<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:34:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566891" ref_strand="+" ref_description="SGN-U566891 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147837154|emb|CAN63634.1| (e_value=2e-67) hypothetical; (*ATH) AT5G19290.1 (e_value=9e-43) | Symbol: None | esterase/lipase/thioesterase family protein, low similarity to monoglyceride lipase (Homo sapiens) GI:14594904; contains Interpro entry IPR000379 | chr5:6494057-6495286 FORWARD | Aliases: F7K24.40, F7K24_40; ">
      <seq>atttattaccccagcatgaaacagttgggaggctaaactcccaacccctatcagtactcttgaacaacatagatatatcataatgcacatttgtgtgtatatatcaacaaacacaaacacaaacacaaaacacaaacagacaaactcagtcattacaatgtctcacccaattttccaatctaatgagaacagcccttatggtaacttgacaagagaagagttttacaagcaacataaaatcatgcacaaacaaagtttcatgttaaacaaacaaaacatgaagatattcacacaatcttggcagcctgaatcaagtaatcagttaagaggtcttgtaggcatgattcatggttatacgtccgaaagcagttggctttttgagctaaatgcagtagctatggtgaaagctggatttttcgtttgttctcttgacctacaaggtcacggttactcagaaggctcacctggttacataccgtgtattcaacctttagtccaagactgtatacagtactttgactctgctcgtgctgatcacccgaatctccctgctttcctgtatggtgagtcattangtggtgcaatttctacactcatatgtctaannnaaaagaatgtatggaatggnctgatgttaagtggnncgatgtttggnntgncaaanaatacagacctgtttggccactgganaanctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="6218" stop="7516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6518" g_stop="7216" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-U566891" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6518" e_stop="7216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTACCCCAGCATGAAACAGTTGGGAGGCTAAACTCCCAA-CCCTATCAGTACTCTTGAACAACATAGATATATCATAATGCACATTTGTGTGTATATATCAACAAACACAAACACAAACACAAAACACAAACAGACAAACTCAGTCATTACAATGTCTCACCCAATTTTCCAATCTAATGAGAACAGCCCTTATGGTAACTTGACAAGAGAAGAGTTTTACAAGCAACATAAAATCATGCACAAACAAAGTTTCATGTTAAACAAACAAAACATGAAGATATTCACACAATCTTGGCAGCCTGAATCAAGTAATCAGTTAAGAGGTCTTGTAGGCATGATTCATGGTTATACGTCCGAAAGCAGTTGGCTTTTTGAGCTAAATGCAGTAGCTATGGTGAAAGCTGGATTTTTCGTTTGTTCTCTTGACCTACAAGGTCACGGTTACTCAGAAGGCTCACCTGGTTACATACCGTGTATTCAACCTTTAGTCCAAGACTGTATACAGTACTTTGACTCTGCTCGTGCTGATCACCCGAATCTCCCTGCTTTCCTGTATGGTGAGTCATTAGGTGGTGCAATTTCTACACTCATATGTCTAAGGCAAAAGAATGTATGGAATGGTCTGATGTTAAGTGGACCGATGTTTGGAGTGTCAAAGAAATACAGACCTGTTTGGCCACTGGAGAAGCTACTA</genome_strand>
        <mrna_strand>ATTTATTACCCCAGCATGAAACAGTTGGGAGGCTAAACTCCCAACCCCTATCAGTACTCTTGAACAACATAGATATATCATAATGCACATTTGTGTGTATATATCAACAAACACAAACACAAACACAAAACACAAACAGACAAACTCAGTCATTACAATGTCTCACCCAATTTTCCAATCTAATGAGAACAGCCCTTATGGTAACTTGACAAGAGAAGAGTTTTACAAGCAACATAAAATCATGCACAAACAAAGTTTCATGTTAAACAAACAAAACATGAAGATATTCACACAATCTTGGCAGCCTGAATCAAGTAATCAGTTAAGAGGTCTTGTAGGCATGATTCATGGTTATACGTCCGAAAGCAGTTGGCTTTTTGAGCTAAATGCAGTAGCTATGGTGAAAGCTGGATTTTTCGTTTGTTCTCTTGACCTACAAGGTCACGGTTACTCAGAAGGCTCACCTGGTTACATACCGTGTATTCAACCTTTAGTCCAAGACTGTATACAGTACTTTGACTCTGCTCGTGCTGATCACCCGAATCTCCCTGCTTTCCTGTATGGTGAGTCATTANGTGGTGCAATTTCTACACTCATATGTCTAANNNAAAAGAATGTATGGAATGGNCTGATGTTAAGTGGNNCGATGTTTGGNNTGNCAAA-NAATACAGACCTGTTTGGCCACTGGANAANCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566890" ref_strand="+" ref_description="SGN-U566890 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147837154|emb|CAN63634.1| (e_value=4e-110) hypothetical; (*ATH) AT5G14980.1 (e_value=2e-68)  Symbol: None | esterase/lipase/thioesterase family protein, low similarity to monoglyceride lipase from (Homo sapiens) GI:14594904, (Mus musculus) GI:2632162; contains Interpro entry IPR000379 | chr5:4849603-4850586 FORWARD | Aliases: F2G14.100, F2G... ; (*SWP) sp|O35678|MGLL_MOUSE (e_value=2e-11) Monoglyceride lipase OS=Mus musculus GN=Mgll; ">
      <seq>caatgtctcacccaattttccaatctaatgagaacagcccttatggtaacttgacaagagaagagttttacaagcaacataaaatcatgcacaaacaaagtttcatgttaaacaaacaaaacatgaagatattcacacaatcttggcagcctgaatcaagtaatcagttaagaggtcttgtaggcatgattcatggttatacgtccgaaagcagttggctttttgagctaaatgcagtagctatggtgaaagctggatttttcgtttgttctcttgacctacaaggtcacggttactcagaaggctcacctggttacataccgtgtattcaacctttagtccaagactgtatacagtactttgactctgctcgtgctgatcacccgaatctccctgctttcctgtatggtgagtcattaggtggtgcaatttctacactcatatgtctaaggcaaaagaatgtatggaatggtctgatgttaagtggaccgatgtttggagtgtcaaagaaatacagacctgtttggccactggagaagctactaccgttggccgccttcatagctccatcatggaggattgtgatcaccaaaccacctgcatctatatcatacaaagaggagtggaagagaaagattatctcaaaaagtccaaatcgcctggcttccgagaagccaccagctgccactgcactagagcttctgaaagtctgtgagtatatacagaggaactctcatgaactacaagtccctttgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="6372" stop="7731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6672" g_stop="7431" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="760" r_length="760" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-U566890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6672" e_stop="7431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGTCTCACCCAATTTTCCAATCTAATGAGAACAGCCCTTATGGTAACTTGACAAGAGAAGAGTTTTACAAGCAACATAAAATCATGCACAAACAAAGTTTCATGTTAAACAAACAAAACATGAAGATATTCACACAATCTTGGCAGCCTGAATCAAGTAATCAGTTAAGAGGTCTTGTAGGCATGATTCATGGTTATACGTCCGAAAGCAGTTGGCTTTTTGAGCTAAATGCAGTAGCTATGGTGAAAGCTGGATTTTTCGTTTGTTCTCTTGACCTACAAGGTCACGGTTACTCAGAAGGCTCACCTGGTTACATACCGTGTATTCAACCTTTAGTCCAAGACTGTATACAGTACTTTGACTCTGCTCGTGCTGATCACCCGAATCTCCCTGCTTTCCTGTATGGTGAGTCATTAGGTGGTGCAATTTCTACACTCATATGTCTAAGGCAAAAGAATGTATGGAATGGTCTGATGTTAAGTGGACCGATGTTTGGAGTGTCAAAGAAATACAGACCTGTTTGGCCACTGGAGAAGCTACTACCGTTGGCCGCCTTCATAGCTCCATCATGGAGGATTGTGATCACCAAACCACCTGCATCTATATCATACAAAGAGGAGTGGAAGAGAAAGATTATCTCAAAAAGTCCAAATCGCCTGGCTTCCGAGAAGCCACCAGCTGCCACTGCACTAGAGCTTCTGAAAGTCTGTGAGTATATACAGAGGAACTCTCATGAACTACAAGTCCCTTTGCTGAT</genome_strand>
        <mrna_strand>CAATGTCTCACCCAATTTTCCAATCTAATGAGAACAGCCCTTATGGTAACTTGACAAGAGAAGAGTTTTACAAGCAACATAAAATCATGCACAAACAAAGTTTCATGTTAAACAAACAAAACATGAAGATATTCACACAATCTTGGCAGCCTGAATCAAGTAATCAGTTAAGAGGTCTTGTAGGCATGATTCATGGTTATACGTCCGAAAGCAGTTGGCTTTTTGAGCTAAATGCAGTAGCTATGGTGAAAGCTGGATTTTTCGTTTGTTCTCTTGACCTACAAGGTCACGGTTACTCAGAAGGCTCACCTGGTTACATACCGTGTATTCAACCTTTAGTCCAAGACTGTATACAGTACTTTGACTCTGCTCGTGCTGATCACCCGAATCTCCCTGCTTTCCTGTATGGTGAGTCATTAGGTGGTGCAATTTCTACACTCATATGTCTAAGGCAAAAGAATGTATGGAATGGTCTGATGTTAAGTGGACCGATGTTTGGAGTGTCAAAGAAATACAGACCTGTTTGGCCACTGGAGAAGCTACTACCGTTGGCCGCCTTCATAGCTCCATCATGGAGGATTGTGATCACCAAACCACCTGCATCTATATCATACAAAGAGGAGTGGAAGAGAAAGATTATCTCAAAAAGTCCAAATCGCCTGGCTTCCGAGAAGCCACCAGCTGCCACTGCACTAGAGCTTCTGAAAGTCTGTGAGTATATACAGAGGAACTCTCATGAACTACAAGTCCCTTTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599288" ref_strand="+" ref_description="SGN-U599288 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcttatgtcttttaggcagttagcgccgagcagactatgactccaccataatcttctcttgcgttttttgaacggctaattacatggtaagagaatacaatagaatgaaacaaatactgagaggtttatgacatggtgctgggaaaatatgcagcttttcctcacagcatattagccatttaattctgtatctcagattgtttaatgtatttgttattttcccatgaagttgtaacctacaagttactgtttttttatttcattactcatatacttgtagagattcttctttgtgcactatgtaacatcaaatgtaataaaatcctgattcatcgaaactgaatgatcatgaagttgaatattgtagtgcacctatttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="8638" stop="7659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8339" g_stop="7959" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-U599288" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8339" e_stop="7959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTATGTCTTTTAGGCAGTTAGCGCCGAGCAGACTATGACTCCACCATAATCTTCTCTTGCGTTTTTTGAACGGCTAATTACATGGTAAGAGAATACAATAGAATGAAACAAATACTGAGAGGTTTATGACATGGTGCTGGGAAAATATGCAGCTTTTCCTCACAGCATATTAGCCATTTAATTCTGTATCTCAGATTGTTTAATGTATTTGTTATTTTCCCATGAAGTTGTAACCTACAAGTTACTGTTTTTTTATTTCATTACTCATATACTTGTAGAGATTCTTCTTTGTGCACTATGTAACATCAAATGTAATAAAATCCTGATTCATCGAAACTGAATGATCATGAAGTTGAATATTGTAGTGCACCTATTTCAC</genome_strand>
        <mrna_strand>GCTTATGTCTTTTAGGCAGTTAGCGCCGAGCAGACTATGACTCCACCATAATCTTCTCTTGCGTTTTTTGAACGGCTAATTACATGGTAAGAGAATACAATAGAATGAAACAAATACTGAGAGGTTTATGACATGGTGCTGGGAAAATATGCAGCTTTTCCTCACAGCATATTAGCCATTTAATTCTGTATCTCAGATTGTTTAATGTATTTGTTATTTTCCCATGAAGTTGTAACCTACAAGTTACTGTTTTTTTATTTCATTACTCATATACTTGTAGAGATTCTTCTTTGTGCACTATGTAACATCAAATGTAATAAAATCCTGATTCATCGAAACTGAATGATCATGAAGTTGAATATTGTAGTGCACCTATTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601666" ref_strand="+" ref_description="SGN-U601666 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157351577|emb|CAO42536.1| (e_value=2e-89) unnamed; (*ATH) AT1G30520.1 (e_value=2e-78)  Symbol: None | acyl-activating enzyme 14 (AAE14), identical to acyl-activating enzyme 14 (Arabidopsis thaliana); similar to SP:Q42524 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana}; contains Pfam profile ... ; (*SWP) sp|Q84P24|4CLL6_ARATH (e_value=1e-22) 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6; ">
      <seq>ttacactccggcacgaggggatgatgtctatttacacactgcaccgctgtgccatattggtggtatatcatcagccctggccatgctaatggcaggaggtcgtcatattttactaccaaagtttgaagctaaattggctgttgaatccatagaccagcattgtgttacttctctcattacagttccagctatgatgactgatctaatctctttttataagacaaagcacatatctgtagggtccaaatctgtgaagaaggttcttaatggagctgggggtctttcatctagtcttatcaaaaatgtgattgagatattcccgagggctaaacttctttcagcttacggaatgaccgaggcgtgttcttctctgactttcatgactctttatgacccggcgagagagagttgtatccagcattcttatgccaacagctccaatttggcacataaaccagatggtacctgtgttggaaagcctgctccacatattgaaataaggattgctggggatgattcgtcttgtatagggaggattttgacacgaggtccccatttaatgcttggatactgggatcaaatgccaagcaataattcttctccagttgatgaatgttggcttgacactggtgatatagggcatatagatgattgtggaaatatctggctcgttgggcgcttgaagggccgaataaagagtgggggagaaaatgtttatcctgaagaagtggaagctgtcttattgcagcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="10618" stop="8440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10313" g_stop="10120" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="219" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10119" i_stop="9784" i_length="336">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9783" g_stop="9656" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="347" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9655" i_stop="9361" i_length="295">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9360" g_stop="8981" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="727" r_length="380" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8980" i_stop="8766" i_length="215">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8765" g_stop="8740" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="753" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-U601666" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10313" e_stop="10120"/>
          <exon e_start="9783" e_stop="9656"/>
          <exon e_start="9360" e_stop="8981"/>
          <exon e_start="8765" e_stop="8740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTATTTACACACTGCACCGCTGTGCCATATTGGTGGTATATCATCAGCCCTGGCCATGCTAATGGCAGGAGGTCGTCATATTTTACTACCAAAGTTTGAAGCTAAATTGGCTGTTGAATCCATAGACCAGCATAGTGTTACTTCTCTCATTACAGTTCCAGCTATGATGACTGATCTAATCTCTTTTTATAAGTAAAGCACTCAGCTGTTCTACTTGATGCAAAGACGAGTTTCAATTGGATTTATCTTTTGAACAAAGTTGAAGTGAATAATTACTGCATGGGCATACATATTACTGGATTATCAAGCTTTATCCTTCAAAGTTTACTACCAATATCAGTTTATAGCATTATTTCCTTTTGGTTTTACAAGGAATACTTTTTGTGATGTCCTGTTCTAAGATTAAAAGAAATTTGTTTCTCTTTTGGCGATTGATTATTTTCTAGGTTTCTCTGCATGGACAAATTAGCACATGCCACTTTGTTCATGATAACTGCAATTATTTGATTCAACTTTCACTTGTGATAGGACAAAGCACATATCTGTAGGGTCCAAATCTGTGAAGAAGGTTCTTAATGGAGCTGGGGGTCTTTCATCTAGTCTTATCAAAAATGTGATTGAGATATTCCCGAGGGCTAAACTTCTTTCAGCTTACGGTATGTTGGTCTTGTAACTGCTTTGACATACTTTCCCTTTTTCTCCATACTTATTTTTTTCTGAACAAATATTCTGTTGATAGCAGAAGATTGCAAGTTATTAAGTGGTCTTCCTGATGTATGACATATATCATGAACTACACATTGTGTTAGCATTACAAATTTATAGTGGTACAAGTCCGAACCTTCTTGGTGTATTCTGTGAAGTTAGCTTCATGAATATCTACTCTTCCCTAAACAAATCATTCTGTTTTAGTTGTACTCTCCTGATAAGTGTTCTTTAAATGTTTTGCAGGAATGACCGAGGCGTGTTCTTCTCTGACTTTCATGACTCTTTATGACCCGGCGAGAGAGAGTTGTATCCAGCATTCTTATGCCAACAGCTCCAATTTGGCACATAAACCAGATGGTATCTGTGTTGGAAAGCCTGCTCCACATATTGAAATAAGGATTGCTGGGGATGATTCGTCTTGTATAGGGAGGATTTTGACACGAGGTCCCCATTTAATGCTTGGATACTGGGATCAAATGCCAAGCAATAATTCTTCTCCAGTTGATGAATGTTGGCTTGACACTGGTGATATAGGGCATATAGATGATTGTGGAAATATCTGGCTCGTTGGGCGCTTGAAGGGCCGAATAAAGAGTGGGGGAGAAAATGTTTATCCTGAAGAGGTAAGCATCCAGACTTCAATGCGTTCATTCTCTTCGTTCAATTAAGCTATCAACACAAAAGAGAACTGCCTACGTGAAATCTCTTTAGTTGATGAGAAAGTGATAGACGTGTGTTAATTATTTTCTTGTAATGGAACACCATGATTTCTTTTTGCATTGTTTCCATGGGAATGTAATAGCCTGTAAATAATTCAGTGAGTTTGTTTGTGACACAGGTGGAAGCTGTCTTATTGCAGCATCC</genome_strand>
        <mrna_strand>GTCTATTTACACACTGCACCGCTGTGCCATATTGGTGGTATATCATCAGCCCTGGCCATGCTAATGGCAGGAGGTCGTCATATTTTACTACCAAAGTTTGAAGCTAAATTGGCTGTTGAATCCATAGACCAGCATTGTGTTACTTCTCTCATTACAGTTCCAGCTATGATGACTGATCTAATCTCTTTTTATAA................................................................................................................................................................................................................................................................................................................................................GACAAAGCACATATCTGTAGGGTCCAAATCTGTGAAGAAGGTTCTTAATGGAGCTGGGGGTCTTTCATCTAGTCTTATCAAAAATGTGATTGAGATATTCCCGAGGGCTAAACTTCTTTCAGCTTACG.......................................................................................................................................................................................................................................................................................................GAATGACCGAGGCGTGTTCTTCTCTGACTTTCATGACTCTTTATGACCCGGCGAGAGAGAGTTGTATCCAGCATTCTTATGCCAACAGCTCCAATTTGGCACATAAACCAGATGGTACCTGTGTTGGAAAGCCTGCTCCACATATTGAAATAAGGATTGCTGGGGATGATTCGTCTTGTATAGGGAGGATTTTGACACGAGGTCCCCATTTAATGCTTGGATACTGGGATCAAATGCCAAGCAATAATTCTTCTCCAGTTGATGAATGTTGGCTTGACACTGGTGATATAGGGCATATAGATGATTGTGGAAATATCTGGCTCGTTGGGCGCTTGAAGGGCCGAATAAAGAGTGGGGGAGAAAATGTTTATCCTGAAGAA.......................................................................................................................................................................................................................GTGGAAGCTGTCTTATTGCAGCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567924" ref_strand="+" ref_description="SGN-U567924 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157351577|emb|CAO42536.1| (e_value=5e-43) unnamed; (*ATH) AT1G30520.1 (e_value=5e-42)  Symbol: None | acyl-activating enzyme 14 (AAE14), identical to acyl-activating enzyme 14 (Arabidopsis thaliana); similar to SP:Q42524 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana}; contains Pfam profile ... ; ">
      <seq>ttccgaatttatcctcaagaaaaatggctaattactccaaggctcacgtttgccagtgcttgagccggttgtcgacggttcgccggagctcaacggtgatgataatcggagaaaggaggaagacgggtatggaatttgttgagggagttttgggcctggcccatgggcttattcaattgggccttaatcccggtgatgtcgtcgccatttccgctcttaacagtgatctgtatttggagtggttactggcagttgcatatgtaggagggattactgcacctttcaattaccgttggagcctggaagaagcaagagcagctcttcaggtagcaaagccaacaatattggtccacgatgcaactggtaatttctggaagtccgagtcttatgctgattctgtggcttctctaaggtggcaagtcttaatggatactccttgtgaacttcatagcactaatattggattaactactgaacagctgaaaagaagttgcgaaaggcgtttaacagcagactacctgtgggcacctaaggaagcagctataatatgctttacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="12945" stop="10676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12645" g_stop="12423" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12422" i_stop="11687" i_length="736">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11686" g_stop="11614" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="296" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11613" i_stop="11336" i_length="278">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.164" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11335" g_stop="11170" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="462" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11169" i_stop="11072" i_length="98">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11071" g_stop="10976" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="558" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-U567924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12645" e_stop="12423"/>
          <exon e_start="11686" e_stop="11614"/>
          <exon e_start="11335" e_stop="11170"/>
          <exon e_start="11071" e_stop="10976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGAATTTATCCTCAAGAAAAATGGCTAATTACTCCAAGGCTCACGTTTGCCAGTGCTTGAGCCGGTTGTCGACGGTTCGCCGGAGCTCAACGGTGATGATAATCGGAGAAAGGAGGAAGACGGGTATGGAATTTGTTGAGGGAGTTTTGGGCCTGGCCCATGGGCTTATTCAATTGGGCCTTAATCCCGGTGATGTCGTCGCCATTTCCGCTCTTAACAGGTACCTATACTTACTTATCTGCTGCCATTTTAATACTAGCTGCAAATGTGCAACTTTCATCGTATAATGTATTGTTTCGACGTATCATATTCTATCGTGAGTTATTGTATGGTATTCTATTGTTTTAACGAATATGTCTAGATAAATAATTTACGCACAAATAATTTGAAAGATAAATCTTAAAAAAAAATAAAATCGAATACTGGGTAGAGTTAGGATAATAAGGTAAGTAAATGATAAATAGGATAAGCAACAAAATGTGAAGAGGAAATTAAAGTAACAATGCAAGTCACACCAAATTGATTGGTACACATAATGAGACTTTTTGTCATTACATAACAATGAATTTGAGATACAATAAAAGTTTTAAGTAACAATCAAAATAAATCCAAACAAAGGTGTTATAGATGATGTGAACAGAATAATACAAAATAAATGGTGAAATGGCTGAACATTTTGATGATTCACATTACAAATAATACCACTTATTTCATTTCCCTCCTTTTGAAGTTTGATCAATATTTCTTTACACATGTTCTAAGTTGAATTTGATAGCTAAAATTACATATTAAGAGTAATTGTTAACATATTCACTATTTCAGAATAAAATTTGACCTTTCAATGTTATATTTTGTTCGAGAAGATAGTAAAAGCATTAAAGTGTATCGAAGTTTTCGCAACGGAACTATTTTTGGATTGTTAAAAAATCTTTTTCATCATCCAATTTTTGTTGCAGTGATCTGTATTTGGAGTGGTTACTGGCAGTTGCATATGTAGGAGGGATTACTGCACCTTTCAATTACCGTTGGGTAAATACACAAATGCTTAGTCTCTAATCTTACATTTGCTTCTGACATTGTAGGACATGGTTAGTAATTACTCAATGTGAAAAGTCCATACAACATAGCTCTTCGGTTGTAAGCATTTTAAATATATACATAAACTTAACTTCTATGAGGAAGCTGAGAATCGGTAGCATGAATAAGTAGTCCCATCACAGAAAAGCATCGATTTCTGTATGATATGGATTGAAGAAACTGTTCTGGATACAAGCATATTCTTTCTAGTAACTATTCTCAGCATGCAGAGCCTGGAAGAAGCAAGAGCAGCTCTTCAGGTAGCAAAGCCAACAATATTGGTCCACGATGCAACTGGTAATTTCTGGAAGTCCGAGTCTTATGCTGATTCTGTGGCTTCTCTAAGGTGGCAAGTCTTAATGGATACTCCTTGTGAACTTCATAGCACTAATATTGGTACGTGTTCAAGCATTCATGAGCAGTATGAATATAGATTTAAAAAAAAGATATTTTTTCTTCGGTTCGTTAATGGATCATTCTTACACACCTGCCAGGATTAACTACTGAACAGCTGAAAAGAAGTTGCGAAAGGCGTTTAACAGCAGACTACCTGTGGGCACCTAAGGAAGCAGCTATAATATGCTTTACCT</genome_strand>
        <mrna_strand>TTCCGAATTTATCCTCAAGAAAAATGGCTAATTACTCCAAGGCTCACGTTTGCCAGTGCTTGAGCCGGTTGTCGACGGTTCGCCGGAGCTCAACGGTGATGATAATCGGAGAAAGGAGGAAGACGGGTATGGAATTTGTTGAGGGAGTTTTGGGCCTGGCCCATGGGCTTATTCAATTGGGCCTTAATCCCGGTGATGTCGTCGCCATTTCCGCTCTTAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCTGTATTTGGAGTGGTTACTGGCAGTTGCATATGTAGGAGGGATTACTGCACCTTTCAATTACCGTTGG......................................................................................................................................................................................................................................................................................AGCCTGGAAGAAGCAAGAGCAGCTCTTCAGGTAGCAAAGCCAACAATATTGGTCCACGATGCAACTGGTAATTTCTGGAAGTCCGAGTCTTATGCTGATTCTGTGGCTTCTCTAAGGTGGCAAGTCTTAATGGATACTCCTTGTGAACTTCATAGCACTAATATTG..................................................................................................GATTAACTACTGAACAGCTGAAAAGAAGTTGCGAAAGGCGTTTAACAGCAGACTACCTGTGGGCACCTAAGGAAGCAGCTATAATATGCTTTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582653" ref_strand="+" ref_description="SGN-U582653 Tomato 200607#2 [7 ESTs aligned] ">
      <seq>cacgaggctcatctgcttctcttaactttttttttcttttcaattcaaaattttataatgaggcaaaattttctagttgttgttctcacattcattttcgtagtattatcgtcgtctcgatccaattgcagagagcttcgtccggcggagcacggattggcgacgacggagaatcaaaactcagattccagtactacaaacgatgaaattccggagatgatgtcgttcttcggcggtaatggcggccggcgggatactaagccgccggtagctaagccgatggcggagaacgtgacgtggatcggcggcgagagaggaggaatatcagttcatcacaacagtagagatcatgtgagggatgtgttgctgatttccagtttggtttgtggagctaccggcgtcgttttgcttgccgtttcagtgtttgtttgtgtcgttttgaggtttcggaaggagaaatcggtggaaaatggaaaagaaacgacgccgttgggtacgccagtagatgacgttgttctcgctcagaaaggaacttaactatcctgcttcgaaaattactcgaacggtaaacatttttcacctataattaattattatgagttcgagtcactatcgagcaaagagataaaaagctcgcagggaagagataaaaaaaacttacagtggtccattttcaatgtttttgtagcacctttttaatattcttctttctttttgttattctgtatgtatagccggagtatatatttatcatttttttttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="17939" stop="19300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18231" g_stop="18999" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-U582653" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18231" e_stop="18999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTATATCTCATCTGCTTCTCTTAACTTTTTTTTTTTTTTTTCAATTCAAAATTTTATAATGAGGCAAAATTTTCTAGTTGTTGTTCTCACATTCATCGTCGTAGTATTATCGTCGTCTCGATCCAATTGCAGAGAGCTTCGTCCGGCGGAGCACGGATTGGCGACGACGGAGAATCAAAACTCAGATTCCAGTACTACAAACGATGAAATTCCGGAGATGATGTCGTTCTTCGGCGGTAATGGCGGCCGGCGGGATACTAAGCCGCCGGTAGCTAAGCCGATGGCGGAGAACGTGACGTGGATCGGCGGCGAGAGAGGAGGAATATCAGTTCATCACAACAGTAGAGATCATGTGAGGGATGTGTTGCTGATTTCCAGTTTGGTTTGTGGAGCTACCGGCGTCGTTTTGCTTGCCGTTTCAGTGTTTGTTTGTGTCGTTTTGAGGTTTCGGAAGGAGAAATCGGTGGAAAATGGAAAAGAAACGACGCCGTTGGGTACGCCAGTAGATGACGTTGTTCTCGCTCAGAAAGGAACTTAACTATCCTGCTTCGAAAATTACTCGAATGGTAAACATTTTTCACCTATAATTAATTATTACGAATTCGAGTCACTATCGAGCAAAGAGATAAAAAGCTCGCAGGGAAGAGATAAAAAAAACTTACAGTGGTCCATTTTCAATGTTTTTGTAGCACCTTTTTAATATTCTTCTTTCTTTTTGTTATTCTGTATGTATAGCCGGAGTATATATTTATCATTTTTTTTATCTT</genome_strand>
