q  R  R  I  E  A  E  K  A  E  I  E  A  D  R  A  Q  A  K  D  E  T  A  K  K  K  K  V  L  Q  E  L  M  A  K  A  T  K  T  R  D  I  T  W  Y  I  E  P  S  E  F  K  C  E  D  K  V  R  L  Y  Y  N  K  S  S  G  P  L  S  H  A  K  D  L  W  I  H  G  G  Y  N  N  W  K  D  G  L  S  I  V  K  K  L  V  K  S  E  R  I  D  G  D  W  W  Y  T  E   : V  V  I  P  D  Q  A  L  V  L  D  W  V  F  A  D  G  P  P  K  H  A  I  A  Y  D  N  N  H  R  Q  D  F  H  A  I  V  P  K  Q  I  P  E  E  L  Y  W  V  E  E  E  H  Q  I  F  K  K  L  Q  E  E  R  R  L  R  E  A  A  M  R  A  K  :  A  E  K  T  A  L  L  K  A  E  T  K  E  R  T  M  K  S  F  L  L  S  Q  K  H  V  V  Y  T  E  P  L  D  I  Q  A  G  S  S  V  T  V  Y  Y  N  P  A  N  T  V  L  S  G  K  P  E  I  W  F  R  C  S  F  N  R  W  T  H  R  L  G  P  L  P  P  Q  K  M  L  P  A  E  N  G  T  H  V  K  A  T   : V  K  V  P  L  D  A  Y  M  M  D  F  V  F  S  E  R  E  D  G  G  I  F  D  N  K  S  G  M  D  Y  H  I  P  V  F  G  G  V  A  K  E  P  P  M  H  I  V  H  I  A  V  E  M  A  P  I  A  K  :  *  T  Q  E  L  W  R  I  F  L  N  L  K  G  I  S  W  T  M  P  R  K  V  S  E  A  L  K  S  W  E  A  S  G  M  N  A  K  D  R  N  R  W  R  I  I  R  A  I  Y  G  G  L  F  E  K  K  G  T  L  C  V  L  R  A  *  R  I  M  F  R  W  S  S  *  T  A  F  Y  C  Y  I  S  V  *  M  V  S  V  Q  S  M  Y  C  F  V  I  *  S  K  D  T  Y  F  D   </second_frame>
            <third_frame>   R  N  G  E  S  R  R  N  L  L  K  N  K  L  K  E  R  D  *  Q  K  N  K  D  E  *  K  Q  R  K  L  K  L  K  L  T  E  H  K  Q  R  T  R  L  Q  R  K  R  K  Y  C  K  N  *  W  Q  R  P  Q  R  L  V  I  S  P  G  T  *  S  Q  V  N  L  N  A  R  T  R  S  G  Y  T  I  T  K  V  Q  V  H  Y  P  M  L  R  T  C  G  S  T  E  D  I  T  I  G  R  M  V  C  L  L  S  K  S  L  L  N  L  R  E  *  M  V  I  G  G  I  Q  R  :  L  L  F  L  I  R  H  L  S  W  I  G  F  L  L  M  V  H  P  S  M  P  L  L  M  I  T  I  T  A  K  T  S  M  P  L  S  P  S  R  F  R  R  N  Y  I  G  L  R  K  N  I  R  S  L  R  N  F  R  R  R  E  G  L  E  K  P  L  C  V  L  R :   L  K  K  Q  H  F  *  K  L  K  Q  R  K  E  L  *  N  H  F  Y  Y  L  R  S  M  *  Y  I  L  S  L  L  I  S  K  L  E  A  A  S  Q  F  T  I  I  P  P  I  Q  Y  L  V  V  N  L  K  F  G  S  D  V  H  L  I  A  G  H  T  A  *  V  H  C  H  L  R  K  C  C  L  L  K  M  A  P  M  S  K  Q  L  :  S  R  F  H  W  M  H  I  *  W  I  L  Y  F  P  R  E  K  M  V  V  F  L  T  I  R  A  E  W  T  I  T  Y  P  C  L  E  E  S  L  K  N  L  R  C  I  L  S  I  L  L  S  K  W  H  L  L  Q  S :   K  P  K  N  Y  G  G  F  F  *  T  S  K  A  S  R  G  P  C  P  G  R  S  Q  R  L  *  R  V  G  R  H  Q  G  *  M  Q  R  T  E  I  D  G  E  L  S  V  L  Y  M  V  D  Y  L  K  R  K  E  L  Y  V  F  *  E  H  R  E  *  C  S  D  G  Q  V  K  L  H  F  I  V  T  F  L  Y  K  W  F  Q  Y  N  R  C  T  V  L  *  Y  N  P  R  I  P  I  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19471" stop="19858"/>
                    <exon start="20003" stop="20217"/>
                    <exon start="20419" stop="20689"/>
                    <exon start="21117" stop="21292"/>
                    <exon start="21742" stop="21744"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKRREQEKLAKEQAERERLAEEQRRIEAEKAEIEADRAQAKDETAKKKKVLQELMAKATKTRDITWYIEPSEFKCEDKVRLYYNKSSGPLSHAKDLWIHGGYNNWKDGLSIVKKLVKSERIDGDWWYTEVVIPDQALVLDWVFADGPPKHAIAYDNNHRQDFHAIVPKQIPEELYWVEEEHQIFKKLQEERRLREAAMRAKAEKTALLKAETKERTMKSFLLSQKHVVYTEPLDIQAGSSVTVYYNPANTVLSGKPEIWFRCSFNRWTHRLGPLPPQKMLPAENGTHVKATVKVPLDAYMMDFVFSEREDGGIFDNKSGMDYHIPVFGGVAKEPPMHIVHIAVEMAPIAK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21745" stop="21939"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQELWRIFLNLKGISWTMPRKVSEALKSWEASGMNAKDRNRWRIIRAIYGGLFEKKGTLCVLRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="23068" PGL_stop="34578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23068" e_stop="23133"/>
            <exon e_start="23802" e_stop="23907"/>
            <exon e_start="25152" e_stop="25322"/>
            <exon e_start="25847" e_stop="25975"/>
            <exon e_start="29828" e_stop="30010"/>
            <exon e_start="30417" e_stop="30548"/>
            <exon e_start="30643" e_stop="30754"/>
            <exon e_start="32048" e_stop="32171"/>
            <exon e_start="34299" e_stop="34578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="0.985"/>
          <exon-intron don_prob="0.980" acc_prob="0.890" e_score="0.981"/>
          <exon-intron don_prob="1.000" acc_prob="0.903" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.984"/>
          <exon-intron don_prob="0.709" acc_prob="0.486" e_score="0.951"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.926" e_score="0.976"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="23068" e_stop="23133" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23134" i_stop="23801" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="23802" e_stop="23907" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.890">
            <gDNA_intron_boundary i_start="23908" i_stop="25151" i_length="1244"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="25152" e_stop="25322" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.903">
            <gDNA_intron_boundary i_start="25323" i_stop="25846" i_length="524"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="25847" e_stop="25975" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="25976" i_stop="29827" i_length="3852"/>
          </intron>
          <exon e_serial="5" e_score="0.951">
            <gDNA_exon_boundary e_start="29828" e_stop="30010" e_length="183"/>
          </exon>
          <intron i_serial="5" don_prob="0.709" acc_prob="0.486">
            <gDNA_intron_boundary i_start="30011" i_stop="30416" i_length="406"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30417" e_stop="30548" e_length="132"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="30549" i_stop="30642" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30643" e_stop="30754" e_length="112"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="30755" i_stop="32047" i_length="1293"/>
          </intron>
          <exon e_serial="8" e_score="0.976">
            <gDNA_exon_boundary e_start="32048" e_stop="32171" e_length="124"/>
          </exon>
          <intron i_serial="8" don_prob="0.970" acc_prob="0.926">
            <gDNA_intron_boundary i_start="32172" i_stop="34298" i_length="2127"/>
          </intron>
          <exon e_serial="9" e_score="0.950">
            <gDNA_exon_boundary e_start="34299" e_stop="34578" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23068" stop="23133"/>
              <exon start="23802" stop="23907"/>
              <exon start="25152" stop="25322"/>
              <exon start="25847" stop="25975"/>
              <exon start="29828" stop="30010"/>
              <exon start="30417" stop="30548"/>
              <exon start="30643" stop="30754"/>
              <exon start="32048" stop="32171"/>
              <exon start="34299" stop="34578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568314" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAATAAAAGTATGGTTTGGAAAGGTGGAAGGACTCTCGGTCTATTTTTTGGAGCCTCAAAACGG : GTTATTTTGGAAAGGGTGCGTATATGGTTGTAGCAACGACGGTGAACGATTTGGTTTCTTCTGTCATGCGGCTTTGGAGTTCCTTCTGCAAGGTGGATTTAGTCCG : GATATCATTCATTGCCATGATTGGTCTAGTGCTCCTGTTGCTTGGCTCTTTAAGGAACAATATACACACTATGGTCTAAGCAAATCTCGTATAGTCTTCACGATACATAATCTTGAATTTGGGGCAGATCTCATTGGGAGAGCAATGACTCATGCAGACAAAGCTACAACA : GTTTCACCAACTTACTCACAGGAGGTGTCTGGAAACCCTGTAATTGCGCCTCACCTTCACAAGTTCCATGGTATAGTGAATGGGATTGACCCAGATATTTGGGATCCTTTAAATGATAAGTTCATTCCG : ATTCCGTACACCTCGGAAAATGTTGTTGAAGGCAAAACAGCAGCCAAGGAAGCTTTGCAGCAAAAACTTGGACTGAAACAGGCTGACCTTCCTTTGGTAGGAATTATCACCCGCTTAACTCACCAGAAAGGAATCCACCTCATTAAACATGCAATTTGGCGTACCTTGGAACGGAACGGACAG : GTAGTCTTGCTTGGTTCTGCTCCTGATCCTAGGATACAAAACGATTTTGTTAATTTGGCAAATCAATTGCACTCCACATATAATGACCGCGCACGACTCTGTCTAACATATGACGAGCCACTCTCTCACCTG : ATATATGCTGGTGCTGATTTCATTCTAGTTCCTTCAATATTTGAGCCATGTGGACTAACACAACTTACTGCTATGAGATATGGTTCAATTCCAGTCGTGCGTAAAACTGGAG : GACTTTATGATACTGTATTTGATGTTGACCATGACAAAGAGAGAGCACAACAGTGTGGTCTTGGACCTAATGGATTCAGCTTTGATGGAGCAGATGCTGCCGGAGTTGATTATGCTCTGAATAG : AGCTCTCTCTGCTTGGTACGATGGTCGAGATTGGTTCAACTCTTTATGCAAGCAGGTTATGGAACAAGATTGGTCTTGGAACCGACCTGCTCTTGATTATTTGGAGCTTTACCATGCTGCTAGAAAGTTAACGTAGTTAGTTTGTGAGATAGTAGCAGAAAGATTCACGAGATCTGCAGTCTGTACAGGTTCAGTGTTTGCGTCTGGACTGCTTTTTATGTCCTATAACAAAGTATAAATCCTGTCTACCCTGAGATCGATAGCAGACAGTACTCAGTTC</gDNA_template>
            <first_frame> *  N  K  S  M  V  W  K  G  G  R  T  L  G  L  F  F  G  A  S  K  R  :  V  I  L  E  R  V  R  I  W  L  *  Q  R  R  *  T  I  W  F  L  L  S  C  G  F  G  V  P  S  A  R  W  I  *  S   : G  Y  H  S  L  P  *  L  V  *  C  S  C  C  L  A  L  *  G  T  I  Y  T  L  W  S  K  Q  I  S  Y  S  L  H  D  T  *  S  *  I  W  G  R  S  H  W  E  S  N  D  S  C  R  Q  S  Y  N   : S  F  T  N  L  L  T  G  G  V  W  K  P  C  N  C  A  S  P  S  Q  V  P  W  Y  S  E  W  D  *  P  R  Y  L  G  S  F  K  *  *  V  H  S   : D  S  V  H  L  G  K  C  C  *  R  Q  N  S  S  Q  G  S  F  A  A  K  T  W  T  E  T  G  *  P  S  F  G  R  N  Y  H  P  L  N  S  P  E  R  N  P  P  H  *  T  C  N  L  A  Y  L  G  T  E  R  T   : G  S  L  A  W  F  C  S  *  S  *  D  T  K  R  F  C  *  F  G  K  S  I  A  L  H  I  *  *  P  R  T  T  L  S  N  I  *  R  A  T  L  S  P   : D  I  C  W  C  *  F  H  S  S  S  F  N  I  *  A  M  W  T  N  T  T  Y  C  Y  E  I  W  F  N  S  S  R  A  *  N  W  R :   T  L  *  Y  C  I  *  C  *  P  *  Q  R  E  S  T  T  V  W  S  W  T  *  W  I  Q  L  *  W  S  R  C  C  R  S  *  L  C  S  E  *  :  S  S  L  C  L  V  R  W  S  R  L  V  Q  L  F  M  Q  A  G  Y  G  T  R  L  V  L  E  P  T  C  S  *  L  F  G  A  L  P  C  C  *  K  V  N  V  V  S  L  *  D  S  S  R  K  I  H  E  I  C  S  L  Y  R  F  S  V  C  V  W  T  A  F  Y  V  L  *  Q  S  I  N  P  V  Y  P  E  I  D  S  R  Q  Y  S  V  </first_frame>
            <second_frame>  E  I  K  V  W  F  G  K  V  E  G  L  S  V  Y  F  L  E  P  Q  N  G :   L  F  W  K  G  C  V  Y  G  C  S  N  D  G  E  R  F  G  F  F  C  H  A  A  L  E  F  L  L  Q  G  G  F  S  P  :  D  I  I  H  C  H  D  W  S  S  A  P  V  A  W  L  F  K  E  Q  Y  T  H  Y  G  L  S  K  S  R  I  V  F  T  I  H  N  L  E  F  G  A  D  L  I  G  R  A  M  T  H  A  D  K  A  T  T  :  V  S  P  T  Y  S  Q  E  V  S  G  N  P  V  I  A  P  H  L  H  K  F  H  G  I  V  N  G  I  D  P  D  I  W  D  P  L  N  D  K  F  I  P  :  I  P  Y  T  S  E  N  V  V  E  G  K  T  A  A  K  E  A  L  Q  Q  K  L  G  L  K  Q  A  D  L  P  L  V  G  I  I  T  R  L  T  H  Q  K  G  I  H  L  I  K  H  A  I  W  R  T  L  E  R  N  G  Q  :  V  V  L  L  G  S  A  P  D  P  R  I  Q  N  D  F  V  N  L  A  N  Q  L  H  S  T  Y  N  D  R  A  R  L  C  L  T  Y  D  E  P  L  S  H  L  :  I  Y  A  G  A  D  F  I  L  V  P  S  I  F  E  P  C  G  L  T  Q  L  T  A  M  R  Y  G  S  I  P  V  V  R  K  T  G   : G  L  Y  D  T  V  F  D  V  D  H  D  K  E  R  A  Q  Q  C  G  L  G  P  N  G  F  S  F  D  G  A  D  A  A  G  V  D  Y  A  L  N  R :   A  L  S  A  W  Y  D  G  R  D  W  F  N  S  L  C  K  Q  V  M  E  Q  D  W  S  W  N  R  P  A  L  D  Y  L  E  L  Y  H  A  A  R  K  L  T  *  L  V  C  E  I  V  A  E  R  F  T  R  S  A  V  C  T  G  S  V  F  A  S  G  L  L  F  M  S  Y  N  K  V  *  I  L  S  T  L  R  S  I  A  D  S  T  Q  F </second_frame>
            <third_frame>   K  *  K  Y  G  L  E  R  W  K  D  S  R  S  I  F  W  S  L  K  T   : G  Y  F  G  K  G  A  Y  M  V  V  A  T  T  V  N  D  L  V  S  S  V  M  R  L  W  S  S  F  C  K  V  D  L  V  R :   I  S  F  I  A  M  I  G  L  V  L  L  L  L  G  S  L  R  N  N  I  H  T  M  V  *  A  N  L  V  *  S  S  R  Y  I  I  L  N  L  G  Q  I  S  L  G  E  Q  *  L  M  Q  T  K  L  Q  Q :   F  H  Q  L  T  H  R  R  C  L  E  T  L  *  L  R  L  T  F  T  S  S  M  V  *  *  M  G  L  T  Q  I  F  G  I  L  *  M  I  S  S  F  R :   F  R  T  P  R  K  M  L  L  K  A  K  Q  Q  P  R  K  L  C  S  K  N  L  D  *  N  R  L  T  F  L  W  *  E  L  S  P  A  *  L  T  R  K  E  S  T  S  L  N  M  Q  F  G  V  P  W  N  G  T  D  R :   *  S  C  L  V  L  L  L  I  L  G  Y  K  T  I  L  L  I  W  Q  I  N  C  T  P  H  I  M  T  A  H  D  S  V  *  H  M  T  S  H  S  L  T  * :   Y  M  L  V  L  I  S  F  *  F  L  Q  Y  L  S  H  V  D  *  H  N  L  L  L  *  D  M  V  Q  F  Q  S  C  V  K  L  E  :  D  F  M  I  L  Y  L  M  L  T  M  T  K  R  E  H  N  S  V  V  L  D  L  M  D  S  A  L  M  E  Q  M  L  P  E  L  I  M  L  *  I   : E  L  S  L  L  G  T  M  V  E  I  G  S  T  L  Y  A  S  R  L  W  N  K  I  G  L  G  T  D  L  L  L  I  I  W  S  F  T  M  L  L  E  S  *  R  S  *  F  V  R  *  *  Q  K  D  S  R  D  L  Q  S  V  Q  V  Q  C  L  R  L  D  C  F  L  C  P  I  T  K  Y  K  S  C  L  P  *  D  R  *  Q  T  V  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23069" stop="23133"/>
                    <exon start="23802" stop="23907"/>
                    <exon start="25152" stop="25322"/>
                    <exon start="25847" stop="25975"/>