        <mrna_strand>CACGA-GGCTCATCTGCTTCTCTTAACT--TTTTTTTTCTTTTCAATTCAAAATTTTATAATGAGGCAAAATTTTCTAGTTGTTGTTCTCACATTCATTTTCGTAGTATTATCGTCGTCTCGATCCAATTGCAGAGAGCTTCGTCCGGCGGAGCACGGATTGGCGACGACGGAGAATCAAAACTCAGATTCCAGTACTACAAACGATGAAATTCCGGAGATGATGTCGTTCTTCGGCGGTAATGGCGGCCGGCGGGATACTAAGCCGCCGGTAGCTAAGCCGATGGCGGAGAACGTGACGTGGATCGGCGGCGAGAGAGGAGGAATATCAGTTCATCACAACAGTAGAGATCATGTGAGGGATGTGTTGCTGATTTCCAGTTTGGTTTGTGGAGCTACCGGCGTCGTTTTGCTTGCCGTTTCAGTGTTTGTTTGTGTCGTTTTGAGGTTTCGGAAGGAGAAATCGGTGGAAAATGGAAAAGAAACGACGCCGTTGGGTACGCCAGTAGATGACGTTGTTCTCGCTCAGAAAGGAACTTAACTATCCTGCTTCGAAAATTACTCGAACGGTAAACATTTTTCACCTATAATTAATTATTATGAGTTCGAGTCACTATCGAGCAAAGAGATAAAAAGCTCGCAGGGAAGAGATAAAAAAAACTTACAGTGGTCCATTTTCAATGTTTTTGTAGCACCTTTTTAATATTCTTCTTTCTTTTTGTTATTCTGTATGTATAGCCGGAGTATATATTTATCATTTTTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599648" ref_strand="+" ref_description="SGN-U599648 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gagtttttgaaaaagattcatgttaatggcaactcttctagcttcttcttcatgggtttaacctatttttaatggggttttgagattctagatcagcgtcagcttaaaacctagttaagagacgatcgtgttactgtatcgaatgtgtcctcttgggattgttgctcaatctgttttgtgttcggcatatctatattctgaaatagttcgtcaatttagtgcttcatttgtcgaggcttttacctgaagaagacttgatgaggatttcccgagcatggttgagatcaatgtgaaaataagaatgccggaaagtctaaagtgtgctttcagaaatgaaaccattttgaacctaagcagatgaagataagtagacctggttaatttaatattgttttctgttgtttttttggtgtaaataattgattgcgtttgcttttaaatggggatttctctctcactttcttgttctgttagttggaaccatgagctctaagagttaatcacatcactaaaggtaaaaaacaatattttggatgttgctggataaagagaattttttaatatccttttctttctgtaactcggagtttagcttgatggtcaaatcaatgaagctgtaatggatcacgtgttgttattttgttgtgtgtaagtagctttgtgtcttttaaagttcagtattttggggcaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="27858" stop="29509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28158" g_stop="28271" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28272" i_stop="28629" i_length="358">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28630" g_stop="29209" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="694" r_length="580" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-U599648" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28158" e_stop="28271"/>
          <exon e_start="28630" e_stop="29209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTTTGAAAAAGATTCATGTTAATGGCAACTCTTCTAGCTTCTTCTTCATGGGTTTAACCTATTTTTAATGGGGTTTTGAGATTCTAGATCAGCGTCAGCTTAAAACCTAGGTATGCATATTTCATTTCCCTGTTCAAAATGCTATGTATATTTTTTGCGAATTTAAGGTGTTTTTGTTTCTATTGGTTTCCGTTGGGGGTGTGATAGCTGCATTAGAGCTAGACTAATTTGGATTTGCATGGGTTTCGAAAAAAATTTCATACCTAGGTCTCGAATGGCATCATCCACTGTTCGTTTCTTTTTTATTATTTTGATAGGGTTGTGTGTTTTATTAGAGAATTAATTTGTGGGTTTGTGAGAGAATTATATCTTGCAGTTATTATTTTGAATTTGTTTTTGTTTTATATTTTCACCTAGTGGTGGTTATATTTAAGAATGTCTGGCTTAATTGATTGTGATCTTGTGTAGTTAAGAGACGATCGTGTTACTGTATCGAATGTGTCCTCTTGGGATTGTTGCTCAATCTGTTTTGTGTTCGGCATATCTATATTCTGAAATAGTTCGTCAATTTAGTGCTTCATTTGTCGAGGCTTTTACCTGAAGAAGACTTGATGAGGATTTCCCGAGCATGGTTGAGATCAATGTGAAAATAAGAATGCCGGAAAGTCTAAAGTGTGCTTTCAGAAATGAAACCATTTTGAACCTAAGCAGATGAAGATAAGTAGACCTGGTTAATTTAATATTGTTTTCTGTTGTTTTTTTGGTGTAAATAATTGATTGCGTTTGCTTTTAAATGGGGATTTCTCTCTCACTTTCTTGTTCTGTTAGTTGGAACCATGAGCTCTAAGAGTTAATCACATCACTAAAGGTAAAAAACAATATTTTGGATGTTGCTGGATAAAGAGAATTTTTTAATATCCTTTTCTTTCTGTAACTCGGAGTTTAGCTTGATGGTCAAATCAATGAAGCTGTAATGGATCACGTGTTGTTATTTTGTTGTGTGTAAGTAGCTTTGTGTCTTTTAAAGTTCAGTATTTTGGGGCACCTA</genome_strand>
        <mrna_strand>GAGTTTTTGAAAAAGATTCATGTTAATGGCAACTCTTCTAGCTTCTTCTTCATGGGTTTAACCTATTTTTAATGGGGTTTTGAGATTCTAGATCAGCGTCAGCTTAAAACCTAG......................................................................................................................................................................................................................................................................................................................................................................TTAAGAGACGATCGTGTTACTGTATCGAATGTGTCCTCTTGGGATTGTTGCTCAATCTGTTTTGTGTTCGGCATATCTATATTCTGAAATAGTTCGTCAATTTAGTGCTTCATTTGTCGAGGCTTTTACCTGAAGAAGACTTGATGAGGATTTCCCGAGCATGGTTGAGATCAATGTGAAAATAAGAATGCCGGAAAGTCTAAAGTGTGCTTTCAGAAATGAAACCATTTTGAACCTAAGCAGATGAAGATAAGTAGACCTGGTTAATTTAATATTGTTTTCTGTTGTTTTTTTGGTGTAAATAATTGATTGCGTTTGCTTTTAAATGGGGATTTCTCTCTCACTTTCTTGTTCTGTTAGTTGGAACCATGAGCTCTAAGAGTTAATCACATCACTAAAGGTAAAAAACAATATTTTGGATGTTGCTGGATAAAGAGAATTTTTTAATATCCTTTTCTTTCTGTAACTCGGAGTTTAGCTTGATGGTCAAATCAATGAAGCTGTAATGGATCACGTGTTGTTATTTTGTTGTGTGTAAGTAGCTTTGTGTCTTTTAAAGTTCAGTATTTTGGGGCACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564647" ref_strand="+" ref_description="SGN-U564647 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147807603|emb|CAN68850.1| (e_value=6e-122) hypothetical; (*ATH) AT3G61790.1 (e_value=1e-90) | Symbol: None | seven in absentia (SINA) family protein, similar to siah-1A protein (Mus musculus) GI:297035; contains Pfam profile PF03145: Seven in absentia protein family | chr3:22882768-22884665 REVERSE | Aliases: F21F14.2; (*SWP) sp|Q8S3N1|SINA5_ARATH (e_value=2e-92) E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5; ">
      <seq>tctagatcagcgtcagcttaaaacctagggattaacagcattacaagagcaatgacaactgtaagtccttattttgatgacttgcgatgtcaacctgaggtcattcatcctccacaaaacgaagactgcatggacattggtgaacatatgaatgagcctgctcaacatacagcaaaacctaatgtgactgtttccagtagtgttcgtgaattgttggaatgccctgtatgcttaaatgctatgtatccacccatccatcagtgttccaacggtcacacactgtgttctggttgcaaacctagggttcacaatcgctgtccaacatgtcggcatgaacttggtaatatccgatgtcttgcgttggagaaggttgctgcatctcttgaactcccatgtaaataccagaactttggatgcataggcatcattccttactacagcaagctaaagcatgagtcccaatgctccttcagaccctataattgtccctatgcgggatcagactgcactgtcatcggtgacataccatatatagttgcccatctaaaagatgatcacaaagttgacatgcacatgggcagtactttcaaccatcgctatgtgaagtcaaaaccccatgaagtggaaaatgctacatggatgctcacagttttcagttgctttggtcagtacttctgtttacacttcgaagcatttcaacttggaatggcaccagtttatattgcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="27944" stop="33089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28244" g_stop="28271" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28272" i_stop="29533" i_length="1262">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29534" g_stop="29766" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="261" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29767" i_stop="30516" i_length="750">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30517" g_stop="30903" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="648" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30904" i_stop="32707" i_length="1804">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32708" g_stop="32789" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="730" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-U564647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28244" e_stop="28271"/>
          <exon e_start="29534" e_stop="29766"/>
          <exon e_start="30517" e_stop="30903"/>
          <exon e_start="32708" e_stop="32789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGATCAGCGTCAGCTTAAAACCTAGGTATGCATATTTCATTTCCCTGTTCAAAATGCTATGTATATTTTTTGCGAATTTAAGGTGTTTTTGTTTCTATTGGTTTCCGTTGGGGGTGTGATAGCTGCATTAGAGCTAGACTAATTTGGATTTGCATGGGTTTCGAAAAAAATTTCATACCTAGGTCTCGAATGGCATCATCCACTGTTCGTTTCTTTTTTATTATTTTGATAGGGTTGTGTGTTTTATTAGAGAATTAATTTGTGGGTTTGTGAGAGAATTATATCTTGCAGTTATTATTTTGAATTTGTTTTTGTTTTATATTTTCACCTAGTGGTGGTTATATTTAAGAATGTCTGGCTTAATTGATTGTGATCTTGTGTAGTTAAGAGACGATCGTGTTACTGTATCGAATGTGTCCTCTTGGGATTGTTGCTCAATCTGTTTTGTGTTCGGCATATCTATATTCTGAAATAGTTCGTCAATTTAGTGCTTCATTTGTCGAGGCTTTTACCTGAAGAAGACTTGATGAGGATTTCCCGAGCATGGTTGAGATCAATGTGAAAATAAGAATGCCGGAAAGTCTAAAGTGTGCTTTCAGAAATGAAACCATTTTGAACCTAAGCAGATGAAGATAAGTAGACCTGGTTAATTTAATATTGTTTTCTGTTGTTTTTTTGGTGTAAATAATTGATTGCGTTTGCTTTTAAATGGGGATTTCTCTCTCACTTTCTTGTTCTGTTAGTTGGAACCATGAGCTCTAAGAGTTAATCACATCACTAAAGGTAAAAAACAATATTTTGGATGTTGCTGGATAAAGAGAATTTTTTAATATCCTTTTCTTTCTGTAACTCGGAGTTTAGCTTGATGGTCAAATCAATGAAGCTGTAATGGATCACGTGTTGTTATTTTGTTGTGTGTAAGTAGCTTTGTGTCTTTTAAAGTTCAGTATTTTGGGGCACCTAAGGGTGTGGCCTAGTGGTTTATGAAGAGGGTTAAGACACAAGATCTCATGTTCAAGTCCTAGCGGAAAGAATACTAGGTATCAAGTAGAATTAGTCGAGGTGCCCATAAATGGCCAAGACACCACAATTATATAAGAGAAAGTTCATTATTCTGGATCCTGTGTGCTGAAATCAAATATACTCTCAAGTAACTGAGTTATTTTGCATCATATGAGGTGTAACTGAAAATTTAAGACATATCTTTTTATCAACTTCTGCATGCTTATTTTATCATCAACTATGGAGGTATATAACCATATTTGATGGAATACTCGGCATATGCAGGGATTAACAGCATTACAAGAGCAATGACAACTGTAAGTCCTTATTTTGATGACTTGCGATGTCAACCTGAGGTCATTCATCCTCCACAAAACGAAGACTGCATGGACATTGGTGAACATATGAATGAGCCTGCTCAACATACAGCAAAACCTAATGTGACTGTTTCCAGTAGTGTTCGTGAATTGTTGGAATGCCCTGTATGCTTAAATGCTATGTATCCACCCATCCATCAGGTGTGAAAATCTGAATTCTTGCTGATAAATGCTGACATCCTTACTAGCCTTTGCTTAGTGTTACATACAAAAAGATAATGTTCTCTTATCCTCTTGCTGTTACAGATGTTTGAATCTTCATGTAAACAAATGGGAAAAGAAAAAGTGAAAGAAAGTTAGAGGGAAAAATGGTAGTTTCGTCAGTTTTTTCTTTTAGAATAGTGTAGGATGAAGTTAACTTACATGTTCCTATTTATCTCTTTTATCTTTTAAAGAAGTTAGTGAAACAAATACTTCTCCATCTTCATAAGAATGGTGGGTTGTAAATTACAAGGGTGGTTTGGTTTTTGGACATTGATATATTTTAATTTTATTTGGTCTAATGTTTATCTGGAATGAATTTTATTTGGATAAACCTACAATCTGACCCGACTTGTTTGGGACTGGGCCATTGTTGTTAATTTATTAATTTCCGAATAAAATTTTACATATTCTGGAACTGTATAAAAGTAATAAAAAATCAGTTCTATATTGTCAAATATTTTTAGAACGTATTTGAAATAGTCAGTGTCAAAGAAAAATTGTTTGATTCTCAATAGTACCATTTAAACTGGAAAAGAGAACTGATTTACACTTACTAACAATTAGTGGAGTGATATCCTTAGTTCTTTGGCATAGCTGTTCAATTTGTTATGAAGGATTATTATCACTGCCTCTTGTTCTTGCATATGCAGTATTTAATTCTTCTCTATCTCTTTGCCCTTTTTGCAGTGTTCCAACGGTCACACACTGTGTTCTGGTTGCAAACCTAGGGTTCACAATCGCTGTCCAACATGTCGGCATGAACTTGGTAATATCCGATGTCTTGCGTTGGAGAAGGTTGCTGCATCTCTTGAACTCCCATGTAAATACCAGAACTTTGGATGCATAGGCATCATTCCTTACTACAGCAAGCTAAAGCATGAGTCCCAATGCTCCTTCAGACCCTATAATTGTCCCTATGCGGGATCAGACTGCACTGTCATCGGTGACATACCATATATAGTTGCCCATCTAAAAGATGATCACAAAGTTGACATGCACATGGGCAGTACTTTCAACCATCGCTATGTGAAGTCAAAACCCCATGAAGTGGAAAATGCTACATGGATGCTCACAGTAAGTATAATTGCTCTGCTTACATTCAGTGCAGATTAGTTTGTGGTCCAAGTCTAATAGAAATTAGGCAACTCTGACAAAAATTTATGATATGTGCTAGATTTGTGTATTGGAGAATGGTAATATTGTGATTTCTTTGCTATAAAGGATGGGCACTTGGACTTTAGGCTGTGAGTTTGAGACTGACTCTAAGTCTTTTTTTAAAACAGTTTTTTCATTTGAGATGTTGGACAGTTTTATTTGACGTCCCTACTTTTTGTATCTAATGATCAAGGGGGAAGAGGGTGGGGGGGATATTACTTCTCATTAAAAGTTCAGTTTGTTCATAAAATGAACAATAAGAAATTCAAACTCCTCTTGTCTTTATTATATAGTGTTTTAAATTGGAAGACGAGGAGACTTTCAGCTCTATTTGGAAGTCTCTACTAAGTTTGATGTATTGATAGCGCTTTGAAGGTTTTAGGTGCAATAAGTTTTTGTTGGATTGAGGATTAGTTGTTGGTTTCTCATGTGCTCAAAACTAAGATGTATAAGAATGACTCAGGATATACTCTTATCCATGAGATGATAAAAATACCAACAGCTGTACCCAAGAGTTTGCACAGGAATGAACATATTGGTTCATAATACAATGAAACTGATAATGTTCATTTGATAGTTTTTTTCTTTGGATTACAGTTACAGAGCTAATTATATTTCTAATGAAACGACTTTTATCTAATTCGTGTTAATGCTTACTTAGTGTTCGTAAAATATATTATGTCAGAGTTCTTATTACTTAGTGGTTATATGATTTACTCATTTTTAGGAAGAGCAAATGAGAAAGGTTGTTAATCTGGTTTAAGAATGCAATGCTGGAACCATATTGTATTTCTGTGGTCTTATTCTTAAAGCCATAATTTTCCAAACCAATAGTTTTCTACTTTTCTTGTTTGTCATATCTGGTGAAAATTTTTCAGTATTCTTTGGTTTTTATGGGTCACATTATATGGTCAGGGTATTTTTATACTTTTAGCGTATTACTTGCCCATAATTTTGGAGAACATAGAATGTGGGAGATGTGGGATGCAGCTTTGTGGGTTCTTTTCTTTTTTCATGGTTATACTTTTAGTTAACGATTTGCATGATTGTATAAGCGGAAATCCTTAAATATTTAGTCCGAATCACTGAATACTCTTATCTCAGTGGATTTGTAATTTGGCTGCCCATTTCAAAATGGTTGTTGTTATGGGGACCCTTAAGAATCTGGAGGATGAAATACTTGACATCATATTTACAGCAAGGGACATGGTAATTTGACCTTATTAGGGAACCTTTTTGTGATTTTTTTCTCTTTTGGGGAGAACCTTAGCCAGGACAAACTTTGAGCAACCTCCATCTTTGCACTGCATGCCTTTTTGGGGTCTCTTTCTAGGGTGAGTAGGTAGAATAAGTGTACTAGTAATTGGAAGTCAGCTTAACTAGTTATATGTTATGATGCAACTTATTAAGTATATAACTTGGCTCATCCTCTCCGCACTTGGCTACCCAGCTAAAGGCCCAATGAATTTCCCTATTGCTCCAGGTCATTTTGGGGCAAATAGATTATTTATGACGAAGAGAATGAGCTTCAGAGGCTTGTCGGATTGTTCTATACTTAACTAGTTATATGTTATGATGCAACTTATTTTGTGCATTTCCCTTGTAACTGTGTGGAATCTAACACACTGGCTTTAGATGATTTTAGCAGATATCATTGCTTAAACGTTTAGTCCTGTACCTTGTGTGTTTACATCTGAATACGTCATAAAAAATTTTCCTCCAGGTTTTCAGTTGCTTTGGTCAGTACTTCTGTTTACACTTCGAAGCATTTCAACTTGGAATGGCACCAGTTTATATTGCATTTT</genome_strand>
        <mrna_strand>TCTAGATCAGCGTCAGCTTAAAACCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTAACAGCATTACAAGAGCAATGACAACTGTAAGTCCTTATTTTGATGACTTGCGATGTCAACCTGAGGTCATTCATCCTCCACAAAACGAAGACTGCATGGACATTGGTGAACATATGAATGAGCCTGCTCAACATACAGCAAAACCTAATGTGACTGTTTCCAGTAGTGTTCGTGAATTGTTGGAATGCCCTGTATGCTTAAATGCTATGTATCCACCCATCCATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCAACGGTCACACACTGTGTTCTGGTTGCAAACCTAGGGTTCACAATCGCTGTCCAACATGTCGGCATGAACTTGGTAATATCCGATGTCTTGCGTTGGAGAAGGTTGCTGCATCTCTTGAACTCCCATGTAAATACCAGAACTTTGGATGCATAGGCATCATTCCTTACTACAGCAAGCTAAAGCATGAGTCCCAATGCTCCTTCAGACCCTATAATTGTCCCTATGCGGGATCAGACTGCACTGTCATCGGTGACATACCATATATAGTTGCCCATCTAAAAGATGATCACAAAGTTGACATGCACATGGGCAGTACTTTCAACCATCGCTATGTGAAGTCAAAACCCCATGAAGTGGAAAATGCTACATGGATGCTCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCAGTTGCTTTGGTCAGTACTTCTGTTTACACTTCGAAGCATTTCAACTTGGAATGGCACCAGTTTATATTGCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598289" ref_strand="+" ref_description="SGN-U598289 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118483454|gb|ABK93626.1| (e_value=5e-21) unknown; (*ATH) AT5G53360.1 (e_value=2e-21) | Symbol: None | seven in absentia (SINA) family protein, low similarity to siah-1A protein (Mus musculus) GI:297035; contains Pfam profile PF03145: Seven in absentia protein family | chr5:21665186-21666801 FORWARD | Aliases: K19E1.16, K19E1_16; (*SWP) sp|Q8S3N1|SINA5_ARATH (e_value=2e-20) E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5; ">
      <seq>aaactaacttattgaatttcaataaagagaactttcatggatacagattttttactgtgacagtaagtaatacacaacctacagcaagacacattctacaaactgacgtaggccttctcactaatgtattttaatcatggacaaagcaaatagaggttgcttcttgatcaagaaaatacattgatcagaagacttttaactgattgctagataaataaaaacctacttcttggactaaaacagtacatgaactgctacaactacaagtgtactgctacaatggacgtcattgttctttccatatcctaccagtaactctgagcttcagttctttccggtctccaccagaaaagaagagcgccatattacgctgaatgatgaggccatcaaaactgtctcgaaccttacggtaactgtccctgatgcttcgaggtaccccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="33614" stop="32573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33314" g_stop="32873" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-U598289" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33314" e_stop="32873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAACTTATTGAATTTCAATAAAGAGAACTTTCATGGATACAGATTTTTTACTGTGACAGTAAGTAATACACAACCTACAGCAAGACACATTCTACAAACTGACGTAGGCCTTCTCACTAATGTATTTTAATCATGGACAAAGCAAAGAGAGGTTGCTTCTTGTTCAAGAAAATACATTGATCAGAAGACTTTTAACTGATTGCTAGATAAATAAAAACCTACTTCTTGGACTAAAACAGTACATCAACTGCTACAACTACAAGTGTACTGCTACAATGGACGTCATTGTTCTTTCCATATCCTACCAGTAACTCTGAGCTTCAGTTCTTTCCGGTCTCCACCAGAAAAGAAGAGCGCCATATTACGCTGAATGATGAGGCCATCAAAACTGTCTCGAACCTTACGGTAACTGTCCCTGATGCTTCGAGGTACCCCTTG</genome_strand>
        <mrna_strand>AAACTAACTTATTGAATTTCAATAAAGAGAACTTTCATGGATACAGATTTTTTACTGTGACAGTAAGTAATACACAACCTACAGCAAGACACATTCTACAAACTGACGTAGGCCTTCTCACTAATGTATTTTAATCATGGACAAAGCAAATAGAGGTTGCTTCTTGATCAAGAAAATACATTGATCAGAAGACTTTTAACTGATTGCTAGATAAATAAAAACCTACTTCTTGGACTAAAACAGTACATGAACTGCTACAACTACAAGTGTACTGCTACAATGGACGTCATTGTTCTTTCCATATCCTACCAGTAACTCTGAGCTTCAGTTCTTTCCGGTCTCCACCAGAAAAGAAGAGCGCCATATTACGCTGAATGATGAGGCCATCAAAACTGTCTCGAACCTTACGGTAACTGTCCCTGATGCTTCGAGGTACCCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566008" ref_strand="+" ref_description="SGN-U566008 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|147784447|emb|CAN63881.1| (e_value=3e-44) hypothetical; (*ATH) AT1G30500.2 (e_value=1e-38) | Symbol: None | CCAAT-binding transcription factor (CBF-B/NF-YA) family protein, contains Pfam profile: PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA) | chr1:10804432-10806297 REVERSE | Aliases: None; (*SWP) sp|Q84JP1|NFYA7_ARATH (e_value=1e-37) Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7; ">
      <seq>gaattgatcttctcaaacgagatttccaattcaaatttaatcatattatattaatatcaatataaatatcatataaatctaaatttaattatgctctcagaaaataaaggatgacaaaaagaatagtaacagttacaaacacgtagtaaagctctctctagagaaggaaattcaacagagaacaccaaaattaaagctgcttattggttttcgtatacacgaagctcttcccgaaaggtttgttactttggagattctgtggcaagcagcattatgacgtcctcgcttcattatcattcagatggtagtgagaatgaacagtcagaaaatcaatcagaagcccacagcgagtcttcatcgcctgcagctggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatgttgcaggctcaaacagcttatccatatccagacccatactataggagcatctttgcaccgtatgatgcacagccttatcctccacaaccttatccagcacaaccaatggttcacgttcagctaatgggaattcaacaagcgggtgttcctttgccatcagatgcgatagacgaacctgtttttgttaatgcaaaacagtatcatggcatcttgaggcgtcgacaatctcgcgcgaaagctgagtcagaaaagaaacttctgaaagctaggaagccttacttgcatgaatcacgccatttgcatgcattgaaaagagctagaggatgtggaggtcgtttcctgacagcaaaggaaactgataatcagcagaaacaggatgaatctggtgataaatctcaagtcaacattaatctcgagtctggaaaagacaaggtcgcttcttcagagaatgcctcttgatctatgcaatatcaaggactttgtggaccatagtatgttgttactgtttgtagaaacagcagtgcttttgtttaaatagaattgtggtagctgggcaaaatcagggtaattgtggtgttctgtatgtttatctgagtgtagatagatcggaataggcctactcgtttgagagctacaaagtggccgctgggcgtatgttctctaaataccatctctctgagcttgtttgtagacattctttcttgtcctttcgtaattgccttgtgattccttcaaaatgttgttctggtaagtgtatggaatatcgagtcagaaatttgagtaataacgtttggcactacgttttgttagtttaagaagataagcgtgcagcactgttggttgatgaattctaattttccaaggtcaatgcattctgtgtcaatatcttggttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="33841" stop="40476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34141" g_stop="34378" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35097" g_stop="35160" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="301" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35912" g_stop="36057" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="447" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36058" i_stop="37954" i_length="1897">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37955" g_stop="38062" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="555" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38153" g_stop="38317" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="720" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38318" i_stop="39552" i_length="1235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39553" g_stop="40176" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="1344" r_length="624" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-U566008" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1345</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34141" e_stop="34378"/>
          <exon e_start="35097" e_stop="35160"/>
          <exon e_start="35912" e_stop="36057"/>
          <exon e_start="37955" e_stop="38062"/>
          <exon e_start="38153" e_stop="38317"/>
          <exon e_start="39553" e_stop="40176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCTATCTTCTCAAACGAGATTTCCAATTCAAATTTAATCATATTATATTAATATCAATATAAATATCATATAAATCTAAATTTAATTATGCTCTCAGAAAATAAAGGATGACAAAAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAGGTAATTTTTCTTCTTCCTCTATTTAAAAATCCACTAGTAAAGTGGATTTTGGAATCGAAAATTGAGGAATTGAGCTTCGTAATTTGTGTGTTTTGCGTTCATATTTGAGCTGTTTCACTGTTCAGTTGCTGTTTACGGTGAATTCGATGTACGCCTGTTATTTGGATTGATTTTTTAATTTTTTTGTTTTTTTTTATGAAATTGAGTTTAGATGCTGAAAAAGTTGAGATGTAATACGCTGAATTCGTTAACTCATTGTATGATTAATTGAATTTCATTTAGATTTACATGTTTTTGCAGAAAGAAAATGAAGAAATTTCAAAAGGAATGGAAAATTGGATTTGAGCTTGGCAATTTCTGTTATTTGTTGTTTCCCTGATAATTAAAACTTTTTTCCTTACATAGTTAATTGAGGTTTGAACCGGAATATGTGAAAATCATATAAATTTAAGGCTTTTTGTAGTTTGAAAGATGAAAAATATGAAGTGGAATGTATCTGATTTAATTTCACAAGTAATTTGGCTTTGTGGCATGGATATTTGAAGGAAATGGTTTTATGTGTAGAAATGTTGACACATGACAATCGAAGAAGTCTGATCATTATATCTGAAGGTTGAATTCAAATTTTATAGTATGATTTTTTTATGCTCCTGGATGTATATTTTGTGGGACAGAGTGAACTTTTATTTTGCTGATCCATCTTTTGTTAACTGCATAGGTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTGTTTTACAAGCTTGTGTTATTTTATAACTAATTCTCTAGGCATTACTTCGTTTTCAGATTGCTCGATCTGTTTGTCACTCTCTACAACTGCACTTGCCACAATTTGGCTAAAATTTTCTTGTAGGTCTACTGGCCTAGAGTTTCATATAAGGTAAGTCTTTGTCCTATAGGAGGGTTACACTAGCAGAATTCTTTGAACACCATGGATAAGCTGATCTGAATCAACTAGACTCTTTATGCAGCAGCTTGAGCTTGAAGCATATAGTTAGTTACATAGTAAACACTTTTAAAATGCAATCCTTTTAAATTTTGCCATCTTTTCAGCTTTGTGAATGGAATTTAGTGCTAAAATTGTAAATCCATTGTTCCCTGTTTGGACTGCTGCATAAAGATTTTCCTGGATTAACCTGGAGCTGGATGTTTTATCTCCCTCCCTCCATTTGGCACACATAATAACCTGCAATCTTAAGTATTCTTAGTAGGACACTTATTTTTATTGGACACCTTAAACTAGAGGCTTCTGATAGAGATTGCAGATCTTTAAGGTACCAGTTGGGGAATATTTGAAGCCTGTTTCTATGCCTACTAATTTTATATTTAAGCTCTGTGATTGGTTATATCGAGTCTATTTTTCGGATAATAAATCTGCATCAATTTTTCATTAGTTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATGGTATTACATTTTCATAACACTTCTCATTTGGACTTCATCTATGAAATATCCCTATGAATTTGAGAGCTTAGTTGTGTCATTTTCTGTCAGGTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAGGTATTTTGTCGAAAAATATTTTTCTGTATTTTTATTTGTTATACTATGTTGCTTTAGTATCCAATATTGCAATTTACAGGCAACCTTGACAGCTTGTTTGTGGTTCATCTGTTGATTTATCACTTCCTACTGTTAAGTGCTAAATAGCCTCCCAGATGATTCATGTTTGTGATGAACATATTTTAAGTGTCTGTGCATCTCTAGTGCTATTTTAAACACATACAGGGGTCGCTTGGTTCACTTATTAGCTATTTTAGAATTATATATATGAAATATTATGCCATTAATAATATATAGAAATTATTATGCAGTGAATAATGATGCGAGGGTTGTTACACATCAAAAAATAATATAGGGATTCTTATTCAGGGATATCTACTATGAGAGCATCTTTCTCAATATATCCCACATAAAATATTACATAGGTTTCTGCATAATTTAGGCCAATATTAGTAGTGCACACTTTAATTCTGGAAATATAAAGGCAATTTAGTAATGTAGAGTTCTATGTTGCAATCATATTTGTTACACAGAATTTTATATCATGATTGGATTTCCTTATGAGTCCCAATCAAACGACAAAACCATAAAATTTCCTTTACTAATAATATATACTGCAAGTGAAGTGTGGATAGCAGAGCATGAGAGAGACAGTAGAGCAAGTTCTCAAATGTATATTTTTTCTGGACTGTAACTATAATCTCCTCTATTTACAGTTGCTACGCATAAAAATCTAAATAGTTACTAGTATACCATATTAGTTTCACATTACATTGTACAAAGGTTCTGATGCAACAAAAGCTTTTAATTCTAGAACATCTATATTCTATATGATTGATCAATTGCCCATCAAAGTTTATATTGCTCTGATCTTTGGGAAACATAATTTTGATGCATTTTTTAAAAATAAAGTAAAATATTGTTGCTGGAGAACAGAGTGATTCGGTTCCCGATTCGTAATTAAGGATCTTTCTCCAAGCAAAAAATCCATTTTCTCTATGATTAATATGTATATGTCGAAAGTTATGGGTTCTGATCAATAATGTCTTCTACTCCCTAATAAATAGCTCAAAGATGGTTATCAACTGTGCTGGAAACATCTGCAAGATCCAATAACATACAGTTGGTAATAAGGTGCCTTACACCATGATTAGAAGTTCTAATATCTGTTTCTGAGGCTATGTTTTTCCAGCACGAATACCTTGGGAGGCTCACAGTGCAAAATAATCTTGCAGCCTTACTTGCATGAATCACGACATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAAACTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTAAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCCTTCAAAATGTTGTTCTAGTAAGTGTATGGAATATCGAGTCAGAAATTTGAGTAATAACGTTTGGCACTACGTTTTGTTAGTTTAAGAAGATAAGCGTGCAGCACTGTTGGTTGATGAATTCTAATTTTCCAAGGTCAATGCATTCTGTGTCAATATCTTGGTTATCT</genome_strand>
        <mrna_strand>GA-ATTGATCTTCTCAAACGAGATTTCCAATTCAAATTTAATCATATTATATTAATATCAATATAAATATCATATAAATCTAAATTTAATTATGCTCTCAGAAAATAAAGGATGACAAAAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATGCACAGCCTTATCCTCCACAACCTTATCCAGCACAACCAATG..........................................................................................GTTCACGTTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACTTGCATGAATCACGCCATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAATCTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTTAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCCTTCAAAATGTTGTTCTGGTAAGTGTATGGAATATCGAGTCAGAAATTTGAGTAATAACGTTTGGCACTACGTTTTGTTAGTTTAAGAAGATAAGCGTGCAGCACTGTTGGTTGATGAATTCTAATTTTCCAAGGTCAATGCATTCTGTGTCAATATCTTGGTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566009" ref_strand="+" ref_description="SGN-U566009 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>gaaaataaaggatgacaaaacgtaatagtaacagttacaaacacgtagtaaagctctctctagagaaggaaattcaacagagaacaccaaaattaaagctgcttattggttttcgtatacacgaagctcttcccgaaaggtttgttactttggagattctgtggcaagcagcattatgacgtcctcgcttcattatcattcagatggtagtgagaatgaacagtcagaaaatcaatcagaagcccacagcgagtcttcatcgcctgcagctggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatgagacaccactttgacatttgtaacatccaacatgaaaccgcatatatttcttgcccaaatagttggttgtgcaaaagcctgaaagccaagttgatcataaatatcttaatgtggggcataatggagctatgattgtgcttatggattcttgtatctagaggtaaattcatatgaagcaaaatatattattttagatttatgaatgattagttggatgttccacgccaacctataaattgaagaaaggtgcttattagatagcattacagaatacattggggtcgttcagactatttgagaaagcaataggtgaatatgaacctaagaaaaggatattaatgcatcaagtttctttactattccaaatgtattcagtagtaggatggaaatatttctacttatagattgtcatgttgtacacctggcggatataacaagggttgttagtctctgatgaggaaaatttgtatatttcttgaagatagggaatgacctttttgtgcttattgcttttgattagttgatgactttctctagataggacttagaagttagaaccactaataagaacattcagttgtgagaagaaacacatgtaccctttctagtgtgtgcttatacaaagagcataaagtttttgaatgatgatgttgtaacattaagaatagatatttcatgacttctcgatatttacaatccatcattgttgggtttgtcaatcataactgaagagaccttgggacggagagtgatttccattttggtcttgttttctggtattttgattggtctttaaatcaggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="33941" stop="37528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34241" g_stop="34378" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35097" g_stop="35160" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="203" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35912" g_stop="36057" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="349" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36058" i_stop="36424" i_length="367">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36425" g_stop="37228" g_length="804"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="1154" r_length="805" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-U566009" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>1152</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34241" e_stop="34378"/>
          <exon e_start="35097" e_stop="35160"/>
          <exon e_start="35912" e_stop="36057"/>
          <exon e_start="36425" e_stop="37228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATAAAGGATGACAAAAAG-AATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAGGTAATTTTTCTTCTTCCTCTATTTAAAAATCCACTAGTAAAGTGGATTTTGGAATCGAAAATTGAGGAATTGAGCTTCGTAATTTGTGTGTTTTGCGTTCATATTTGAGCTGTTTCACTGTTCAGTTGCTGTTTACGGTGAATTCGATGTACGCCTGTTATTTGGATTGATTTTTTAATTTTTTTGTTTTTTTTTATGAAATTGAGTTTAGATGCTGAAAAAGTTGAGATGTAATACGCTGAATTCGTTAACTCATTGTATGATTAATTGAATTTCATTTAGATTTACATGTTTTTGCAGAAAGAAAATGAAGAAATTTCAAAAGGAATGGAAAATTGGATTTGAGCTTGGCAATTTCTGTTATTTGTTGTTTCCCTGATAATTAAAACTTTTTTCCTTACATAGTTAATTGAGGTTTGAACCGGAATATGTGAAAATCATATAAATTTAAGGCTTTTTGTAGTTTGAAAGATGAAAAATATGAAGTGGAATGTATCTGATTTAATTTCACAAGTAATTTGGCTTTGTGGCATGGATATTTGAAGGAAATGGTTTTATGTGTAGAAATGTTGACACATGACAATCGAAGAAGTCTGATCATTATATCTGAAGGTTGAATTCAAATTTTATAGTATGATTTTTTTATGCTCCTGGATGTATATTTTGTGGGACAGAGTGAACTTTTATTTTGCTGATCCATCTTTTGTTAACTGCATAGGTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCAC-CGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTAT</genome_strand>
        <mrna_strand>GAAAATAAAGGATGACAAAACGTAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG...............................................................................................................................................................................................................................................................................................................................................................................AGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTCCACGCCAACCTATAAATTGAAGAAAGGTGCTTATTAGATAGCATTACAGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTATTCAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAACAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGACTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGATGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566007" ref_strand="+" ref_description="SGN-U566007 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>aaaaagaatagtaacagttacaaacacgtagtaaagctctctctagagaaggaaattcaacagagaacaccaaaattaaagctgcttattggttttcgtatacacgaagctcttcccgaaaggtttgttactttggagattctgtggcaagcagcattatgacgtcctcgcttcattatcattcagatggtagtgagaatgaacagtcagaaaatcaatcagaagcccacagcgagtcttcatcgcctgcagctggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatggtatatttgaagcaccaattaacttctaatgaccgatttctgaaaatcactattaagtcctgaattgatatcttctgcttgataattattcttgctgatagatgcaaccgccttcttgttcttccgatcagatgttatcatagaactgctgtcgtgaataaattaggggtattgtcagaagtcaaataggttacaaatatctgaagaattgattgattgtaataggtatgtagatatattgacgatggttctgtgaatattatcattttgcacttgttaataggcttctttattttgggagatgaagtgcacatgttcatatttggctataattagaatgtgatatcgttcttctcttcattagcagagacaccactttgacatttgtaacatccaacatgaaaccgcatatatttcttgcccaaatagttggttgtgcaaaagcctgaaagccaagttgatcataaatatcttaatgtggggcataatggagctatgattgtgcttatggattcttgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="33957" stop="36879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34257" g_stop="34378" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35097" g_stop="35160" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="186" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35912" g_stop="36579" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="854" r_length="668" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-U566007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34257" e_stop="34378"/>
          <exon e_start="35097" e_stop="35160"/>
          <exon e_start="35912" e_stop="36579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAGGTAATTTTTCTTCTTCCTCTATTTAAAAATCCACTAGTAAAGTGGATTTTGGAATCGAAAATTGAGGAATTGAGCTTCGTAATTTGTGTGTTTTGCGTTCATATTTGAGCTGTTTCACTGTTCAGTTGCTGTTTACGGTGAATTCGATGTACGCCTGTTATTTGGATTGATTTTTTAATTTTTTTGTTTTTTTTTATGAAATTGAGTTTAGATGCTGAAAAAGTTGAGATGTAATACGCTGAATTCGTTAACTCATTGTATGATTAATTGAATTTCATTTAGATTTACATGTTTTTGCAGAAAGAAAATGAAGAAATTTCAAAAGGAATGGAAAATTGGATTTGAGCTTGGCAATTTCTGTTATTTGTTGTTTCCCTGATAATTAAAACTTTTTTCCTTACATAGTTAATTGAGGTTTGAACCGGAATATGTGAAAATCATATAAATTTAAGGCTTTTTGTAGTTTGAAAGATGAAAAATATGAAGTGGAATGTATCTGATTTAATTTCACAAGTAATTTGGCTTTGTGGCATGGATATTTGAAGGAAATGGTTTTATGTGTAGAAATGTTGACACATGACAATCGAAGAAGTCTGATCATTATATCTGAAGGTTGAATTCAAATTTTATAGTATGATTTTTTTATGCTCCTGGATGTATATTTTGTGGGACAGAGTGAACTTTTATTTTGCTGATCCATCTTTTGTTAACTGCATAGGTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATC</genome_strand>
        <mrna_strand>AAAAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593237" ref_strand="+" ref_description="SGN-U593237 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|217071358|gb|ACJ84039.1| (e_value=3e-29) unknown; (*ATH) AT2G21580.1 (e_value=3e-31) | Symbol: None | 40S ribosomal protein S25 (RPS25B) | chr2:9243635-9244826 FORWARD | Aliases: F2G1.15, F2G1_15; (*SWP) sp|Q9SIK2|RS252_ARATH (e_value=3e-30) 40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B; ">
      <seq>tcttcattccagttccttcttctgttgccctagcctccgccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacccaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaattatgcaaccttttgctgaaaatattcatgtcctccaggcctctttttggttcttagtattaaggtttatgaatagtgcattgagttatttctatatcgtacaatattagtttcatatttcctaataaaattatttgcaatgcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43213" stop="40338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42913" g_stop="42832" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="157" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="292" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40638" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="675" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-U593237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42913" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGG</genome_strand>
        <mrna_strand>TCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579952" ref_strand="+" ref_description="SGN-U579952 Tomato 200607#2 [36 ESTs aligned] (*GB) gi|217071358|gb|ACJ84039.1| (e_value=2e-29) unknown; (*ATH) AT2G21580.1 (e_value=2e-31) | Symbol: None | 40S ribosomal protein S25 (RPS25B) | chr2:9243635-9244826 FORWARD | Aliases: F2G1.15, F2G1_15; (*SWP) sp|Q9SIK2|RS252_ARATH (e_value=2e-30) 40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B; ">
      <seq>gctctcttcattccagttccttcttctgttgccctagcctccgccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaattatgcaaccttttgctgaaaantattcatgtcctccaagcctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43215" stop="40438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42917" g_stop="42832" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="161" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="296" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40738" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="580" r_length="284" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-U579952" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42917" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAA-TATTCATGTCCTCCAGGCCTCTTTT</genome_strand>
        <mrna_strand>GCTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAANTATTCATGTCCTCCAAGCCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578678" ref_strand="+" ref_description="SGN-U578678 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|217071358|gb|ACJ84039.1| (e_value=7e-11) unknown; (*ATH) AT2G21580.1 (e_value=3e-12) | Symbol: None | 40S ribosomal protein S25 (RPS25B) | chr2:9243635-9244826 FORWARD | Aliases: F2G1.15, F2G1_15; (*SWP) sp|P46301|RS25_SOLLC (e_value=2e-11) 40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25; ">
      <seq>agcgcctttctcttcattccagttccttcttctgttgccctagcctccgccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacccaagtataagcttatcactccttccgtcctctctgaccgtttgagggtatgtgtattcttttagcatggatctagttattatgtattgaatatgaagtgtgttttgtgcaatgtgaatatgcttgcttataagaatgaatttttatcaactgttggtcatttagattagttattgaaatatattgctcagggttctgtgtggtatagtttgtgaagttgtcgaatgattctacggtgtttatatttgaatagttgtgttttacataaactaactcagctgaaaagcatagctagtgaattgtggtgttgtagattttcaaaatactcggcagcagtagtgtacgagtctagcaatagtgtatgagtctaatgatttagttctggttgagtcgcagcagacaagtttgtttttggtttttggagtacgcgtaccaaatttctttggtttagtcctatatgggaaaagcaagctctcatatggtgaaattgatacactgaagctgattaatcattttccaagtcttgtatagttgtttatgaaattattttcttgaatggtaaaagaattagatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43223" stop="41620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42923" g_stop="42832" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="167" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="41920" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="831" r_length="664" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-U578678" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42923" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="41920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGCCTTTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAA</genome_strand>
        <mrna_strand>AGCGCCTTTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575604" ref_strand="+" ref_description="SGN-U575604 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|45479746|gb|AAS66760.1| (e_value=3e-159) PHAVOLUTA-like HD-ZIPIII protein [Nicotiana sylvestris]; (*ATH) AT2G34710.1 (e_value=2e-121) | Symbol: None | homeobox-leucine zipper transcription factor (HB-14), identical to homeodomain transcription factor (ATHB-14)GP:3132474 GB:Y11122 (Arabidopsis thaliana); | chr2:14646402-14651348 REVERSE | Aliases: T29F13.8, T29F13_8; (*SWP) sp|O04291|ATB14_ARATH (e_value=2e-120) Homeobox-leucine zipper protein ATHB-14 OS=Arabidopsis thaliana GN=ATHB-14; ">
      <seq>gtgatggttggacaattatgggtagtgatggtgttgatgatgtaacaattgctgtaaactcatcaccaagtaaattccttgatgcacaatacaacaccttgtcaattctccctacttttggaggagtactgtgtgcacgggcatcaatgcttcttcaggatgtttgccctgctttgcttgtccgtttccttagacgagcaccgttcggagtgggctgactatggagttgatgcttactcttctgcatctcttaaagccagtccttatgctgtcccttgtgccagacctggtgtcttccccagtagccaggtcattttaccgcttgctcagactgtggaacatgaggagtttcttgaggttgttcggctagagggtcatgctttctctccagatgacatagctttatcgcgggatatgtatttgttacagctatgcagtggagttgaagagaatgccacaggtgcctgtgcgcagcttgtttttgcacatattgatgaatcttttggtgatgatgctccattgcttccatctggtttctctgtcattccactggagcctaaatcagattctcctagtgctgctcggactttagatttagcttcaactcttgaagctagaactggtgggacacggccagctggtgaagttgaaggaagcagttacaaccatcgttcagtcttgacaattgcattccagtttgcctttgagaatcactatcgagaaaatgtaactgctatggctcgccaatatgtacaaaacattgtaagctctgttcacagaattgctatggctattgcaccctctcgactctgctctcagttgacacctaaatccttccctggttcaccacaagctgtcactttggcgagatggatttgcaggagctataagaatcatactggtggagaattgctacagatggattctctagctgccggtgatgctgttctgaagcaactatggcatcatactgattcaataatgtgctgctccgccacaatgaatgaatctgcatttttttcatttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="56408" stop="58997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56707" g_stop="56864" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56865" i_stop="56968" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56969" g_stop="57157" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="348" r_length="190" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57158" i_stop="57266" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57347" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="429" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57348" i_stop="57429" i_length="82">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57430" g_stop="57564" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="564" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57565" i_stop="57821" i_length="257">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57822" g_stop="58147" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="890" r_length="326" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58148" i_stop="58438" i_length="291">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58439" g_stop="58553" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="891" r_stop="1005" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58554" i_stop="58672" i_length="119">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58673" g_stop="58697" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1006" r_stop="1030" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-U575604" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>1029</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56707" e_stop="56864"/>
          <exon e_start="56969" e_stop="57157"/>
          <exon e_start="57267" e_stop="57347"/>
          <exon e_start="57430" e_stop="57564"/>
          <exon e_start="57822" e_stop="58147"/>
          <exon e_start="58439" e_stop="58553"/>
          <exon e_start="58673" e_stop="58697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGGTTGGACAATTATGGGTAGTGATGGTGTTGATGATGTAACAATTGCTGTAAACTCATCACCAAGTAAATTCCTTGATGCACAATACAACACCTTGTCAATTCTCCCTACTTTTGGAGGAGTACTGTGTGCACGGGCATCAATGCTTCTTCAGGTATGTTTAAGTTCAAATACTTATAGGACATATTGCTGTAATAGTATCACATAATTCTAAGTGCTTGATGTGGTGTTATTCTTTTTTGCACTTCCCTTTTGTAGGATGTTTGCCCTGCTTTGCTTGTCCGTTTCCTTAG-GGAGCACCGTTCGGAGTGGGCTGACTATGGAGTTGATGCTTACTCTTCTGCATCTCTTAAAGCCAGTCCTTATGCTGTCCCTTGTGCCAGACCTGGTGTCTTCCCCAGTAGCCAGGTCATTTTACCGCTTGCTCAGACTGTGGAACATGAGGAGGTAAGTAGGTCATATGCTATATTTTGTGATTGTGACTGTTGCAGACGTTGTCTATGGTCTCTGACTGATCATATAACCGCGGTTTAATCTGAATTTACTATGTACCTAGTTTCTTGAGGTTGTTCGGCTAGAGGGTCATGCTTTCTCTCCAGAGGACATAGCTTTATCGCGGGATATGTATTTGTTACAGGTTGATAGCTCTCCCTTGGTTGAGATTCACTTTGTTCTTTCTGAGGGTTTTAAGTTCTAATGCTCTTGCTATAACAATGCAGCTATGCAGTGGAGTTGAAGAGAATGCCACAGGTGCCTGTGCGCAGCTTGTTTTTGCACATATTGATGAATCTTTTGGTGATGATGCTCCATTGCTTCCATCTGGTTTCTCTGTCATTCCACTGGAGCCTAAATCAGTTAAGTGATGTCTATTTTGTATCCTACAACTTCAACGTGTTATGAATTTCTTTAAGCTTTTTAGACACAAACTTTTTCTGCCTTTCATTTTTTTGAGAATTGTAGATTATTTATGGTGCTTTGAAAAGTTTATTAGCATCTGAAGGTGCAATTTGGTGTTTGAGAAGTCACCTGGCATCCGAAAACTGTCATGGATATGTGGATTAGTTTCTTACCTTATTCTTACAGTTTAGTACTGCTACTCCTTGTGATGCAGGATTCTCCTAGTGCTGCTCGGACTTTAGATTTAGCTTCAACTCTTGAAGCTAGAACTGGTGGGACACGGCCAGCTGGTGAAGTTGAAGGAAGCAGTTACAACCATCGTTCAGTCTTGACAATTGCATTCCAGTTTGCCTTTGAGAATCACTATCGAGAAAATGTAGCTGCTATGGCTCGCCAATATGTACGAAGCATTGTAGGCTCTGTTCAGAGAGTTGCTATGGCTATTGCACCCTCTCGACTCTGCTCTCAGTTGACACCTAAATCCTTCCCTGGTTCACCAGAAGCTGTCACTTTGGCGAGATGGATTTGCAGGAGCTATAAGTAAGGGTTCTAACTTCTAAGGTCTTTGCAGTAATTCATAGTTATCTGAGTTTTGCACCACCAATTAGCAATTCCTGATTTATGCAGATAAATGTTGTTGTGTGAAGCATAGTATAAATGAAAGGTTCTCAATTCACATCCAAAACTGAGGCCACTCTGATTCATTTGCACCCTTGCATTAACCAATGCCGAACGACTCATCCCTTAACTTGCACCCTGATGTACTCGTGGAACACTTTTAACATTTTTCCCAGTTTCTCTTCCTGGTTTTACTGATTCAATGTATTTCAGGAATCATACTGGTGGAGAATTGCTACAGATGGATTCTCAAGCTGCCGGTGATGCTGTTCTGAAGCAACTATGGCATCATACTGATTCAATAATGTGCTGCTCCGTCAAAATGAATGTCAGTAACATCAGCACATGTTGTTTCGACGCTATGCTTTTCTGATAAGAAAGGTTTCTCCACGATTCCTTTTCAAGGGAAATCTGATGATAGCTAAATGGTTTATCTACTTAATGCAGGATTCTGCATTTTTTTCATTTGCAA</genome_strand>
        <mrna_strand>GTGATGGTTGGACAATTATGGGTAGTGATGGTGTTGATGATGTAACAATTGCTGTAAACTCATCACCAAGTAAATTCCTTGATGCACAATACAACACCTTGTCAATTCTCCCTACTTTTGGAGGAGTACTGTGTGCACGGGCATCAATGCTTCTTCAG........................................................................................................GATGTTTGCCCTGCTTTGCTTGTCCGTTTCCTTAGACGAGCACCGTTCGGAGTGGGCTGACTATGGAGTTGATGCTTACTCTTCTGCATCTCTTAAAGCCAGTCCTTATGCTGTCCCTTGTGCCAGACCTGGTGTCTTCCCCAGTAGCCAGGTCATTTTACCGCTTGCTCAGACTGTGGAACATGAGGAG.............................................................................................................TTTCTTGAGGTTGTTCGGCTAGAGGGTCATGCTTTCTCTCCAGATGACATAGCTTTATCGCGGGATATGTATTTGTTACAG..................................................................................CTATGCAGTGGAGTTGAAGAGAATGCCACAGGTGCCTGTGCGCAGCTTGTTTTTGCACATATTGATGAATCTTTTGGTGATGATGCTCCATTGCTTCCATCTGGTTTCTCTGTCATTCCACTGGAGCCTAAATCA.................................................................................................................................................................................................................................................................GATTCTCCTAGTGCTGCTCGGACTTTAGATTTAGCTTCAACTCTTGAAGCTAGAACTGGTGGGACACGGCCAGCTGGTGAAGTTGAAGGAAGCAGTTACAACCATCGTTCAGTCTTGACAATTGCATTCCAGTTTGCCTTTGAGAATCACTATCGAGAAAATGTAACTGCTATGGCTCGCCAATATGTACAAAACATTGTAAGCTCTGTTCACAGAATTGCTATGGCTATTGCACCCTCTCGACTCTGCTCTCAGTTGACACCTAAATCCTTCCCTGGTTCACCACAAGCTGTCACTTTGGCGAGATGGATTTGCAGGAGCTATAA...................................................................................................................................................................................................................................................................................................GAATCATACTGGTGGAGAATTGCTACAGATGGATTCTCTAGCTGCCGGTGATGCTGTTCTGAAGCAACTATGGCATCATACTGATTCAATAATGTGCTGCTCCGCCACAATGAAT.......................................................................................................................GAATCTGCATTTTTTTCATTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595165" ref_strand="+" ref_description="SGN-U595165 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|45479746|gb|AAS66760.1| (e_value=6e-86) PHAVOLUTA-like HD-ZIPIII protein [Nicotiana sylvestris]; (*ATH) AT2G34710.1 (e_value=4e-70) | Symbol: None | homeobox-leucine zipper transcription factor (HB-14), identical to homeodomain transcription factor (ATHB-14)GP:3132474 GB:Y11122 (Arabidopsis thaliana); | chr2:14646402-14651348 REVERSE | Aliases: T29F13.8, T29F13_8; (*SWP) sp|O04291|ATB14_ARATH (e_value=3e-69) Homeobox-leucine zipper protein ATHB-14 OS=Arabidopsis thaliana GN=ATHB-14; ">