                    <exon start="29828" stop="30010"/>
                    <exon start="30417" stop="30548"/>
                    <exon start="30643" stop="30754"/>
                    <exon start="32048" stop="32171"/>
                    <exon start="34299" stop="34434"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1155</number_coding_nucleotides>
                  <number_encoded_amino_acids>385</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIKVWFGKVEGLSVYFLEPQNGLFWKGCVYGCSNDGERFGFFCHAALEFLLQGGFSPDIIHCHDWSSAPVAWLFKEQYTHYGLSKSRIVFTIHNLEFGADLIGRAMTHADKATTVSPTYSQEVSGNPVIAPHLHKFHGIVNGIDPDIWDPLNDKFIPIPYTSENVVEGKTAAKEALQQKLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSTYNDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQQCGLGPNGFSFDGADAAGVDYALNRALSAWYDGRDWFNSLCKQVMEQDWSWNRPALDYLELYHAARKLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="38255" PGL_stop="39273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38255" e_stop="39273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="38255" e_stop="39273" e_length="1019"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38255" stop="39273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATAACTCTAAAAAAAAATAAAATATTCACATTTTTTTTTCCTTTGTTTTTTACTATTCAAAGAAAAATTAAACTTTGTTTTAGAGCAGAGGAAGATTCCTTATACCATTCTGTTTTATCCTCTTCTTTTTTTCTTAATGATTCCTCAAAATACCAAAAAACAAACATCCCTTTCTCTTAGCTATAAATAGTTGTTAGGCTTCCCCTTTTTAGTACTTCCACCCTAAACAAAAACCAAAGTCCCAAACTTTTTCATTCTTTAAGAGATCTAATTAGAACCAAAGAATGGATGAGTTTAATAGCAACAGAAACAGAGGAAAAACAGAGAAAGATGGAGACTTTGAAGAAGAAGATGTATGGGGTTATGTGAATGAAAGAGATTCATCAACAGTGATTCTTCCAAGAGGAAAAAGTACGTCGCATAAGTCATCATCTTCATCAAGTCCTGTTAAGATTCCAGAATGGTTCAAGAATAGCAATAACAAGAAATCAAGAAGAAGAGTTAGTACTATCATAACAGAGGATGATTCTTCTTTCTCATCAGTTACTTATCCTGGAAATGTCGTGGTCGAAGAAGAAGAAGATGATTATGGTGATGGAATAGTGCCACCCCATGAATATATAGCAAGAAGAGTAGCAAGGAATCAAATAGCTTCATTTTCAATGATGGAAGGTGTTGGAAGGACTCTCAAGGGAAGGGACCTTAGCAAATTGAGGAATGCCATTTTAACTAAGACAGGTTTTTTGGAATAGCTAGCTAGCACCTACTTAGTATTATTATAAGTATAAACTAACAAAATTAGGTCATCCATTTTTCATCAATCATCACATCTTATTATCATTTAGTTTAGTATCATAAGTTCTCATTATGTTTAAAGTATGGCCTTCTTATTTTTAGCTCAGAGATGCAATTTTGGGATTTTTCTTTTATTGGAGAAAAAAAGAAAAGCAGGCTCTGGGATTTTGTTTGGGAGGTTTATAGGAGTATATGCTTTTGTATTCGGTATATGAAATATGAA</gDNA_template>
            <first_frame> H  N  S  K  K  K  *  N  I  H  I  F  F  S  F  V  F  Y  Y  S  K  K  N  *  T  L  F  *  S  R  G  R  F  L  I  P  F  C  F  I  L  F  F  F  S  *  *  F  L  K  I  P  K  N  K  H  P  F  L  L  A  I  N  S  C  *  A  S  P  F  *  Y  F  H  P  K  Q  K  P  K  S  Q  T  F  S  F  F  K  R  S  N  *  N  Q  R  M  D  E  F  N  S  N  R  N  R  G  K  T  E  K  D  G  D  F  E  E  E  D  V  W  G  Y  V  N  E  R  D  S  S  T  V  I  L  P  R  G  K  S  T  S  H  K  S  S  S  S  S  S  P  V  K  I  P  E  W  F  K  N  S  N  N  K  K  S  R  R  R  V  S  T  I  I  T  E  D  D  S  S  F  S  S  V  T  Y  P  G  N  V  V  V  E  E  E  E  D  D  Y  G  D  G  I  V  P  P  H  E  Y  I  A  R  R  V  A  R  N  Q  I  A  S  F  S  M  M  E  G  V  G  R  T  L  K  G  R  D  L  S  K  L  R  N  A  I  L  T  K  T  G  F  L  E  *  L  A  S  T  Y  L  V  L  L  *  V  *  T  N  K  I  R  S  S  I  F  H  Q  S  S  H  L  I  I  I  *  F  S  I  I  S  S  H  Y  V  *  S  M  A  F  L  F  L  A  Q  R  C  N  F  G  I  F  L  L  L  E  K  K  R  K  A  G  S  G  I  L  F  G  R  F  I  G  V  Y  A  F  V  F  G  I  *  N  M   </first_frame>
            <second_frame>  I  T  L  K  K  N  K  I  F  T  F  F  F  P  L  F  F  T  I  Q  R  K  I  K  L  C  F  R  A  E  E  D  S  L  Y  H  S  V  L  S  S  S  F  F  L  N  D  S  S  K  Y  Q  K  T  N  I  P  F  S  *  L  *  I  V  V  R  L  P  L  F  S  T  S  T  L  N  K  N  Q  S  P  K  L  F  H  S  L  R  D  L  I  R  T  K  E  W  M  S  L  I  A  T  E  T  E  E  K  Q  R  K  M  E  T  L  K  K  K  M  Y  G  V  M  *  M  K  E  I  H  Q  Q  *  F  F  Q  E  E  K  V  R  R  I  S  H  H  L  H  Q  V  L  L  R  F  Q  N  G  S  R  I  A  I  T  R  N  Q  E  E  E  L  V  L  S  *  Q  R  M  I  L  L  S  H  Q  L  L  I  L  E  M  S  W  S  K  K  K  K  M  I  M  V  M  E  *  C  H  P  M  N  I  *  Q  E  E  *  Q  G  I  K  *  L  H  F  Q  *  W  K  V  L  E  G  L  S  R  E  G  T  L  A  N  *  G  M  P  F  *  L  R  Q  V  F  W  N  S  *  L  A  P  T  *  Y  Y  Y  K  Y  K  L  T  K  L  G  H  P  F  F  I  N  H  H  I  L  L  S  F  S  L  V  S  *  V  L  I  M  F  K  V  W  P  S  Y  F  *  L  R  D  A  I  L  G  F  F  F  Y  W  R  K  K  E  K  Q  A  L  G  F  C  L  G  G  L  *  E  Y  M  L  L  Y  S  V  Y  E  I  *  </second_frame>
            <third_frame>   *  L  *  K  K  I  K  Y  S  H  F  F  F  L  C  F  L  L  F  K  E  K  L  N  F  V  L  E  Q  R  K  I  P  Y  T  I  L  F  Y  P  L  L  F  F  L  M  I  P  Q  N  T  K  K  Q  T  S  L  S  L  S  Y  K  *  L  L  G  F  P  F  L  V  L  P  P  *  T  K  T  K  V  P  N  F  F  I  L  *  E  I  *  L  E  P  K  N  G  *  V  *  *  Q  Q  K  Q  R  K  N  R  E  R  W  R  L  *  R  R  R  C  M  G  L  C  E  *  K  R  F  I  N  S  D  S  S  K  R  K  K  Y  V  A  *  V  I  I  F  I  K  S  C  *  D  S  R  M  V  Q  E  *  Q  *  Q  E  I  K  K  K  S  *  Y  Y  H  N  R  G  *  F  F  F  L  I  S  Y  L  S  W  K  C  R  G  R  R  R  R  R  *  L  W  *  W  N  S  A  T  P  *  I  Y  S  K  K  S  S  K  E  S  N  S  F  I  F  N  D  G  R  C  W  K  D  S  Q  G  K  G  P  *  Q  I  E  E  C  H  F  N  *  D  R  F  F  G  I  A  S  *  H  L  L  S  I  I  I  S  I  N  *  Q  N  *  V  I  H  F  S  S  I  I  T  S  Y  Y  H  L  V  *  Y  H  K  F  S  L  C  L  K  Y  G  L  L  I  F  S  S  E  M  Q  F  W  D  F  S  F  I  G  E  K  K  K  S  R  L  W  D  F  V  W  E  V  Y  R  S  I  C  F  C  I  R  Y  M  K  Y  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38531" stop="39007"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQRMDEFNSNRNRGKTEKDGDFEEEDVWGYVNERDSSTVILPRGKSTSHKSSSSSSPVKIPEWFKNSNNKKSRRRVSTIITEDDSSFSSVTYPGNVVVEEEEDDYGDGIVPPHEYIARRVARNQIASFSMMEGVGRTLKGRDLSKLRNAILTKTGFLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="47937" PGL_stop="50721"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47937" e_stop="48170"/>
            <exon e_start="48306" e_stop="48367"/>
            <exon e_start="49368" e_stop="49423"/>
            <exon e_start="49517" e_stop="49569"/>
            <exon e_start="50254" e_stop="50372"/>
            <exon e_start="50445" e_stop="50721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="47937" e_stop="48170" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48171" i_stop="48305" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48306" e_stop="48367" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="48368" i_stop="49367" i_length="1000"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49368" e_stop="49423" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="49424" i_stop="49516" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49517" e_stop="49569" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="49570" i_stop="50253" i_length="684"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50254" e_stop="50372" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.983">
            <gDNA_intron_boundary i_start="50373" i_stop="50444" i_length="72"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50445" e_stop="50721" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47937" stop="48170"/>
              <exon start="48306" stop="48367"/>
              <exon start="49368" stop="49423"/>
              <exon start="49517" stop="49569"/>
              <exon start="50254" stop="50372"/>
              <exon start="50445" stop="50721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCAAAACGGCACCGTGTTGACCTTTAAAGACACCGCACGACCTCGTATTATTGATCCGACAAATTCTCACCGAACAGAGTTGGAAGCGAAACAAATACTTGTAAATGGAGTTTCCTTGTGAATCCAAACTTTCTCCAATTCATTAGCAATAAAACCTCTTCAATTTATCCCCTTTAGATACCCAGAAATTGTTCAAAAACCCTCTTCAATTATTCGACTTTCTTCTTTTCTG : GTAGGATCAAAGTTTCAGTCTTGTCATGGCCAAAAGTTCTTTCAAGCTTGAACACCCTTTGG : AGAGGAGGCAGTCAGAATCTTCTCGCATCCGAGAGAAGTATCCTGATCGAATTCCG : GTGATTGTTGAGAAGGCAGAGAAGAGTGATGTCCCTGACATCGATAAAAAGAA : ATACCTTGTCCCAGCTGATTTGACTGTTGGTCAATTTGTTTATGTGGTGCGGAAGAGGATCAAGCTCGGTGCTTCAAAGGCCATCTTTGTCTTTGTCAAGAACACTTTGCCTCCAACAG : CTTCTCTGATGTCTGCAATTTATGAGGAAAATAAAGATGAAGATGGATTTCTCTACATGACATACAGTGGAGAAAACACATTTGGGTTCGTTGAGCTTGGAAATTAATATCTCAAATGTAAATCTGACATTTCCTTGATCTCATCATGAACAGTTAACTGTAGTTGTTGGTTTGCATTCCACATAAAATCAAATTTATATTCCTCTTTGGAATATCCTTATAACTTACAGATGTTCAACTCTTGATCTCTTATCTTATAGTGCCTTTCGTTTAAATC</gDNA_template>
            <first_frame> S  Q  N  G  T  V  L  T  F  K  D  T  A  R  P  R  I  I  D  P  T  N  S  H  R  T  E  L  E  A  K  Q  I  L  V  N  G  V  S  L  *  I  Q  T  F  S  N  S  L  A  I  K  P  L  Q  F  I  P  F  R  Y  P  E  I  V  Q  K  P  S  S  I  I  R  L  S  S  F  L  :  V  G  S  K  F  Q  S  C  H  G  Q  K  F  F  Q  A  *  T  P  F  G :   E  E  A  V  R  I  F  S  H  P  R  E  V  S  *  S  N  S   : G  D  C  *  E  G  R  E  E  *  C  P  *  H  R  *  K  E  :  I  P  C  P  S  *  F  D  C  W  S  I  C  L  C  G  A  E  E  D  Q  A  R  C  F  K  G  H  L  C  L  C  Q  E  H  F  A  S  N  S :   F  S  D  V  C  N  L  *  G  K  *  R  *  R  W  I  S  L  H  D  I  Q  W  R  K  H  I  W  V  R  *  A  W  K  L  I  S  Q  M  *  I  *  H  F  L  D  L  I  M  N  S  *  L  *  L  L  V  C  I  P  H  K  I  K  F  I  F  L  F  G  I  S  L  *  L  T  D  V  Q  L  L  I  S  Y  L  I  V  P  F  V  *  I </first_frame>
            <second_frame>  L  K  T  A  P  C  *  P  L  K  T  P  H  D  L  V  L  L  I  R  Q  I  L  T  E  Q  S  W  K  R  N  K  Y  L  *  M  E  F  P  C  E  S  K  L  S  P  I  H  *  Q  *  N  L  F  N  L  S  P  L  D  T  Q  K  L  F  K  N  P  L  Q  L  F  D  F  L  L  F  W :   *  D  Q  S  F  S  L  V  M  A  K  S  S  F  K  L  E  H  P  L   : E  R  R  Q  S  E  S  S  R  I  R  E  K  Y  P  D  R  I  P  :  V  I  V  E  K  A  E  K  S  D  V  P  D  I  D  K  K  K :   Y  L  V  P  A  D  L  T  V  G  Q  F  V  Y  V  V  R  K  R  I  K  L  G  A  S  K  A  I  F  V  F  V  K  N  T  L  P  P  T   : A  S  L  M  S  A  I  Y  E  E  N  K  D  E  D  G  F  L  Y  M  T  Y  S  G  E  N  T  F  G  F  V  E  L  G  N  *  Y  L  K  C  K  S  D  I  S  L  I  S  S  *  T  V  N  C  S  C  W  F  A  F  H  I  K  S  N  L  Y  S  S  L  E  Y  P  Y  N  L  Q  M  F  N  S  *  S  L  I  L  *  C  L  S  F  K   </second_frame>
            <third_frame>   S  K  R  H  R  V  D  L  *  R  H  R  T  T  S  Y  Y  *  S  D  K  F  S  P  N  R  V  G  S  E  T  N  T  C  K  W  S  F  L  V  N  P  N  F  L  Q  F  I  S  N  K  T  S  S  I  Y  P  L  *  I  P  R  N  C  S  K  T  L  F  N  Y  S  T  F  F  F  S   : G  R  I  K  V  S  V  L  S  W  P  K  V  L  S  S  L  N  T  L  W  :  R  G  G  S  Q  N  L  L  A  S  E  R  S  I  L  I  E  F  R :   *  L  L  R  R  Q  R  R  V  M  S  L  T  S  I  K  R   : N  T  L  S  Q  L  I  *  L  L  V  N  L  F  M  W  C  G  R  G  S  S  S  V  L  Q  R  P  S  L  S  L  S  R  T  L  C  L  Q  Q  :  L  L  *  C  L  Q  F  M  R  K  I  K  M  K  M  D  F  S  T  *  H  T  V  E  K  T  H  L  G  S  L  S  L  E  I  N  I  S  N  V  N  L  T  F  P  *  S  H  H  E  Q  L  T  V  V  V  G  L  H  S  T  *  N  Q  I  Y  I  P  L  W  N  I  L  I  T  Y  R  C  S  T  L  D  L  L  S  Y  S  A  F  R  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48310" stop="48367"/>
                    <exon start="49368" stop="49423"/>
                    <exon start="49517" stop="49569"/>
                    <exon start="50254" stop="50372"/>
                    <exon start="50445" stop="50551"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQSFSLVMAKSSFKLEHPLERRQSESSRIREKYPDRIPVIVEKAEKSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGASKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGFVELGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="51867" PGL_stop="51183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51867" e_stop="51769"/>
            <exon e_start="51632" e_stop="51183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.094" acc_prob="1.000" e_score="0.970"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="51867" e_stop="51769" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.094" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51768" i_stop="51633" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51632" e_stop="51183" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51867" stop="51769"/>
              <exon start="51632" stop="51183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574334" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAGAACCTTTTCTCCAAAGAAGAATAAATAATGTTTGCTTCAAGAGAAAGTAACCTTGTGAGTTCGCTAGCAAGTCTTCTATAAAAGGAACACACAG : GATTTATGGCTAGTGATGGACCAAGTTGGGCAGATCAATGGGGTGCAGGAGGGATAGGTGCCATGGATGAAGATGACAGCTATTATAAAAGCAACAAAGACAGTGAAAACAACAAGAAAGCCACTAGTTCATCTTCATCAGGAATTGGCAAAGTCAAAGCTGTGGCAGTGGCTGGTGCACAGAAAGTGAAAAATGGTCCTTCCATGTTGATCAAATGGGTTAGGAGCAAATCCCAGAAGAAGCATCCCTCCATTTCATGAAATGAGGAGGATCAAGGATTATCTAATCTTTATCTTGCCTTCTGTAAGAGGATTTCAGATCAAACATGTCTATTTATGCGTTGTTATGCTTCCTGGTAGTAGTTTGTTTCCGGGTGAGTTTAAGGTCATGGTGTAAAGAATATGTATGCAATCAGATTACTAATAAGGTAATTACAATTGTTCTCTCTCT</gDNA_template>
            <first_frame> *  R  T  F  S  P  K  K  N  K  *  C  L  L  Q  E  K  V  T  L  *  V  R  *  Q  V  F  Y  K  R  N  T  Q  :  D  L  W  L  V  M  D  Q  V  G  Q  I  N  G  V  Q  E  G  *  V  P  W  M  K  M  T  A  I  I  K  A  T  K  T  V  K  T  T  R  K  P  L  V  H  L  H  Q  E  L  A  K  S  K  L  W  Q  W  L  V  H  R  K  *  K  M  V  L  P  C  *  S  N  G  L  G  A  N  P  R  R  S  I  P  P  F  H  E  M  R  R  I  K  D  Y  L  I  F  I  L  P  S  V  R  G  F  Q  I  K  H  V  Y  L  C  V  V  M  L  P  G  S  S  L  F  P  G  E  F  K  V  M  V  *  R  I  C  M  Q  S  D  Y  *  *  G  N  Y  N  C  S  L  S </first_frame>
            <second_frame>  R  E  P  F  L  Q  R  R  I  N  N  V  C  F  K  R  K  *  P  C  E  F  A  S  K  S  S  I  K  G  T  H  R :   I  Y  G  *  *  W  T  K  L  G  R  S  M  G  C  R  R  D  R  C  H  G  *  R  *  Q  L  L  *  K  Q  Q  R  Q  *  K  Q  Q  E  S  H  *  F  I  F  I  R  N  W  Q  S  Q  S  C  G  S  G  W  C  T  E  S  E  K  W  S  F  H  V  D  Q  M  G  *  E  Q  I  P  E  E  A  S  L  H  F  M  K  *  G  G  S  R  I  I  *  S  L  S  C  L  L  *  E  D  F  R  S  N  M  S  I  Y  A  L  L  C  F  L  V  V  V  C  F  R  V  S  L  R  S  W  C  K  E  Y  V  C  N  Q  I  T  N  K  V  I  T  I  V  L  S   </second_frame>
            <third_frame>   E  N  L  F  S  K  E  E  *  I  M  F  A  S  R  E  S  N  L  V  S  S  L  A  S  L  L  *  K  E  H  T   : G  F  M  A  S  D  G  P  S  W  A  D  Q  W  G  A  G  G  I  G  A  M  D  E  D  D  S  Y  Y  K  S  N  K  D  S  E  N  N  K  K  A  T  S  S  S  S  S  G  I  G  K  V  K  A  V  A  V  A  G  A  Q  K  V  K  N  G  P  S  M  L  I  K  W  V  R  S  K  S  Q  K  K  H  P  S  I  S  *  N  E  E  D  Q  G  L  S  N  L  Y  L  A  F  C  K  R  I  S  D  Q  T  C  L  F  M  R  C  Y  A  S  W  *  *  F  V  S  G  *  V  *  G  H  G  V  K  N  M  Y  A  I  R  L  L  I  R  *  L  Q  L  F  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51781" stop="51769"/>
                    <exon start="51632" stop="51373"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEHTGFMASDGPSWADQWGAGGIGAMDEDDSYYKSNKDSENNKKATSSSSSGIGKVKAVAVAGAQKVKNGPSMLIKWVRSKSQKKHPSIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="52774" PGL_stop="53242"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52774" e_stop="53242"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="52774" e_stop="53242" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52774" stop="53242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAGACTCAGTTGAATGACCACTATGAGAATTGATAATCCAAGAACAATAGTATAGGAGATTCAAAGTTAGATACTCCTTAATATCTACAAACTATACTAGAAATTAGCAAGTAATAGAAAGAAAGAAAAAAAACAGAGTAGTTGATCGAATCACATCAAATGTTAAAAGAATTACTAGTATTAAGACAGTCACTTAGTTCTCCTAGTAGACTTGGATTTCTTCATTTTCCTATTTTTCACATCAAAACTACTCCAACTATATCCACCAGGTATTGCAAATGGCTCTGCCTGTTGTGCTCCATTGCAGCTCTCCTGTGGCAGCTTGCTAGTTGAACACGACCGGCTATTGCTCCTCGACAGCCACGAAGATGACGATGAAGACAATGATGAAGGAAGGGAATAATAATTGTTTCCTGAACTTTCATCCTCAGTATCACCACCATGAAGGAGGTGCCTTGGACTTGAAA</gDNA_template>
            <first_frame> E  R  L  S  *  M  T  T  M  R  I  D  N  P  R  T  I  V  *  E  I  Q  S  *  I  L  L  N  I  Y  K  L  Y  *  K  L  A  S  N  R  K  K  E  K  K  Q  S  S  *  S  N  H  I  K  C  *  K  N  Y  *  Y  *  D  S  H  L  V  L  L  V  D  L  D  F  F  I  F  L  F  F  T  S  K  L  L  Q  L  Y  P  P  G  I  A  N  G  S  A  C  C  A  P  L  Q  L  S  C  G  S  L  L  V  E  H  D  R  L  L  L  L  D  S  H  E  D  D  D  E  D  N  D  E  G  R  E  *  *  L  F  P  E  L  S  S  S  V  S  P  P  *  R  R  C  L  G  L  E  </first_frame>
            <second_frame>  R  D  S  V  E  *  P  L  *  E  L  I  I  Q  E  Q  *  Y  R  R  F  K  V  R  Y  S  L  I  S  T  N  Y  T  R  N  *  Q  V  I  E  R  K  K  K  N  R  V  V  D  R  I  T  S  N  V  K  R  I  T  S  I  K  T  V  T  *  F  S  *  *  T  W  I  S  S  F  S  Y  F  S  H  Q  N  Y  S  N  Y  I  H  Q  V  L  Q  M  A  L  P  V  V  L  H  C  S  S  P  V  A  A  C  *  L  N  T  T  G  Y  C  S  S  T  A  T  K  M  T  M  K  T  M  M  K  E  G  N  N  N  C  F  L  N  F  H  P  Q  Y  H  H  H  E  G  G  A  L  D  L  K </second_frame>
            <third_frame>   E  T  Q  L  N  D  H  Y  E  N  *  *  S  K  N  N  S  I  G  D  S  K  L  D  T  P  *  Y  L  Q  T  I  L  E  I  S  K  *  *  K  E  R  K  K  T  E  *  L  I  E  S  H  Q  M  L  K  E  L  L  V  L  R  Q  S  L  S  S  P  S  R  L  G  F  L  H  F  P  I  F  H  I  K  T  T  P  T  I  S  T  R  Y  C  K  W  L  C  L  L  C  S  I  A  A  L  L  W  Q  L  A  S  *  T  R  P  A  I  A  P  R  Q  P  R  R  *  R  *  R  Q  *  *  R  K  G  I  I  I  V  S  *  T  F  I  L  S  I  T  T  M  K  E  V  P  W  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52960" stop="53178"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSHLVLLVDLDFFIFLFFTSKLLQLYPPGIANGSACCAPLQLSCGSLLVEHDRLLLLDSHEDDDEDNDEGRE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="53886" PGL_stop="53203"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53886" e_stop="53572"/>
            <exon e_start="53333" e_stop="53203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.737" acc_prob="0.954" e_score="0.975"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="53886" e_stop="53572" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.737" acc_prob="0.954">
            <gDNA_intron_boundary i_start="53571" i_stop="53334" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="53333" e_stop="53203" e_length="131"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53886" stop="53572"/>
              <exon start="53333" stop="53203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588784" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAACAAACAAAGACGTCACAGCAGTTTCACTCGAGAGGAAAGGGATTACGTTACCGTTTCTCGAAGAAGCGTTGACATTATTCCGGAACCACGGCGGAGAGCGGCGGCGATACCGGTTGCACCACCGCCAAATACGAAGGAGAAGGAATATGTGAAGAGCCTTAAACCGTCCGTTTGGTTAACAGAGGAATTCCCGTTGAAGACGGAAGAGTTGCTGCCGTTACTTGACATATTAGCGAACAAAGTGAAAGCCGTTAGACGAATGAGAGAGCTGTTAACCACCAAGTTCCCTCCGGGGACATTTCCAGTCAAG : TTGGCAATACCAGTGGTCCCTACAGTGAGGGTAGTAATCACATTCACAAAGTTTGTAGAGTTACAACCCATTGAACAGTTCTACACTCCATTTTCAAGTCCAAGGCACCTCCTTCATGGTGGTGATACTGA</gDNA_template>
            <first_frame> S  N  K  Q  R  R  H  S  S  F  T  R  E  E  R  D  Y  V  T  V  S  R  R  S  V  D  I  I  P  E  P  R  R  R  A  A  A  I  P  V  A  P  P  P  N  T  K  E  K  E  Y  V  K  S  L  K  P  S  V  W  L  T  E  E  F  P  L  K  T  E  E  L  L  P  L  L  D  I  L  A  N  K  V  K  A  V  R  R  M  R  E  L  L  T  T  K  F  P  P  G  T  F  P  V  K  :  L  A  I  P  V  V  P  T  V  R  V  V  I  T  F  T  K  F  V  E  L  Q  P  I  E  Q  F  Y  T  P  F  S  S  P  R  H  L  L  H  G  G  D  T   </first_frame>
            <second_frame>  V  T  N  K  D  V  T  A  V  S  L  E  R  K  G  I  T  L  P  F  L  E  E  A  L  T  L  F  R  N  H  G  G  E  R  R  R  Y  R  L  H  H  R  Q  I  R  R  R  R  N  M  *  R  A  L  N  R  P  F  G  *  Q  R  N  S  R  *  R  R  K  S  C  C  R  Y  L  T  Y  *  R  T  K  *  K  P  L  D  E  *  E  S  C  *  P  P  S  S  L  R  G  H  F  Q  S  S :   W  Q  Y  Q  W  S  L  Q  *  G  *  *  S  H  S  Q  S  L  *  S  Y  N  P  L  N  S  S  T  L  H  F  Q  V  Q  G  T  S  F  M  V  V  I  L  </second_frame>
            <third_frame>   *  Q  T  K  T  S  Q  Q  F  H  S  R  G  K  G  L  R  Y  R  F  S  K  K  R  *  H  Y  S  G  T  T  A  E  S  G  G  D  T  G  C  T  T  A  K  Y  E  G  E  G  I  C  E  E  P  *  T  V  R  L  V  N  R  G  I  P  V  E  D  G  R  V  A  A  V  T  *  H  I  S  E  Q  S  E  S  R  *  T  N  E  R  A  V  N  H  Q  V  P  S  G  D  I  S  S  Q   : V  G  N  T  S  G  P  Y  S  E  G  S  N  H  I  H  K  V  C  R  V  T  T  H  *  T  V  L  H  S  I  F  K  S  K  A  P  P  S  W  W  *  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53886" stop="53572"/>
                    <exon start="53333" stop="53205"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNKQRRHSSFTREERDYVTVSRRSVDIIPEPRRRAAAIPVAPPPNTKEKEYVKSLKPSVWLTEEFPLKTEELLPLLDILANKVKAVRRMRELLTTKFPPGTFPVKLAIPVVPTVRVVITFTKFVELQPIEQFYTPFSSPRHLLHGGDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="67012" PGL_stop="72938"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67012" e_stop="67061"/>
            <exon e_start="67202" e_stop="67294"/>
            <exon e_start="67384" e_stop="67584"/>
            <exon e_start="67805" e_stop="67885"/>
            <exon e_start="67950" e_stop="68045"/>
            <exon e_start="70017" e_stop="70094"/>
            <exon e_start="70168" e_stop="70257"/>
            <exon e_start="70337" e_stop="70404"/>
            <exon e_start="72129" e_stop="72210"/>
            <exon e_start="72704" e_stop="72938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.979" e_score="0.978"/>
          <exon-intron don_prob="0.979" acc_prob="0.998" e_score="0.985"/>
          <exon-intron don_prob="0.989" acc_prob="0.908" e_score="0.976"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67012" e_stop="67061" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67062" i_stop="67201" i_length="140"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67202" e_stop="67294" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.983">
            <gDNA_intron_boundary i_start="67295" i_stop="67383" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67384" e_stop="67584" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.992">
            <gDNA_intron_boundary i_start="67585" i_stop="67804" i_length="220"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67805" e_stop="67885" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.898">
            <gDNA_intron_boundary i_start="67886" i_stop="67949" i_length="64"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67950" e_stop="68045" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="68046" i_stop="70016" i_length="1971"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70017" e_stop="70094" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="70095" i_stop="70167" i_length="73"/>
          </intron>
          <exon e_serial="7" e_score="0.978">
            <gDNA_exon_boundary e_start="70168" e_stop="70257" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.838" acc_prob="0.979">
            <gDNA_intron_boundary i_start="70258" i_stop="70336" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="0.985">
            <gDNA_exon_boundary e_start="70337" e_stop="70404" e_length="68"/>
          </exon>
          <intron i_serial="8" don_prob="0.979" acc_prob="0.998">
            <gDNA_intron_boundary i_start="70405" i_stop="72128" i_length="1724"/>
          </intron>
          <exon e_serial="9" e_score="0.976">
            <gDNA_exon_boundary e_start="72129" e_stop="72210" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.908">
            <gDNA_intron_boundary i_start="72211" i_stop="72703" i_length="493"/>
          </intron>
          <exon e_serial="10" e_score="0.970">
            <gDNA_exon_boundary e_start="72704" e_stop="72938" e_length="235"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67012" stop="67061"/>
              <exon start="67202" stop="67294"/>
              <exon start="67384" stop="67584"/>
              <exon start="67805" stop="67885"/>
              <exon start="67950" stop="68045"/>
              <exon start="70017" stop="70094"/>
              <exon start="70168" stop="70257"/>
              <exon start="70337" stop="70404"/>
              <exon start="72129" stop="72210"/>
              <exon start="72704" stop="72938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67012" stop="67061"/>
              <exon start="67202" stop="67294"/>
              <exon start="67384" stop="67584"/>
              <exon start="67805" stop="67829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTTCTAGTGGTCAACATGATGGTTCAAATGTGCGAGTTGCTTATCAG : GGAATTCCAGGTGCATATAGTGAGGCAGCTGCACTTAAAGCATACCCGAAATGTGAAACTGTCCCATGTGATCAGTTTGAGGCTGCATTTAAG : GCAGTTGAATTATGGTTAGTAGACAAAGCTGTACTCCCGATTGAAAATTCAGTTGCTGGGAGCATCCATCGTAACTACGATCTACTCCTTCGGCATAGGCTGCATATTGTGGGAGAAGTTCAGTTGCTTGTTAACCACTGCCTTCTGGGCTTGCCAGGAATCAGGAAAGAGGAATTAAAGCGCGTCGTGAGCCACCCTCAG : GCACTTGAACAATGCAACATTATGTTGAATGAGTTAGGCGTTGCAAGGCTCAGTAGTGATGATACTTCCAGTGCTGCACAG : ATAGTCGCATCTGAAGGGAAGAGAGATACTGGAGCAGTTGCAAGTGCTCGAGCTGCAGAGATTTATGGGCTCAGCATTCTTGCTGAAAGAATTCAG : GATGATCCAGATAATATCACCAGATTTCTGATACTAGCGAGGGAGCCCATAATTTCGGGAACTGATAGGCCATATAAG : ACTAGCATTGTCTTCACTTTGGAAGAAGGACCTGGAGTTCTATTCAAGGCCTTAGCAGTTTTTGCTCTGAGAGAGATCAATTTAACAAAG : ATTGAAAGCAGACCACAAAAAAAGCGCCCTTTAAGGGTAGTAGATGACTCCAACAAAGGAAGTGCCAA : GTACTTTGACTACCTCTTTTACATTGACTTTGAAGCATCGATGGCAGACCCTCGTGCTCAATATGCTCTTGAGCATCTTCAG : GAATTTGCAAGATTCATTCGAGTTCTTGGCTGCTATCCCATGGACAAAAATCTATGATTGCTTATCTTTCAGAAGTATATTATAGGAGATTCAACTTGTAGAGGAGTTGTTCAACTTAAATTGTTGTATGTGTATTATCTGCTGGGAACTTCCAGTCCAGTAGGCCATTGTTGTGCCTGCCCTGTGCTCTCATATTCTTTCCATCTGCATTTTAGAAAATTTGTTGGTTCAGTTT</gDNA_template>