      <seq>gcattgtaggctctgttcagagagttgctatggctattgcaccctctcgactctgctctcagttgacacctaaatccttccctggttcaccagaagctgtcactttggcgagatggatttgcaggagctataagaatcatactggtggagaattgctacagatggattctcaagctgccggtgatgctgttctgaagcaactatggcatcatactgattcaataatgtgctgctccgtcaaaatgaatgattctgcatttttttcatttgcaaaccaagcaggacttgacatgcttgaaaccactctaatagctcttcaggatataatgcttgataagatcctagatgaagctggtcgaaaggtcctcctttcagagttccccaagattatgcagcagggctttgcttatctgccagcagggctatgtgtatcgagcatggggaggccagtgtcgtacgagcgagctgttgcatggaaggtccttaatgatgacaactccaatcactgcctagctttcatgttcacaaactggtcttttatttaagttcaaaacatatgatctgcgtaaggcaggctgtgtggcattagctatcgactcgttactagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="57715" stop="59557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58015" g_stop="58147" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58148" i_stop="58438" i_length="291">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58439" g_stop="58553" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="248" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58554" i_stop="58672" i_length="119">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58673" g_stop="58822" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="398" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58823" i_stop="59046" i_length="224">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59047" g_stop="59257" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="609" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-U595165" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58015" e_stop="58147"/>
          <exon e_start="58439" e_stop="58553"/>
          <exon e_start="58673" e_stop="58822"/>
          <exon e_start="59047" e_stop="59257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTGTAGGCTCTGTTCAGAGAGTTGCTATGGCTATTGCACCCTCTCGACTCTGCTCTCAGTTGACACCTAAATCCTTCCCTGGTTCACCAGAAGCTGTCACTTTGGCGAGATGGATTTGCAGGAGCTATAAGTAAGGGTTCTAACTTCTAAGGTCTTTGCAGTAATTCATAGTTATCTGAGTTTTGCACCACCAATTAGCAATTCCTGATTTATGCAGATAAATGTTGTTGTGTGAAGCATAGTATAAATGAAAGGTTCTCAATTCACATCCAAAACTGAGGCCACTCTGATTCATTTGCACCCTTGCATTAACCAATGCCGAACGACTCATCCCTTAACTTGCACCCTGATGTACTCGTGGAACACTTTTAACATTTTTCCCAGTTTCTCTTCCTGGTTTTACTGATTCAATGTATTTCAGGAATCATACTGGTGGAGAATTGCTACAGATGGATTCTCAAGCTGCCGGTGATGCTGTTCTGAAGCAACTATGGCATCATACTGATTCAATAATGTGCTGCTCCGTCAAAATGAATGTCAGTAACATCAGCACATGTTGTTTCGACGCTATGCTTTTCTGATAAGAAAGGTTTCTCCACGATTCCTTTTCAAGGGAAATCTGATGATAGCTAAATGGTTTATCTACTTAATGCAGGATTCTGCATTTTTTTCATTTGCAAACCAAGCAGGACTTGACATGCTTGAAACCACTCTAATAGCTCTTCAGGATATAATGCTTGATAAGATCCTAGATGAAGCTGGTCGAAAGGTCCTCCTTTCAGAGTTCCCCAAGATTATGCAGCAGGTTGGATTACCATCTTACTATGTGAATGTTCTAGAATTCTACATTTAATCAAGTCGGATCATCACACGGAGGTTTATGAACACTTGGAAATATGTTATTCAATACTTAAATGAGTTCTAAACATATGCTGCAATGCGTACCTAACCACTCATGTTTCACAAGACTAGGTTTTATTGATTATTAGCAAACAATTTGGTGATTTCTGATACCCTTTGTGCTTGTAGGGCTTTGCTTATCTGCCAGCAGGGCTATGTGTATCGAGCATGGGGAGGCCAGTGTCGTACGAGCAAGCTGTTGCATGGAAGGTCCTTAATGATGACAACTCCAATCACTGCCTAGCTTTCATGTTCACAAACTGGTCTTTTATTTAAGTTCAAAACATATGATCTGCGTAAGGCAGGCTGTGTGGCATTAGCTATCGACTCGTTACTAGCC</genome_strand>
        <mrna_strand>GCATTGTAGGCTCTGTTCAGAGAGTTGCTATGGCTATTGCACCCTCTCGACTCTGCTCTCAGTTGACACCTAAATCCTTCCCTGGTTCACCAGAAGCTGTCACTTTGGCGAGATGGATTTGCAGGAGCTATAA...................................................................................................................................................................................................................................................................................................GAATCATACTGGTGGAGAATTGCTACAGATGGATTCTCAAGCTGCCGGTGATGCTGTTCTGAAGCAACTATGGCATCATACTGATTCAATAATGTGCTGCTCCGTCAAAATGAAT.......................................................................................................................GATTCTGCATTTTTTTCATTTGCAAACCAAGCAGGACTTGACATGCTTGAAACCACTCTAATAGCTCTTCAGGATATAATGCTTGATAAGATCCTAGATGAAGCTGGTCGAAAGGTCCTCCTTTCAGAGTTCCCCAAGATTATGCAGCAG................................................................................................................................................................................................................................GGCTTTGCTTATCTGCCAGCAGGGCTATGTGTATCGAGCATGGGGAGGCCAGTGTCGTACGAGCGAGCTGTTGCATGGAAGGTCCTTAATGATGACAACTCCAATCACTGCCTAGCTTTCATGTTCACAAACTGGTCTTTTATTTAAGTTCAAAACATATGATCTGCGTAAGGCAGGCTGTGTGGCATTAGCTATCGACTCGTTACTAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569489" ref_strand="+" ref_description="SGN-U569489 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157350439|emb|CAO40419.1| (e_value=6e-42) unnamed; (*ATH) AT3G29130.1 (e_value=8e-39) |; ">
      <seq>atggtttatgcaacatagtttaaccccactgagaaaaaaatggaggaaacagagaaagaatccatcaaatctgcatccgaagagatttccagtgaattcaaaaccctaatcaacgctaaggatttggattctttgaagcaattgcaaaacctcatattgggacggttgcaggacagcaatgcagtcctttctcacttcaatgagtactcagaacattgttacgcagaggtctcggcagatttctctagaaatacacgtctcttaaaatctatgaagtcagaccttgattacatatttctgaagttgaggaacatgaaggcaaaaatcatatcaacgtacccagatgctcttccagacaatacaactattcaggcacttgatcaaaggcctgatcttgaaatgccacaataagtaagtttggtaatgtaaatggtggggaaatgtttggcttcttctatttcttcctttgcaagtatggaaaagctggtttagggtggatagtctcaactgtttttatctgatagttctgcagctgtatacttcaagtcgcgttatgataagttgtggtctctcctgaacagtagttgtgcttcgatttgtgctttgcatataccttttcgggggcaaggcatggatctgtttatcgtaaggattctgagttttcgattaaaactttgattgatgatgacntgaaanagananntttcgttctcgnaatgaaaatgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="61135" stop="65274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61435" g_stop="61589" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61590" i_stop="64205" i_length="2616">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64206" g_stop="64358" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="308" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64359" i_stop="64552" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64553" g_stop="64969" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="724" r_length="416" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-U569489" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61435" e_stop="61589"/>
          <exon e_start="64206" e_stop="64358"/>
          <exon e_start="64553" e_stop="64969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTATGCAACATAGTTTAACCCCACTGAGAAAAAAATGGAGGAAACAGAGAAAGAATCCATCAAATCTGCATCCGAAGAGATTTCCAGTGAATTCAAAACCCTAATCAACGCTAAGGATTTGGATTCTTTGAAGCAATTGCAAAACCTCATGTAATTCTCTTTTTTCTTTTCTCTTGGAACTCATTTGTTGACGGAAACTTTCCTGAGTAATTTCTACTTTAATACTGTTCCCTAGTATGCATTGAATTAAAGGGTCAATTGGGTTTCTTGAATGCTATTTTGTGGAATGTTTGATGTATTTGAAGTTGTATTAACTTTTCATTCTGTTCAGTTCTTAGGGATTGCCTCATCAGGCCCAAGATTGTTTTTTCCTTGATTTAGATAGAGTGATTGGCTTAATATGGTAATTTAGGATACTATATGAGTTGGGTAGTTCCGAAAAAATGTCTGATTGATAAACCAGCCTCCGATCACATAGAAGAGTTCTAGGTGTTGTTGGGAAGGAACTCTAAAATGGCTTTCTTTTTACTTGATTTTAAATTATGGGGTTCCTTTATTTTTGCTGAGTCAAACCAGTTTGGATAATTAAGATAAGAAGTGTTCAGTTTAAGATGGAAATGAGAGGATATGTTGTATGTGATTGACTGATGGATTTGTGTGTCCTCTTTTTTGGAAACCAGAACGTGAATGCATGTATGAGCTCTAATATTAGTTTCATAACTTAGTTGATGTTAGGATTAAATGATGACATTTACTTTTTAGAATTTACTGACTCGCAGAGCCTCGCCTGATAGCCAATATTTTTTGCTTATGTTTAGCTCTCTTTTGTTTTGTTTAGAGCTAAGTTGGTCGGACTCGGGCGCGGATGTAGAGGTTGGATCCTTCATGATCTAATTTTTGAGATTCGGGGATATGGATATGGGTGCAAGGATTCGCCTAAAACTAATTAAAATATCTAACGATAGAGCTATAATACCTAAATTATGAGATACTATATGGAGAACTTGAGGAGAATCCAGGAGATTAAAGGAAAATGAGTGACATAGAAATTCCTATATAAAAAGGTATTCCATTTCTTGAATTTCACCTTAGTTTTTGTATTGGTTAAAGAAACCATTAGAACTGTTTCCTCATCGATTTTGGTCAAAGTACCCAAAATCGGTTGACCAAATCGGACACGGATCCCACACCCATGTCGTGTCGACAGGGGTGAGGCACCAAAAGTGAAGAGTTTGAGCAATTTAGGTTTAGAGTATGCTGTAATGGAGCTTTCCTTTTTTATCTTTTCATCTTCTTGATGCCAGCAATACAACATCTTACTTCTACCAACAAAATCATGTTTGGGTTTCCAAATTCCTTTGGCACTACATCAGTGAATGTGTAGTGGGTGCGGTAGCATTTCCAAAAGTCAAAGTCTCCTTTGTTGCAAAAAAATAACTTATAATAGTTGTTGAGTCTAGTTGTAAATCAATTGTTTTATATGTAAGCAATTAGACCCGGGTATGGCCAATTCTCTCTCCTTCTATGATTAGCCAAGCTGTTAAAATTAGGATTTGGGAGCTGTATAGTGAATTAATGATACCAATCTTTGAATGCACTTAAGAGTTTAGATTGTCTATTGTATCTGATCTAGGTTAAAGATCATCTGGTCCTTATTTTTACATGCCAAAGCTCTTCGTGCATCAAGAGTTTGGATTATGAAAGTGTCTCTTTGAGATATGTTGGCTAACAATTGCCAAGTCTCGGAACATTCGGTACGCATTGTGAGACTACTTTGGGTTTTGTATATTGAACTTGTAAAATTCCCTCTTTGAGTATGTAAAATTTGTTGCAATTACCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATATGTGGCTTAGGTCGCAGGTTCAAGCCCCGCACCACGCAAAGTGAAGCTTGGTATTTAAGTGGAGAAGGGTAGAGGACAGACCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGGTGGGTCACATACGGATTTCTTGGTTATCCAAAAAAAAGAATTGTTCCGATCTATCCATTACAACAACATAAATCATCAAAAAGCTCATATATATCATATGATTGGGGTCTAAACCCCTTAGATCAGAAAGAAAGTTCCATACAGCAGTATCAGAATTTAGCAACCTTGTGATTAAGAATGAGAAAATATATGGGAACCAAAAGATCACCTGCTTAGTGATCTCTTCTAGTGTTCTCATTTGATTGGAGAAATTTCTTTAAGAAATTTCCCTTAAGAAGCTTTATTTCAGTCACTTATCAGGGGAAAAAGAAGAAGAAAAAACGATTCGAGAGAATTTTTGTTAGTGTAAAGTTCACATAAGGAACTCCTAAAAAAGTTGCTTCCTGGAAGATCATAAAGTACCTAATGTCTTGTTTAGGGCTCTGACTTTTGGTTGAGTTTCGGTTGTTTCTCTATGAAGTCACCCATATGCTACATTCAGAACTTGCTCAAAGCGTTTGAAATCATGATTTTTCATCTGAGCACTAATACTGTTATGATTAGAATGTGGTCATAAATATCAGCCCCTTCCTGAACTCTTCGATGCTTCCGCCTCCTTCAAACTTAGCTTTTTCCACCCTTGTGATTGCTTTTTGTCATAATTCTTGGAAGTGTTTTTTTACCATGTGATATATAGGTTCGTTCAGTCATTTTTGTTCATTGTCTTATTGTCATTCTTGGTGCCTTTTTTCATGATTAACTTATGTCTTGTATGCTCAAACTGCAGATTGGGACGGTTGCAGGACAGCAATGCAGTCCTTTCTCACTTCAATGAGTACTCAGAACATTGTTACGCAGAGGTCTCGGCAGATTTCTCTAGAAATACACGTCTCTTAAAATCTATGAAGTCAGACCTTGATTACATATTTCTGAAGTTGAGGTATGATATTTCTTTTCTTCCCTTGTGTTATTCTTTTCTTTCTGAATTTCAATATCAGTTTTCAATATTGTAATGTTACATAGAGATACCCGGGCATTCTTAGACTACTGGCTCTACTCCCAAAATCGGGCAACCTCTTTGTTTAGTGGTTAATCATTTTCTATTACTTCTAAATGTTTGTTTTCCGTTTTCAGGAACATGAAGGCAAAAATCATATCAACGTACCCAGATGCTCTTCCAGACAATACAACTATTCAGGCACTTGATCAAAGGCCTGATCTTGAAATGCCACAATAAGTAAGTTTGGTAATGTAAATGGTGGGGAAATGTTTGGCTTCTTCTATTTCTTCCTTTGCAAGTATGGAAAAGCTGGTTTAGGGTGGATAGTCTCAACTGTTTTTATCTGATAGTTCTGCAGCTGTATACTTCAAGTCGCGTTATGATAAGTTGTGGTCTCTCCTGAACAGTAGTTGTGCTTCGATTTGTGCTTTGCATATACCTTTTCGGGGGCAAGGCATGGATCTGTTTATCGTAAGGATTCTGAGTTTTCGATTAAAACTTTGATTGATGATGACATGAAAGAGAAGATATTTCGTTCTCGGAATGAAAAT</genome_strand>
        <mrna_strand>ATGGTTTATGCAACATAGTTTAACCCCACTGAGAAAAAAATGGAGGAAACAGAGAAAGAATCCATCAAATCTGCATCCGAAGAGATTTCCAGTGAATTCAAAACCCTAATCAACGCTAAGGATTTGGATTCTTTGAAGCAATTGCAAAACCTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGACGGTTGCAGGACAGCAATGCAGTCCTTTCTCACTTCAATGAGTACTCAGAACATTGTTACGCAGAGGTCTCGGCAGATTTCTCTAGAAATACACGTCTCTTAAAATCTATGAAGTCAGACCTTGATTACATATTTCTGAAGTTGAG..................................................................................................................................................................................................GAACATGAAGGCAAAAATCATATCAACGTACCCAGATGCTCTTCCAGACAATACAACTATTCAGGCACTTGATCAAAGGCCTGATCTTGAAATGCCACAATAAGTAAGTTTGGTAATGTAAATGGTGGGGAAATGTTTGGCTTCTTCTATTTCTTCCTTTGCAAGTATGGAAAAGCTGGTTTAGGGTGGATAGTCTCAACTGTTTTTATCTGATAGTTCTGCAGCTGTATACTTCAAGTCGCGTTATGATAAGTTGTGGTCTCTCCTGAACAGTAGTTGTGCTTCGATTTGTGCTTTGCATATACCTTTTCGGGGGCAAGGCATGGATCTGTTTATCGTAAGGATTCTGAGTTTTCGATTAAAACTTTGATTGATGATGACNTGAAANAG-ANANNTTTCGTTCTCGNAATGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582565" ref_strand="+" ref_description="SGN-U582565 Tomato 200607#2 [46 ESTs aligned] (*GB) gi|4190952|dbj|BAA74434.1| (e_value=0) similar to hsr203J [Lycopersicon esculentum]; (*ATH) AT5G06570.1 (e_value=2e-44) | Symbol: None | expressed protein, similar to PrMC3 (Pinus radiata) GI:5487873 | chr5:2007991-2011042 REVERSE | Aliases: F15M7.10, F15M7_10; (*SWP) sp|Q940G6|GI1L3_ARATH (e_value=5e-34) Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3; ">
      <seq>ggcgattggcggccaatcggccgaattgagatacccaagaaaaaataaaatttttcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagttaaagatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcgaagcaaatcggagctagaacaggaacaaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaggatcacccgatcacttgtccgatgggtgatgcggcaccggcggtggaggagctgaaattgccgccttacttgtactgtgtagcggagaaggatctgataaaagacactgaaatggaattttacgaatcactgaaaacaggggaaaaagatgttgaactgttgattaacaatggcgtgggacacagtttttacctgaacaaaattgctgttgatatggaccctgttactggttctgcaactgaaaagctttttgaagccattgcagagttcatcaacaagcactgatcaaatgagaaattaatttactataagatttatgagtgcaaataagcatgatattttatgagaatttttttgcatgctgaacatctgaaacgattgtatttatgtttgttttgatgattgttattttaactatatcgtatccaattataaaatattaaaatttcataataatcgatatgatcggactacaactttatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89360" stop="91255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89662" g_stop="90955" g_length="1294"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="1303" r_length="1274" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-U582565" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>1294</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89662" e_stop="90955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAAAGATGTTGAACTGTTGATTAACAATGGCGTGGGACACAGTTTTTACCTGAACAAAATTGCTGTTGATATGGACCCTGTTACTGGTTCTGCAACTGAAAAGCTTTTTGAAGCCATTGCAGAGTTCATCAACAAGCACTGATCAAATGAGAAATTAATTTACTATAAGATTTATGAGTGCAAATAAGCATGATATTTTATGAGAATTTTTTTGCATGCTGAACATCTGAAACGATTGTATCGTATTGTTAGTTTAAATATTCATGTTTGTTTTGATGATTGTTATTTTAACTATATTGTATCCAATTATAAAATATTAAAATTTCATAATAATCGATATGATCGGACTACATCTTTATCAT</genome_strand>
        <mrna_strand>GATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAAAGATGTTGAACTGTTGATTAACAATGGCGTGGGACACAGTTTTTACCTGAACAAAATTGCTGTTGATATGGACCCTGTTACTGGTTCTGCAACTGAAAAGCTTTTTGAAGCCATTGCAGAGTTCATCAACAAGCACTGATCAAATGAGAAATTAATTTACTATAAGATTTATGAGTGCAAATAAGCATGATATTTTATGAGAATTTTTTTGCATGCTGAACATCTG--A--A----A-CG-A---TT-G--T--AT-TT-ATGTTTGTTTTGATGATTGTTATTTTAACTATATCGTATCCAATTATAAAATATTAAAATTTCATAATAATCGATATGATCGGACTACAACTTTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585227" ref_strand="+" ref_description="SGN-U585227 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157350437|emb|CAO40417.1| (e_value=1e-75) unnamed; (*ATH) AT1G30480.1 (e_value=4e-66)  Symbol: None | DNA-damage-repair/toleration protein, chloroplast (DRT111), nearly identical to SP:P42698 DNA-damage-repair/toleration protein DRT111, chloroplast precursor {Arabidopsis thaliana}; contains Pfam profiles PF01585: G-patch domain, PF000... ; (*SWP) sp|P42698|DR111_ARATH (e_value=4e-65) DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana GN=DRT111; ">
      <seq>atcttcatttggtcaatttagaatctccgatcgctttccgttacaatgctcggcggcttatacggcgatctccctccgccgtcgtcctccggcgacgatgacaagccaaccaacgccaccacagctaatgtgtggtccagcagtgctaagatggctccttcagcccttcgcaaacccttcgccccaccccaaacacttcttcgacctcagccgaagcccaaaccgcagccttcagcagctccaaaacctaatccatcgatccctcttgacgagaacactaatccaaatcccacctttgcaacgacgtcgtttcaaccagccctggtggctgttaccagcagtgtattagaagaatacgacccggctcggccgaatgattacgaagattatcggagggagaagaagaggaagcaaatggaggctgaggtgcggagagagttggaagaaagagagagaaaggagagggagcgagagagggaggaaaaggagaagagagaaaaagagagagaattgaatatttcaggtgaggaggcatggaggcggagggcggcaatgagtggaggtggtggaggaggaggcagtgctcccccacgctcgccttcgccaccatcagggaatgagtttagtattgggaggtcagagagtgggggttttgggattgggagcggaaggaaagatgacagctgcacaaaggatgatggctaagatgggttggaaggagggtcagggacttggaaagctggagcagggaattacgactccattgatggctaagaagactgataagagaggtggggttatagtggctagtggcagcagcagcagcaacagcaacaacaacaacaacaacaacaacaggcacctgaaaagaaggttaagagtgtcaatttcaatatgcctccaacaagggtcgtgctgcttaggaatatggttggtcctggcgaggttgatgatgacctagaaggtgaggtggctgaagagtgctctaagtttggtactgtaactcgtgtcttaatatttgagattacagaaacaaatttccctcatgaagaagctgttcggatattcgttcaatttgagagagcagaacacgcaactaaagcccttatagaacttgaaggtcgattttttggcggtaggattgttcatgcctgtttctacgacgaggagaggtttggcaataacgaattagctcccatgccaggagaaattcctggcttttgaccaaacagttattgtccaaatgtaacttctctttattttttaaccgggactgtaattttgcaagcttgtttagcgtgccttacgtgatacatctccttgtacctatcgtctcaagtttacacaaagctatgtatcgaaaaacttgacattattactctgagggaaattggtttgggtcctagttttcgttgtaatgcaagatattagagaattattgttttaccgttggttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="96443" stop="91812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96143" g_stop="95211" g_length="933"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="930" r_length="930" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95210" i_stop="92640" i_length="2571">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92639" g_stop="92111" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="931" r_stop="1457" r_length="527" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-U585227" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1462</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96143" e_stop="95211"/>
          <exon e_start="92639" e_stop="92111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCATTTGGTCAATTTAGAATCTCCGATCGCTTTCCGTTACAATGCTCGGCGGCTTATACGGCGATCTCCCTCCGCCGTCGTCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTTGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAATTGAATATTTCAGGTGAGGAGGCATGGAGGCGGAGGGCGGCAATGAGTGGAGGTGGTGGAGGAGGAGGCAGTGCTCCCCCACGCTCGCCTTCGCCACCATCAGGGAATGAGTTTAGTATTGGGAGGTCAGAGAGTGGGGG-TTTGGGATTGGGAGCGGAAGGAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGTTGGAAGGAGGGTCAGGGACTTGGAAAGCTGGAGCAGGGAATTACGACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGTGGGGTTATAGTGGCTAGTGAAGCAAAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAACAACAACAGGCACCTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATGGTATGGATTGTTAAGATATTCTGTCAACTTATTTATTTGTTCTGCTTGCTTGGGGAGTTCTACTCTATGAGCTTGTTTAGCTGCATAAATTATGATGATTTCTTGCTAGAATAGTATCTTTCATATAGTTAAGTCGCTCAGGAATATGATATGGATTTTTATGATGTTCTATTGACTTACTTATTTGCTCTGTTTGATTTGGGATTTTTATTATATGAGCTTTTTTAGCTGTACAAATTATGATGGTTTCTTGCTAGAATAGTTTCTTTCATATGAGTTAATTTGGTTTCAGTCGTTTGAACTTTGGCTTAGTCTTACACTTAGTGCAAGTAGTTTCCAGGGGCTCAGCTGTGTTTTGAATCAGAGTTGTTTACGCTGAGGAAATTTGAAGTAGAAAAACTTTCGTCCTTTAGTGATTTCTGACCAACACACCCGTCAATTTGCTTTTATTTTTGGCCCGTAAAAGTGAAGTGCTCAGCCATGCCATTGAGAATAGTCTTTTAAATTTGGCTTCCACCTAATAAAATTGTTCACCTCATTGAGAAAAAGAAGAATTTGGCTTCCACCTTAATCTATCTTAGTAGCTTAGTTGTTTGACTACCTGAACTTTCACCTTGTTGGTGAGGGTTGGATTCCCCACCTTGTAATCCCCTTCCTCATTTCCCCTTTCCCTACCCCATTTTTTATTTTCCATTTTTTAAAAAAAAGCTATCTTTCTAATATAGCAGAGAAGAGAATTACCATTCTGCCTTTGTTATCAGAAACAAGTTTCTGATTGGTTATCTATATGAGCTCATTTAAGGTCAAATATTTGGTAGTGAGTGTTTCTGATTGTTTATTTATTAGATGATGGGTGTTAAGACTGTTAACGTTTCATTGTTGAATTTGTGTTTCTAGAGGCAGTCATGTAGTTTAATCATGTGAAAAGGTATTATGTATAATTGGCTATTGAATTGTTCATTCTTCTGACATTTGTTAGGTCTTGAGAGACAGTGTGCTACTCGTATACTTTGACAAGTTATTTAATTGTGGTAGCTAATGTACTAAGATTCACTCACAAATCCTTTTTCTTTATAAGGTTCACTGACTGGTCTTTATATAGTATACTGAACCTGTTCAACAGATTTATCTATGTGAACTTTTTAACCTTTTATTATGCGATCTATAGGTTCTTTTTTAAAAAAGGATAAAGGACCAATTAGTCTTAACCCTTATGTTTTATTTCATTAATTTGTGCCTACCAAACTATTTTGGGGTCTAACAATAAGTACTACTGGTTTCTAAGGAAAATGAGAACTATTGAGTATTAGTATAATTTTTTATCAATCTTTAATGATTGCCTGATAAGTTAAATACTAAAGTAGCTAATTAGAACATTATCCACTTCTGTCTATCATTTTCTGTTGGCATTGGCTACTTAAAACATCTCCTCAGAAATTTGTCTGTGCATTTGCTGACTGCTTTCACATTACACTAAGGGGAATCAACTTTCTCTAGATATAGGGGAAAAAAAGTACCTCTTTTCCCCTTTAAGGTCTCGTGTGCTGGTGATTACCAATATCTTCATAAATGAGGGTACAACCCTTGATTAGCTTCTATTCTTGTGATTCTAAGTATTTCTCCACTCACTCTAGGGTTTGTAATATGGTTAATTGCTCTGCTCAGCGGGGAAGTCACTTTTAGTGAATGAACCAAGGGGTTAGCTTTTACTCAAACTTCTCTAGCTTGTATGGGTCTTTGGACAAGGATATACACGCATAGATACCTTTGGATTATAGATGGTATTACAATGCGGAGGAAGTAGAGATTCATTTAGGAAGGATTGTAATGCTGGTTCATGGTGAATTTGGTTGCAGTTAAAGTGAACTATATCTGAAGAATTGTTGATGGATTGGATATATGTATTCTTTGTTTGATTAATGAGGTTTAAGTTGTATAAAGCTATGAAATACAACTTTAAAGTAATTCGACCAAATTTAGTTAAAGAATTATTTGGAATGATGGGAAGATGGACTAGGGTGGTGGAGCGCATGCTTTATGGTGAACTGGCAATAAGGTGGAGGTTTGGAACTAAGAGCGCATTAGGTTACACATCATTTGGAATTAAATGTTTCGCTTATAAGAGAGTTAATGGCAGACTGCTGCATTGCTTTGTGTGTGTATTATATTCTTTTCTGGATCTCCTGGTTTTTACTGAAACATTTTGGATCAAATATAGTTTTGCCATTAATGAAAAGTGGGGCTTGCATGAGGTTACACTTTTCCAAGAGCTTCACATCTGCAATATTGAACTCTTTCCTGTAGTGAATGGCTTTGTGGGGGGGGGGGGGGGGGGTGTCCAAGTTATAGAGTAGACCCAAAAACAACATATGAGGTAAGATGTACGCAGACCTTACCCTACCTTTGTGGAGTAGAGATGTTTCCGATAGACCCTCTGCCAAAAAAAGAGAAGTTATTCAGTGAAGGGAACTGATGCACCATCTGTAGGGATATAATACACGAACAAATCTTTTAACGCGTTTTTTTTTATGATCTGACCTATCTTTTGTTCCTATTTTCCTTCTTTTGAAGGTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATTGTCCAAATGTAACTTCTCTTTATTTTTTAACCGGGACTGTAATTTTGCAAGCTTGTTTAGCGTGCCTTACGTGATACATCTCCTTGTACCTATCGTCTCAAGTTTACACAAAGCTATGTATCGAAAAACTTCACATTATTACTCTTGAGGGAAATTGGTTTGGGTCCTTAGTTTTCATTGTAATGCAAGATATTAGAGAATTATTGTTTTACCGTTGGTTCA</genome_strand>