            <first_frame> I  F  L  V  V  N  M  M  V  Q  M  C  E  L  L  I  R :   E  F  Q  V  H  I  V  R  Q  L  H  L  K  H  T  R  N  V  K  L  S  H  V  I  S  L  R  L  H  L  R :   Q  L  N  Y  G  *  *  T  K  L  Y  S  R  L  K  I  Q  L  L  G  A  S  I  V  T  T  I  Y  S  F  G  I  G  C  I  L  W  E  K  F  S  C  L  L  T  T  A  F  W  A  C  Q  E  S  G  K  R  N  *  S  A  S  *  A  T  L  R :   H  L  N  N  A  T  L  C  *  M  S  *  A  L  Q  G  S  V  V  M  I  L  P  V  L  H  R :   *  S  H  L  K  G  R  E  I  L  E  Q  L  Q  V  L  E  L  Q  R  F  M  G  S  A  F  L  L  K  E  F  R :   M  I  Q  I  I  S  P  D  F  *  Y  *  R  G  S  P  *  F  R  E  L  I  G  H  I  R :   L  A  L  S  S  L  W  K  K  D  L  E  F  Y  S  R  P  *  Q  F  L  L  *  E  R  S  I  *  Q  R :   L  K  A  D  H  K  K  S  A  L  *  G  *  *  M  T  P  T  K  E  V  P   : S  T  L  T  T  S  F  T  L  T  L  K  H  R  W  Q  T  L  V  L  N  M  L  L  S  I  F  R :   N  L  Q  D  S  F  E  F  L  A  A  I  P  W  T  K  I  Y  D  C  L  S  F  R  S  I  L  *  E  I  Q  L  V  E  E  L  F  N  L  N  C  C  M  C  I  I  C  W  E  L  P  V  Q  *  A  I  V  V  P  A  L  C  S  H  I  L  S  I  C  I  L  E  N  L  L  V  Q  F </first_frame>
            <second_frame>  S  F  *  W  S  T  *  W  F  K  C  A  S  C  L  S   : G  N  S  R  C  I  *  *  G  S  C  T  *  S  I  P  E  M  *  N  C  P  M  *  S  V  *  G  C  I  *   : G  S  *  I  M  V  S  R  Q  S  C  T  P  D  *  K  F  S  C  W  E  H  P  S  *  L  R  S  T  P  S  A  *  A  A  Y  C  G  R  S  S  V  A  C  *  P  L  P  S  G  L  A  R  N  Q  E  R  G  I  K  A  R  R  E  P  P  S   : G  T  *  T  M  Q  H  Y  V  E  *  V  R  R  C  K  A  Q  *  *  *  Y  F  Q  C  C  T   : D  S  R  I  *  R  E  E  R  Y  W  S  S  C  K  C  S  S  C  R  D  L  W  A  Q  H  S  C  *  K  N  S   : G  *  S  R  *  Y  H  Q  I  S  D  T  S  E  G  A  H  N  F  G  N  *  *  A  I  *   : D  *  H  C  L  H  F  G  R  R  T  W  S  S  I  Q  G  L  S  S  F  C  S  E  R  D  Q  F  N  K   : D  *  K  Q  T  T  K  K  A  P  F  K  G  S  R  *  L  Q  Q  R  K  C  Q  :  V  L  *  L  P  L  L  H  *  L  *  S  I  D  G  R  P  S  C  S  I  C  S  *  A  S  S   : G  I  C  K  I  H  S  S  S  W  L  L  S  H  G  Q  K  S  M  I  A  Y  L  S  E  V  Y  Y  R  R  F  N  L  *  R  S  C  S  T  *  I  V  V  C  V  L  S  A  G  N  F  Q  S  S  R  P  L  L  C  L  P  C  A  L  I  F  F  P  S  A  F  *  K  I  C  W  F  S   </second_frame>
            <third_frame>   L  S  S  G  Q  H  D  G  S  N  V  R  V  A  Y  Q  :  G  I  P  G  A  Y  S  E  A  A  A  L  K  A  Y  P  K  C  E  T  V  P  C  D  Q  F  E  A  A  F  K  :  A  V  E  L  W  L  V  D  K  A  V  L  P  I  E  N  S  V  A  G  S  I  H  R  N  Y  D  L  L  L  R  H  R  L  H  I  V  G  E  V  Q  L  L  V  N  H  C  L  L  G  L  P  G  I  R  K  E  E  L  K  R  V  V  S  H  P  Q  :  A  L  E  Q  C  N  I  M  L  N  E  L  G  V  A  R  L  S  S  D  D  T  S  S  A  A  Q  :  I  V  A  S  E  G  K  R  D  T  G  A  V  A  S  A  R  A  A  E  I  Y  G  L  S  I  L  A  E  R  I  Q  :  D  D  P  D  N  I  T  R  F  L  I  L  A  R  E  P  I  I  S  G  T  D  R  P  Y  K  :  T  S  I  V  F  T  L  E  E  G  P  G  V  L  F  K  A  L  A  V  F  A  L  R  E  I  N  L  T  K  :  I  E  S  R  P  Q  K  K  R  P  L  R  V  V  D  D  S  N  K  G  S  A  K :   Y  F  D  Y  L  F  Y  I  D  F  E  A  S  M  A  D  P  R  A  Q  Y  A  L  E  H  L  Q  :  E  F  A  R  F  I  R  V  L  G  C  Y  P  M  D  K  N  L  *  L  L  I  F  Q  K  Y  I  I  G  D  S  T  C  R  G  V  V  Q  L  K  L  L  Y  V  Y  Y  L  L  G  T  S  S  P  V  G  H  C  C  A  C  P  V  L  S  Y  S  F  H  L  H  F  R  K  F  V  G  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67014" stop="67061"/>
                    <exon start="67202" stop="67294"/>
                    <exon start="67384" stop="67584"/>
                    <exon start="67805" stop="67885"/>
                    <exon start="67950" stop="68045"/>
                    <exon start="70017" stop="70094"/>
                    <exon start="70168" stop="70257"/>
                    <exon start="70337" stop="70404"/>
                    <exon start="72129" stop="72210"/>
                    <exon start="72704" stop="72760"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSGQHDGSNVRVAYQGIPGAYSEAAALKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVAGSIHRNYDLLLRHRLHIVGEVQLLVNHCLLGLPGIRKEELKRVVSHPQALEQCNIMLNELGVARLSSDDTSSAAQIVASEGKRDTGAVASARAAEIYGLSILAERIQDDPDNITRFLILAREPIISGTDRPYKTSIVFTLEEGPGVLFKALAVFALREINLTKIESRPQKKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQYALEHLQEFARFIRVLGCYPMDKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="79132" PGL_stop="74103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79132" e_stop="79099"/>
            <exon e_start="78863" e_stop="78739"/>
            <exon e_start="78662" e_stop="78538"/>
            <exon e_start="76782" e_stop="76718"/>
            <exon e_start="76641" e_stop="76429"/>
            <exon e_start="75323" e_stop="75276"/>
            <exon e_start="75163" e_stop="75056"/>
            <exon e_start="74689" e_stop="74537"/>
            <exon e_start="74427" e_stop="74103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79132" e_stop="79099" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79098" i_stop="78864" i_length="235"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78863" e_stop="78739" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.804" acc_prob="0.840">
            <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78662" e_stop="78538" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.916">
            <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76782" e_stop="76718" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.934">
            <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76641" e_stop="76429" e_length="213"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76428" i_stop="75324" i_length="1105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75323" e_stop="75276" e_length="48"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="75275" i_stop="75164" i_length="112"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75163" e_stop="75056" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.927" acc_prob="0.974">
            <gDNA_intron_boundary i_start="75055" i_stop="74690" i_length="366"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="74689" e_stop="74537" e_length="153"/>
          </exon>
          <intron i_serial="8" don_prob="0.954" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74536" i_stop="74428" i_length="109"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="74427" e_stop="74103" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79132" stop="79099"/>
              <exon start="78863" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76429"/>
              <exon start="75323" stop="75276"/>
              <exon start="75163" stop="75056"/>
              <exon start="74689" stop="74537"/>
              <exon start="74427" stop="74103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTACCACGACTGATCTCACTCTCTCTCAATCTG : TAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA : GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA : ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT : GTTTACAAACTGGTTGAGGAGATAAAGGCCAAGGGTGGAACTGTCACAAGGGAGCCTGGTCCTGTCAAGGGTGGATCTAGTGTTATTGCTTTTGTCAAAGATCCTGATGGCTACCTATTTGAAATCATCCAGAGAGAGTCTACTCCTGAACCACTTTGCCAAGTGATGCTTCGTGTGGGGGATCTTGAACGTGCGATCAAATTCTACGAAAAG : GCACTTGGGATGCAAGTGGTGAAGAAAGTTGATAGACCAGAGCATAAG : TATACCATTGCTATGATGGGATATGCTCCAGAGAAAGAGACGACTGTTATTGAGTTGACATACAACTATGGTGTGACTGAATACACAAAGGGAAATGCATACGCACAG : ATTGCAATAGGCACTGATGATGTCTACAAAAGCGCGAAGGTTGTCAATCTTGCTATCCAAGAGCTCGGAGGAAAGATAACTAGACAGCCAGGATCAATTCCTGGACTTAACACCAAGATAACTTCATTTCTGGATCCAGATGGCTGGAAAACA : GTGCTGGTTGACAATAAGGATTTTCTGAAGGAGCTAGAATCGTCCAAGTAACTGGTCAAGAAGATGCTTGTTCGTATTTCACTAGATATCAATAAATAATCTGCTGTGGTGTTTATCTTCACATGCAGACTAATGCATATGTGTCTAGTACCGTAATCAACTACTCCTTTAAGCACTTCTCCAGACATTTTCGTGTGTTACAATGTGAATTTGACATCTCTAACTTGCTGAGTATGTCTTGCTGGTTCCTATTCACCTTTTGAGTTTGTGTATGTATGAAATTATCCAATCAGCAAGTGCAGACATCAAATCTTTCATTCATCAT</gDNA_template>
            <first_frame> F  T  T  T  D  L  T  L  S  Q  S   : V  E  H  G  G  S  K  C  T  S  C  T  K  Y  *  V  V  G  V  A  K  E  R  *  A  Q  N  V  A  C  C  I  S  C  R  *  P  *  T  Y  H  Q  :  V  L  H  R  M  F  W  D  E  I  V  E  A  E  R  Y  S  R  G  E  V  F  E  C  F  S  W  F  W  P  *  R  V  S  L  C  G  *  V  D  I  * :   L  W  S  *  *  V  *  H  R  N  R  L  W  A  F  C  Y  C  H  T  R   : C  L  Q  T  G  *  G  D  K  G  Q  G  W  N  C  H  K  G  A  W  S  C  Q  G  W  I  *  C  Y  C  F  C  Q  R  S  *  W  L  P  I  *  N  H  P  E  R  V  Y  S  *  T  T  L  P  S  D  A  S  C  G  G  S  *  T  C  D  Q  I  L  R  K   : G  T  W  D  A  S  G  E  E  S  *  *  T  R  A  *   : V  Y  H  C  Y  D  G  I  C  S  R  E  R  D  D  C  Y  *  V  D  I  Q  L  W  C  D  *  I  H  K  G  K  C  I  R  T   : D  C  N  R  H  *  *  C  L  Q  K  R  E  G  C  Q  S  C  Y  P  R  A  R  R  K  D  N  *  T  A  R  I  N  S  W  T  *  H  Q  D  N  F  I  S  G  S  R  W  L  E  N   : S  A  G  *  Q  *  G  F  S  E  G  A  R  I  V  Q  V  T  G  Q  E  D  A  C  S  Y  F  T  R  Y  Q  *  I  I  C  C  G  V  Y  L  H  M  Q  T  N  A  Y  V  S  S  T  V  I  N  Y  S  F  K  H  F  S  R  H  F  R  V  L  Q  C  E  F  D  I  S  N  L  L  S  M  S  C  W  F  L  F  T  F  *  V  C  V  C  M  K  L  S  N  Q  Q  V  Q  T  S  N  L  S  F  I   </first_frame>
            <second_frame>  L  P  R  L  I  S  L  S  L  N  L  :  *  N  M  A  E  A  S  A  P  A  V  P  S  T  E  L  L  E  W  P  K  K  D  K  R  R  M  L  H  A  V  Y  R  V  G  D  L  E  R  T  I  K :   F  Y  T  E  C  F  G  M  K  L  L  R  Q  R  D  I  P  E  E  K  Y  S  N  A  F  L  G  F  G  P  E  E  S  H  F  V  V  E  L  T  Y   : N  Y  G  V  D  K  Y  D  I  G  T  G  F  G  H  F  A  I  A  T  P  D  :  V  Y  K  L  V  E  E  I  K  A  K  G  G  T  V  T  R  E  P  G  P  V  K  G  G  S  S  V  I  A  F  V  K  D  P  D  G  Y  L  F  E  I  I  Q  R  E  S  T  P  E  P  L  C  Q  V  M  L  R  V  G  D  L  E  R  A  I  K  F  Y  E  K  :  A  L  G  M  Q  V  V  K  K  V  D  R  P  E  H  K  :  Y  T  I  A  M  M  G  Y  A  P  E  K  E  T  T  V  I  E  L  T  Y  N  Y  G  V  T  E  Y  T  K  G  N  A  Y  A  Q  :  I  A  I  G  T  D  D  V  Y  K  S  A  K  V  V  N  L  A  I  Q  E  L  G  G  K  I  T  R  Q  P  G  S  I  P  G  L  N  T  K  I  T  S  F  L  D  P  D  G  W  K  T  :  V  L  V  D  N  K  D  F  L  K  E  L  E  S  S  K  *  L  V  K  K  M  L  V  R  I  S  L  D  I  N  K  *  S  A  V  V  F  I  F  T  C  R  L  M  H  M  C  L  V  P  *  S  T  T  P  L  S  T  S  P  D  I  F  V  C  Y  N  V  N  L  T  S  L  T  C  *  V  C  L  A  G  S  Y  S  P  F  E  F  V  Y  V  *  N  Y  P  I  S  K  C  R  H  Q  I  F  H  S  S  </second_frame>
            <third_frame>   Y  H  D  *  S  H  S  L  S  I  C :   R  T  W  R  K  Q  V  H  Q  L  Y  Q  V  L  S  C  W  S  G  Q  R  K  I  S  A  E  C  C  M  L  Y  I  V  S  V  T  L  N  V  P  S   : S  F  T  Q  N  V  L  G  *  N  C  *  G  R  E  I  F  Q  R  R  S  I  R  M  L  F  L  V  L  A  L  K  S  L  T  L  W  L  S  *  H  I  :  I  M  E  L  I  S  M  T  S  E  P  A  L  G  I  L  L  L  P  H  Q  M :   F  T  N  W  L  R  R  *  R  P  R  V  E  L  S  Q  G  S  L  V  L  S  R  V  D  L  V  L  L  L  L  S  K  I  L  M  A  T  Y  L  K  S  S  R  E  S  L  L  L  N  H  F  A  K  *  C  F  V  W  G  I  L  N  V  R  S  N  S  T  K  R :   H  L  G  C  K  W  *  R  K  L  I  D  Q  S  I  S :   I  P  L  L  *  W  D  M  L  Q  R  K  R  R  L  L  L  S  *  H  T  T  M  V  *  L  N  T  Q  R  E  M  H  T  H  R :   L  Q  *  A  L  M  M  S  T  K  A  R  R  L  S  I  L  L  S  K  S  S  E  E  R  *  L  D  S  Q  D  Q  F  L  D  L  T  P  R  *  L  H  F  W  I  Q  M  A  G  K  Q :   C  W  L  T  I  R  I  F  *  R  S  *  N  R  P  S  N  W  S  R  R  C  L  F  V  F  H  *  I  S  I  N  N  L  L  W  C  L  S  S  H  A  D  *  C  I  C  V  *  Y  R  N  Q  L  L  L  *  A  L  L  Q  T  F  S  C  V  T  M  *  I  *  H  L  *  L  A  E  Y  V  L  L  V  P  I  H  L  L  S  L  C  M  Y  E  I  I  Q  S  A  S  A  D  I  K  S  F  I  H  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78860" stop="78739"/>
                    <exon start="78662" stop="78538"/>
                    <exon start="76782" stop="76718"/>
                    <exon start="76641" stop="76429"/>
                    <exon start="75323" stop="75276"/>
                    <exon start="75163" stop="75056"/>
                    <exon start="74689" stop="74537"/>
                    <exon start="74427" stop="74377"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMAEASAPAVPSTELLEWPKKDKRRMLHAVYRVGDLERTIKFYTECFGMKLLRQRDIPEEKYSNAFLGFGPEESHFVVELTYNYGVDKYDIGTGFGHFAIATPDVYKLVEEIKAKGGTVTREPGPVKGGSSVIAFVKDPDGYLFEIIQRESTPEPLCQVMLRVGDLERAIKFYEKALGMQVVKKVDRPEHKYTIAMMGYAPEKETTVIELTYNYGVTEYTKGNAYAQIAIGTDDVYKSAKVVNLAIQELGGKITRQPGSIPGLNTKITSFLDPDGWKTVLVDNKDFLKELESSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79093" e_stop="78739"/>
            <exon e_start="78662" e_stop="78538"/>
            <exon e_start="76782" e_stop="76718"/>
            <exon e_start="76641" e_stop="76628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.804" acc_prob="0.840" e_score="0.969"/>
          <exon-intron don_prob="0.967" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.934" e_score="0.938"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="79093" e_stop="78739" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="0.804" acc_prob="0.840">
            <gDNA_intron_boundary i_start="78738" i_stop="78663" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78662" e_stop="78538" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.916">
            <gDNA_intron_boundary i_start="78537" i_stop="76783" i_length="1755"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="76782" e_stop="76718" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.934">
            <gDNA_intron_boundary i_start="76717" i_stop="76642" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76641" e_stop="76628" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79093" stop="78739"/>
              <exon start="78662" stop="78538"/>
              <exon start="76782" stop="76718"/>
              <exon start="76641" stop="76628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTTCCTCTCTCTACATATTTTTTTTCTTTAATTTAGGGTTTTACTCTGTTCTTCAATTCTTGATGGCATTGTAAAGAGTTTCTAGTAAATGCTTTGAGTAATTTTTCATCTTGGAAGATTTGTAGGGATTTTGTGATAAAAATTAGTGATACTTCTGTATGATTTGTGTTCTTTGTTGTTTGTTTTGAGATTTCTTTCTTTCTTAGAATCTACAATTTTTATTTGTAGTAGAACATGGCGGAAGCAAGTGCACCAGCTGTACCAAGTACTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCAGAATGTTGCATGCTGTATATCGTGTCGGTGACCTTGAACGTACCATCAA : GTTTTACACAGAATGTTTTGGGATGAAATTGTTGAGGCAGAGAGATATTCCAGAGGAGAAGTATTCGAATGCTTTTCTTGGTTTTGGCCCTGAAGAGTCTCACTTTGTGGTTGAGTTGACATATA : ATTATGGAGTTGATAAGTATGACATCGGAACCGGCTTTGGGCATTTTGCTATTGCCACACCAGAT : GTTTACAAACTGGT</gDNA_template>
            <first_frame> T  F  L  S  L  H  I  F  F  L  *  F  R  V  L  L  C  S  S  I  L  D  G  I  V  K  S  F  *  *  M  L  *  V  I  F  H  L  G  R  F  V  G  I  L  *  *  K  L  V  I  L  L  Y  D  L  C  S  L  L  F  V  L  R  F  L  S  F  L  E  S  T  I  F  I  C  S  R  T  W  R  K  Q  V  H  Q  L  Y  Q  V  L  S  C  W  S  G  Q  R  K  I  S  A  E  C  C  M  L  Y  I  V  S  V  T  L  N  V  P  S   : S  F  T  Q  N  V  L  G  *  N  C  *  G  R  E  I  F  Q  R  R  S  I  R  M  L  F  L  V  L  A  L  K  S  L  T  L  W  L  S  *  H  I  :  I  M  E  L  I  S  M  T  S  E  P  A  L  G  I  L  L  L  P  H  Q  M :   F  T  N  W  </first_frame>
            <second_frame>  L  S  S  L  Y  I  F  F  F  F  N  L  G  F  Y  S  V  L  Q  F  L  M  A  L  *  R  V  S  S  K  C  F  E  *  F  F  I  L  E  D  L  *  G  F  C  D  K  N  *  *  Y  F  C  M  I  C  V  L  C  C  L  F  *  D  F  F  L  S  *  N  L  Q  F  L  F  V  V  E  H  G  G  S  K  C  T  S  C  T  K  Y  *  V  V  G  V  A  K  E  R  *  A  Q  N  V  A  C  C  I  S  C  R  *  P  *  T  Y  H  Q  :  V  L  H  R  M  F  W  D  E  I  V  E  A  E  R  Y  S  R  G  E  V  F  E  C  F  S  W  F  W  P  *  R  V  S  L  C  G  *  V  D  I  * :   L  W  S  *  *  V  *  H  R  N  R  L  W  A  F  C  Y  C  H  T  R   : C  L  Q  T  G </second_frame>
            <third_frame>   F  P  L  S  T  Y  F  F  S  L  I  *  G  F  T  L  F  F  N  S  *  W  H  C  K  E  F  L  V  N  A  L  S  N  F  S  S  W  K  I  C  R  D  F  V  I  K  I  S  D  T  S  V  *  F  V  F  F  V  V  C  F  E  I  S  F  F  L  R  I  Y  N  F  Y  L  *  *  N  M  A  E  A  S  A  P  A  V  P  S  T  E  L  L  E  W  P  K  K  D  K  R  R  M  L  H  A  V  Y  R  V  G  D  L  E  R  T  I  K :   F  Y  T  E  C  F  G  M  K  L  L  R  Q  R  D  I  P  E  E  K  Y  S  N  A  F  L  G  F  G  P  E  E  S  H  F  V  V  E  L  T  Y   : N  Y  G  V  D  K  Y  D  I  G  T  G  F  G  H  F  A  I  A  T  P  D  :  V  Y  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78860" stop="78739"/>
                    <exon start="78662" stop="78538"/>
                    <exon start="76782" stop="76718"/>
                    <exon start="76641" stop="76630"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMAEASAPAVPSTELLEWPKKDKRRMLHAVYRVGDLERTIKFYTECFGMKLLRQRDIPEEKYSNAFLGFGPEESHFVVELTYNYGVDKYDIGTGFGHFAIATPDVYKL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78952" stop="78739"/>
                    <exon start="78662" stop="78637"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLVILLYDLCSLLFVLRFLSFLESTIFICSRTWRKQVHQLYQVLSCWSGQRKISAECCMLYIVSVTLNVPSSFTQNVLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="87693" PGL_stop="90864"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87693" e_stop="87881"/>
            <exon e_start="88274" e_stop="88429"/>
            <exon e_start="88542" e_stop="88668"/>
            <exon e_start="89424" e_stop="90864"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87693" e_stop="87881" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88274" e_stop="88429" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88542" e_stop="88668" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89424" e_stop="90864" e_length="1441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87693" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="90864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCACGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG : TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG : AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG : TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAACTGGACGACCATACAGAGTATTCAGCCTTGATACTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACAGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAGTTGAAGTTCAGGCGTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGCCTTTGAGGAGAGCTCTAAAGGGCTTACGCGCCTGGATCACAGGCCAGCGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTGTTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAGTGGAACCCTGTGGCTAATGTGGACGGAAAAGATATTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGCCAGTTCTACCAGGGCAACACGAGAGAGAGGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCAAGGATGAAACTGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTTGGCAGCTTCCCTACAATACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAGAGAAGAGGGACGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTTTGATCAATCACACCATTGTTTTGACAAAGAGGGAGATATGTGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAGATGCAGCACCTTCCTCTTTGTGCTTTATAAGTTGTTTCTTCTTGTATAGTGTTTTTAGTATATGGTGGCTCTCCCTTCTCCTCCTCTGCATTTTATTTTCCTTAGAAATCCTACATAAGAAGACAAATAAGTTTTTATTACTTTCCCATCCCATCCTTCTCAAATAGAGAAGTATATATGTCTTGAGGGCTCAATTTTGTTGAGTGTTTACTTCTCCATATTATAGATTTTGCCCATCTTCTCTCATTCTTCTTCTAATTCCCTTGATGTCTCTATAATTAAGAACAACTCTCTCTTAACTTTTATTAGAGAATATTTGGCTGT</gDNA_template>
            <first_frame> T  H  G  L  L  P  I  T  I  F  F  Y  F  S  Q  A  I  S  L  L  E  Q  I  V  L  C  L  C  E  I  N  L  S  L  L  *  K  W  L  *  L  S  L  L  H  L  Q  F  M  A  L  C  L  L  H  L  L  L  M  N  N  P  K  :  Y  P  N  W  V  P  F  S  H  W  I  G  L  N  Y  C  R  Q  L  F  *  I  L  G  G  V  R  Q  *  S  H  C  M  L  N  L  R  G  M  I  Q  *  F  R  Q  Q  L  P  S  W  L  L  :  R  *  E  R  V  L  R  Q  R  T  L  R  N  W  L  R  S  F  K  M  L  P  L  L  R  L  W  T  K  H  L  R  N  L  E  M  T  L  L  L  L  S   : V  V  L  K  M  L  L  *  *  S  T  H  I  *  L  D  D  H  T  E  Y  S  A  L  I  L  G  G  *  T  R  R  H  T  N  Y  L  T  Q  W  R  S  T  M  A  F  A  L  N  T  C  S  L  I  Q  L  K  F  R  R  W  L  G  P  K  G  F  S  L  S  M  R  M  A  T  K  S  V  A  V  *  G  R  L  G  L  *  G  E  L  *  R  A  Y  A  P  G  S  Q  A  S  V  K  I  S  P  L  E  L  D  Q  K  S  P  L  F  R  W  T  L  L  L  R  G  W  M  A  V  L  V  A  W  *  S  G  T  L  W  L  M  W  T  E  K  I  F  G  T  S  C  V  P  *  M  C  L  *  T  H  C  I  H  K  D  M  Y  P  L  D  A  N  L  A  Q  G  Q  F  Y  Q  G  N  T  R  E  R  E  D  G  G  G  K  M  P  R  P  R  S  V  A  C  T  R  A  T  S  R  M  K  L  *  M  A  L  P  K  Q  M  V  L  L  P  L  L  I  F  L  I  P  R  T  L  L  P  *  V  S  L  E  L  R  T  *  *  N  W  K  T  E  E  S  L  G  S  L  F  F  M  H  L  G  A  N  F  A  R  Q  W  K  D  P  M  L  N  W  L  R  S  W  L  V  L  V  *  K  *  G  N  S  G  Q  M  V  T  R  K  H  L  H  K  K  N  C  S  L  A  A  S  L  Q  Y  S  S  S  Q  S  T  L  Q  R  P  L  S  T  L  Q  R  R  G  T  *  T  P  C  W  L  L  *  M  L  S  D  E  K  Q  M  V  F  L  I  N  H  T  I  V  L  T  K  R  E  I  C  G  S  C  R  I  *  *  R  M  V  A  R  C  S  T  F  L  F  V  L  Y  K  L  F  L  L  V  *  C  F  *  Y  M  V  A  L  P  S  P  P  L  H  F  I  F  L  R  N  P  T  *  E  D  K  *  V  F  I  T  F  P  S  H  P  S  Q  I  E  K  Y  I  C  L  E  G  S  I  L  L  S  V  Y  F  S  I  L  *  I  L  P  I  F  S  H  S  S  S  N  S  L  D  V  S  I  I  K  N  N  S  L  L  T  F  I  R  E  Y  L  A   </first_frame>
            <second_frame>  L  T  D  F  F  P  S  P  S  S  S  I  F  H  K  Q  F  L  C  W  N  K  L  F  F  V  S  V  K  L  I  S  L  C  C  R  N  G  F  D  F  H  F  F  I  C  N  S  W  L  F  V  F  F  I  F  F  L  *  T  T  Q  S :   I  P  I  G  Y  L  S  A  I  G  *  A  S  T  I  V  V  N  C  F  E  F  S  E  A  F  G  S  E  A  I  V  C  *  T  *  E  E  *  F  N  S  S  V  S  S  Y  H  R  G  S  * :   G  R  R  E  C  *  G  R  G  L  *  E  I  G  *  G  A  S  K  C  F  P  S  *  G  Y  G  Q  S  T  *  E  I  W  R  *  H  C  Y  C  F  Q  :  W  C  *  R  C  C  F  D  R  V  R  T  F  N  W  T  T  I  Q  S  I  Q  P  *  Y  W  E  V  E  P  G  D  I  P  I  I  *  H  S  G  E  A  L  W  H  S  H  *  I  H  V  P  *  F  S  *  S  S  G  V  G  *  D  Q  R  A  F  L  F  L  *  G  W  P  P  R  V  L  P  C  K  E  G  *  A  F  E  E  S  S  K  G  L  T  R  L  D  H  R  P  A  *  R  S  V  P  W  N  S  I  R  N  P  H  C  S  G  G  P  F  F  *  G  V  G  W  R  C  W  *  L  G  E  V  E  P  C  G  *  C  G  R  K  R  Y  L  E  L  P  A  C  H  E  C  A  C  E  L  I  A  F  T  R  I  C  I  H  W  M  R  T  L  H  K  A  S  S  T  R  A  T  R  E  R  G  K  M  V  V  G  R  C  Q  G  Q  G  V  W  L  A  Q  G  Q  H  Q  G  *  N  C  K  W  R  C  P  N  K  W  Y  C  Y  R  C  *  Y  F  *  Y  Q  G  H  C  Y  L  E  *  A  W  S  *  E  P  S  K  I  G  R  P  K  R  A  L  A  R  C  S  L  C  T  L  V  P  I  L  P  G  N  G  R  I  L  C  *  I  G  *  E  V  G  W  F  W  C  E  S  R  E  I  Q  G  R  W  *  P  E  S  I  C  T  R  R  I  A  A  W  Q  L  P  Y  N  T  L  L  P  K  A  L  F  K  G  H  *  V  P  F  R  E  E  G  R  R  L  L  A  G  F  C  E  C  S  Q  M  K  S  K  W  C  F  *  S  I  T  P  L  F  *  Q  R  G  R  Y  V  G  V  V  E  Y  S  E  E  W  W  Q  D  A  A  P  S  S  L  C  F  I  S  C  F  F  L  Y  S  V  F  S  I  W  W  L  S  L  L  L  L  C  I  L  F  S  L  E  I  L  H  K  K  T  N  K  F  L  L  L  S  H  P  I  L  L  K  *  R  S  I  Y  V  L  R  A  Q  F  C  *  V  F  T  S  P  Y  Y  R  F  C  P  S  S  L  I  L  L  L  I  P  L  M  S  L  *  L  R  T  T  L  S  *  L  L  L  E  N  I  W  L  </second_frame>
            <third_frame>   S  R  T  S  S  H  H  H  L  L  L  F  F  T  S  N  F  F  A  G  T  N  C  S  L  S  L  *  N  *  S  L  F  V  V  E  M  A  L  T  F  T  S  S  S  A  I  H  G  S  L  S  S  S  S  S  S  Y  E  Q  P  K   : V  S  Q  L  G  T  F  Q  P  L  D  R  P  Q  L  L  S  S  T  V  L  N  S  R  R  R  S  A  V  K  P  L  Y  A  E  P  K  R  N  D  S  I  V  P  S  A  A  T  I  V  A  P   : E  V  G  E  S  V  E  A  E  D  F  E  K  L  A  K  E  L  Q  N  A  S  P  L  E  V  M  D  K  A  L  E  K  F  G  D  D  I  A  I  A  F  S :   G  A  E  D  V  A  L  I  E  Y  A  H  L  T  G  R  P  Y  R  V  F  S  L  D  T  G  R  L  N  P  E  T  Y  Q  L  F  D  T  V  E  K  H  Y  G  I  R  I  E  Y  M  F  P  D  S  V  E  V  Q  A  L  V  R  T  K  G  L  F  S  F  Y  E  D  G  H  Q  E  C  C  R  V  R  K  V  R  P  L  R  R  A  L  K  G  L  R  A  W  I  T  G  Q  R  K  D  Q  S  P  G  T  R  S  E  I  P  I  V  Q  V  D  P  S  F  E  G  L  D  G  G  A  G  S  L  V  K  W  N  P  V  A  N  V  D  G  K  D  I  W  N  F  L  R  A  M  N  V  P  V  N  S  L  H  S  Q  G  Y  V  S  I  G  C  E  P  C  T  R  P  V  L  P  G  Q  H  E  R  E  G  R  W  W  W  E  D  A  K  A  K  E  C  G  L  H  K  G  N  I  K  D  E  T  V  N  G  A  A  Q  T  N  G  T  A  T  V  A  D  I  F  D  T  K  D  I  V  T  L  S  K  P  G  V  E  N  L  V  K  L  E  D  R  R  E  P  W  L  V  V  L  Y  A  P  W  C  Q  F  C  Q  A  M  E  G  S  Y  V  E  L  A  E  K  L  A  G  S  G  V  K  V  G  K  F  R  A  D  G  D  Q  K  A  F  A  Q  E  E  L  Q  L  G  S  F  P  T  I  L  F  F  P  K  H  S  S  K  A  I  K  Y  P  S  E  K  R  D  V  D  S  L  L  A  F  V  N  A  L  R  *  K  A  N  G  V  F  D  Q  S  H  H  C  F  D  K  E  G  D  M  W  E  L  *  N  I  V  K  N  G  G  K  M  Q  H  L  P  L  C  A  L  *  V  V  S  S  C  I  V  F  L  V  Y  G  G  S  P  F  S  S  S  A  F  Y  F  P  *  K  S  Y  I  R  R  Q  I  S  F  Y  Y  F  P  I  P  S  F  S  N  R  E  V  Y  M  S  *  G  L  N  F  V  E  C  L  L  L  H  I  I  D  F  A  H  L  L  S  F  F  F  *  F  P  *  C  L  Y  N  *  E  Q  L  S  L  N  F  Y  *  R  I  F  G  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87785" stop="87881"/>
                    <exon start="88274" stop="88429"/>
                    <exon start="88542" stop="88668"/>
                    <exon start="89424" stop="90447"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1401</number_coding_nucleotides>