        <mrna_strand>ATCTTCATTTGGTCAATTTAGAATCTCCGATCGCTTTCCGTTACAATGCTCGGCGGCTTATACGGCGATCTCCCTCCGCCGTCGTCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTTGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAATTGAATATTTCAGGTGAGGAGGCATGGAGGCGGAGGGCGGCAATGAGTGGAGGTGGTGGAGGAGGAGGCAGTGCTCCCCCACGCTCGCCTTCGCCACCATCAGGGAATGAGTTTAGTATTGGGAGGTCAGAGAGTGGGGGTTTTGGGATTGGGAGCGGAAGGAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGTTGGAAGGAGGGTCAGGGACTTGGAAAGCTGGAGCAGGGAATTACGACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGTGGGGTTATAGTGGCTAGTG--GC--AGCAGCAGCAGCAACAGCAACAACAACAACAACAACAACAACAGGCACCTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATTGTCCAAATGTAACTTCTCTTTATTTTTTAACCGGGACTGTAATTTTGCAAGCTTGTTTAGCGTGCCTTACGTGATACATCTCCTTGTACCTATCGTCTCAAGTTTACACAAAGCTATGTATCGAAAAACTTGACATTATTACTC-TGAGGGAAATTGGTTTGGGTCC-TAGTTTTCGTTGTAATGCAAGATATTAGAGAATTATTGTTTTACCGTTGGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582658" ref_strand="+" ref_description="SGN-U582658 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>ttttttttgacaaaatatgagatgatataaaacgaagatcctttcaatgtgtacagcaacacaactccctttggcagtttggacacatctagaggcagttgtgtgttagtaataaaagtatgatctactgaatcacctgcactaaaggcctttaataagtgagaggaaagagagagcattctttacctatgagttgaggaaagaatcatctgtggctaaatcgacttttaagcccagtaatatacatcaggctccaaaaccacatattagtcccagccgatagcaagcgctgagactctcatcagtgcaccagaccaatagcaaaagtgccaggttttttctcccgcaactgcacctcgagaattcacagtggttccacacttcactttttggtttctccactagatgatcccaccgttccagcagggggcttctccacactacttgaactagcattgctagcgctttggctgccacctgattctggaggctgtgaggtatcacctgatgatccttctttcacattactggtgcacacattagtgggtggaatatgagcattttcttcttatgaccgagtagtatcctttggagcttctgattcctttttgacgtcgccattaggtaaaggaggcccgaccacatcagcaacaccagctgaatccgaggtttgattggatgttgcaattgtattagagttttctcgccattcaacccattcaggaggcttaatggtttcattacttgtagcacgatgcaagtcctcagacaaactagagggtgcaggatgatcagaactttgttttggctcaggtcgatcagatgaggcagtgtctgccaaatcatcatcttcatcagcagctgcatcatcatttgtcctgggcctaataatattagtttcacctgacacagaagaaactaatatcatttgtcccggcaagaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="97246" stop="98744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97539" g_stop="98450" g_length="912"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="912" r_length="912" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-U582658" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97539" e_stop="98450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAATGACAAAATATGAGATGATATAAAACGAAGATCCTTTCAATGTGTACAGCAACACAACTCCCTTTGGCAGTTTGGACACATCTAGAGGCAGTTGTGTGTTAGTAATAAAAGTATGATCTACTGAATCACCTGCACTAAAGGCCTTTAATAAGTGAGAGGAAAGAGAGAGCATTCTTTACCTATGAGTTGAGGAAAGAATCATCTGTGGCTAAATCGACTTTTAAGCCCAGTAATATACATCAGGCTCCAAAACCACATATTAGTCCCAGCCGATAGCAAGCGCTGAGACTCTCATCAGTGCACCAGACCAATAGCAAAAGTGCCAGGTTTTTTCTCCCGCAACTGCACCTCGAGAATTCACAGTGGTTCCACACTTCACTTTTTGGTTTCTCCACTAGATGATCCCACCGTTCCAGCAGGGGGCTTCTCCACACTACTTGAACTAGCATTGCTAGCGCTTTGGCTGCCACCTGATTCTGGAGGCTGTGAGGTATCACCTGATGATCCTTCTTTCACATTACTGGTGCACACATTAGTGGGTGGAATATGAGCATTTTCTTCTTTTGACCGAGTAGTATCCTTTGGAGCTTCTGATTCCTTTTTGACGTCGCCATTAGGTAAAGGAGGCCCGACCACATCAGCAACACCAGCTGAATCCGAGGTTTGATTGGATGTTGCAATTGTATTAGAGTTTTCTCGCCATTCAACCCATTCAGGAGGCTTAATGGTTTCATTACTTGTAGCACGATGCAAGTCCTCAGACAAACTAGAGGGTGCAGGATGATCAGAACTTTGTTTTGGCTCAGGTTGATCAGATGAGGCAGTGTCTGCCAAATCATCATCTTCATCAGCAGCTGCATCATCATTTGTGCTGGGCCTAATAATATTAGTTTCTTCTGTGTCAG</genome_strand>
        <mrna_strand>TTTTTTTTGACAAAATATGAGATGATATAAAACGAAGATCCTTTCAATGTGTACAGCAACACAACTCCCTTTGGCAGTTTGGACACATCTAGAGGCAGTTGTGTGTTAGTAATAAAAGTATGATCTACTGAATCACCTGCACTAAAGGCCTTTAATAAGTGAGAGGAAAGAGAGAGCATTCTTTACCTATGAGTTGAGGAAAGAATCATCTGTGGCTAAATCGACTTTTAAGCCCAGTAATATACATCAGGCTCCAAAACCACATATTAGTCCCAGCCGATAGCAAGCGCTGAGACTCTCATCAGTGCACCAGACCAATAGCAAAAGTGCCAGGTTTTTTCTCCCGCAACTGCACCTCGAGAATTCACAGTGGTTCCACACTTCACTTTTTGGTTTCTCCACTAGATGATCCCACCGTTCCAGCAGGGGGCTTCTCCACACTACTTGAACTAGCATTGCTAGCGCTTTGGCTGCCACCTGATTCTGGAGGCTGTGAGGTATCACCTGATGATCCTTCTTTCACATTACTGGTGCACACATTAGTGGGTGGAATATGAGCATTTTCTTCTTATGACCGAGTAGTATCCTTTGGAGCTTCTGATTCCTTTTTGACGTCGCCATTAGGTAAAGGAGGCCCGACCACATCAGCAACACCAGCTGAATCCGAGGTTTGATTGGATGTTGCAATTGTATTAGAGTTTTCTCGCCATTCAACCCATTCAGGAGGCTTAATGGTTTCATTACTTGTAGCACGATGCAAGTCCTCAGACAAACTAGAGGGTGCAGGATGATCAGAACTTTGTTTTGGCTCAGGTCGATCAGATGAGGCAGTGTCTGCCAAATCATCATCTTCATCAGCAGCTGCATCATCATTTGTCCTGGGCCTAATAATATTAGTTTCACCTGACACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599805" ref_strand="+" ref_description="SGN-U599805 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcaataataccttctttcaggaggcctcaggcagtggacatttttcttgttaattactctctccatctcaatttatgtggcggtgtttgagaccacaagtttcaaaagcctttctttctttcttgcctcacataaattgggagaagtatataaagatgtcattctttttggaactgactaaaaaggaatgagtgtcacatagtttaggaaaaagggagtaccatgtttcatgatatataacaaattgtgggccttgaatgtctcatttattctgtaaaaagcattttgagtttcctagccgaattcctctaatgatatttaccttaccttacaagaaattcttgccgcgattgaaggagagaatcatgcccagatttgactgttcctcacttttgatcgtttgtgtaaattttataaaagtacgccattttttcatttgagttggacacaacattttgaagaaaatataatcattacatcctttctaataccaatgggatattttcatcttttcattggattgatcatgattgtagtttgttagtctttataccagcataatattgacttttatttcatgtaacctctctcaggagacccacatcactgcatgaccgaatgagggacagtgatgatgatgattatcaagatagagactatgatgttgcagctctggcaaataacttaagccaggccttccgctatggaatctataacaacgatgaacttgatgaggctcgtggttcacttgagcgggatgatgaggatgtctatcntgatgatgagtctgctgaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="102681" stop="98365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102383" g_stop="102300" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102299" i_stop="102019" i_length="281">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102018" g_stop="101356" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="735" r_length="651" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101355" i_stop="100441" i_length="915">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100440" g_stop="100411" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="765" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100410" i_stop="98699" i_length="1712">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98698" g_stop="98665" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="799" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-U599805" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102383" e_stop="102300"/>
          <exon e_start="102018" e_stop="101356"/>
          <exon e_start="100440" e_stop="100411"/>
          <exon e_start="98698" e_stop="98665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGTGTTTGATTGGGCACAAAGTTTAAGAAAGAATGAATTTTGAAACTTGTGGTCTTGAACAAGCCGTAGATATTTGTATCATTAAAAATCTTCTCATTAAGGGTAGAATGGGAAGTATAAAATTCATTTGTTACTCCCTCTGTCCCGATTTATGTGGCAAACTTTCCTTTTTAGCCTGTCCCAAAAGGAATGATACATATCTATATTTAGTACAATTAAACTTTTTAAAATGTCTATGTTACCCTTAGTGAGATGATTTATAGCCACACCAACATCTATGGCTTGTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATTGGGATGCAGAAAGTACGAAATATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGTATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAGGTGTTCTTCATATCCCTTAACAAAAGACAACATGATTGTGCATTTCTTGATCTCTCTCTATCTTTTAGCATTTAATAGTGCTGGCTAGGTTCCTGTGTTTATATCTGGAGAAGGTAATGACAGAAGGTTTGGAACATTGATAGGTAGTTGGAGAATTTATCTTTCTTATATTTAGAGTAGTTCTTTCTTAGAGCTGCATGCTATGTATAATCTTTAGAGATGAAGTAAAATGAGCACAGTAAATGTGCTTTTTGATTCATATTAAGTGCCCACACCTTTTTGCATATCTAATTATTTATAATTGAATTTGAAGTGTGGTTTTGATTTTTATCTGCAAGTCCCAATCACAGGAATGTTGTTCAGAATCGGTGGTTGAATTTTTGACTGTAAAAAGCCTCTGCTGAAAATGGTATAAGATCCATAATTCAATATAGATGTAGCAGGGTTAGACAGAGGGTCCGGGAATCTGTGCCAGCCTCTTGTAACTGTTATATGGTCATGGTATAACAGCCTAGATGTAGTAGGTTAAGACAGAAACCAGTGAGAGCTAGAATGAATTTTATTCTGTTAATAGCATCTTCCTAATTCTGTCATAATTAGGAATGTTGGTATTTAGTGATCTTCCTTATTAAATGACTTTCATTTTAAGTTTAAAGAAACCTTATCTCAAGTAGCCTAAACTATGGAGCACTCTGTAGATTGTCTGCAAGCAATTCAATACAAGTTATATCTTAAAGTGCCAAAACAATGGATGCTTGATTTTGCTTTTTTTTTTTCCTTTCCTGGTTTTTCTTGTTTTGAACCTTTTTTTGTTCAACTTCATCTTTAATCTTCACATATCAATTTTTTAAGCACATGGTCATTAAGTGTATAATCATTAAAAATGTACTAAAGGAAGACTTTATCTGCGTGCAGGCTCGTGGTTCACTTGAGCGGGATGATGAGGTAACTGTTGAGGTTTTATTTAGTCCTTCAGTGATTACTTAGTTAATGAGATATACGAACTGTCTGCTACCGTACTTCTATATGCTGTTTCTGCATATGCTCTAGTGAGAGGGTACAGGGCGTACTTTCTCTCCCTCACCTCCACTTTTCATTCACAGCCATGAAGTGCGTCTTCATATAGCGGGAAGATATTTAGAGGAGGTGCAACTAATTTGTTACTAAGGCATAGTCAATTGTATTGATTGATTGATATCATTCTTCATAATGATGATCATTAGAGAAAGTTGAGTCGATTTGTAAGGCAGACCACCTCTGTTCCACCTTCAATACTGATCATCCCTTTAATTCAATGTGGCTGACAGGAACTTCTTTTTGGTCATTAGCAATACTTCCAACAACTCCCTCCGTCCGGATCTTGTCACATTTCCTTTTTCGAGGGTCAAACTTCATAAACCTTATCCAACATTCTAAGATGTATTTTCCACCGTATTGATATTAGAAAAAATGCAACTTATAGTACTTTTCATATAGTTTATGAATCGATAAGTTTTACTCTTAAAATATTAAATTAATCTAATTCAATTTAGCTCCGAAGATTAGTCACTCTAGAAAACGATACTTGACAAGTACTTTGGGACAGAGGGAGTAGTTCTGAAGTCACCTATTAGCTTATCAAAATACCCACATTGCCCTTAGCTTTTGATTGCTTTAAAGCCAGTTAGTTATCTGTGCATATTTAGTTTATTATTTTATTAATTAAATAAACATGTCATTTGTGATGGAAGAATGAAGCGATATAATATTGCATGTAGGAATATCTAACGGAATTTTCTTGCTAGCTGTATGTCCACCTTGTCATATCTTATAATATATATATCTCAAAGAAGTAGGCTCTACAAATGACTTTAAAGTTTAAAGGGTAATCTCATACAAACTGTTATACCCTTTAACCTTGAGTTTGGAGCATTTATAGATATCTTGTTAAAATTCTCATAGAGGGTATGTATAACAGTTCTGAGATAATGGTCGATTTTATAACTCACTTGTGTGCTTTCTCCTTAAGAAATTTCAAAAGCATTTTTCCAACTTAATTTTTTCTTTTGGAAATCCTCCTATTTAGTATTAATTATGTTGTCATGACCAATGTCACTAAGGCTCACATGGAAAAACCCTCTTAAGCCTAAAGCTTGGTGAAGCGCAGGTTGGGTGTTTTGGCTAAGCTTAGATGACCTTTTAGTGCAGTCACCAAGGTTCTAGGACCTATGCTTTATCACCATGGCTCTGGCTTTAGGAGGACCATACTAGAAAGTAAATATAGTTCGTGAAGTAGTAGATTGATTGCTAATAGAACATTATGAATGGAGTTCGAGTGATTACAACTAGAAATTAGTAAAATTTGGTATAAATACCTAGTCACTAAAACTTGGCACTGCATCCCTACATCTAAATCAGAACTTCAAATTTATGTTTGAACTCAGTGACATGATTTTTGCTTCATATATTTAATTTTAATCTTTCAATTCCTTAATCCAGATAATTGGTGTGTTTACATTTATTTTTTCTTCATTAGTGCTCTCTTCTCTGGACCTATTTGTGCTTTGCGCTCAAGTCTTAGTAGTCATGACGTTGCTTTACGCTTTTTGCCTGTGGCGATGCACAACTTGTGCCTCTTCAGGCAACTCATTTACACTAACTCTTCTGATTTTCTGTAGGATGTCTATTTTGATGATGAGTCTGCTGAAGTTG</genome_strand>
        <mrna_strand>GCAATAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGT.........................................................................................................................................................................................................................................................................................GTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATT-GG--G-AG-AAGT-------ATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGGATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTGGTTCACTTGAGCGGGATGATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCTATCNTGATGATGAGTCTGCTGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569008" ref_strand="+" ref_description="SGN-U569008 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157350435|emb|CAO40415.1| (e_value=2e-74) unnamed; (*ATH) AT1G30470.1 (e_value=5e-68)  Symbol: None | SIT4 phosphatase-associated family protein, contains similarity to copper chaperone homolog CCH GB:AAF15286 GI:6525011 from (Glycine max); contains Pfam profile PF04499: SIT4 phosphatase-associated protein | chr1:10779153-10786648 FOR... ; (*SWP) sp|Q8R3Q2|SAPS2_MOUSE (e_value=1e-24) SAPS domain family member 2 OS=Mus musculus GN=Saps2; ">
      <seq>ggcttcttttttcttctcaaaggtccccaaaaaatacagcaaggaaaaaaaatgcttctttccaccgtctcacaattggtgctaagtataattcttgataacaattgaaccgaatccaatcttatcaaagactgctccccacctttttctagggcttcctgggttcaagatcattgttggggttgttttctttttgttcctagatccaaattgttgaaaattctcttctgggtcggttcttgattctgaaaaaatggctatgttttggcgtatggctggcctctccactgcttctccagtggagacaattttggataaggaaaattttgcactggatgagctcttggacgaggatgaaataattcaagaatgtaaagctcttaatggacgccttattaactttctgcgagaaagagctcaagttgaacaacttgtcaggtacatagtggaagaggctccagaagatgcagagaagaaacgaacttttaagtttccttttattgcttgtgaaatctttacatgcgaggtggacataattcttaaagcattggttgagaatgaggagctaatgaacctgctattctcattttttggaacctgagcacacacatagtactctgttggccggttacttcagcaaggttgtcatatgcttgttgctgcggaaaacatcagcttttatgaactacgtacaagctcatcaagatattatcaagaagttggttgatctcattggaattacatccatcatggangtgttaatccgcctaattggcaccgatgaanatttgtatagcaacttctcgganaacatgcagnggntnggaananacaaatgngct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="118517" stop="111095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118217" g_stop="117920" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117919" i_stop="114540" i_length="3380">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114539" g_stop="114436" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="402" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114435" i_stop="113065" i_length="1371">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113064" g_stop="112978" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="489" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112977" i_stop="112835" i_length="143">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112834" g_stop="112759" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="565" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112758" i_stop="112651" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112650" g_stop="112576" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="641" r_length="76" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112575" i_stop="112099" i_length="477">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112098" g_stop="112045" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="695" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112044" i_stop="111625" i_length="420">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111624" g_stop="111565" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="755" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="111564" i_stop="111481" i_length="84">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.354" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111480" g_stop="111395" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="842" r_length="87" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-U569008" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118217" e_stop="117920"/>
          <exon e_start="114539" e_stop="114436"/>
          <exon e_start="113064" e_stop="112978"/>
          <exon e_start="112834" e_stop="112759"/>
          <exon e_start="112650" e_stop="112576"/>
          <exon e_start="112098" e_stop="112045"/>
          <exon e_start="111624" e_stop="111565"/>
          <exon e_start="111480" e_stop="111395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTTTTTTCTTCTCAAAGGTCCCCAAAAAATACAGCAAGGAAAAAAAATGCTTCTTTCCACCGTCTCACAATTGGTGCTAAGTATAATTCTTGATAACAATTGAACCGAATCCAATCTTATCAAAGACTGCTCCCCACCTTTTTCTAGGGCTTCCTGGGTTCAAGATCATTGTTGGGGTTGTTTTCTTTTTGTTCCTAGATCCAAATTGTTGAAAATTCTCTTCTGGGTCGGTTCTTGATTCTGAAAAAATGGCTATGTTTTGGCGTATGGCTGGCCTCTCCACTGCTTCTCCAGTAACCCCTTTTATTCCCTGACTCATATTTTTATACTTTTTTGTGAAAGTTTATGTACGATTTGAATGTTTGGGGTGCTATATCATCTAGTGTTTATTTATTGGAATTGTATTGGGTGGTTTGTTTTTTAAGAATTTTGATTAATGCAAATGGGTTTTTGTTGAATTTCTTGTTATGCATGTTGTTTTGTGTTTTAGCAGTCTTAATTTTGAATTCAGAATTGTGTAAGGGAAGATTGGTAATGTGATTGTTCTGGACTTTTATAGTGGGGAGTACTTTTTTGGACTGAATTTCTAGTGGAAGTTAATGTTTTGGGGGTCTGGTGTTTACTTCTTATATTCAGATTGTCTTAATTATGCAACTCAAAGAGACTGAGTGTTAAATTCCTTATTGAAAGAGGGTAAAATGAAGAGAGTTGAGTGTTAGATGGACTTGGATGATGGTGGCATTTTTAAAGATATTTTTTGGGTTAATTTTTAGAGCAATGGAACAGTGGCAGAGGAGAAGTTTATGATGGACTGGTGGGCCTTATGATTGGATCTAATTTCTTGAACAAATAGCTGTGGTTTGATGAATTATACATCTTTATAACTGCTAATTGAAGAAAATAGTACCAATGAAGTTCCTGTCTATTAGGTCCTCAATGTTGAACCGCAATTCTACTTTGTGCAGCATTGTGGAATTTTTCGAGGAATGTACTTTTTGTAACTTGCTTTTTGTCTGAACTAAGTGCTAGATTATGTTGCAAATTTTAAGCTATTCTGCTTTCTAGATTGACATCAACGAAGTAAATGATATCTCTTGGTAAAATTATGTTCTTCCCAATGCACTATTTCACTTCAATTCTTATGCCACATACTTGGGCAATGTACCTTTTGCCCATACTAGACACCTTTTCTAAGCATGCCCCGGTAGCCTTTCATTTGGAATTTGTTGTTTTTATGGAATTTAGAGGAGCTGATCCGGGGAATGGAAATCCATTTCTTTGTACCACATACATAGGCCATTTCAAGTCCTATGCCATATACTTGGGCAATTTACCCTTTTCCCATCCTAGACACCTTTTCTAAGCATCTCCAGATAGCCTTTCATTAAGAAGTTGGTTGTTTTTATGGAAGTTAGAGGAGCAGATTCCAGGAATGGAAGTCCATTTGATCGTGCTCTGAAACTTTAAGCCATATAATTGTACTAAATAGGTACAATATATATTTTTCCCCTTTACCCAAGAGAATTCCCTGAGGATCAGTGGCGCACAGTTAGAAACTTGGTGGATAACCCCCTTCTTTTTTACACTTAATACCAGACTTTTGTCTCTAGAGGGTTCAAAACTTGTTATGTGTGCCTAAACCACACATAAAATATAACACCGATAGTATAAGATATCTAACACCTATTTGTTGACTCAATTGTTTGCTAGCTTATTTAATGGGCTAACTTGATAAAGGCTTAACTAATTGAATAATGATGTGACACAATGGCTATGAGTTTTTTTTTGGGGGGGGGGGGGTAAAGGATAAATATGGAATTTTGGAACGAGGTGGAGAACTAGAGACATCACTTTGCCTTTCAGGCGTTGTTTAATTTTGGGGAAATAGATGGCGCGGGGATGACACTTTGAAAGATGATTTCCAGTGTCTCTATAGAATTTCTTGCCAGAGAGATAGTTCAACAAATTAGGGGGACATAGGCGGAGAGACTTTTTGGGACTTGAGCTTTAGAAGGATGTTAAATGATTGGGAAGTATCAATTGTAATTTTAATTGTCTAAAATAATAAAATGATTGGGGAGTAGGTGAGCTCCAAAGATTGTTAGTCTTAGTACATAGGCAAGACAACCCTATTGATAAGCTTGATGCATGGTGGTAGAGATTTAAGGGAAAATGGCATGTTTATTGTGAAGACTTTCTATGAGAATCTATTGCTTAGGGAGGAGCAAGTGTTTCCATGTAATGCAATATGGATCCCAAAGGCACCAAGGAAGGTGTGCTTTTCACTTGGTTAGCCATAAGAGGCTCGATTTTACAATAAAGAACTTAAAAAAAGCAGAAGATTGTATTCATCGGCTGGTGTTACATCTGCAAGGAGGCGGGTGAGGATGTGGATCATCTTCTCCTACATTGCAGTTTGACAATGAGTGTATGGTGGGATATGTTTAGGTGGTTTGGCGCTCCATGGTTATGGAAAAAATGGTGAAAGAATTGATGTTCAGTTGGAAGAGTGGGAGGAGAAGAAGACGAAGGGATGAAATATGGTGCAACTTGCATAATGTGGGTTGTCTGGAGAGAGAAGAATAAAAGAGCTTTTGAAGGTGTAGAGTCGAGTTCCCCTCAAAGTATCATTCATTCCCTTATTTTATTTTGGTGCACTCAGAAAGTCCCCTATTGTGTAGACGATTGGGTGGAGTTTTTAGAGATTCAGTTGATTGTGTAGATTCTTTACCTTTTGGTATACCACTTGTGTATGGTCATTTTATGGCCTTGTTTATTATATGAAATATGTTTACTTGATCAAAAAGATGATGTGACACAAAGGGATGGTTTCATGATGATAATGTAGAGTGAACATGTCAGTTAACTGGACTAATGTAGATTGTTGACATAACAGTTAAATTGACATGTACTGTTCCCTAAAAAGCAGTTGTAGAGTGCTGATTTTACATGTTAGCTACGGGGACAAATGGATCTTCTTCTAGACAATGTGGATGTGTAGTCACTTTATATTACACTGGAAGGATACAGGGTTTCACCACAGCAATCAGTGTCATCTAGATGGTTAAAAGAGACGAAAATAATTGAATTATTAGGAAAGAAGAAAAAACTTTTTCTGTGCTCATGACCTATGGCAAGTCTACTAAATTGACATGTACTGTTCCCTAACAAGCAGTTGAGAGTTTCTGATATGAAGGATAAGGAGGAGACAAAAAAGAGAACTTTTCAAAGATTTTAGTAACAACGTAGGGACTCCATGTATAGTAGTTTGTCCTTTGGAAAACACAAGGTTCTTTATTAAATTGGACCTTGCTAGTGTTATTTAAACAGTAGGTAGGCAGTGAATGTATGACAACTATCTCTCAAGCACATCTTTAGTTCCAATCTCAATAATTAAATTGAATATTCTTCATCATATATTATGGAATTTAAAAATATTCTGCAACTTTTGCTTTGGAGTATTTCAGAAATATTCTTCTACATAAATTTTATGGATGCAAGCGCAAATTAATATTTGATTTCATTACTTCTCGGTTTTCAATATTGCTTACTCCAAAGCTTTGTATCAGTGTTCAATTGAATATTGATGTTGTTTCTCAATAAATAATGTGTGTGGATATTTTATAATAAAAATAATGTGCATAGATTTATAGGATACACTTACTATTTTCAGGTGGAGACAATTTTGGATAAGGAAAATTTTGCACTGGATGAGCTCTTGGACGAGGATGAAATAATTCAAGAATGTAAAGCTCTTAATGGACGCCTTATTAACTTGTAAGCACCTTATTCGCTTGGTATGCTAGATATAAGTTGTAATAAAATCAAGTTCTATTAATCTTGGATGTGATGTACAAACTACAAAGTATATCCCAACCATTGATGTTTCATGGAAAATCCATTTAAAGTAAATATCTTTTATTGTGAAAAGAAAAGTCTGGATTTGCTGCTGTATGATGAGGTTTATCTGAGGGAGTCTAGTGATGCATGCGTGCATTTGAAGCTTTATTTACGGTTTAAAATTGGCTAGTCTGGATTTAGTAAGAACAAGTGGTTAACTTTGTAATTCTGGTATGTTAATTAGGACTACAACAATTTTAGTGTGCACCAAATAAACATGCCAAGTTATCCTTCTTGAACACAATTTTTTGTTTTTTGTTTTTGTGGGTAGGGTGGGGGTGTTGGTGGGCTGAGGCAGTGCTTGTATTTTAACAAAACTTAGTTTTGTTTCACTATAGACTGTAAAGATCAGTGTTCTTACGAGTTATCAATTAAATGGTGAAGCAATGGGCTTCATAAAAGTGTGCACTTGAAACAATGACAAGCAATGTGATCCCAATGCGAAGTAGTCTCGGTTATTTGAATCTCAACTTTGAATAGTCGGATTAATATTAGCGTTATTGTTTATTGGATTGTGTAATCAGTTATTTTAATTGCATTCTGATCATTATTTTACTAAATTCATGTAATTTTGGTGATCTTTTTAATGTTGTGAATTCTGAGTTTTACTTCAAAGAAGCATATGCTTCACTTCCAGTATTTTGCTTTAAGCATCATGGACCTTGTCGCTATTTTTTTTCGCTTTTGCTTTTTAAAATACGAGTAAACCCTTCGGGGTGACCCAGTGGTTTGAGCTGGGACTTCCATGTTGGAGGTCACAAGTTCGAAACCCCTTGCCAACGAAAGCAAGGGGTTTGCCTTCTGGGTAGAGCTCGTCACACCAGGCTTGCCTAGTGCGGGTAACCTCTCCTATGTGGTCTGCGAACTATCGCATAGGAGCGGGGTTTTACCCTTTGCGCCCCCAAAAGGGTGGCGGCTGCGGGTTTTCCTTGTCGTCAAAAATAAAAATAAAAATACGAGTAAGATATTTTTGTTTGTTTAGACAATATGGAAGAAGTATCATGTGATGACAGGCTTCTATTTTGTAACTGTCTAACTTTGGGGGACTACCCAGTTTGGTATAGAATACCTGCTAATACATAGAATGTCACCATTATAAAAATGGTAATATTATGGAACTTCTGGTGCCATCTCTGCACAAAATTTTTCTTCTTGTAGGATTTAATGGTCATTTCTTGGAAGAACCTGTCAAAAAAGGAAGTCATTCCTTGGAAGAAACTGATCATATTATGCTTTTCTTTCTGACAGTCTGCGAGAAAGAGCTCAAGTTGAACAACTTGTCAGGTACATAGTGGAAGAGGCTCCAGAAGATGCAGAGAAGAAACGAACTTTTAAGTGAGTGTCTGACTGGTGCTGGAAAGTTATTTACATTTCATATGTTATAGGCTCTGAATATTTCTTTGGATGAAAATATGAGTTCTCTTTTTCCTTGACCCCAGTGCATGTATGAAAAGATATCTTGTTTTACTGTGCCACAGGTTTCCTTTTATTGCTTGTGAAATCTTTACATGCGAGGTGGACATAATTCTTAAAGCATTGGTTGAGAATGAGGAGGTATTCACTCTTCTTTTTTTGTCATATATCTTTATTCTGCCTTTGTACTATATGCTCAGTTCCTTGAATATTGTTTATATAAATTGGCTTTGTCATTTTGGATGTCAGCTAATGAACCTGCTATTCTCA-TTTTTGGAACCTGAGCACACACATAGTACTCTGTTGGCCGGTTACTTCAGCAAGGTATCATTGACTACTAGATACATAAGTGTGAATTATGCTTCACTTAGCTATGTATTCCTTTGTTCATATCTCTAAATATATTTAACTGGAAGGGGAGTGGTTAATAAGTTTGCAAGGTTGATTCCTTTACTTATTGGGGAAAAAGTTTGCAAGGTTGACAACTTCTCTGTTGGCGGTACCACGTTTTAGTTTTGAAAAAAAAACTTCTCTTTGAAAAACTATGTTTATTTTTCAATTTTATCCTGTCTAGTTTCTATCGTTTTGCTCCTTTTTCGACCAAAAGCAAGGTGATAGTTGCATGCTAGATCTTCTGTAAGACTGAATGAAGGACTTTACTTGCTGGATTTTAGGTGAAAACAATACTGCATTAATATTTTCTGGAAGTACTTCCATTTTTTAAGGTTTATTTCTTCTGTGAACTGTTATTATGATTTTCAGTTTCTACACTGTACTTGATGCCCAAGTTTCTTATTTTAGGTTGTCATATGCTTGTTGCTGCGGAAAACATCAGCTTTTATGAACTACGTACAAGTAAGTCTGCTGCTTCTTATTAGCTATCACGATTGATTTGCATTACAAAAACACACATATAGGAAATGATTGGATGTTTATGTCAGTCGAGGTAAAGCTGGTCTATGGATGTCCGAATGAAACCTTGCTCCCTTTTAGTCTCCAATCCATTTCTTTTATGTTCTTTAAGATGGTGGAGAGTGTTCGCCTGTTGTGTCTTGTTTATATCTTCTTTGGTTTGAGATGCCATTTCTTGTGCGAGTAACTGGTATGGTCTACCAATAAATTCTTTATGTATTTATGTATCAATCATCTGGCTACTTTTTTAAAAATTTATTGTCCCTTGTAAAATGGTGAAACATTGATATCTACCGCCTCTTAATGCTTTCAATAAAAAGTCAAGCACAGTCAAGCTAATAATTATGGTTTATTCTCTTGTAGGCTCATCAAGATATTATCAAGAAGTTGGTTGATCTCATTGGAATTACATCCATCATGGAGGTTTGTAGTTTTTCAAATAGTTTAAGGCATGTTTTGTTTGTTTAGCATGACTAAATCCAGAAGTTCCAATGCTTTTGATTTAAGGTGTTAATCCGCCTAATTGGCACCGATGAACATTTGTATAGCAACTTCTCGGAGAACATGCAGTGG-TTGGAAGATACAAATGTGCT</genome_strand>
        <mrna_strand>GGCTTCTTTTTTCTTCTCAAAGGTCCCCAAAAAATACAGCAAGGAAAAAAAATGCTTCTTTCCACCGTCTCACAATTGGTGCTAAGTATAATTCTTGATAACAATTGAACCGAATCCAATCTTATCAAAGACTGCTCCCCACCTTTTTCTAGGGCTTCCTGGGTTCAAGATCATTGTTGGGGTTGTTTTCTTTTTGTTCCTAGATCCAAATTGTTGAAAATTCTCTTCTGGGTCGGTTCTTGATTCTGAAAAAATGGCTATGTTTTGGCGTATGGCTGGCCTCTCCACTGCTTCTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGACAATTTTGGATAAGGAAAATTTTGCACTGGATGAGCTCTTGGACGAGGATGAAATAATTCAAGAATGTAAAGCTCTTAATGGACGCCTTATTAACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGAGAAAGAGCTCAAGTTGAACAACTTGTCAGGTACATAGTGGAAGAGGCTCCAGAAGATGCAGAGAAGAAACGAACTTTTAA...............................................................................................................................................GTTTCCTTTTATTGCTTGTGAAATCTTTACATGCGAGGTGGACATAATTCTTAAAGCATTGGTTGAGAATGAGGAG............................................................................................................CTAATGAACCTGCTATTCTCATTTTTTGGAACCTGAGCACACACATAGTACTCTGTTGGCCGGTTACTTCAGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCATATGCTTGTTGCTGCGGAAAACATCAGCTTTTATGAACTACGTACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATCAAGATATTATCAAGAAGTTGGTTGATCTCATTGGAATTACATCCATCATGGAN....................................................................................GTGTTAATCCGCCTAATTGGCACCGATGAANATTTGTATAGCAACTTCTCGGANAACATGCAGNGGNTNGGAANANACAAATGNGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6518" PGL_stop="7431"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6518" e_stop="7431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6518" e_stop="7431" e_length="914"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6518" stop="7216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6672" stop="7431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTATTACCCCAGCATGAAACAGTTGGGAGGCTAAACTCCCAACCCTATCAGTACTCTTGAACAACATAGATATATCATAATGCACATTTGTGTGTATATATCAACAAACACAAACACAAACACAAAACACAAACAGACAAACTCAGTCATTACAATGTCTCACCCAATTTTCCAATCTAATGAGAACAGCCCTTATGGTAACTTGACAAGAGAAGAGTTTTACAAGCAACATAAAATCATGCACAAACAAAGTTTCATGTTAAACAAACAAAACATGAAGATATTCACACAATCTTGGCAGCCTGAATCAAGTAATCAGTTAAGAGGTCTTGTAGGCATGATTCATGGTTATACGTCCGAAAGCAGTTGGCTTTTTGAGCTAAATGCAGTAGCTATGGTGAAAGCTGGATTTTTCGTTTGTTCTCTTGACCTACAAGGTCACGGTTACTCAGAAGGCTCACCTGGTTACATACCGTGTATTCAACCTTTAGTCCAAGACTGTATACAGTACTTTGACTCTGCTCGTGCTGATCACCCGAATCTCCCTGCTTTCCTGTATGGTGAGTCATTAGGTGGTGCAATTTCTACACTCATATGTCTAAGGCAAAAGAATGTATGGAATGGTCTGATGTTAAGTGGACCGATGTTTGGAGTGTCAAAGAAATACAGACCTGTTTGGCCACTGGAGAAGCTACTACCGTTGGCCGCCTTCATAGCTCCATCATGGAGGATTGTGATCACCAAACCACCTGCATCTATATCATACAAAGAGGAGTGGAAGAGAAAGATTATCTCAAAAAGTCCAAATCGCCTGGCTTCCGAGAAGCCACCAGCTGCCACTGCACTAGAGCTTCTGAAAGTCTGTGAGTATATACAGAGGAACTCTCATGAACTACAAGTCCCTTTGCTGAT</gDNA_template>