                  <number_encoded_amino_acids>467</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFVVEMALTFTSSSAIHGSLSSSSSSYEQPKVSQLGTFQPLDRPQLLSSTVLNSRRRSAVKPLYAEPKRNDSIVPSAATIVAPEVGESVEAEDFEKLAKELQNASPLEVMDKALEKFGDDIAIAFSGAEDVALIEYAHLTGRPYRVFSLDTGRLNPETYQLFDTVEKHYGIRIEYMFPDSVEVQALVRTKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPIVQVDPSFEGLDGGAGSLVKWNPVANVDGKDIWNFLRAMNVPVNSLHSQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKDETVNGAAQTNGTATVADIFDTKDIVTLSKPGVENLVKLEDRREPWLVVLYAPWCQFCQAMEGSYVELAEKLAGSGVKVGKFRADGDQKAFAQEELQLGSFPTILFFPKHSSKAIKYPSEKRDVDSLLAFVNALR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90489" stop="90707"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRGRYVGVVEYSEEWWQDAAPSSLCFISCFFLYSVFSIWWLSLLLLCILFSLEILHKKTNKFLLLSHPILLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87697" e_stop="87881"/>
            <exon e_start="88274" e_stop="88429"/>
            <exon e_start="88542" e_stop="88668"/>
            <exon e_start="89424" e_stop="89465"/>
            <exon e_start="90048" e_stop="90333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="87697" e_stop="87881" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87882" i_stop="88273" i_length="392"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88274" e_stop="88429" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="88430" i_stop="88541" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88542" e_stop="88668" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88669" i_stop="89423" i_length="755"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89424" e_stop="89465" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="89466" i_stop="90047" i_length="582"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="90048" e_stop="90333" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87697" stop="87881"/>
              <exon start="88274" stop="88429"/>
              <exon start="88542" stop="88668"/>
              <exon start="89424" stop="89465"/>
              <exon start="90048" stop="90333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590583" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGGACTTCTTCCCATCACCATCTTCTTCTATTTTTCACAAGCAATTTCTTTGCTGGAACAAATTGTTCTTTGTCTCTGTGAAATTAATCTCTCTTTGTTGTAGAAATGGCTTTGACTTTCACTTCTTCATCTGCAATTCATGGCTCTTTGTCTTCTTCATCTTCTTCTTATGAACAACCCAAAG : TATCCCAATTGGGTACCTTTCAGCCATTGGATAGGCCTCAACTATTGTCGTCAACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGAAGCCATTGTATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTG : AGGTAGGAGAGAGTGTTGAGGCAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTTGAGAAATTTGGAGATGACATTGCTATTGCTTTCAG : TGGTGCTGAAGATGTTGCTTTGATAGAGTACGCACATTTAAC : TGTAAATGGCGCTGCCCAAACAAATGGTACTGCTACCGTTGCTGATATTTTTGATACCAAGGACATTGTTACCTTGAGTAAGCCTGGAGTTGAGAACCTAGTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGGCAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTAGGGAAATTCAGGGCAGATGGTGACCAGAAAGCATTTGCACAAGAAGAATTGCAGCTT</gDNA_template>
            <first_frame> T  D  F  F  P  S  P  S  S  S  I  F  H  K  Q  F  L  C  W  N  K  L  F  F  V  S  V  K  L  I  S  L  C  C  R  N  G  F  D  F  H  F  F  I  C  N  S  W  L  F  V  F  F  I  F  F  L  *  T  T  Q  S :   I  P  I  G  Y  L  S  A  I  G  *  A  S  T  I  V  V  N  C  F  E  F  S  E  A  F  G  S  E  A  I  V  C  *  T  *  E  E  *  F  N  S  S  V  S  S  Y  H  R  G  S  * :   G  R  R  E  C  *  G  R  G  L  *  E  I  G  *  G  A  S  K  C  F  P  S  *  G  Y  G  Q  S  T  *  E  I  W  R  *  H  C  Y  C  F  Q  :  W  C  *  R  C  C  F  D  R  V  R  T  F  N  :  C  K  W  R  C  P  N  K  W  Y  C  Y  R  C  *  Y  F  *  Y  Q  G  H  C  Y  L  E  *  A  W  S  *  E  P  S  K  I  G  R  P  K  R  A  L  A  R  C  S  L  C  T  L  V  P  I  L  P  G  N  G  R  I  L  C  *  I  G  *  E  V  G  W  F  W  C  E  S  R  E  I  Q  G  R  W  *  P  E  S  I  C  T  R  R  I  A  A  </first_frame>
            <second_frame>  R  T  S  S  H  H  H  L  L  L  F  F  T  S  N  F  F  A  G  T  N  C  S  L  S  L  *  N  *  S  L  F  V  V  E  M  A  L  T  F  T  S  S  S  A  I  H  G  S  L  S  S  S  S  S  S  Y  E  Q  P  K   : V  S  Q  L  G  T  F  Q  P  L  D  R  P  Q  L  L  S  S  T  V  L  N  S  R  R  R  S  A  V  K  P  L  Y  A  E  P  K  R  N  D  S  I  V  P  S  A  A  T  I  V  A  P   : E  V  G  E  S  V  E  A  E  D  F  E  K  L  A  K  E  L  Q  N  A  S  P  L  E  V  M  D  K  A  L  E  K  F  G  D  D  I  A  I  A  F  S :   G  A  E  D  V  A  L  I  E  Y  A  H  L  T :   V  N  G  A  A  Q  T  N  G  T  A  T  V  A  D  I  F  D  T  K  D  I  V  T  L  S  K  P  G  V  E  N  L  V  K  L  E  D  R  R  E  P  W  L  V  V  L  Y  A  P  W  C  Q  F  C  Q  A  M  E  G  S  Y  V  E  L  A  E  K  L  A  G  S  G  V  K  V  G  K  F  R  A  D  G  D  Q  K  A  F  A  Q  E  E  L  Q  L </second_frame>
            <third_frame>   G  L  L  P  I  T  I  F  F  Y  F  S  Q  A  I  S  L  L  E  Q  I  V  L  C  L  C  E  I  N  L  S  L  L  *  K  W  L  *  L  S  L  L  H  L  Q  F  M  A  L  C  L  L  H  L  L  L  M  N  N  P  K  :  Y  P  N  W  V  P  F  S  H  W  I  G  L  N  Y  C  R  Q  L  F  *  I  L  G  G  V  R  Q  *  S  H  C  M  L  N  L  R  G  M  I  Q  *  F  R  Q  Q  L  P  S  W  L  L  :  R  *  E  R  V  L  R  Q  R  T  L  R  N  W  L  R  S  F  K  M  L  P  L  L  R  L  W  T  K  H  L  R  N  L  E  M  T  L  L  L  L  S   : V  V  L  K  M  L  L  *  *  S  T  H  I  *   : L  *  M  A  L  P  K  Q  M  V  L  L  P  L  L  I  F  L  I  P  R  T  L  L  P  *  V  S  L  E  L  R  T  *  *  N  W  K  T  E  E  S  L  G  S  L  F  F  M  H  L  G  A  N  F  A  R  Q  W  K  D  P  M  L  N  W  L  R  S  W  L  V  L  V  *  K  *  G  N  S  G  Q  M  V  T  R  K  H  L  H  K  K  N  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87785" stop="87881"/>
                    <exon start="88274" stop="88429"/>
                    <exon start="88542" stop="88668"/>
                    <exon start="89424" stop="89465"/>
                    <exon start="90048" stop="90333"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFVVEMALTFTSSSAIHGSLSSSSSSYEQPKVSQLGTFQPLDRPQLLSSTVLNSRRRSAVKPLYAEPKRNDSIVPSAATIVAPEVGESVEAEDFEKLAKELQNASPLEVMDKALEKFGDDIAIAFSGAEDVALIEYAHLTVNGAAQTNGTATVADIFDTKDIVTLSKPGVENLVKLEDRREPWLVVLYAPWCQFCQAMEGSYVELAEKLAGSGVKVGKFRADGDQKAFAQEELQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="91621" PGL_stop="95729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91621" e_stop="91714"/>
            <exon e_start="91893" e_stop="92523"/>
            <exon e_start="92616" e_stop="93612"/>
            <exon e_start="95520" e_stop="95729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.716" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91621" e_stop="91714" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.941">
            <gDNA_intron_boundary i_start="91715" i_stop="91892" i_length="178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91893" e_stop="92523" e_length="631"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.716">
            <gDNA_intron_boundary i_start="92524" i_stop="92615" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92616" e_stop="93612" e_length="997"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="93613" i_stop="95519" i_length="1907"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="95520" e_stop="95729" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91621" stop="91714"/>
              <exon start="91893" stop="92523"/>
              <exon start="92616" stop="93612"/>
              <exon start="95520" stop="95729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564419" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTGAAAACAATAGAACCCTAGGTTTCCCAAAATTTCCTTCTCCTTTCTCTCTTTGTTTTGGTGTCGTCTGCGTCAATTTTCTTCCTCCTCAG : ATAATGGATGATAAGGTTGTTACTATGGATGATCAAATTGTATCAGAGCTTACAATCCCAGAAAATGTCGCCAAAGAATTATTACTTGTGTCAAACTCATCTTCTTTAGAAACGGCACTCGACAAGCTGATACAACTTTCCAAGGAGGGGGGTGGACGGTTAGATCTGTCGTCCAAGAATGTTGTCACCACTGTCCTCCATCTCTGCCAGTCTCTGTCATCTATCTCTTACCGTAACCTCCTTTTATTGTCTCTTAAGGTACTCAGAAATCTGTGTGCTGGGGAGATAAGAAATCAGAATGGCTTTCTTCAACAAAGAGGAGTTGAAATTGTCTTGGATGTTATTATGTCTGTAGGACTTTCTCCTGATCCTGATTGTATGATTATTCGAGTGGGGCTGCAACTTCTAGGAAACTACTCAGTGGGTGGAGGAGAACGTCAATGTGATGTGTGGTACCAATTGTTTCCTCATAAGTTCTTGAAGATTGCTAGAGTTAGAAACCAGGAAATATGTGATCCTTTATGTATGGTCATTTACACTTGCTGTGATGGTACGGATGGACTGCTTACCGATTTATGTTCAGAGCAAGGGTTGCCCATTCTGTTTGAAATTTTGCGTACTGCATCAGCCG : TTGGTCTTAAAGAAGTTTGGTTGAAGTTGTTACTCTCAAAACTTTGCATTGAGGGCTCCCACATCTCATCAATTTTCTTCAAATTACATTCATATCCTTCCGTTGAGGACAATGGTGTTGTTACACATGTAGCTGATCAGTTTGTTATTGAGCAGCCTTATCTCTTGAGTATACTTTCAGAAATCTTAAATGAACGAGTAGAGCATATTGTTGTTTCTCATGATTTTGCTCGAAGTATCTTTGGGATATTGAAGAGTGCTTCTGGGGTTGTTGATTTTTCAATAAGAGGGAAAAGTGATCTTCCAGTGGGGTCTGCTCCTATTGATGTTCTAGGATACTCTCTCACCCTCATGAGAGATATTTGCGCTTCTGATCACTTATCAAGCTCTAAGGAAGAAAGTTCAAAGGATGTTGTGGACGTACTTGTTTCCTCTGGGCTTATTGAATTTCTTTTGAACTTGCTTCGGGATCTTGAACCTCCAACGACAATTAGGAACGCAATGAAGCCGGATCAGATCAAGGAGGGGACAATACCTTCTTCATTTAGGTGTTGTCCATACCAAGGTTTCCGGAGAGATATTGTTGCCATCCTTGGAAATTGTGCTTATAGGAGAAGGCATGTCCAAGATGAGATTAGGGATAAAAATGGGATCCTTTTACTGCTACAACAGTGTGTTATAGATGAAGATAATCCTTTCTTAAGGGAGTGGGGAATCTGGTGTGTGCGAAACCTATTGGAAGGGAATGCAGAAAACCAAGGGGCTATTACTGATTTGGAGCTTCAAGGAACCGTAGATGTTCCAGAACTTGTTAGACTTGGGCTTCGAGTAGAAGTTGATCCCGTAACTCGACGCACAAAGCTTGTGAATTCCTCATGATATGTCAAGTGATGAAAGTTAAAAATTGCAACTTCTGGAGTTGACAAACTGATTGTTCAGGAAACTTGTTTCTTGGTCTGCTTAAGATTGATTCACATGTTCTGGAATGTCCATAAGAG : AGTACATACATTACAGACAATAAAACAGATGGATTTTGATACCAAGGAATGAAGAGAGTGTTGAAGTCATGGACGCTCAGAGTACATTACAATTTACAAACCTATAATTTCTTCTTTTTGAAAAATTGAAAACTTAAGTGGTATAAATAAAGGCCACTGTAATTTATTTCTGAAATAGCTTTAATAGAAAAGCTGTTGTGTATTTGTCTT</gDNA_template>
            <first_frame> N  *  K  Q  *  N  P  R  F  P  K  I  S  F  S  F  L  S  L  F  W  C  R  L  R  Q  F  S  S  S  S   : D  N  G  *  *  G  C  Y  Y  G  *  S  N  C  I  R  A  Y  N  P  R  K  C  R  Q  R  I  I  T  C  V  K  L  I  F  F  R  N  G  T  R  Q  A  D  T  T  F  Q  G  G  G  W  T  V  R  S  V  V  Q  E  C  C  H  H  C  P  P  S  L  P  V  S  V  I  Y  L  L  P  *  P  P  F  I  V  S  *  G  T  Q  K  S  V  C  W  G  D  K  K  S  E  W  L  S  S  T  K  R  S  *  N  C  L  G  C  Y  Y  V  C  R  T  F  S  *  S  *  L  Y  D  Y  S  S  G  A  A  T  S  R  K  L  L  S  G  W  R  R  T  S  M  *  C  V  V  P  I  V  S  S  *  V  L  E  D  C  *  S  *  K  P  G  N  M  *  S  F  M  Y  G  H  L  H  L  L  *  W  Y  G  W  T  A  Y  R  F  M  F  R  A  R  V  A  H  S  V  *  N  F  A  Y  C  I  S  R :   W  S  *  R  S  L  V  E  V  V  T  L  K  T  L  H  *  G  L  P  H  L  I  N  F  L  Q  I  T  F  I  S  F  R  *  G  Q  W  C  C  Y  T  C  S  *  S  V  C  Y  *  A  A  L  S  L  E  Y  T  F  R  N  L  K  *  T  S  R  A  Y  C  C  F  S  *  F  C  S  K  Y  L  W  D  I  E  E  C  F  W  G  C  *  F  F  N  K  R  E  K  *  S  S  S  G  V  C  S  Y  *  C  S  R  I  L  S  H  P  H  E  R  Y  L  R  F  *  S  L  I  K  L  *  G  R  K  F  K  G  C  C  G  R  T  C  F  L  W  A  Y  *  I  S  F  E  L  A  S  G  S  *  T  S  N  D  N  *  E  R  N  E  A  G  S  D  Q  G  G  D  N  T  F  F  I  *  V  L  S  I  P  R  F  P  E  R  Y  C  C  H  P  W  K  L  C  L  *  E  K  A  C  P  R  *  D  *  G  *  K  W  D  P  F  T  A  T  T  V  C  Y  R  *  R  *  S  F  L  K  G  V  G  N  L  V  C  A  K  P  I  G  R  E  C  R  K  P  R  G  Y  Y  *  F  G  A  S  R  N  R  R  C  S  R  T  C  *  T  W  A  S  S  R  S  *  S  R  N  S  T  H  K  A  C  E  F  L  M  I  C  Q  V  M  K  V  K  N  C  N  F  W  S  *  Q  T  D  C  S  G  N  L  F  L  G  L  L  K  I  D  S  H  V  L  E  C  P  *  E  :  S  T  Y  I  T  D  N  K  T  D  G  F  *  Y  Q  G  M  K  R  V  L  K  S  W  T  L  R  V  H  Y  N  L  Q  T  Y  N  F  F  F  L  K  N  *  K  L  K  W  Y  K  *  R  P  L  *  F  I  S  E  I  A  L  I  E  K  L  L  C  I  C  L </first_frame>
            <second_frame>  T  E  N  N  R  T  L  G  F  P  K  F  P  S  P  F  S  L  C  F  G  V  V  C  V  N  F  L  P  P  Q  :  I  M  D  D  K  V  V  T  M  D  D  Q  I  V  S  E  L  T  I  P  E  N  V  A  K  E  L  L  L  V  S  N  S  S  S  L  E  T  A  L  D  K  L  I  Q  L  S  K  E  G  G  G  R  L  D  L  S  S  K  N  V  V  T  T  V  L  H  L  C  Q  S  L  S  S  I  S  Y  R  N  L  L  L  L  S  L  K  V  L  R  N  L  C  A  G  E  I  R  N  Q  N  G  F  L  Q  Q  R  G  V  E  I  V  L  D  V  I  M  S  V  G  L  S  P  D  P  D  C  M  I  I  R  V  G  L  Q  L  L  G  N  Y  S  V  G  G  G  E  R  Q  C  D  V  W  Y  Q  L  F  P  H  K  F  L  K  I  A  R  V  R  N  Q  E  I  C  D  P  L  C  M  V  I  Y  T  C  C  D  G  T  D  G  L  L  T  D  L  C  S  E  Q  G  L  P  I  L  F  E  I  L  R  T  A  S  A   : V  G  L  K  E  V  W  L  K  L  L  L  S  K  L  C  I  E  G  S  H  I  S  S  I  F  F  K  L  H  S  Y  P  S  V  E  D  N  G  V  V  T  H  V  A  D  Q  F  V  I  E  Q  P  Y  L  L  S  I  L  S  E  I  L  N  E  R  V  E  H  I  V  V  S  H  D  F  A  R  S  I  F  G  I  L  K  S  A  S  G  V  V  D  F  S  I  R  G  K  S  D  L  P  V  G  S  A  P  I  D  V  L  G  Y  S  L  T  L  M  R  D  I  C  A  S  D  H  L  S  S  S  K  E  E  S  S  K  D  V  V  D  V  L  V  S  S  G  L  I  E  F  L  L  N  L  L  R  D  L  E  P  P  T  T  I  R  N  A  M  K  P  D  Q  I  K  E  G  T  I  P  S  S  F  R  C  C  P  Y  Q  G  F  R  R  D  I  V  A  I  L  G  N  C  A  Y  R  R  R  H  V  Q  D  E  I  R  D  K  N  G  I  L  L  L  L  Q  Q  C  V  I  D  E  D  N  P  F  L  R  E  W  G  I  W  C  V  R  N  L  L  E  G  N  A  E  N  Q  G  A  I  T  D  L  E  L  Q  G  T  V  D  V  P  E  L  V  R  L  G  L  R  V  E  V  D  P  V  T  R  R  T  K  L  V  N  S  S  *  Y  V  K  *  *  K  L  K  I  A  T  S  G  V  D  K  L  I  V  Q  E  T  C  F  L  V  C  L  R  L  I  H  M  F  W  N  V  H  K  R :   V  H  T  L  Q  T  I  K  Q  M  D  F  D  T  K  E  *  R  E  C  *  S  H  G  R  S  E  Y  I  T  I  Y  K  P  I  I  S  S  F  *  K  I  E  N  L  S  G  I  N  K  G  H  C  N  L  F  L  K  *  L  *  *  K  S  C  C  V  F  V   </second_frame>