            <first_frame> I  Y  Y  P  S  M  K  Q  L  G  G  *  T  P  N  P  I  S  T  L  E  Q  H  R  Y  I  I  M  H  I  C  V  Y  I  S  T  N  T  N  T  N  T  K  H  K  Q  T  N  S  V  I  T  M  S  H  P  I  F  Q  S  N  E  N  S  P  Y  G  N  L  T  R  E  E  F  Y  K  Q  H  K  I  M  H  K  Q  S  F  M  L  N  K  Q  N  M  K  I  F  T  Q  S  W  Q  P  E  S  S  N  Q  L  R  G  L  V  G  M  I  H  G  Y  T  S  E  S  S  W  L  F  E  L  N  A  V  A  M  V  K  A  G  F  F  V  C  S  L  D  L  Q  G  H  G  Y  S  E  G  S  P  G  Y  I  P  C  I  Q  P  L  V  Q  D  C  I  Q  Y  F  D  S  A  R  A  D  H  P  N  L  P  A  F  L  Y  G  E  S  L  G  G  A  I  S  T  L  I  C  L  R  Q  K  N  V  W  N  G  L  M  L  S  G  P  M  F  G  V  S  K  K  Y  R  P  V  W  P  L  E  K  L  L  P  L  A  A  F  I  A  P  S  W  R  I  V  I  T  K  P  P  A  S  I  S  Y  K  E  E  W  K  R  K  I  I  S  K  S  P  N  R  L  A  S  E  K  P  P  A  A  T  A  L  E  L  L  K  V  C  E  Y  I  Q  R  N  S  H  E  L  Q  V  P  L  L   </first_frame>
            <second_frame>  F  I  T  P  A  *  N  S  W  E  A  K  L  P  T  L  S  V  L  L  N  N  I  D  I  S  *  C  T  F  V  C  I  Y  Q  Q  T  Q  T  Q  T  Q  N  T  N  R  Q  T  Q  S  L  Q  C  L  T  Q  F  S  N  L  M  R  T  A  L  M  V  T  *  Q  E  K  S  F  T  S  N  I  K  S  C  T  N  K  V  S  C  *  T  N  K  T  *  R  Y  S  H  N  L  G  S  L  N  Q  V  I  S  *  E  V  L  *  A  *  F  M  V  I  R  P  K  A  V  G  F  L  S  *  M  Q  *  L  W  *  K  L  D  F  S  F  V  L  L  T  Y  K  V  T  V  T  Q  K  A  H  L  V  T  Y  R  V  F  N  L  *  S  K  T  V  Y  S  T  L  T  L  L  V  L  I  T  R  I  S  L  L  S  C  M  V  S  H  *  V  V  Q  F  L  H  S  Y  V  *  G  K  R  M  Y  G  M  V  *  C  *  V  D  R  C  L  E  C  Q  R  N  T  D  L  F  G  H  W  R  S  Y  Y  R  W  P  P  S  *  L  H  H  G  G  L  *  S  P  N  H  L  H  L  Y  H  T  K  R  S  G  R  E  R  L  S  Q  K  V  Q  I  A  W  L  P  R  S  H  Q  L  P  L  H  *  S  F  *  K  S  V  S  I  Y  R  G  T  L  M  N  Y  K  S  L  C  *  </second_frame>
            <third_frame>   L  L  P  Q  H  E  T  V  G  R  L  N  S  Q  P  Y  Q  Y  S  *  T  T  *  I  Y  H  N  A  H  L  C  V  Y  I  N  K  H  K  H  K  H  K  T  Q  T  D  K  L  S  H  Y  N  V  S  P  N  F  P  I  *  *  E  Q  P  L  W  *  L  D  K  R  R  V  L  Q  A  T  *  N  H  A  Q  T  K  F  H  V  K  Q  T  K  H  E  D  I  H  T  I  L  A  A  *  I  K  *  S  V  K  R  S  C  R  H  D  S  W  L  Y  V  R  K  Q  L  A  F  *  A  K  C  S  S  Y  G  E  S  W  I  F  R  L  F  S  *  P  T  R  S  R  L  L  R  R  L  T  W  L  H  T  V  Y  S  T  F  S  P  R  L  Y  T  V  L  *  L  C  S  C  *  S  P  E  S  P  C  F  P  V  W  *  V  I  R  W  C  N  F  Y  T  H  M  S  K  A  K  E  C  M  E  W  S  D  V  K  W  T  D  V  W  S  V  K  E  I  Q  T  C  L  A  T  G  E  A  T  T  V  G  R  L  H  S  S  I  M  E  D  C  D  H  Q  T  T  C  I  Y  I  I  Q  R  G  V  E  E  K  D  Y  L  K  K  S  K  S  P  G  F  R  E  A  T  S  C  H  C  T  R  A  S  E  S  L  *  V  Y  T  E  E  L  S  *  T  T  S  P  F  A  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6554" stop="7429"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPNPISTLEQHRYIIMHICVYISTNTNTNTKHKQTNSVITMSHPIFQSNENSPYGNLTREEFYKQHKIMHKQSFMLNKQNMKIFTQSWQPESSNQLRGLVGMIHGYTSESSWLFELNAVAMVKAGFFVCSLDLQGHGYSEGSPGYIPCIQPLVQDCIQYFDSARADHPNLPAFLYGESLGGAISTLICLRQKNVWNGLMLSGPMFGVSKKYRPVWPLEKLLPLAAFIAPSWRIVITKPPASISYKEEWKRKIISKSPNRLASEKPPAATALELLKVCEYIQRNSHELQVPLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8339" PGL_stop="7959"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8339" e_stop="7959"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="8339" e_stop="7959" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8339" stop="7959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTATGTCTTTTAGGCAGTTAGCGCCGAGCAGACTATGACTCCACCATAATCTTCTCTTGCGTTTTTTGAACGGCTAATTACATGGTAAGAGAATACAATAGAATGAAACAAATACTGAGAGGTTTATGACATGGTGCTGGGAAAATATGCAGCTTTTCCTCACAGCATATTAGCCATTTAATTCTGTATCTCAGATTGTTTAATGTATTTGTTATTTTCCCATGAAGTTGTAACCTACAAGTTACTGTTTTTTTATTTCATTACTCATATACTTGTAGAGATTCTTCTTTGTGCACTATGTAACATCAAATGTAATAAAATCCTGATTCATCGAAACTGAATGATCATGAAGTTGAATATTGTAGTGCACCTATTTCAC</gDNA_template>
            <first_frame> T  Y  V  F  *  A  V  S  A  E  Q  T  M  T  P  P  *  S  S  L  A  F  F  E  R  L  I  T  W  *  E  N  T  I  E  *  N  K  Y  *  E  V  Y  D  M  V  L  G  K  Y  A  A  F  P  H  S  I  L  A  I  *  F  C  I  S  D  C  L  M  Y  L  L  F  S  H  E  V  V  T  Y  K  L  L  F  F  Y  F  I  T  H  I  L  V  E  I  L  L  C  A  L  C  N  I  K  C  N  K  I  L  I  H  R  N  *  M  I  M  K  L  N  I  V  V  H  L  F  H </first_frame>
            <second_frame>  L  M  S  F  R  Q  L  A  P  S  R  L  *  L  H  H  N  L  L  L  R  F  L  N  G  *  L  H  G  K  R  I  Q  *  N  E  T  N  T  E  R  F  M  T  W  C  W  E  N  M  Q  L  F  L  T  A  Y  *  P  F  N  S  V  S  Q  I  V  *  C  I  C  Y  F  P  M  K  L  *  P  T  S  Y  C  F  F  I  S  L  L  I  Y  L  *  R  F  F  F  V  H  Y  V  T  S  N  V  I  K  S  *  F  I  E  T  E  *  S  *  S  *  I  L  *  C  T  Y  F   </second_frame>
            <third_frame>   L  C  L  L  G  S  *  R  R  A  D  Y  D  S  T  I  I  F  S  C  V  F  *  T  A  N  Y  M  V  R  E  Y  N  R  M  K  Q  I  L  R  G  L  *  H  G  A  G  K  I  C  S  F  S  S  Q  H  I  S  H  L  I  L  Y  L  R  L  F  N  V  F  V  I  F  P  *  S  C  N  L  Q  V  T  V  F  L  F  H  Y  S  Y  T  C  R  D  S  S  L  C  T  M  *  H  Q  M  *  *  N  P  D  S  S  K  L  N  D  H  E  V  E  Y  C  S  A  P  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0162I09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10313" PGL_stop="8740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10313" e_stop="10120"/>
            <exon e_start="9783" e_stop="9656"/>
            <exon e_start="9360" e_stop="8981"/>
            <exon e_start="8765" e_stop="8740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.478" acc_prob="0.989" e_score="0.995"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.978" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="10313" e_stop="10120" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.478" acc_prob="0.989">
            <gDNA_intron_boundary i_start="10119" i_stop="9784" i_length="336"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9783" e_stop="9656" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9655" i_stop="9361" i_length="295"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="9360" e_stop="8981" e_length="380"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.978">
            <gDNA_intron_boundary i_start="8980" i_stop="8766" i_length="215"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8765" e_stop="8740" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10313" stop="10120"/>
              <exon start="9783" stop="9656"/>
              <exon start="9360" stop="8981"/>
              <exon start="8765" stop="8740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601666" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTATTTACACACTGCACCGCTGTGCCATATTGGTGGTATATCATCAGCCCTGGCCATGCTAATGGCAGGAGGTCGTCATATTTTACTACCAAAGTTTGAAGCTAAATTGGCTGTTGAATCCATAGACCAGCATAGTGTTACTTCTCTCATTACAGTTCCAGCTATGATGACTGATCTAATCTCTTTTTATAA : GACAAAGCACATATCTGTAGGGTCCAAATCTGTGAAGAAGGTTCTTAATGGAGCTGGGGGTCTTTCATCTAGTCTTATCAAAAATGTGATTGAGATATTCCCGAGGGCTAAACTTCTTTCAGCTTACG : GAATGACCGAGGCGTGTTCTTCTCTGACTTTCATGACTCTTTATGACCCGGCGAGAGAGAGTTGTATCCAGCATTCTTATGCCAACAGCTCCAATTTGGCACATAAACCAGATGGTATCTGTGTTGGAAAGCCTGCTCCACATATTGAAATAAGGATTGCTGGGGATGATTCGTCTTGTATAGGGAGGATTTTGACACGAGGTCCCCATTTAATGCTTGGATACTGGGATCAAATGCCAAGCAATAATTCTTCTCCAGTTGATGAATGTTGGCTTGACACTGGTGATATAGGGCATATAGATGATTGTGGAAATATCTGGCTCGTTGGGCGCTTGAAGGGCCGAATAAAGAGTGGGGGAGAAAATGTTTATCCTGAAGAG : GTGGAAGCTGTCTTATTGCAGCATCC</gDNA_template>
            <first_frame> V  Y  L  H  T  A  P  L  C  H  I  G  G  I  S  S  A  L  A  M  L  M  A  G  G  R  H  I  L  L  P  K  F  E  A  K  L  A  V  E  S  I  D  Q  H  S  V  T  S  L  I  T  V  P  A  M  M  T  D  L  I  S  F  Y  K :   T  K  H  I  S  V  G  S  K  S  V  K  K  V  L  N  G  A  G  G  L  S  S  S  L  I  K  N  V  I  E  I  F  P  R  A  K  L  L  S  A  Y   : G  M  T  E  A  C  S  S  L  T  F  M  T  L  Y  D  P  A  R  E  S  C  I  Q  H  S  Y  A  N  S  S  N  L  A  H  K  P  D  G  I  C  V  G  K  P  A  P  H  I  E  I  R  I  A  G  D  D  S  S  C  I  G  R  I  L  T  R  G  P  H  L  M  L  G  Y  W  D  Q  M  P  S  N  N  S  S  P  V  D  E  C  W  L  D  T  G  D  I  G  H  I  D  D  C  G  N  I  W  L  V  G  R  L  K  G  R  I  K  S  G  G  E  N  V  Y  P  E  E  :  V  E  A  V  L  L  Q  H   </first_frame>
            <second_frame>  S  I  Y  T  L  H  R  C  A  I  L  V  V  Y  H  Q  P  W  P  C  *  W  Q  E  V  V  I  F  Y  Y  Q  S  L  K  L  N  W  L  L  N  P  *  T  S  I  V  L  L  L  S  L  Q  F  Q  L  *  *  L  I  *  S  L  F  I   : R  Q  S  T  Y  L  *  G  P  N  L  *  R  R  F  L  M  E  L  G  V  F  H  L  V  L  S  K  M  *  L  R  Y  S  R  G  L  N  F  F  Q  L  T  :  E  *  P  R  R  V  L  L  *  L  S  *  L  F  M  T  R  R  E  R  V  V  S  S  I  L  M  P  T  A  P  I  W  H  I  N  Q  M  V  S  V  L  E  S  L  L  H  I  L  K  *  G  L  L  G  M  I  R  L  V  *  G  G  F  *  H  E  V  P  I  *  C  L  D  T  G  I  K  C  Q  A  I  I  L  L  Q  L  M  N  V  G  L  T  L  V  I  *  G  I  *  M  I  V  E  I  S  G  S  L  G  A  *  R  A  E  *  R  V  G  E  K  M  F  I  L  K  R :   W  K  L  S  Y  C  S  I  </second_frame>
            <third_frame>   L  F  T  H  C  T  A  V  P  Y  W  W  Y  I  I  S  P  G  H  A  N  G  R  R  S  S  Y  F  T  T  K  V  *  S  *  I  G  C  *  I  H  R  P  A  *  C  Y  F  S  H  Y  S  S  S  Y  D  D  *  S  N  L  F  L  *  :  D  K  A  H  I  C  R  V  Q  I  C  E  E  G  S  *  W  S  W  G  S  F  I  *  S  Y  Q  K  C  D  *  D  I  P  E  G  *  T  S  F  S  L  R :   N  D  R  G  V  F  F  S  D  F  H  D  S  L  *  P  G  E  R  E  L  Y  P  A  F  L  C  Q  Q  L  Q  F  G  T  *  T  R  W  Y  L  C  W  K  A  C  S  T  Y  *  N  K  D  C  W  G  *  F  V  L  Y  R  E  D  F  D  T  R  S  P  F  N  A  W  I  L  G  S  N  A  K  Q  *  F  F  S  S  *  *  M  L  A  *  H  W  *  Y  R  A  Y  R  *  L  W  K  Y  L  A  R  W  A  L  E  G  P  N  K  E  W  G  R  K  C  L  S  *  R   : G  G  S  C  L  I  A  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10313" stop="10120"/>
                    <exon start="9783" stop="9656"/>
                    <exon start="9360" stop="8981"/>
                    <exon start="8765" stop="8742"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYLHTAPLCHIGGISSALAMLMAGGRHILLPKFEAKLAVESIDQHSVTSLITVPAMMTDLISFYKTKHISVGSKSVKKVLNGAGGLSSSLIKNVIEIFPRAKLLSAYGMTEACSSLTFMTLYDPARESCIQHSYANSSNLAHKPDGICVGKPAPHIEIRIAGDDSSCIGRILTRGPHLMLGYWDQMPSNNSSPVDECWLDTGDIGHIDDCGNIWLVGRLKGRIKSGGENVYPEEVEAVLLQH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="12645" PGL_stop="10976"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12645" e_stop="12423"/>
            <exon e_start="11686" e_stop="11614"/>
            <exon e_start="11335" e_stop="11170"/>
            <exon e_start="11071" e_stop="10976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.164" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.767" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12645" e_stop="12423" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12422" i_stop="11687" i_length="736"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11686" e_stop="11614" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.164">
            <gDNA_intron_boundary i_start="11613" i_stop="11336" i_length="278"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11335" e_stop="11170" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.850" acc_prob="0.767">
            <gDNA_intron_boundary i_start="11169" i_stop="11072" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11071" e_stop="10976" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12645" stop="12423"/>
              <exon start="11686" stop="11614"/>
              <exon start="11335" stop="11170"/>
              <exon start="11071" stop="10976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCGAATTTATCCTCAAGAAAAATGGCTAATTACTCCAAGGCTCACGTTTGCCAGTGCTTGAGCCGGTTGTCGACGGTTCGCCGGAGCTCAACGGTGATGATAATCGGAGAAAGGAGGAAGACGGGTATGGAATTTGTTGAGGGAGTTTTGGGCCTGGCCCATGGGCTTATTCAATTGGGCCTTAATCCCGGTGATGTCGTCGCCATTTCCGCTCTTAACAG : TGATCTGTATTTGGAGTGGTTACTGGCAGTTGCATATGTAGGAGGGATTACTGCACCTTTCAATTACCGTTGG : AGCCTGGAAGAAGCAAGAGCAGCTCTTCAGGTAGCAAAGCCAACAATATTGGTCCACGATGCAACTGGTAATTTCTGGAAGTCCGAGTCTTATGCTGATTCTGTGGCTTCTCTAAGGTGGCAAGTCTTAATGGATACTCCTTGTGAACTTCATAGCACTAATATTG : GATTAACTACTGAACAGCTGAAAAGAAGTTGCGAAAGGCGTTTAACAGCAGACTACCTGTGGGCACCTAAGGAAGCAGCTATAATATGCTTTACCT</gDNA_template>
            <first_frame> F  R  I  Y  P  Q  E  K  W  L  I  T  P  R  L  T  F  A  S  A  *  A  G  C  R  R  F  A  G  A  Q  R  *  *  *  S  E  K  G  G  R  R  V  W  N  L  L  R  E  F  W  A  W  P  M  G  L  F  N  W  A  L  I  P  V  M  S  S  P  F  P  L  L  T   : V  I  C  I  W  S  G  Y  W  Q  L  H  M  *  E  G  L  L  H  L  S  I  T  V  G :   A  W  K  K  Q  E  Q  L  F  R  *  Q  S  Q  Q  Y  W  S  T  M  Q  L  V  I  S  G  S  P  S  L  M  L  I  L  W  L  L  *  G  G  K  S  *  W  I  L  L  V  N  F  I  A  L  I  L  :  D  *  L  L  N  S  *  K  E  V  A  K  G  V  *  Q  Q  T  T  C  G  H  L  R  K  Q  L  *  Y  A  L  P </first_frame>
            <second_frame>  S  E  F  I  L  K  K  N  G  *  L  L  Q  G  S  R  L  P  V  L  E  P  V  V  D  G  S  P  E  L  N  G  D  D  N  R  R  K  E  E  D  G  Y  G  I  C  *  G  S  F  G  P  G  P  W  A  Y  S  I  G  P  *  S  R  *  C  R  R  H  F  R  S  *  Q  :  *  S  V  F  G  V  V  T  G  S  C  I  C  R  R  D  Y  C  T  F  Q  L  P  L   : E  P  G  R  S  K  S  S  S  S  G  S  K  A  N  N  I  G  P  R  C  N  W  *  F  L  E  V  R  V  L  C  *  F  C  G  F  S  K  V  A  S  L  N  G  Y  S  L  *  T  S  *  H  *  Y  W :   I  N  Y  *  T  A  E  K  K  L  R  K  A  F  N  S  R  L  P  V  G  T  *  G  S  S  Y  N  M  L  Y   </second_frame>
            <third_frame>   P  N  L  S  S  R  K  M  A  N  Y  S  K  A  H  V  C  Q  C  L  S  R  L  S  T  V  R  R  S  S  T  V  M  I  I  G  E  R  R  K  T  G  M  E  F  V  E  G  V  L  G  L  A  H  G  L  I  Q  L  G  L  N  P  G  D  V  V  A  I  S  A  L  N  S :   D  L  Y  L  E  W  L  L  A  V  A  Y  V  G  G  I  T  A  P  F  N  Y  R  W  :  S  L  E  E  A  R  A  A  L  Q  V  A  K  P  T  I  L  V  H  D  A  T  G  N  F  W  K  S  E  S  Y  A  D  S  V  A  S  L  R  W  Q  V  L  M  D  T  P  C  E  L  H  S  T  N  I   : G  L  T  T  E  Q  L  K  R  S  C  E  R  R  L  T  A  D  Y  L  W  A  P  K  E  A  A  I  I  C  F  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12643" stop="12423"/>
                    <exon start="11686" stop="11614"/>
                    <exon start="11335" stop="11170"/>
                    <exon start="11071" stop="10977"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNLSSRKMANYSKAHVCQCLSRLSTVRRSSTVMIIGERRKTGMEFVEGVLGLAHGLIQLGLNPGDVVAISALNSDLYLEWLLAVAYVGGITAPFNYRWSLEEARAALQVAKPTILVHDATGNFWKSESYADSVASLRWQVLMDTPCELHSTNIGLTTEQLKRSCERRLTADYLWAPKEAAIICFT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="18231" PGL_stop="18999"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18231" e_stop="18999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="18231" e_stop="18999" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18231" stop="18999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTATATCTCATCTGCTTCTCTTAACTTTTTTTTTTTTTTTTCAATTCAAAATTTTATAATGAGGCAAAATTTTCTAGTTGTTGTTCTCACATTCATCGTCGTAGTATTATCGTCGTCTCGATCCAATTGCAGAGAGCTTCGTCCGGCGGAGCACGGATTGGCGACGACGGAGAATCAAAACTCAGATTCCAGTACTACAAACGATGAAATTCCGGAGATGATGTCGTTCTTCGGCGGTAATGGCGGCCGGCGGGATACTAAGCCGCCGGTAGCTAAGCCGATGGCGGAGAACGTGACGTGGATCGGCGGCGAGAGAGGAGGAATATCAGTTCATCACAACAGTAGAGATCATGTGAGGGATGTGTTGCTGATTTCCAGTTTGGTTTGTGGAGCTACCGGCGTCGTTTTGCTTGCCGTTTCAGTGTTTGTTTGTGTCGTTTTGAGGTTTCGGAAGGAGAAATCGGTGGAAAATGGAAAAGAAACGACGCCGTTGGGTACGCCAGTAGATGACGTTGTTCTCGCTCAGAAAGGAACTTAACTATCCTGCTTCGAAAATTACTCGAATGGTAAACATTTTTCACCTATAATTAATTATTACGAATTCGAGTCACTATCGAGCAAAGAGATAAAAAGCTCGCAGGGAAGAGATAAAAAAAACTTACAGTGGTCCATTTTCAATGTTTTTGTAGCACCTTTTTAATATTCTTCTTTCTTTTTGTTATTCTGTATGTATAGCCGGAGTATATATTTATCATTTTTTTTATCTT</gDNA_template>
            <first_frame> Q  Y  I  S  S  A  S  L  N  F  F  F  F  F  S  I  Q  N  F  I  M  R  Q  N  F  L  V  V  V  L  T  F  I  V  V  V  L  S  S  S  R  S  N  C  R  E  L  R  P  A  E  H  G  L  A  T  T  E  N  Q  N  S  D  S  S  T  T  N  D  E  I  P  E  M  M  S  F  F  G  G  N  G  G  R  R  D  T  K  P  P  V  A  K  P  M  A  E  N  V  T  W  I  G  G  E  R  G  G  I  S  V  H  H  N  S  R  D  H  V  R  D  V  L  L  I  S  S  L  V  C  G  A  T  G  V  V  L  L  A  V  S  V  F  V  C  V  V  L  R  F  R  K  E  K  S  V  E  N  G  K  E  T  T  P  L  G  T  P  V  D  D  V  V  L  A  Q  K  G  T  *  L  S  C  F  E  N  Y  S  N  G  K  H  F  S  P  I  I  N  Y  Y  E  F  E  S  L  S  S  K  E  I  K  S  S  Q  G  R  D  K  K  N  L  Q  W  S  I  F  N  V  F  V  A  P  F  *  Y  S  S  F  F  L  L  F  C  M  Y  S  R  S  I  Y  L  S  F  F  L  S  </first_frame>
            <second_frame>  S  I  S  H  L  L  L  L  T  F  F  F  F  F  Q  F  K  I  L  *  *  G  K  I  F  *  L  L  F  S  H  S  S  S  *  Y  Y  R  R  L  D  P  I  A  E  S  F  V  R  R  S  T  D  W  R  R  R  R  I  K  T  Q  I  P  V  L  Q  T  M  K  F  R  R  *  C  R  S  S  A  V  M  A  A  G  G  I  L  S  R  R  *  L  S  R  W  R  R  T  *  R  G  S  A  A  R  E  E  E  Y  Q  F  I  T  T  V  E  I  M  *  G  M  C  C  *  F  P  V  W  F  V  E  L  P  A  S  F  C  L  P  F  Q  C  L  F  V  S  F  *  G  F  G  R  R  N  R  W  K  M  E  K  K  R  R  R  W  V  R  Q  *  M  T  L  F  S  L  R  K  E  L  N  Y  P  A  S  K  I  T  R  M  V  N  I  F  H  L  *  L  I  I  T  N  S  S  H  Y  R  A  K  R  *  K  A  R  R  E  E  I  K  K  T  Y  S  G  P  F  S  M  F  L  *  H  L  F  N  I  L  L  S  F  C  Y  S  V  C  I  A  G  V  Y  I  Y  H  F  F  Y  L </second_frame>
            <third_frame>   V  Y  L  I  C  F  S  *  L  F  F  F  F  F  N  S  K  F  Y  N  E  A  K  F  S  S  C  C  S  H  I  H  R  R  S  I  I  V  V  S  I  Q  L  Q  R  A  S  S  G  G  A  R  I  G  D  D  G  E  S  K  L  R  F  Q  Y  Y  K  R  *  N  S  G  D  D  V  V  L  R  R  *  W  R  P  A  G  Y  *  A  A  G  S  *  A  D  G  G  E  R  D  V  D  R  R  R  E  R  R  N  I  S  S  S  Q  Q  *  R  S  C  E  G  C  V  A  D  F  Q  F  G  L  W  S  Y  R  R  R  F  A  C  R  F  S  V  C  L  C  R  F  E  V  S  E  G  E  I  G  G  K  W  K  R  N  D  A  V  G  Y  A  S  R  *  R  C  S  R  S  E  R  N  L  T  I  L  L  R  K  L  L  E  W  *  T  F  F  T  Y  N  *  L  L  R  I  R  V  T  I  E  Q  R  D  K  K  L  A  G  K  R  *  K  K  L  T  V  V  H  F  Q  C  F  C  S  T  F  L  I  F  F  F  L  F  V  I  L  Y  V  *  P  E  Y  I  F  I  I  F  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18231" stop="18770"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYISSASLNFFFFFSIQNFIMRQNFLVVVLTFIVVVLSSSRSNCRELRPAEHGLATTENQNSDSSTTNDEIPEMMSFFGGNGGRRDTKPPVAKPMAENVTWIGGERGGISVHHNSRDHVRDVLLISSLVCGATGVVLLAVSVFVCVVLRFRKEKSVENGKETTPLGTPVDDVVLAQKGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="28158" PGL_stop="32789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28158" e_stop="28271"/>
            <exon e_start="28630" e_stop="29209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.883" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="28158" e_stop="28271" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.883">
            <gDNA_intron_boundary i_start="28272" i_stop="28629" i_length="358"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28630" e_stop="29209" e_length="580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28158" stop="28271"/>
              <exon start="28630" stop="29209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATTTTTGAAAAAGATTCATGTTAATGGCAACTCTTCTAGCTTCTTCTTCATGGGTTTAACCTATTTTTAATGGGGTTTTGAGATTCTAGATCAGCGTCAGCTTAAAACCTAG : TTAAGAGACGATCGTGTTACTGTATCGAATGTGTCCTCTTGGGATTGTTGCTCAATCTGTTTTGTGTTCGGCATATCTATATTCTGAAATAGTTCGTCAATTTAGTGCTTCATTTGTCGAGGCTTTTACCTGAAGAAGACTTGATGAGGATTTCCCGAGCATGGTTGAGATCAATGTGAAAATAAGAATGCCGGAAAGTCTAAAGTGTGCTTTCAGAAATGAAACCATTTTGAACCTAAGCAGATGAAGATAAGTAGACCTGGTTAATTTAATATTGTTTTCTGTTGTTTTTTTGGTGTAAATAATTGATTGCGTTTGCTTTTAAATGGGGATTTCTCTCTCACTTTCTTGTTCTGTTAGTTGGAACCATGAGCTCTAAGAGTTAATCACATCACTAAAGGTAAAAAACAATATTTTGGATGTTGCTGGATAAAGAGAATTTTTTAATATCCTTTTCTTTCTGTAACTCGGAGTTTAGCTTGATGGTCAAATCAATGAAGCTGTAATGGATCACGTGTTGTTATTTTGTTGTGTGTAAGTAGCTTTGTGTCTTTTAAAGTTCAGTATTTTGGGGCACCTA</gDNA_template>