            <third_frame>   L  K  T  I  E  P  *  V  S  Q  N  F  L  L  L  S  L  F  V  L  V  S  S  A  S  I  F  F  L  L  R :   *  W  M  I  R  L  L  L  W  M  I  K  L  Y  Q  S  L  Q  S  Q  K  M  S  P  K  N  Y  Y  L  C  Q  T  H  L  L  *  K  R  H  S  T  S  *  Y  N  F  P  R  R  G  V  D  G  *  I  C  R  P  R  M  L  S  P  L  S  S  I  S  A  S  L  C  H  L  S  L  T  V  T  S  F  Y  C  L  L  R  Y  S  E  I  C  V  L  G  R  *  E  I  R  M  A  F  F  N  K  E  E  L  K  L  S  W  M  L  L  C  L  *  D  F  L  L  I  L  I  V  *  L  F  E  W  G  C  N  F  *  E  T  T  Q  W  V  E  E  N  V  N  V  M  C  G  T  N  C  F  L  I  S  S  *  R  L  L  E  L  E  T  R  K  Y  V  I  L  Y  V  W  S  F  T  L  A  V  M  V  R  M  D  C  L  P  I  Y  V  Q  S  K  G  C  P  F  C  L  K  F  C  V  L  H  Q  P  :  L  V  L  K  K  F  G  *  S  C  Y  S  Q  N  F  A  L  R  A  P  T  S  H  Q  F  S  S  N  Y  I  H  I  L  P  L  R  T  M  V  L  L  H  M  *  L  I  S  L  L  L  S  S  L  I  S  *  V  Y  F  Q  K  S  *  M  N  E  *  S  I  L  L  F  L  M  I  L  L  E  V  S  L  G  Y  *  R  V  L  L  G  L  L  I  F  Q  *  E  G  K  V  I  F  Q  W  G  L  L  L  L  M  F  *  D  T  L  S  P  S  *  E  I  F  A  L  L  I  T  Y  Q  A  L  R  K  K  V  Q  R  M  L  W  T  Y  L  F  P  L  G  L  L  N  F  F  *  T  C  F  G  I  L  N  L  Q  R  Q  L  G  T  Q  *  S  R  I  R  S  R  R  G  Q  Y  L  L  H  L  G  V  V  H  T  K  V  S  G  E  I  L  L  P  S  L  E  I  V  L  I  G  E  G  M  S  K  M  R  L  G  I  K  M  G  S  F  Y  C  Y  N  S  V  L  *  M  K  I  I  L  S  *  G  S  G  E  S  G  V  C  E  T  Y  W  K  G  M  Q  K  T  K  G  L  L  L  I  W  S  F  K  E  P  *  M  F  Q  N  L  L  D  L  G  F  E  *  K  L  I  P  *  L  D  A  Q  S  L  *  I  P  H  D  M  S  S  D  E  S  *  K  L  Q  L  L  E  L  T  N  *  L  F  R  K  L  V  S  W  S  A  *  D  *  F  T  C  S  G  M  S  I  R   : E  Y  I  H  Y  R  Q  *  N  R  W  I  L  I  P  R  N  E  E  S  V  E  V  M  D  A  Q  S  T  L  Q  F  T  N  L  *  F  L  L  F  E  K  L  K  T  *  V  V  *  I  K  A  T  V  I  Y  F  *  N  S  F  N  R  K  A  V  V  Y  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91622" stop="91714"/>
                    <exon start="91893" stop="92523"/>
                    <exon start="92616" stop="93493"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1599</number_coding_nucleotides>
                  <number_encoded_amino_acids>533</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TENNRTLGFPKFPSPFSLCFGVVCVNFLPPQIMDDKVVTMDDQIVSELTIPENVAKELLLVSNSSSLETALDKLIQLSKEGGGRLDLSSKNVVTTVLHLCQSLSSISYRNLLLLSLKVLRNLCAGEIRNQNGFLQQRGVEIVLDVIMSVGLSPDPDCMIIRVGLQLLGNYSVGGGERQCDVWYQLFPHKFLKIARVRNQEICDPLCMVIYTCCDGTDGLLTDLCSEQGLPILFEILRTASAVGLKEVWLKLLLSKLCIEGSHISSIFFKLHSYPSVEDNGVVTHVADQFVIEQPYLLSILSEILNERVEHIVVSHDFARSIFGILKSASGVVDFSIRGKSDLPVGSAPIDVLGYSLTLMRDICASDHLSSSKEESSKDVVDVLVSSGLIEFLLNLLRDLEPPTTIRNAMKPDQIKEGTIPSSFRCCPYQGFRRDIVAILGNCAYRRRHVQDEIRDKNGILLLLQQCVIDEDNPFLREWGIWCVRNLLEGNAENQGAITDLELQGTVDVPELVRLGLRVEVDPVTRRTKLVNSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="96542" PGL_stop="99715"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96542" e_stop="96799"/>
            <exon e_start="96907" e_stop="98187"/>
            <exon e_start="99163" e_stop="99190"/>
            <exon e_start="99352" e_stop="99715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="0.998"/>
          <exon-intron don_prob="0.988" acc_prob="0.671" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96542" e_stop="96799" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96800" i_stop="96906" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="96907" e_stop="98187" e_length="1281"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="98188" i_stop="99162" i_length="975"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99163" e_stop="99190" e_length="28"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.671">
            <gDNA_intron_boundary i_start="99191" i_stop="99351" i_length="161"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99352" e_stop="99715" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96542" stop="96799"/>
              <exon start="96907" stop="98187"/>
              <exon start="99163" stop="99190"/>
              <exon start="99352" stop="99715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98032" stop="98187"/>
              <exon start="99163" stop="99190"/>
              <exon start="99352" stop="99710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTTCTTATAGCTTACTCCAAATTTAGATCTTGCAAGTCAAAAATTCCTTATGTCAATTGCCCCTTTTAGTAGTAAACAGCAAAAAATTTCTCAAGATAATGCAATCCCTACCTGAACCTGAAACAGAAGATGATACAAGAAAACATCAAGCTTCTCTTTAATGGCAAATACTAAAAAGTTCCCTCCTTTCTTCTTCTTCTTTGTCCTCTTCTCTTGCTGCTTCTTCTCCACTTCAAGTTCAAATTTTGCACCAG : AGATAAAAGTGCAGCAAGACAAAGATGAGCCATATGTGGGAGTGAACATAGGTACAGATGTTTCCAATTTGCTTTCACCTGCAGACTTGGTTGCTTTTTTGCAATTACAGAAGATAACTCATATAAGGCTTTATGATGCTGACCCTGATATACTCAAAGCACTAGCTAAGACCAAAATAAGAGTGATTATTAGTGTGCCTAACAACCAAATTCTTGCTATTGGGTCCTCTAATACTACTGCAGCTGCCTGGATTGGGCGCAATGTGGCAGCTTATTACCCTGAAACTCTTATCACTGCAATAGCAGTTGGGGATGAAATCTTGACCACTGTGCCAAGTTCAGCTCCTTTGCTTATGCCAGCAATTGAGTCACTTTATAGTGCTTTAGTGGCTGCAAATTTGCATAACCAAATCAAGATTTCAACTCCAAATGCTGCTTCCATTATTCTTGACCCTTTTCCACCTTCCCAAGCTTTTTTCAATCAGTCCATGAGCTCTGTCCTTTCTAAGTTATTGCAGTTCTGTTCAAGGACACAGTCACCTCTGATGATGAATTTGTACCCTTATTATGTGTTTATGCAGAATAAAGGGGTTGTTCCTATAGACAACTCTCTTTTCAAGCCCTTGACACCTTCTAAAGAGATGGTGGATCCTAATACTTTGCTTCATTACACCAATGTGCTTGATGCAATGATTGATTCAGTCTATTTTTCCATGAAAAATCTCAATATTACAGATGTGCTAGTTCTTGTTACCGAGTCAGGATGGCCTTCAAAGGGGGATTCTAAAGAGCCTTATGCTACAATTGACAATGCTGATACTTATAACTCGAATTTAATTAAGCATATAATTGATCGCAGTGGTACACCATTGCATCCGGAGATTACTTCTAGTGTATACATATATGAGTTATTCAATGAGGATTTGAGGTCACCCCCATTGTCCGAGGCAAATTGGGGGCTATTCCATGGGAATTCAACGCCTGTTTACCTGCTTCATGTGTCTGGAAGTGGTACATTCTTGGCTAATGACACCACTAACCAAACGTATTGCATAGCAATGGATGGGGTTGATAAGAGAACAATGCAGGCAGCTTTAGATTGGGCTTGTGGACCGGGGAGGGCAAATTGCTCTGAAATTCAGCCAGGAGAGAGTTGTTATCAGCCTAATGATGTGAAGAACCATGCTTCATATGCATTTGATAGCTATTATCAGAAAGAAGGGGGATCTCCTAGTTCTTGTGACTTCAAGGGAGTGGCCATGATCACCACAACTGATCCAA : GTCACGGGAGTTGTATATTTCCAGGAAG : CAAGAAAGTAAGCAATAAAACAAGCGAGGTAGTGAACGCGACACAACCAAGTGGAGCAAATACAATAAGGTTTCTTGGAGCACAGACAAGTATATTTGACAAGAATGTGCATGTTTTATTTGGTGTTGCCTTGTGCTTGTTTTATTATTCATTGATTCAGGTACAATTAAGTTAATTAGTTTTTTAGTTGAAATCTTTTTATTTGTTCAATAAAGAAAGTAGTACTAGTTCATTGTGGAGAGGGCAGTGATGTTTTGCAGAGGAGTGCTTATGAATATTTTTTTGGGAGGATCACATGTAAGGGGATTCTTTGATGGACCTTTTTGTAAAAAGAAAGTTGTATCTAATGAGATTCTTGGAAGTT</gDNA_template>
            <first_frame> S  F  S  Y  S  L  L  Q  I  *  I  L  Q  V  K  N  S  L  C  Q  L  P  L  L  V  V  N  S  K  K  F  L  K  I  M  Q  S  L  P  E  P  E  T  E  D  D  T  R  K  H  Q  A  S  L  *  W  Q  I  L  K  S  S  L  L  S  S  S  S  L  S  S  S  L  A  A  S  S  P  L  Q  V  Q  I  L  H  Q  :  R  *  K  C  S  K  T  K  M  S  H  M  W  E  *  T  *  V  Q  M  F  P  I  C  F  H  L  Q  T  W  L  L  F  C  N  Y  R  R  *  L  I  *  G  F  M  M  L  T  L  I  Y  S  K  H  *  L  R  P  K  *  E  *  L  L  V  C  L  T  T  K  F  L  L  L  G  P  L  I  L  L  Q  L  P  G  L  G  A  M  W  Q  L  I  T  L  K  L  L  S  L  Q  *  Q  L  G  M  K  S  *  P  L  C  Q  V  Q  L  L  C  L  C  Q  Q  L  S  H  F  I  V  L  *  W  L  Q  I  C  I  T  K  S  R  F  Q  L  Q  M  L  L  P  L  F  L  T  L  F  H  L  P  K  L  F  S  I  S  P  *  A  L  S  F  L  S  Y  C  S  S  V  Q  G  H  S  H  L  *  *  *  I  C  T  L  I  M  C  L  C  R  I  K  G  L  F  L  *  T  T  L  F  S  S  P  *  H  L  L  K  R  W  W  I  L  I  L  C  F  I  T  P  M  C  L  M  Q  *  L  I  Q  S  I  F  P  *  K  I  S  I  L  Q  M  C  *  F  L  L  P  S  Q  D  G  L  Q  R  G  I  L  K  S  L  M  L  Q  L  T  M  L  I  L  I  T  R  I  *  L  S  I  *  L  I  A  V  V  H  H  C  I  R  R  L  L  L  V  Y  T  Y  M  S  Y  S  M  R  I  *  G  H  P  H  C  P  R  Q  I  G  G  Y  S  M  G  I  Q  R  L  F  T  C  F  M  C  L  E  V  V  H  S  W  L  M  T  P  L  T  K  R  I  A  *  Q  W  M  G  L  I  R  E  Q  C  R  Q  L  *  I  G  L  V  D  R  G  G  Q  I  A  L  K  F  S  Q  E  R  V  V  I  S  L  M  M  *  R  T  M  L  H  M  H  L  I  A  I  I  R  K  K  G  D  L  L  V  L  V  T  S  R  E  W  P  *  S  P  Q  L  I  Q  :  V  T  G  V  V  Y  F  Q  E   : A  R  K  *  A  I  K  Q  A  R  *  *  T  R  H  N  Q  V  E  Q  I  Q  *  G  F  L  E  H  R  Q  V  Y  L  T  R  M  C  M  F  Y  L  V  L  P  C  A  C  F  I  I  H  *  F  R  Y  N  *  V  N  *  F  F  S  *  N  L  F  I  C  S  I  K  K  V  V  L  V  H  C  G  E  G  S  D  V  L  Q  R  S  A  Y  E  Y  F  F  G  R  I  T  C  K  G  I  L  *  W  T  F  L  *  K  E  S  C  I  *  *  D  S  W  K   </first_frame>
            <second_frame>  L  F  L  I  A  Y  S  K  F  R  S  C  K  S  K  I  P  Y  V  N  C  P  F  *  *  *  T  A  K  N  F  S  R  *  C  N  P  Y  L  N  L  K  Q  K  M  I  Q  E  N  I  K  L  L  F  N  G  K  Y  *  K  V  P  S  F  L  L  L  L  C  P  L  L  L  L  L  L  L  H  F  K  F  K  F  C  T  R :   D  K  S  A  A  R  Q  R  *  A  I  C  G  S  E  H  R  Y  R  C  F  Q  F  A  F  T  C  R  L  G  C  F  F  A  I  T  E  D  N  S  Y  K  A  L  *  C  *  P  *  Y  T  Q  S  T  S  *  D  Q  N  K  S  D  Y  *  C  A  *  Q  P  N  S  C  Y  W  V  L  *  Y  Y  C  S  C  L  D  W  A  Q  C  G  S  L  L  P  *  N  S  Y  H  C  N  S  S  W  G  *  N  L  D  H  C  A  K  F  S  S  F  A  Y  A  S  N  *  V  T  L  *  C  F  S  G  C  K  F  A  *  P  N  Q  D  F  N  S  K  C  C  F  H  Y  S  *  P  F  S  T  F  P  S  F  F  Q  S  V  H  E  L  C  P  F  *  V  I  A  V  L  F  K  D  T  V  T  S  D  D  E  F  V  P  L  L  C  V  Y  A  E  *  R  G  C  S  Y  R  Q  L  S  F  Q  A  L  D  T  F  *  R  D  G  G  S  *  Y  F  A  S  L  H  Q  C  A  *  C  N  D  *  F  S  L  F  F  H  E  K  S  Q  Y  Y  R  C  A  S  S  C  Y  R  V  R  M  A  F  K  G  G  F  *  R  A  L  C  Y  N  *  Q  C  *  Y  L  *  L  E  F  N  *  A  Y  N  *  S  Q  W  Y  T  I  A  S  G  D  Y  F  *  C  I  H  I  *  V  I  Q  *  G  F  E  V  T  P  I  V  R  G  K  L  G  A  I  P  W  E  F  N  A  C  L  P  A  S  C  V  W  K  W  Y  I  L  G  *  *  H  H  *  P  N  V  L  H  S  N  G  W  G  *  *  E  N  N  A  G  S  F  R  L  G  L  W  T  G  E  G  K  L  L  *  N  S  A  R  R  E  L  L  S  A  *  *  C  E  E  P  C  F  I  C  I  *  *  L  L  S  E  R  R  G  I  S  *  F  L  *  L  Q  G  S  G  H  D  H  H  N  *  S  K :   S  R  E  L  Y  I  S  R  K  :  Q  E  S  K  Q  *  N  K  R  G  S  E  R  D  T  T  K  W  S  K  Y  N  K  V  S  W  S  T  D  K  Y  I  *  Q  E  C  A  C  F  I  W  C  C  L  V  L  V  L  L  F  I  D  S  G  T  I  K  L  I  S  F  L  V  E  I  F  L  F  V  Q  *  R  K  *  Y  *  F  I  V  E  R  A  V  M  F  C  R  G  V  L  M  N  I  F  L  G  G  S  H  V  R  G  F  F  D  G  P  F  C  K  K  K  V  V  S  N  E  I  L  G  S  </second_frame>
            <third_frame>   F  F  L  *  L  T  P  N  L  D  L  A  S  Q  K  F  L  M  S  I  A  P  F  S  S  K  Q  Q  K  I  S  Q  D  N  A  I  P  T  *  T  *  N  R  R  *  Y  K  K  T  S  S  F  S  L  M  A  N  T  K  K  F  P  P  F  F  F  F  F  V  L  F  S  C  C  F  F  S  T  S  S  S  N  F  A  P   : E  I  K  V  Q  Q  D  K  D  E  P  Y  V  G  V  N  I  G  T  D  V  S  N  L  L  S  P  A  D  L  V  A  F  L  Q  L  Q  K  I  T  H  I  R  L  Y  D  A  D  P  D  I  L  K  A  L  A  K  T  K  I  R  V  I  I  S  V  P  N  N  Q  I  L  A  I  G  S  S  N  T  T  A  A  A  W  I  G  R  N  V  A  A  Y  Y  P  E  T  L  I  T  A  I  A  V  G  D  E  I  L  T  T  V  P  S  S  A  P  L  L  M  P  A  I  E  S  L  Y  S  A  L  V  A  A  N  L  H  N  Q  I  K  I  S  T  P  N  A  A  S  I  I  L  D  P  F  P  P  S  Q  A  F  F  N  Q  S  M  S  S  V  L  S  K  L  L  Q  F  C  S  R  T  Q  S  P  L  M  M  N  L  Y  P  Y  Y  V  F  M  Q  N  K  G  V  V  P  I  D  N  S  L  F  K  P  L  T  P  S  K  E  M  V  D  P  N  T  L  L  H  Y  T  N  V  L  D  A  M  I  D  S  V  Y  F  S  M  K  N  L  N  I  T  D  V  L  V  L  V  T  E  S  G  W  P  S  K  G  D  S  K  E  P  Y  A  T  I  D  N  A  D  T  Y  N  S  N  L  I  K  H  I  I  D  R  S  G  T  P  L  H  P  E  I  T  S  S  V  Y  I  Y  E  L  F  N  E  D  L  R  S  P  P  L  S  E  A  N  W  G  L  F  H  G  N  S  T  P  V  Y  L  L  H  V  S  G  S  G  T  F  L  A  N  D  T  T  N  Q  T  Y  C  I  A  M  D  G  V  D  K  R  T  M  Q  A  A  L  D  W  A  C  G  P  G  R  A  N  C  S  E  I  Q  P  G  E  S  C  Y  Q  P  N  D  V  K  N  H  A  S  Y  A  F  D  S  Y  Y  Q  K  E  G  G  S  P  S  S  C  D  F  K  G  V  A  M  I  T  T  T  D  P   : S  H  G  S  C  I  F  P  G  S :   K  K  V  S  N  K  T  S  E  V  V  N  A  T  Q  P  S  G  A  N  T  I  R  F  L  G  A  Q  T  S  I  F  D  K  N  V  H  V  L  F  G  V  A  L  C  L  F  Y  Y  S  L  I  Q  V  Q  L  S  *  L  V  F  *  L  K  S  F  Y  L  F  N  K  E  S  S  T  S  S  L  W  R  G  Q  *  C  F  A  E  E  C  L  *  I  F  F  W  E  D  H  M  *  G  D  S  L  M  D  L  F  V  K  R  K  L  Y  L  M  R  F  L  E  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96679" stop="96799"/>