            <first_frame> E  F  L  K  K  I  H  V  N  G  N  S  S  S  F  F  F  M  G  L  T  Y  F  *  W  G  F  E  I  L  D  Q  R  Q  L  K  T  *  :  L  R  D  D  R  V  T  V  S  N  V  S  S  W  D  C  C  S  I  C  F  V  F  G  I  S  I  F  *  N  S  S  S  I  *  C  F  I  C  R  G  F  Y  L  K  K  T  *  *  G  F  P  E  H  G  *  D  Q  C  E  N  K  N  A  G  K  S  K  V  C  F  Q  K  *  N  H  F  E  P  K  Q  M  K  I  S  R  P  G  *  F  N  I  V  F  C  C  F  F  G  V  N  N  *  L  R  L  L  L  N  G  D  F  S  L  T  F  L  F  C  *  L  E  P  *  A  L  R  V  N  H  I  T  K  G  K  K  Q  Y  F  G  C  C  W  I  K  R  I  F  *  Y  P  F  L  S  V  T  R  S  L  A  *  W  S  N  Q  *  S  C  N  G  S  R  V  V  I  L  L  C  V  S  S  F  V  S  F  K  V  Q  Y  F  G  A  P  </first_frame>
            <second_frame>  N  F  *  K  R  F  M  L  M  A  T  L  L  A  S  S  S  W  V  *  P  I  F  N  G  V  L  R  F  *  I  S  V  S  L  K  P  S :   *  E  T  I  V  L  L  Y  R  M  C  P  L  G  I  V  A  Q  S  V  L  C  S  A  Y  L  Y  S  E  I  V  R  Q  F  S  A  S  F  V  E  A  F  T  *  R  R  L  D  E  D  F  P  S  M  V  E  I  N  V  K  I  R  M  P  E  S  L  K  C  A  F  R  N  E  T  I  L  N  L  S  R  *  R  *  V  D  L  V  N  L  I  L  F  S  V  V  F  L  V  *  I  I  D  C  V  C  F  *  M  G  I  S  L  S  L  S  C  S  V  S  W  N  H  E  L  *  E  L  I  T  S  L  K  V  K  N  N  I  L  D  V  A  G  *  R  E  F  F  N  I  L  F  F  L  *  L  G  V  *  L  D  G  Q  I  N  E  A  V  M  D  H  V  L  L  F  C  C  V  *  V  A  L  C  L  L  K  F  S  I  L  G  H  L </second_frame>
            <third_frame>   I  F  E  K  D  S  C  *  W  Q  L  F  *  L  L  L  H  G  F  N  L  F  L  M  G  F  *  D  S  R  S  A  S  A  *  N  L   : V  K  R  R  S  C  Y  C  I  E  C  V  L  L  G  L  L  L  N  L  F  C  V  R  H  I  Y  I  L  K  *  F  V  N  L  V  L  H  L  S  R  L  L  P  E  E  D  L  M  R  I  S  R  A  W  L  R  S  M  *  K  *  E  C  R  K  V  *  S  V  L  S  E  M  K  P  F  *  T  *  A  D  E  D  K  *  T  W  L  I  *  Y  C  F  L  L  F  F  W  C  K  *  L  I  A  F  A  F  K  W  G  F  L  S  H  F  L  V  L  L  V  G  T  M  S  S  K  S  *  S  H  H  *  R  *  K  T  I  F  W  M  L  L  D  K  E  N  F  L  I  S  F  S  F  C  N  S  E  F  S  L  M  V  K  S  M  K  L  *  W  I  T  C  C  Y  F  V  V  C  K  *  L  C  V  F  *  S  S  V  F  W  G  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0162I09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28244" e_stop="28271"/>
            <exon e_start="29534" e_stop="29766"/>
            <exon e_start="30517" e_stop="30903"/>
            <exon e_start="32708" e_stop="32789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.782" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28244" e_stop="28271" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.888">
            <gDNA_intron_boundary i_start="28272" i_stop="29533" i_length="1262"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29534" e_stop="29766" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.929" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29767" i_stop="30516" i_length="750"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30517" e_stop="30903" e_length="387"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.782">
            <gDNA_intron_boundary i_start="30904" i_stop="32707" i_length="1804"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32708" e_stop="32789" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28244" stop="28271"/>
              <exon start="29534" stop="29766"/>
              <exon start="30517" stop="30903"/>
              <exon start="32708" stop="32789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTAGATCAGCGTCAGCTTAAAACCTAG : GGATTAACAGCATTACAAGAGCAATGACAACTGTAAGTCCTTATTTTGATGACTTGCGATGTCAACCTGAGGTCATTCATCCTCCACAAAACGAAGACTGCATGGACATTGGTGAACATATGAATGAGCCTGCTCAACATACAGCAAAACCTAATGTGACTGTTTCCAGTAGTGTTCGTGAATTGTTGGAATGCCCTGTATGCTTAAATGCTATGTATCCACCCATCCATCAG : TGTTCCAACGGTCACACACTGTGTTCTGGTTGCAAACCTAGGGTTCACAATCGCTGTCCAACATGTCGGCATGAACTTGGTAATATCCGATGTCTTGCGTTGGAGAAGGTTGCTGCATCTCTTGAACTCCCATGTAAATACCAGAACTTTGGATGCATAGGCATCATTCCTTACTACAGCAAGCTAAAGCATGAGTCCCAATGCTCCTTCAGACCCTATAATTGTCCCTATGCGGGATCAGACTGCACTGTCATCGGTGACATACCATATATAGTTGCCCATCTAAAAGATGATCACAAAGTTGACATGCACATGGGCAGTACTTTCAACCATCGCTATGTGAAGTCAAAACCCCATGAAGTGGAAAATGCTACATGGATGCTCACA : GTTTTCAGTTGCTTTGGTCAGTACTTCTGTTTACACTTCGAAGCATTTCAACTTGGAATGGCACCAGTTTATATTGCATTTT</gDNA_template>
            <first_frame> S  R  S  A  S  A  *  N  L   : G  I  N  S  I  T  R  A  M  T  T  V  S  P  Y  F  D  D  L  R  C  Q  P  E  V  I  H  P  P  Q  N  E  D  C  M  D  I  G  E  H  M  N  E  P  A  Q  H  T  A  K  P  N  V  T  V  S  S  S  V  R  E  L  L  E  C  P  V  C  L  N  A  M  Y  P  P  I  H  Q  :  C  S  N  G  H  T  L  C  S  G  C  K  P  R  V  H  N  R  C  P  T  C  R  H  E  L  G  N  I  R  C  L  A  L  E  K  V  A  A  S  L  E  L  P  C  K  Y  Q  N  F  G  C  I  G  I  I  P  Y  Y  S  K  L  K  H  E  S  Q  C  S  F  R  P  Y  N  C  P  Y  A  G  S  D  C  T  V  I  G  D  I  P  Y  I  V  A  H  L  K  D  D  H  K  V  D  M  H  M  G  S  T  F  N  H  R  Y  V  K  S  K  P  H  E  V  E  N  A  T  W  M  L  T  :  V  F  S  C  F  G  Q  Y  F  C  L  H  F  E  A  F  Q  L  G  M  A  P  V  Y  I  A  F  </first_frame>
            <second_frame>  L  D  Q  R  Q  L  K  T  *  :  G  L  T  A  L  Q  E  Q  *  Q  L  *  V  L  I  L  M  T  C  D  V  N  L  R  S  F  I  L  H  K  T  K  T  A  W  T  L  V  N  I  *  M  S  L  L  N  I  Q  Q  N  L  M  *  L  F  P  V  V  F  V  N  C  W  N  A  L  Y  A  *  M  L  C  I  H  P  S  I  S :   V  P  T  V  T  H  C  V  L  V  A  N  L  G  F  T  I  A  V  Q  H  V  G  M  N  L  V  I  S  D  V  L  R  W  R  R  L  L  H  L  L  N  S  H  V  N  T  R  T  L  D  A  *  A  S  F  L  T  T  A  S  *  S  M  S  P  N  A  P  S  D  P  I  I  V  P  M  R  D  Q  T  A  L  S  S  V  T  Y  H  I  *  L  P  I  *  K  M  I  T  K  L  T  C  T  W  A  V  L  S  T  I  A  M  *  S  Q  N  P  M  K  W  K  M  L  H  G  C  S  Q :   F  S  V  A  L  V  S  T  S  V  Y  T  S  K  H  F  N  L  E  W  H  Q  F  I  L  H  F </second_frame>
            <third_frame>   *  I  S  V  S  L  K  P  R :   D  *  Q  H  Y  K  S  N  D  N  C  K  S  L  F  *  *  L  A  M  S  T  *  G  H  S  S  S  T  K  R  R  L  H  G  H  W  *  T  Y  E  *  A  C  S  T  Y  S  K  T  *  C  D  C  F  Q  *  C  S  *  I  V  G  M  P  C  M  L  K  C  Y  V  S  T  H  P  S   : V  F  Q  R  S  H  T  V  F  W  L  Q  T  *  G  S  Q  S  L  S  N  M  S  A  *  T  W  *  Y  P  M  S  C  V  G  E  G  C  C  I  S  *  T  P  M  *  I  P  E  L  W  M  H  R  H  H  S  L  L  Q  Q  A  K  A  *  V  P  M  L  L  Q  T  L  *  L  S  L  C  G  I  R  L  H  C  H  R  *  H  T  I  Y  S  C  P  S  K  R  *  S  Q  S  *  H  A  H  G  Q  Y  F  Q  P  S  L  C  E  V  K  T  P  *  S  G  K  C  Y  M  D  A  H   : S  F  Q  L  L  W  S  V  L  L  F  T  L  R  S  I  S  T  W  N  G  T  S  L  Y  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28265" stop="28271"/>
                    <exon start="29534" stop="29766"/>
                    <exon start="30517" stop="30903"/>
                    <exon start="32708" stop="32788"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLGINSITRAMTTVSPYFDDLRCQPEVIHPPQNEDCMDIGEHMNEPAQHTAKPNVTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQNFGCIGIIPYYSKLKHESQCSFRPYNCPYAGSDCTVIGDIPYIVAHLKDDHKVDMHMGSTFNHRYVKSKPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="33314" PGL_stop="32873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33314" e_stop="32873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="33314" e_stop="32873" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33314" stop="32873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598289" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTAACTTATTGAATTTCAATAAAGAGAACTTTCATGGATACAGATTTTTTACTGTGACAGTAAGTAATACACAACCTACAGCAAGACACATTCTACAAACTGACGTAGGCCTTCTCACTAATGTATTTTAATCATGGACAAAGCAAAGAGAGGTTGCTTCTTGTTCAAGAAAATACATTGATCAGAAGACTTTTAACTGATTGCTAGATAAATAAAAACCTACTTCTTGGACTAAAACAGTACATCAACTGCTACAACTACAAGTGTACTGCTACAATGGACGTCATTGTTCTTTCCATATCCTACCAGTAACTCTGAGCTTCAGTTCTTTCCGGTCTCCACCAGAAAAGAAGAGCGCCATATTACGCTGAATGATGAGGCCATCAAAACTGTCTCGAACCTTACGGTAACTGTCCCTGATGCTTCGAGGTACCCCTTG</gDNA_template>
            <first_frame> K  L  T  Y  *  I  S  I  K  R  T  F  M  D  T  D  F  L  L  *  Q  *  V  I  H  N  L  Q  Q  D  T  F  Y  K  L  T  *  A  F  S  L  M  Y  F  N  H  G  Q  S  K  E  R  L  L  L  V  Q  E  N  T  L  I  R  R  L  L  T  D  C  *  I  N  K  N  L  L  L  G  L  K  Q  Y  I  N  C  Y  N  Y  K  C  T  A  T  M  D  V  I  V  L  S  I  S  Y  Q  *  L  *  A  S  V  L  S  G  L  H  Q  K  R  R  A  P  Y  Y  A  E  *  *  G  H  Q  N  C  L  E  P  Y  G  N  C  P  *  C  F  E  V  P  L  </first_frame>
            <second_frame>  N  *  L  I  E  F  Q  *  R  E  L  S  W  I  Q  I  F  Y  C  D  S  K  *  Y  T  T  Y  S  K  T  H  S  T  N  *  R  R  P  S  H  *  C  I  L  I  M  D  K  A  K  R  G  C  F  L  F  K  K  I  H  *  S  E  D  F  *  L  I  A  R  *  I  K  T  Y  F  L  D  *  N  S  T  S  T  A  T  T  T  S  V  L  L  Q  W  T  S  L  F  F  P  Y  P  T  S  N  S  E  L  Q  F  F  P  V  S  T  R  K  E  E  R  H  I  T  L  N  D  E  A  I  K  T  V  S  N  L  T  V  T  V  P  D  A  S  R  Y  P  L </second_frame>
            <third_frame>   T  N  L  L  N  F  N  K  E  N  F  H  G  Y  R  F  F  T  V  T  V  S  N  T  Q  P  T  A  R  H  I  L  Q  T  D  V  G  L  L  T  N  V  F  *  S  W  T  K  Q  R  E  V  A  S  C  S  R  K  Y  I  D  Q  K  T  F  N  *  L  L  D  K  *  K  P  T  S  W  T  K  T  V  H  Q  L  L  Q  L  Q  V  Y  C  Y  N  G  R  H  C  S  F  H  I  L  P  V  T  L  S  F  S  S  F  R  S  P  P  E  K  K  S  A  I  L  R  *  M  M  R  P  S  K  L  S  R  T  L  R  *  L  S  L  M  L  R  G  T  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33076" stop="32873"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSTSTATTTSVLLQWTSLFFPYPTSNSELQFFPVSTRKEERHITLNDEAIKTVSNLTVTVPDASRYPL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="34141" PGL_stop="40176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34141" e_stop="34378"/>
            <exon e_start="35097" e_stop="35160"/>
            <exon e_start="35912" e_stop="36057"/>
            <exon e_start="37955" e_stop="38062"/>
            <exon e_start="38153" e_stop="38317"/>
            <exon e_start="39553" e_stop="40176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.870" e_score="0.987"/>
          <exon-intron don_prob="0.856" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.871" acc_prob="0.473" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.981"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="34141" e_stop="34378" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.870">
            <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35097" e_stop="35160" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.856" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35912" e_stop="36057" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.871" acc_prob="0.473">
            <gDNA_intron_boundary i_start="36058" i_stop="37954" i_length="1897"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="37955" e_stop="38062" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="38153" e_stop="38317" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38318" i_stop="39552" i_length="1235"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="39553" e_stop="40176" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34141" stop="34378"/>
              <exon start="35097" stop="35160"/>
              <exon start="35912" stop="36057"/>
              <exon start="37955" stop="38062"/>
              <exon start="38153" stop="38317"/>
              <exon start="39553" stop="40176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGATCTATCTTCTCAAACGAGATTTCCAATTCAAATTTAATCATATTATATTAATATCAATATAAATATCATATAAATCTAAATTTAATTATGCTCTCAGAAAATAAAGGATGACAAAAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG : GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG : ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG : TTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATG : GTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG : CCTTACTTGCATGAATCACGACATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAAACTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTAAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCCTTCAAAATGTTGTTCTAGTAAGTGTATGGAATATCGAGTCAGAAATTTGAGTAATAACGTTTGGCACTACGTTTTGTTAGTTTAAGAAGATAAGCGTGCAGCACTGTTGGTTGATGAATTCTAATTTTCCAAGGTCAATGCATTCTGTGTCAATATCTTGGTTATCT</gDNA_template>
            <first_frame> E  I  Y  L  L  K  R  D  F  Q  F  K  F  N  H  I  I  L  I  S  I  *  I  S  Y  K  S  K  F  N  Y  A  L  R  K  *  R  M  T  K  R  I  V  T  V  T  N  T  *  *  S  S  L  *  R  R  K  F  N  R  E  H  Q  N  *  S  C  L  L  V  F  V  Y  T  K  L  F  P  K   : G  L  L  L  W  R  F  C  G  K  Q  H  Y  D  V  L  A  S  L  S  F  R :   W  *  *  E  *  T  V  R  K  S  I  R  S  P  Q  R  V  F  I  A  C  S  W  N  V  C  P  W  H  C  N  N  K  Y  A  L  C  Y  A  Q  S  T  W  E  W  K  S  Y   : V  A  G  S  N  S  L  S  I  S  R  P  I  L  *  E  H  L  C  T  V  *  S  T  T  L  S  S  T  T  L  S  S  T  T  N   : G  S  H  S  A  N  G  N  S  T  S  G  C  S  F  A  I  R  C  D  R  R  T  C  F  C  *  C  K  T  V  S  W  H  L  E  A  S  T  I  S  R  E  S  *  V  R  K  E  T  S  E  S  *  E   : A  L  L  A  *  I  T  T  F  A  C  I  E  K  S  *  R  M  W  R  S  F  P  D  S  K  G  N  *  *  S  A  E  T  G  *  N  W  *  *  I  S  S  Q  H  *  S  R  V  W  K  R  Q  G  R  F  F  R  E  C  L  L  I  Y  A  I  S  R  T  L  W  T  I  V  C  C  Y  C  L  *  K  Q  Q  C  F  C  *  N  R  I  V  V  A  G  Q  N  Q  G  N  C  G  V  L  Y  V  Y  L  S  V  D  R  S  E  *  A  Y  S  F  E  S  Y  K  V  A  A  G  R  M  F  S  K  Y  H  L  S  E  L  V  C  R  H  S  F  L  S  F  R  N  C  L  V  I  P  S  K  C  C  S  S  K  C  M  E  Y  R  V  R  N  L  S  N  N  V  W  H  Y  V  L  L  V  *  E  D  K  R  A  A  L  L  V  D  E  F  *  F  S  K  V  N  A  F  C  V  N  I  L  V  I  </first_frame>
            <second_frame>  R  S  I  F  S  N  E  I  S  N  S  N  L  I  I  L  Y  *  Y  Q  Y  K  Y  H  I  N  L  N  L  I  M  L  S  E  N  K  G  *  Q  K  E  *  *  Q  L  Q  T  R  S  K  A  L  S  R  E  G  N  S  T  E  N  T  K  I  K  A  A  Y  W  F  S  Y  T  R  S  S  S  R  K  :  V  C  Y  F  G  D  S  V  A  S  S  I  M  T  S  S  L  H  Y  H  S   : D  G  S  E  N  E  Q  S  E  N  Q  S  E  A  H  S  E  S  S  S  P  A  A  G  M  S  V  P  G  T  V  T  T  N  M  H  Y  V  M  P  N  Q  L  G  N  G  N  P  M  :  L  Q  A  Q  T  A  Y  P  Y  P  D  P  Y  Y  R  S  I  F  A  P  Y  D  P  Q  P  Y  P  P  Q  P  Y  P  A  Q  P  M  :  V  H  I  Q  L  M  G  I  Q  Q  A  G  V  P  L  P  S  D  A  I  D  E  P  V  F  V  N  A  K  Q  Y  H  G  I  L  R  R  R  Q  S  R  A  K  A  E  S  E  K  K  L  L  K  A  R  K  :  P  Y  L  H  E  S  R  H  L  H  A  L  K  R  A  R  G  C  G  G  R  F  L  T  A  K  E  T  D  N  Q  Q  K  Q  D  E  T  G  D  K  S  Q  V  N  I  N  L  E  S  G  K  D  K  V  A  S  S  E  N  A  S  *  S  M  Q  Y  Q  G  L  C  G  P  *  Y  V  V  T  V  C  R  N  S  S  A  F  V  K  I  E  L  W  *  L  G  K  I  R  V  I  V  V  F  C  M  F  I  *  V  *  I  D  R  N  R  P  T  R  L  R  A  T  K  W  P  L  G  V  C  S  L  N  T  I  S  L  S  L  F  V  D  I  L  S  C  P  F  V  I  A  L  *  F  L  Q  N  V  V  L  V  S  V  W  N  I  E  S  E  I  *  V  I  T  F  G  T  T  F  C  *  F  K  K  I  S  V  Q  H  C  W  L  M  N  S  N  F  P  R  S  M  H  S  V  S  I  S  W  L  S </second_frame>
            <third_frame>   D  L  S  S  Q  T  R  F  P  I  Q  I  *  S  Y  Y  I  N  I  N  I  N  I  I  *  I  *  I  *  L  C  S  Q  K  I  K  D  D  K  K  N  S  N  S  Y  K  H  V  V  K  L  S  L  E  K  E  I  Q  Q  R  T  P  K  L  K  L  L  I  G  F  R  I  H  E  A  L  P  E  R :   F  V  T  L  E  I  L  W  Q  A  A  L  *  R  P  R  F  I  I  I  Q  :  M  V  V  R  M  N  S  Q  K  I  N  Q  K  P  T  A  S  L  H  R  L  Q  L  E  C  L  S  L  A  L  *  Q  Q  I  C  T  M  L  C  P  I  N  L  G  M  E  I  L  C :   C  R  L  K  Q  L  I  H  I  Q  T  H  T  I  G  A  S  L  H  R  M  I  H  N  L  I  L  H  N  L  I  Q  H  N  Q  W :   F  T  F  S  *  W  E  F  N  K  R  V  F  L  C  H  Q  M  R  *  T  N  L  F  L  L  M  Q  N  S  I  M  A  S  *  G  V  D  N  L  A  R  K  L  S  Q  K  R  N  F  *  K  L  G  S :   L  T  C  M  N  H  D  I  C  M  H  *  K  E  L  E  D  V  E  V  V  S  *  Q  Q  R  K  L  I  I  S  R  N  R  M  K  L  V  I  N  L  K  S  T  L  I  S  S  L  E  K  T  R  S  L  L  Q  R  M  P  L  D  L  C  N  I  K  D  F  V  D  H  S  M  L  L  L  F  V  E  T  A  V  L  L  L  K  *  N  C  G  S  W  A  K  S  G  *  L  W  C  S  V  C  L  S  E  C  R  *  I  G  I  G  L  L  V  *  E  L  Q  S  G  R  W  A  Y  V  L  *  I  P  S  L  *  A  C  L  *  T  F  F  L  V  L  S  *  L  P  C  D  S  F  K  M  L  F  *  *  V  Y  G  I  S  S  Q  K  F  E  *  *  R  L  A  L  R  F  V  S  L  R  R  *  A  C  S  T  V  G  *  *  I  L  I  F  Q  G  Q  C  I  L  C  Q  Y  L  G  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34271" stop="34378"/>
                    <exon start="35097" stop="35160"/>
                    <exon start="35912" stop="36057"/>
                    <exon start="37955" stop="38062"/>
                    <exon start="38153" stop="38317"/>
                    <exon start="39553" stop="39738"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLQTRSKALSREGNSTENTKIKAAYWFSYTRSSSRKVCYFGDSVASSIMTSSLHYHSDGSENEQSENQSEAHSESSSPAAGMSVPGTVTTNMHYVMPNQLGNGNPMLQAQTAYPYPDPYYRSIFAPYDPQPYPPQPYPAQPMVHIQLMGIQQAGVPLPSDAIDEPVFVNAKQYHGILRRRQSRAKAESEKKLLKARKPYLHESRHLHALKRARGCGGRFLTAKETDNQQKQDETGDKSQVNINLESGKDKVASSENAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39894" stop="40094"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYSFESYKVAAGRMFSKYHLSELVCRHSFLSFRNCLVIPSKCCSSKCMEYRVRNLSNNVWHYVLLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34257" e_stop="34378"/>
            <exon e_start="35097" e_stop="35160"/>
            <exon e_start="35912" e_stop="36579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34257" e_stop="34378" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.870">
            <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35097" e_stop="35160" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.856" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35912" e_stop="36579" e_length="668"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34257" stop="34378"/>
              <exon start="35097" stop="35160"/>
              <exon start="35912" stop="36579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566007" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG : GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG : ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATC</gDNA_template>
            <first_frame> K  K  N  S  N  S  Y  K  H  V  V  K  L  S  L  E  K  E  I  Q  Q  R  T  P  K  L  K  L  L  I  G  F  R  I  H  E  A  L  P  E  R :   F  V  T  L  E  I  L  W  Q  A  A  L  *  R  P  R  F  I  I  I  Q  :  M  V  V  R  M  N  S  Q  K  I  N  Q  K  P  T  A  S  L  H  R  L  Q  L  E  C  L  S  L  A  L  *  Q  Q  I  C  T  M  L  C  P  I  N  L  G  M  E  I  L  W  Y  I  *  S  T  N  *  L  L  M  T  D  F  *  K  S  L  L  S  P  E  L  I  S  S  A  *  *  L  F  L  L  I  D  A  T  A  F  L  F  F  R  S  D  V  I  I  E  L  L  S  *  I  N  *  G  Y  C  Q  K  S  N  R  L  Q  I  S  E  E  L  I  D  C  N  R  Y  V  D  I  L  T  M  V  L  *  I  L  S  F  C  T  C  *  *  A  S  L  F  W  E  M  K  C  T  C  S  Y  L  A  I  I  R  M  *  Y  R  S  S  L  H  *  Q  R  H  H  F  D  I  C  N  I  Q  H  E  T  A  Y  I  S  C  P  N  S  W  L  C  K  S  L  K  A  K  L  I  I  N  I  L  M  W  G  I  M  E  L  *  L  C  L  W  I  L  V   </first_frame>
            <second_frame>  K  R  I  V  T  V  T  N  T  *  *  S  S  L  *  R  R  K  F  N  R  E  H  Q  N  *  S  C  L  L  V  F  V  Y  T  K  L  F  P  K   : G  L  L  L  W  R  F  C  G  K  Q  H  Y  D  V  L  A  S  L  S  F  R :   W  *  *  E  *  T  V  R  K  S  I  R  S  P  Q  R  V  F  I  A  C  S  W  N  V  C  P  W  H  C  N  N  K  Y  A  L  C  Y  A  Q  S  T  W  E  W  K  S  Y  G  I  F  E  A  P  I  N  F  *  *  P  I  S  E  N  H  Y  *  V  L  N  *  Y  L  L  L  D  N  Y  S  C  *  *  M  Q  P  P  S  C  S  S  D  Q  M  L  S  *  N  C  C  R  E  *  I  R  G  I  V  R  S  Q  I  G  Y  K  Y  L  K  N  *  L  I  V  I  G  M  *  I  Y  *  R  W  F  C  E  Y  Y  H  F  A  L  V  N  R  L  L  Y  F  G  R  *  S  A  H  V  H  I  W  L  *  L  E  C  D  I  V  L  L  F  I  S  R  D  T  T  L  T  F  V  T  S  N  M  K  P  H  I  F  L  A  Q  I  V  G  C  A  K  A  *  K  P  S  *  S  *  I  S  *  C  G  A  *  W  S  Y  D  C  A  Y  G  F  L  Y  </second_frame>
            <third_frame>   K  E  *  *  Q  L  Q  T  R  S  K  A  L  S  R  E  G  N  S  T  E  N  T  K  I  K  A  A  Y  W  F  S  Y  T  R  S  S  S  R  K  :  V  C  Y  F  G  D  S  V  A  S  S  I  M  T  S  S  L  H  Y  H  S   : D  G  S  E  N  E  Q  S  E  N  Q  S  E  A  H  S  E  S  S  S  P  A  A  G  M  S  V  P  G  T  V  T  T  N  M  H  Y  V  M  P  N  Q  L  G  N  G  N  P  M  V  Y  L  K  H  Q  L  T  S  N  D  R  F  L  K  I  T  I  K  S  *  I  D  I  F  C  L  I  I  I  L  A  D  R  C  N  R  L  L  V  L  P  I  R  C  Y  H  R  T  A  V  V  N  K  L  G  V  L  S  E  V  K  *  V  T  N  I  *  R  I  D  *  L  *  *  V  C  R  Y  I  D  D  G  S  V  N  I  I  I  L  H  L  L  I  G  F  F  I  L  G  D  E  V  H  M  F  I  F  G  Y  N  *  N  V  I  S  F  F  S  S  L  A  E  T  P  L  *  H  L  *  H  P  T  *  N  R  I  Y  F  L  P  K  *  L  V  V  Q  K  P  E  S  Q  V  D  H  K  Y  L  N  V  G  H  N  G  A  M  I  V  L  M  D  S  C  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34271" stop="34378"/>