                    <exon start="96907" stop="98187"/>
                    <exon start="99163" stop="99190"/>
                    <exon start="99352" stop="99526"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1602</number_coding_nucleotides>
                  <number_encoded_amino_acids>534</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKKTSSFSLMANTKKFPPFFFFFVLFSCCFFSTSSSNFAPEIKVQQDKDEPYVGVNIGTDVSNLLSPADLVAFLQLQKITHIRLYDADPDILKALAKTKIRVIISVPNNQILAIGSSNTTAAAWIGRNVAAYYPETLITAIAVGDEILTTVPSSAPLLMPAIESLYSALVAANLHNQIKISTPNAASIILDPFPPSQAFFNQSMSSVLSKLLQFCSRTQSPLMMNLYPYYVFMQNKGVVPIDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDSVYFSMKNLNITDVLVLVTESGWPSKGDSKEPYATIDNADTYNSNLIKHIIDRSGTPLHPEITSSVYIYELFNEDLRSPPLSEANWGLFHGNSTPVYLLHVSGSGTFLANDTTNQTYCIAMDGVDKRTMQAALDWACGPGRANCSEIQPGESCYQPNDVKNHASYAFDSYYQKEGGSPSSCDFKGVAMITTTDPSHGSCIFPGSKKVSNKTSEVVNATQPSGANTIRFLGAQTSIFDKNVHVLFGVALCLFYYSLIQVQLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="105114" PGL_stop="107972"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105114" e_stop="105352"/>
            <exon e_start="105424" e_stop="105533"/>
            <exon e_start="106867" e_stop="107137"/>
            <exon e_start="107232" e_stop="107334"/>
            <exon e_start="107421" e_stop="107766"/>
            <exon e_start="107893" e_stop="107972"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.858" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.922" e_score="0.988"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105114" e_stop="105352" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.858" acc_prob="0.983">
            <gDNA_intron_boundary i_start="105353" i_stop="105423" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105424" e_stop="105533" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.997">
            <gDNA_intron_boundary i_start="105534" i_stop="106866" i_length="1333"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106867" e_stop="107137" e_length="271"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="107138" i_stop="107231" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107232" e_stop="107334" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="107335" i_stop="107420" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="107421" e_stop="107766" e_length="346"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.922">
            <gDNA_intron_boundary i_start="107767" i_stop="107892" i_length="126"/>
          </intron>
          <exon e_serial="6" e_score="0.975">
            <gDNA_exon_boundary e_start="107893" e_stop="107972" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105114" stop="105352"/>
              <exon start="105424" stop="105533"/>
              <exon start="106867" stop="107137"/>
              <exon start="107232" stop="107334"/>
              <exon start="107421" stop="107766"/>
              <exon start="107893" stop="107972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTCCATTTTGGAGAAGAAGGGGAAACCTGAAAAAGTTCATTTTCTTTTCAACAAAGTAGAAAGAGAAACAACACAGAATGAGGGAGAAGAGCCTTAATGTTCATTGTTCTTTCATTTTCACTATTATTCTTGTGTTAGTTACTACTTTACAATGTATATATGCTGACAATCCTTATCGATACTACACTTGGAAAATCACTTACGGAGATATTTACCCTTTGGGTGTCAAACAACAG : GGGATCTTGATAAATGGGCAGTTTCCAGGGCCACAGATTGATTGTGTAACAAATGACAATTTGATTATCAGTGTCTACAACTACTTGAGTGAACCTTTTCTCATTTCTTG : GAATGGTATACAACAAAGGAGGAACTCATGGCAAGATGGAGTTTATGGCACAACTTGTCCAATCCTACCTGGAAAGAACTTCACTTATACCCTCCAAGCAAAAGACCAGATAGGTAGTTATTTCTACTTCCCATCACTTGCAATGCACAAGGCAGCAGGAGGATATGGTGCCATCAGAGTCTATAGCCGTCCTCGAATTCCAGTACCTTTTGCTCCACCTGCTCATGATTTCACTGTACTAGCTGGAGACTTGTACAAGAGAAGTCACAGG : CAACTGAAGTACATTTTAGATAGTGGTCATGATCTTCCGTTACCTGATGGTCTTATTATCAATGGTCGAGGATGGAACGGATACACATTTACAGTTGATCAAG : GTAAGACATATAGGTTCAGGATATCTAATGTGGGGATTGCGACATCAATTAATTTCAGAATTCAAGGGCACACGATGAAACTGGTTGAAGTTGAGGGATCACATACACTTCAGACAACCTACACTTCACTTGACATCCATCTAGGACAATCTTATTCAGTTTTAGTCACTGCCAATCAGCCTCCAAAGGACTACTACATCGTGGTCTCTTCACGATTCACCACACGAGTGCTAACCACTACTGCCGTTCTTCACTACAGCAACTCATGGACAAAAGTCTCTGGACCTCCCCCTGGAGGGCCTACTACTCAAATTAATTGGTCCCTTTACCAGGCCAGATCTATTCG : TTGGAATCTCACTGCAAGTGGACCAAGGCCTAATCCTCAAGGTTCTTATCATTATGGATTGATCAAGCCTTCGCGCACAA</gDNA_template>
            <first_frame> I  F  H  F  G  E  E  G  E  T  *  K  S  S  F  S  F  Q  Q  S  R  K  R  N  N  T  E  *  G  R  R  A  L  M  F  I  V  L  S  F  S  L  L  F  L  C  *  L  L  L  Y  N  V  Y  M  L  T  I  L  I  D  T  T  L  G  K  S  L  T  E  I  F  T  L  W  V  S  N  N  R :   G  S  *  *  M  G  S  F  Q  G  H  R  L  I  V  *  Q  M  T  I  *  L  S  V  S  T  T  T  *  V  N  L  F  S  F  L   : G  M  V  Y  N  K  G  G  T  H  G  K  M  E  F  M  A  Q  L  V  Q  S  Y  L  E  R  T  S  L  I  P  S  K  Q  K  T  R  *  V  V  I  S  T  S  H  H  L  Q  C  T  R  Q  Q  E  D  M  V  P  S  E  S  I  A  V  L  E  F  Q  Y  L  L  L  H  L  L  M  I  S  L  Y  *  L  E  T  C  T  R  E  V  T  G :   N  *  S  T  F  *  I  V  V  M  I  F  R  Y  L  M  V  L  L  S  M  V  E  D  G  T  D  T  H  L  Q  L  I  K  :  V  R  H  I  G  S  G  Y  L  M  W  G  L  R  H  Q  L  I  S  E  F  K  G  T  R  *  N  W  L  K  L  R  D  H  I  H  F  R  Q  P  T  L  H  L  T  S  I  *  D  N  L  I  Q  F  *  S  L  P  I  S  L  Q  R  T  T  T  S  W  S  L  H  D  S  P  H  E  C  *  P  L  L  P  F  F  T  T  A  T  H  G  Q  K  S  L  D  L  P  L  E  G  L  L  L  K  L  I  G  P  F  T  R  P  D  L  F   : V  G  I  S  L  Q  V  D  Q  G  L  I  L  K  V  L  I  I  M  D  *  S  S  L  R  A  Q </first_frame>
            <second_frame>  F  S  I  L  E  K  K  G  K  P  E  K  V  H  F  L  F  N  K  V  E  R  E  T  T  Q  N  E  G  E  E  P  *  C  S  L  F  F  H  F  H  Y  Y  S  C  V  S  Y  Y  F  T  M  Y  I  C  *  Q  S  L  S  I  L  H  L  E  N  H  L  R  R  Y  L  P  F  G  C  Q  T  T   : G  D  L  D  K  W  A  V  S  R  A  T  D  *  L  C  N  K  *  Q  F  D  Y  Q  C  L  Q  L  L  E  *  T  F  S  H  F  L  :  E  W  Y  T  T  K  E  E  L  M  A  R  W  S  L  W  H  N  L  S  N  P  T  W  K  E  L  H  L  Y  P  P  S  K  R  P  D  R  *  L  F  L  L  P  I  T  C  N  A  Q  G  S  R  R  I  W  C  H  Q  S  L  *  P  S  S  N  S  S  T  F  C  S  T  C  S  *  F  H  C  T  S  W  R  L  V  Q  E  K  S  Q   : A  T  E  V  H  F  R  *  W  S  *  S  S  V  T  *  W  S  Y  Y  Q  W  S  R  M  E  R  I  H  I  Y  S  *  S  R :   *  D  I  *  V  Q  D  I  *  C  G  D  C  D  I  N  *  F  Q  N  S  R  A  H  D  E  T  G  *  S  *  G  I  T  Y  T  S  D  N  L  H  F  T  *  H  P  S  R  T  I  L  F  S  F  S  H  C  Q  S  A  S  K  G  L  L  H  R  G  L  F  T  I  H  H  T  S  A  N  H  Y  C  R  S  S  L  Q  Q  L  M  D  K  S  L  W  T  S  P  W  R  A  Y  Y  S  N  *  L  V  P  L  P  G  Q  I  Y  S  :  L  E  S  H  C  K  W  T  K  A  *  S  S  R  F  L  S  L  W  I  D  Q  A  F  A  H   </second_frame>
            <third_frame>   F  P  F  W  R  R  R  G  N  L  K  K  F  I  F  F  S  T  K  *  K  E  K  Q  H  R  M  R  E  K  S  L  N  V  H  C  S  F  I  F  T  I  I  L  V  L  V  T  T  L  Q  C  I  Y  A  D  N  P  Y  R  Y  Y  T  W  K  I  T  Y  G  D  I  Y  P  L  G  V  K  Q  Q  :  G  I  L  I  N  G  Q  F  P  G  P  Q  I  D  C  V  T  N  D  N  L  I  I  S  V  Y  N  Y  L  S  E  P  F  L  I  S  W :   N  G  I  Q  Q  R  R  N  S  W  Q  D  G  V  Y  G  T  T  C  P  I  L  P  G  K  N  F  T  Y  T  L  Q  A  K  D  Q  I  G  S  Y  F  Y  F  P  S  L  A  M  H  K  A  A  G  G  Y  G  A  I  R  V  Y  S  R  P  R  I  P  V  P  F  A  P  P  A  H  D  F  T  V  L  A  G  D  L  Y  K  R  S  H  R  :  Q  L  K  Y  I  L  D  S  G  H  D  L  P  L  P  D  G  L  I  I  N  G  R  G  W  N  G  Y  T  F  T  V  D  Q   : G  K  T  Y  R  F  R  I  S  N  V  G  I  A  T  S  I  N  F  R  I  Q  G  H  T  M  K  L  V  E  V  E  G  S  H  T  L  Q  T  T  Y  T  S  L  D  I  H  L  G  Q  S  Y  S  V  L  V  T  A  N  Q  P  P  K  D  Y  Y  I  V  V  S  S  R  F  T  T  R  V  L  T  T  T  A  V  L  H  Y  S  N  S  W  T  K  V  S  G  P  P  P  G  G  P  T  T  Q  I  N  W  S  L  Y  Q  A  R  S  I  R :   W  N  L  T  A  S  G  P  R  P  N  P  Q  G  S  Y  H  Y  G  L  I  K  P  S  R  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105176" stop="105352"/>
                    <exon start="105424" stop="105533"/>
                    <exon start="106867" stop="107137"/>
                    <exon start="107232" stop="107334"/>
                    <exon start="107421" stop="107766"/>
                    <exon start="107893" stop="107971"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1086</number_coding_nucleotides>
                  <number_encoded_amino_acids>362</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEKQHRMREKSLNVHCSFIFTIILVLVTTLQCIYADNPYRYYTWKITYGDIYPLGVKQQGILINGQFPGPQIDCVTNDNLIISVYNYLSEPFLISWNGIQQRRNSWQDGVYGTTCPILPGKNFTYTLQAKDQIGSYFYFPSLAMHKAAGGYGAIRVYSRPRIPVPFAPPAHDFTVLAGDLYKRSHRQLKYILDSGHDLPLPDGLIINGRGWNGYTFTVDQGKTYRFRISNVGIATSINFRIQGHTMKLVEVEGSHTLQTTYTSLDIHLGQSYSVLVTANQPPKDYYIVVSSRFTTRVLTTTAVLHYSNSWTKVSGPPPGGPTTQINWSLYQARSIRWNLTASGPRPNPQGSYHYGLIKPSRT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="108427" PGL_stop="109072"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108427" e_stop="108460"/>
            <exon e_start="108555" e_stop="109072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108427" e_stop="108460" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="108461" i_stop="108554" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108555" e_stop="109072" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108427" stop="108460"/>
              <exon start="108555" stop="109072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568738" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAAGGGACACAATTGCACGTTGCACCGTCCAG : GTGTATCCTAAGTCATGGACCGCAATATACATGGCATTGGACAATGTAGGAATGTGGAACATAAGGTCTGAGAATTGGTCAAGGAGGTACTTGGGTCAACAATTCTACTTAAGAGTTTACTCCCCAGCCAATTCTTGGAGAGATGAACTCCCAATACCAAAGAATGCTATTCTTTGTGGCAAAGCTAGAGGTCATCGTACTAGGCCTCTTTGAAACAATGTAGTAGTTTTCTGTCACGAGAGGGTGACCGGCGTATATCAATGTGAGCTAAGGGAAAGATTTAATCTGGAAAGAGTTAAAGAAGCTGAGTTTGCGCTATGACTTATAGCTAGTCTCTTCTTTTCCTTCTATATCATATTTGTATCATGTGTTTAATTGTTCAACTGTATCATTTCACATCTCATTATTTTTTCCCCAAACTTTTGGTTAAACCTACATAGATTAGCTGAGAATAACTTTCTGTACTTCAAGGTCATTCGAGTTGTTGTTTATCTTGTATTCCTAAAATATTTGGAACA</gDNA_template>
            <first_frame> L  K  G  H  N  C  T  L  H  R  P   : G  V  S  *  V  M  D  R  N  I  H  G  I  G  Q  C  R  N  V  E  H  K  V  *  E  L  V  K  E  V  L  G  S  T  I  L  L  K  S  L  L  P  S  Q  F  L  E  R  *  T  P  N  T  K  E  C  Y  S  L  W  Q  S  *  R  S  S  Y  *  A  S  L  K  Q  C  S  S  F  L  S  R  E  G  D  R  R  I  S  M  *  A  K  G  K  I  *  S  G  K  S  *  R  S  *  V  C  A  M  T  Y  S  *  S  L  L  F  L  L  Y  H  I  C  I  M  C  L  I  V  Q  L  Y  H  F  T  S  H  Y  F  F  P  K  L  L  V  K  P  T  *  I  S  *  E  *  L  S  V  L  Q  G  H  S  S  C  C  L  S  C  I  P  K  I  F  G  T </first_frame>
            <second_frame>  L  R  D  T  I  A  R  C  T  V  Q  :  V  Y  P  K  S  W  T  A  I  Y  M  A  L  D  N  V  G  M  W  N  I  R  S  E  N  W  S  R  R  Y  L  G  Q  Q  F  Y  L  R  V  Y  S  P  A  N  S  W  R  D  E  L  P  I  P  K  N  A  I  L  C  G  K  A  R  G  H  R  T  R  P  L  *  N  N  V  V  V  F  C  H  E  R  V  T  G  V  Y  Q  C  E  L  R  E  R  F  N  L  E  R  V  K  E  A  E  F  A  L  *  L  I  A  S  L  F  F  S  F  Y  I  I  F  V  S  C  V  *  L  F  N  C  I  I  S  H  L  I  I  F  S  P  N  F  W  L  N  L  H  R  L  A  E  N  N  F  L  Y  F  K  V  I  R  V  V  V  Y  L  V  F  L  K  Y  L  E   </second_frame>
            <third_frame>   *  G  T  Q  L  H  V  A  P  S  R :   C  I  L  S  H  G  P  Q  Y  T  W  H  W  T  M  *  E  C  G  T  *  G  L  R  I  G  Q  G  G  T  W  V  N  N  S  T  *  E  F  T  P  Q  P  I  L  G  E  M  N  S  Q  Y  Q  R  M  L  F  F  V  A  K  L  E  V  I  V  L  G  L  F  E  T  M  *  *  F  S  V  T  R  G  *  P  A  Y  I  N  V  S  *  G  K  D  L  I  W  K  E  L  K  K  L  S  L  R  Y  D  L  *  L  V  S  S  F  P  S  I  S  Y  L  Y  H  V  F  N  C  S  T  V  S  F  H  I  S  L  F  F  P  Q  T  F  G  *  T  Y  I  D  *  L  R  I  T  F  C  T  S  R  S  F  E  L  L  F  I  L  Y  S  *  N  I  W  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0167J21.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108428" stop="108460"/>
                    <exon start="108555" stop="108767"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRDTIARCTVQVYPKSWTAIYMALDNVGMWNIRSENWSRRYLGQQFYLRVYSPANSWRDELPIPKNAILCGKARGHRTRPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 48 chains have been computed
$ 
$ memory statistics:
$ 48960 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 2225 bytes was the average size of a spliced alignment
$ 27616 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1534 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 50 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:42:16
-->