                    <exon start="35097" stop="35160"/>
                    <exon start="35912" stop="36120"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLQTRSKALSREGNSTENTKIKAAYWFSYTRSSSRKVCYFGDSVASSIMTSSLHYHSDGSENEQSENQSEAHSESSSPAAGMSVPGTVTTNMHYVMPNQLGNGNPMVYLKHQLTSNDRFLKITIKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="34241" e_stop="34378"/>
            <exon e_start="35097" e_stop="35160"/>
            <exon e_start="35912" e_stop="36057"/>
            <exon e_start="36425" e_stop="37228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.870" e_score="0.978"/>
          <exon-intron don_prob="0.856" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.871" acc_prob="0.897" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="34241" e_stop="34378" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.870">
            <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35097" e_stop="35160" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.856" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35912" e_stop="36057" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.871" acc_prob="0.897">
            <gDNA_intron_boundary i_start="36058" i_stop="36424" i_length="367"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="36425" e_stop="37228" e_length="804"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34241" stop="34378"/>
              <exon start="35097" stop="35160"/>
              <exon start="35912" stop="36057"/>
              <exon start="36425" stop="37228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566009" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAATAAAGGATGACAAAAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG : GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG : ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG : AGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTAT</gDNA_template>
            <first_frame> E  N  K  G  *  Q  K  E  *  *  Q  L  Q  T  R  S  K  A  L  S  R  E  G  N  S  T  E  N  T  K  I  K  A  A  Y  W  F  S  Y  T  R  S  S  S  R  K  :  V  C  Y  F  G  D  S  V  A  S  S  I  M  T  S  S  L  H  Y  H  S   : D  G  S  E  N  E  Q  S  E  N  Q  S  E  A  H  S  E  S  S  S  P  A  A  G  M  S  V  P  G  T  V  T  T  N  M  H  Y  V  M  P  N  Q  L  G  N  G  N  P  M  :  R  H  H  F  D  I  C  N  I  Q  H  E  T  A  Y  I  S  C  P  N  S  W  L  C  K  S  L  K  A  K  L  I  I  N  I  L  M  W  G  I  M  E  L  *  L  C  L  W  I  L  V  S  R  G  K  F  I  *  S  K  I  Y  Y  F  R  F  M  N  D  *  L  D  V  S  P  N  L  *  I  E  E  S  C  L  L  D  S  I  T  E  Y  I  G  V  V  Q  T  I  *  E  S  N  R  *  I  *  T  *  E  K  D  I  N  A  S  S  F  F  T  I  P  N  V  F  S  S  R  M  E  I  F  L  L  I  D  C  H  V  V  H  L  A  D  I  I  R  V  V  S  L  *  *  G  K  F  V  Y  F  L  K  I  G  N  D  L  F  V  L  I  A  F  D  *  L  M  T  F  S  R  *  E  L  E  V  R  T  T  N  K  N  I  Q  L  *  E  E  T  H  V  P  F  L  V  C  A  Y  T  K  S  I  K  F  L  N  G  D  V  V  T  L  R  I  D  I  S  *  L  L  D  I  Y  N  P  S  L  L  G  L  S  I  I  T  E  E  T  L  G  R  R  V  I  S  I  L  V  L  F  S  G  I  L  I  G  L  *  I  R  Y </first_frame>
            <second_frame>  K  I  K  D  D  K  K  N  S  N  S  Y  K  H  V  V  K  L  S  L  E  K  E  I  Q  Q  R  T  P  K  L  K  L  L  I  G  F  R  I  H  E  A  L  P  E  R :   F  V  T  L  E  I  L  W  Q  A  A  L  *  R  P  R  F  I  I  I  Q  :  M  V  V  R  M  N  S  Q  K  I  N  Q  K  P  T  A  S  L  H  R  L  Q  L  E  C  L  S  L  A  L  *  Q  Q  I  C  T  M  L  C  P  I  N  L  G  M  E  I  L  * :   D  T  T  L  T  F  V  T  S  N  M  K  P  H  I  F  L  A  Q  I  V  G  C  A  K  A  *  K  P  S  *  S  *  I  S  *  C  G  A  *  W  S  Y  D  C  A  Y  G  F  L  Y  L  E  V  N  S  Y  E  A  K  Y  I  I  L  D  L  *  M  I  S  W  M  F  H  R  T  Y  K  L  K  K  V  A  C  *  I  A  L  L  N  T  L  G  S  F  R  L  F  E  K  A  I  G  E  Y  E  P  K  K  R  I  L  M  H  Q  V  S  L  L  F  Q  M  F  L  V  V  G  W  K  Y  F  Y  L  *  I  V  M  L  Y  T  W  R  I  *  *  G  L  L  V  S  D  E  E  N  L  Y  I  S  *  R  *  G  M  T  F  L  C  L  L  L  L  I  S  *  *  L  S  L  D  R  S  *  K  L  E  P  L  I  R  T  F  S  C  E  K  K  H  M  Y  P  F  *  C  V  L  I  Q  R  A  *  S  F  *  M  V  M  L  *  H  *  E  *  I  F  H  D  F  S  I  F  T  I  H  H  C  W  V  C  Q  S  *  L  K  R  P  W  D  G  E  *  F  P  F  W  S  C  F  L  V  F  *  L  V  F  K  S  G   </second_frame>
            <third_frame>   K  *  R  M  T  K  R  I  V  T  V  T  N  T  *  *  S  S  L  *  R  R  K  F  N  R  E  H  Q  N  *  S  C  L  L  V  F  V  Y  T  K  L  F  P  K   : G  L  L  L  W  R  F  C  G  K  Q  H  Y  D  V  L  A  S  L  S  F  R :   W  *  *  E  *  T  V  R  K  S  I  R  S  P  Q  R  V  F  I  A  C  S  W  N  V  C  P  W  H  C  N  N  K  Y  A  L  C  Y  A  Q  S  T  W  E  W  K  S  Y   : E  T  P  L  *  H  L  *  H  P  T  *  N  R  I  Y  F  L  P  K  *  L  V  V  Q  K  P  E  S  Q  V  D  H  K  Y  L  N  V  G  H  N  G  A  M  I  V  L  M  D  S  C  I  *  R  *  I  H  M  K  Q  N  I  L  F  *  I  Y  E  *  L  V  G  C  F  T  E  P  I  N  *  R  K  L  L  V  R  *  H  Y  *  I  H  W  G  R  S  D  Y  L  R  K  Q  *  V  N  M  N  L  R  K  G  Y  *  C  I  K  F  L  Y  Y  S  K  C  F  *  *  *  D  G  N  I  S  T  Y  R  L  S  C  C  T  P  G  G  Y  N  K  G  C  *  S  L  M  R  K  I  C  I  F  L  E  D  R  E  *  P  F  C  A  Y  C  F  *  L  V  D  D  F  L  *  I  G  V  R  S  *  N  H  *  *  E  H  S  V  V  R  R  N  T  C  T  L  S  S  V  C  L  Y  K  E  H  K  V  F  E  W  *  C  C  N  I  K  N  R  Y  F  M  T  S  R  Y  L  Q  S  I  I  V  G  F  V  N  H  N  *  R  D  L  G  T  E  S  D  F  H  F  G  L  V  F  W  Y  F  D  W  S  L  N  Q  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34271" stop="34378"/>
                    <exon start="35097" stop="35160"/>
                    <exon start="35912" stop="36057"/>
                    <exon start="36425" stop="36556"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLQTRSKALSREGNSTENTKIKAAYWFSYTRSSSRKVCYFGDSVASSIMTSSLHYHSDGSENEQSENQSEAHSESSSPAAGMSVPGTVTTNMHYVMPNQLGNGNPMRHHFDICNIQHETAYISCPNSWLCKSLKAKLIINILMWGIMEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="42923" PGL_stop="40638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42917" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42917" e_stop="42832" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41020" e_stop="40638" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42917" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42913" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593237" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGG</gDNA_template>
            <first_frame> F  L  F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E  N  T  M  F  R  Q  F  C  A  M  S  *  R  F  V  T  H  *  I  V  G  L  P  K  I  M  Q  P  F  A  E  N  I  H  V  L  Q  A  S  F  W  F  L  V  L  R  F  M  N  S  A  L  S  Y  F  Y  I  V  Q  Y  *  F  H  I  S  *  *  N  Y  L  Q  C  L  </first_frame>
            <second_frame>  F  S  S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  T  L  C  L  D  N  F  V  L  *  V  E  D  L  L  L  I  E  L  L  G  F  R  K  L  C  N  L  L  L  K  I  F  M  S  S  R  P  L  F  G  S  *  Y  *  G  L  *  I  V  H  *  V  I  S  I  S  Y  N  I  S  F  I  F  P  N  K  I  I  C  N  A  W </second_frame>
            <third_frame>   S  L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K  H  Y  V  *  T  I  L  C  Y  E  L  K  I  C  Y  S  L  N  C  W  A  S  E  N  Y  A  T  F  C  *  K  Y  S  C  P  P  G  L  F  L  V  L  S  I  K  V  Y  E  *  C  I  E  L  F  L  Y  R  T  I  L  V  S  Y  F  L  I  K  L  F  A  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42923" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="41920"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42923" e_stop="42832" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42583" e_stop="41920" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42923" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="41920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578678" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCGCCTTTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAA</gDNA_template>
            <first_frame> S  A  F  L  F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G  Y  V  Y  S  F  S  M  D  L  V  I  M  Y  *  I  *  S  V  F  C  A  M  *  I  C  L  L  I  R  M  N  F  Y  Q  L  L  V  I  *  I  S  Y  *  N  I  L  L  R  V  L  C  G  I  V  C  E  V  V  E  *  F  Y  G  V  Y  I  *  I  V  V  F  Y  I  N  *  L  S  *  K  A  *  L  V  N  C  G  V  V  D  F  Q  N  T  R  Q  Q  *  C  T  S  L  A  I  V  Y  E  S  N  D  L  V  L  V  E  S  Q  Q  T  S  L  F  L  V  F  G  V  R  V  P  N  F  F  G  L  V  L  Y  G  K  S  K  L  S  Y  G  E  I  D  T  L  K  L  I  N  H  F  P  S  L  V  *  L  F  M  K  L  F  S  *  M  V  K  E  L  D  Q </first_frame>
            <second_frame>  A  P  F  S  S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E  G  M  C  I  L  L  A  W  I  *  L  L  C  I  E  Y  E  V  C  F  V  Q  C  E  Y  A  C  L  *  E  *  I  F  I  N  C  W  S  F  R  L  V  I  E  I  Y  C  S  G  F  C  V  V  *  F  V  K  L  S  N  D  S  T  V  F  I  F  E  *  L  C  F  T  *  T  N  S  A  E  K  H  S  *  *  I  V  V  L  *  I  F  K  I  L  G  S  S  S  V  R  V  *  Q  *  C  M  S  L  M  I  *  F  W  L  S  R  S  R  Q  V  C  F  W  F  L  E  Y  A  Y  Q  I  S  L  V  *  S  Y  M  G  K  A  S  S  H  M  V  K  L  I  H  *  S  *  L  I  I  F  Q  V  L  Y  S  C  L  *  N  Y  F  L  E  W  *  K  N  *  I   </second_frame>
            <third_frame>   R  L  S  L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  V  C  V  F  F  *  H  G  S  S  Y  Y  V  L  N  M  K  C  V  L  C  N  V  N  M  L  A  Y  K  N  E  F  L  S  T  V  G  H  L  D  *  L  L  K  Y  I  A  Q  G  S  V  W  Y  S  L  *  S  C  R  M  I  L  R  C  L  Y  L  N  S  C  V  L  H  K  L  T  Q  L  K  S  I  A  S  E  L  W  C  C  R  F  S  K  Y  S  A  A  V  V  Y  E  S  S  N  S  V  *  V  *  *  F  S  S  G  *  V  A  A  D  K  F  V  F  G  F  W  S  T  R  T  K  F  L  W  F  S  P  I  W  E  K  Q  A  L  I  W  *  N  *  Y  T  E  A  D  *  S  F  S  K  S  C  I  V  V  Y  E  I  I  F  L  N  G  K  R  I  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42431"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRVCVFF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42923" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42550"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAFLFIPVPSSVALASATPHPLTPNNFRRQWHLRRKRLLHRLPSPPSPVVASRRRRSGARESKRKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="56707" PGL_stop="59257"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56707" e_stop="56864"/>
            <exon e_start="56969" e_stop="57157"/>
            <exon e_start="57267" e_stop="57347"/>
            <exon e_start="57430" e_stop="57564"/>
            <exon e_start="57822" e_stop="58147"/>
            <exon e_start="58439" e_stop="58553"/>
            <exon e_start="58673" e_stop="58822"/>
            <exon e_start="59047" e_stop="59257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.819" e_score="0.984"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.988"/>
          <exon-intron don_prob="0.730" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.992" e_score="0.979"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="56707" e_stop="56864" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56865" i_stop="56968" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="56969" e_stop="57157" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.819">
            <gDNA_intron_boundary i_start="57158" i_stop="57266" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="57267" e_stop="57347" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57348" i_stop="57429" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57430" e_stop="57564" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.730" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57565" i_stop="57821" i_length="257"/>
          </intron>
          <exon e_serial="5" e_score="0.979">
            <gDNA_exon_boundary e_start="57822" e_stop="58147" e_length="326"/>
          </exon>
          <intron i_serial="5" don_prob="0.903" acc_prob="0.992">
            <gDNA_intron_boundary i_start="58148" i_stop="58438" i_length="291"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58439" e_stop="58553" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58554" i_stop="58672" i_length="119"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58673" e_stop="58822" e_length="150"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58823" i_stop="59046" i_length="224"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="59047" e_stop="59257" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56707" stop="56864"/>
              <exon start="56969" stop="57157"/>
              <exon start="57267" stop="57347"/>
              <exon start="57430" stop="57564"/>
              <exon start="57822" stop="58147"/>
              <exon start="58439" stop="58553"/>
              <exon start="58673" stop="58697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58015" stop="58147"/>
              <exon start="58439" stop="58553"/>
              <exon start="58673" stop="58822"/>
              <exon start="59047" stop="59257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595165" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATGGTTGGACAATTATGGGTAGTGATGGTGTTGATGATGTAACAATTGCTGTAAACTCATCACCAAGTAAATTCCTTGATGCACAATACAACACCTTGTCAATTCTCCCTACTTTTGGAGGAGTACTGTGTGCACGGGCATCAATGCTTCTTCAG : GATGTTTGCCCTGCTTTGCTTGTCCGTTTCCTTAGGGAGCACCGTTCGGAGTGGGCTGACTATGGAGTTGATGCTTACTCTTCTGCATCTCTTAAAGCCAGTCCTTATGCTGTCCCTTGTGCCAGACCTGGTGTCTTCCCCAGTAGCCAGGTCATTTTACCGCTTGCTCAGACTGTGGAACATGAGGAG : TTTCTTGAGGTTGTTCGGCTAGAGGGTCATGCTTTCTCTCCAGAGGACATAGCTTTATCGCGGGATATGTATTTGTTACAG : CTATGCAGTGGAGTTGAAGAGAATGCCACAGGTGCCTGTGCGCAGCTTGTTTTTGCACATATTGATGAATCTTTTGGTGATGATGCTCCATTGCTTCCATCTGGTTTCTCTGTCATTCCACTGGAGCCTAAATCA : GATTCTCCTAGTGCTGCTCGGACTTTAGATTTAGCTTCAACTCTTGAAGCTAGAACTGGTGGGACACGGCCAGCTGGTGAAGTTGAAGGAAGCAGTTACAACCATCGTTCAGTCTTGACAATTGCATTCCAGTTTGCCTTTGAGAATCACTATCGAGAAAATGTAGCTGCTATGGCTCGCCAATATGTACGAAGCATTGTAGGCTCTGTTCAGAGAGTTGCTATGGCTATTGCACCCTCTCGACTCTGCTCTCAGTTGACACCTAAATCCTTCCCTGGTTCACCAGAAGCTGTCACTTTGGCGAGATGGATTTGCAGGAGCTATAA : GAATCATACTGGTGGAGAATTGCTACAGATGGATTCTCAAGCTGCCGGTGATGCTGTTCTGAAGCAACTATGGCATCATACTGATTCAATAATGTGCTGCTCCGTCAAAATGAAT : GATTCTGCATTTTTTTCATTTGCAAACCAAGCAGGACTTGACATGCTTGAAACCACTCTAATAGCTCTTCAGGATATAATGCTTGATAAGATCCTAGATGAAGCTGGTCGAAAGGTCCTCCTTTCAGAGTTCCCCAAGATTATGCAGCAG : GGCTTTGCTTATCTGCCAGCAGGGCTATGTGTATCGAGCATGGGGAGGCCAGTGTCGTACGAGCAAGCTGTTGCATGGAAGGTCCTTAATGATGACAACTCCAATCACTGCCTAGCTTTCATGTTCACAAACTGGTCTTTTATTTAAGTTCAAAACATATGATCTGCGTAAGGCAGGCTGTGTGGCATTAGCTATCGACTCGTTACTAGCC</gDNA_template>
            <first_frame> M  M  V  G  Q  L  W  V  V  M  V  L  M  M  *  Q  L  L  *  T  H  H  Q  V  N  S  L  M  H  N  T  T  P  C  Q  F  S  L  L  L  E  E  Y  C  V  H  G  H  Q  C  F  F  R :   M  F  A  L  L  C  L  S  V  S  L  G  S  T  V  R  S  G  L  T  M  E  L  M  L  T  L  L  H  L  L  K  P  V  L  M  L  S  L  V  P  D  L  V  S  S  P  V  A  R  S  F  Y  R  L  L  R  L  W  N  M  R  S :   F  L  R  L  F  G  *  R  V  M  L  S  L  Q  R  T  *  L  Y  R  G  I  C  I  C  Y  S :   Y  A  V  E  L  K  R  M  P  Q  V  P  V  R  S  L  F  L  H  I  L  M  N  L  L  V  M  M  L  H  C  F  H  L  V  S  L  S  F  H  W  S  L  N  Q :   I  L  L  V  L  L  G  L  *  I  *  L  Q  L  L  K  L  E  L  V  G  H  G  Q  L  V  K  L  K  E  A  V  T  T  I  V  Q  S  *  Q  L  H  S  S  L  P  L  R  I  T  I  E  K  M  *  L  L  W  L  A  N  M  Y  E  A  L  *  A  L  F  R  E  L  L  W  L  L  H  P  L  D  S  A  L  S  *  H  L  N  P  S  L  V  H  Q  K  L  S  L  W  R  D  G  F  A  G  A  I   : R  I  I  L  V  E  N  C  Y  R  W  I  L  K  L  P  V  M  L  F  *  S  N  Y  G  I  I  L  I  Q  *  C  A  A  P  S  K  *  M :   I  L  H  F  F  H  L  Q  T  K  Q  D  L  T  C  L  K  P  L  *  *  L  F  R  I  *  C  L  I  R  S  *  M  K  L  V  E  R  S  S  F  Q  S  S  P  R  L  C  S  R :   A  L  L  I  C  Q  Q  G  Y  V  Y  R  A  W  G  G  Q  C  R  T  S  K  L  L  H  G  R  S  L  M  M  T  T  P  I  T  A  *  L  S  C  S  Q  T  G  L  L  F  K  F  K  T  Y  D  L  R  K  A  G  C  V  A  L  A  I  D  S  L  L  A </first_frame>
            <second_frame>  *  W  L  D  N  Y  G  *  *  W  C  *  *  C  N  N  C  C  K  L  I  T  K  *  I  P  *  C  T  I  Q  H  L  V  N  S  P  Y  F  W  R  S  T  V  C  T  G  I  N  A  S  S   : G  C  L  P  C  F  A  C  P  F  P  *  G  A  P  F  G  V  G  *  L  W  S  *  C  L  L  F  C  I  S  *  S  Q  S  L  C  C  P  L  C  Q  T  W  C  L  P  Q  *  P  G  H  F  T  A  C  S  D  C  G  T  *  G   : V  S  *  G  C  S  A  R  G  S  C  F  L  S  R  G  H  S  F  I  A  G  Y  V  F  V  T   : A  M  Q  W  S  *  R  E  C  H  R  C  L  C  A  A  C  F  C  T  Y  *  *  I  F  W  *  *  C  S  I  A  S  I  W  F  L  C  H  S  T  G  A  *  I   : R  F  S  *  C  C  S  D  F  R  F  S  F  N  S  *  S  *  N  W  W  D  T  A  S  W  *  S  *  R  K  Q  L  Q  P  S  F  S  L  D  N  C  I  P  V  C  L  *  E  S  L  S  R  K  C  S  C  Y  G  S  P  I  C  T  K  H  C  R  L  C  S  E  S  C  Y  G  Y  C  T  L  S  T  L  L  S  V  D  T  *  I  L  P  W  F  T  R  S  C  H  F  G  E  M  D  L  Q  E  L  *  :  E  S  Y  W  W  R  I  A  T  D  G  F  S  S  C  R  *  C  C  S  E  A  T  M  A  S  Y  *  F  N  N  V  L  L  R  Q  N  E   : *  F  C  I  F  F  I  C  K  P  S  R  T  *  H  A  *  N  H  S  N  S  S  S  G  Y  N  A  *  *  D  P  R  *  S  W  S  K  G  P  P  F  R  V  P  Q  D  Y  A  A   : G  L  C  L  S  A  S  R  A  M  C  I  E  H  G  E  A  S  V  V  R  A  S  C  C  M  E  G  P  *  *  *  Q  L  Q  S  L  P  S  F  H  V  H  K  L  V  F  Y  L  S  S  K  H  M  I  C  V  R  Q  A  V  W  H  *  L  S  T  R  Y  *   </second_frame>
            <third_frame>   D  G  W  T  I  M  G  S  D  G  V  D  D  V  T  I  A  V  N  S  S  P  S  K  F  L  D  A  Q  Y  N  T  L  S  I  L  P  T  F  G  G  V  L  C  A  R  A  S  M  L  L  Q  :  D  V  C  P  A  L  L  V  R  F  L  R  E  H  R  S  E  W  A  D  Y  G  V  D  A  Y  S  S  A  S  L  K  A  S  P  Y  A  V  P  C  A  R  P  G  V  F  P  S  S  Q  V  I  L  P  L  A  Q  T  V  E  H  E  E  :  F  L  E  V  V  R  L  E  G  H  A  F  S  P  E  D  I  A  L  S  R  D  M  Y  L  L  Q  :  L  C  S  G  V  E  E  N  A  T  G  A  C  A  Q  L  V  F  A  H  I  D  E  S  F  G  D  D  A  P  L  L  P  S  G  F  S  V  I  P  L  E  P  K  S  :  D  S  P  S  A  A  R  T  L  D  L  A  S  T  L  E  A  R  T  G  G  T  R  P  A  G  E  V  E  G  S  S  Y  N  H  R  S  V  L  T  I  A  F  Q  F  A  F  E  N  H  Y  R  E  N  V  A  A  M  A  R  Q  Y  V  R  S  I  V  G  S  V  Q  R  V  A  M  A  I  A  P  S  R  L  C  S  Q  L  T  P  K  S  F  P  G  S  P  E  A  V  T  L  A  R  W  I  C  R  S  Y  K :   N  H  T  G  G  E  L  L  Q  M  D  S  Q  A  A  G  D  A  V  L  K  Q  L  W  H  H  T  D  S  I  M  C  C  S  V  K  M  N  :  D  S  A  F  F  S  F  A  N  Q  A  G  L  D  M  L  E  T  T  L  I  A  L  Q  D  I  M  L  D  K  I  L  D  E  A  G  R  K  V  L  L  S  E  F  P  K  I  M  Q  Q  :  G  F  A  Y  L  P  A  G  L  C  V  S  S  M  G  R  P  V  S  Y  E  Q  A  V  A  W  K  V  L  N  D  D  N  S  N  H  C  L  A  F  M  F  T  N  W  S  F  I  *  V  Q  N  I  *  S  A  *  G  R  L  C  G  I  S  Y  R  L  V  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56709" stop="56864"/>
                    <exon start="56969" stop="57157"/>
                    <exon start="57267" stop="57347"/>
                    <exon start="57430" stop="57564"/>
                    <exon start="57822" stop="58147"/>
                    <exon start="58439" stop="58553"/>
                    <exon start="58673" stop="58822"/>
                    <exon start="59047" stop="59193"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1296</number_coding_nucleotides>
                  <number_encoded_amino_acids>432</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGWTIMGSDGVDDVTIAVNSSPSKFLDAQYNTLSILPTFGGVLCARASMLLQDVCPALLVRFLREHRSEWADYGVDAYSSASLKASPYAVPCARPGVFPSSQVILPLAQTVEHEEFLEVVRLEGHAFSPEDIALSRDMYLLQLCSGVEENATGACAQLVFAHIDESFGDDAPLLPSGFSVIPLEPKSDSPSAARTLDLASTLEARTGGTRPAGEVEGSSYNHRSVLTIAFQFAFENHYRENVAAMARQYVRSIVGSVQRVAMAIAPSRLCSQLTPKSFPGSPEAVTLARWICRSYKNHTGGELLQMDSQAAGDAVLKQLWHHTDSIMCCSVKMNDSAFFSFANQAGLDMLETTLIALQDIMLDKILDEAGRKVLLSEFPKIMQQGFAYLPAGLCVSSMGRPVSYEQAVAWKVLNDDNSNHCLAFMFTNWSFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="61435" PGL_stop="64969"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61435" e_stop="61589"/>
            <exon e_start="64206" e_stop="64358"/>
            <exon e_start="64553" e_stop="64969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61435" e_stop="61589" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61590" i_stop="64205" i_length="2616"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64206" e_stop="64358" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64359" i_stop="64552" i_length="194"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="64553" e_stop="64969" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61435" stop="61589"/>
              <exon start="64206" stop="64358"/>
              <exon start="64553" stop="64969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569489" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGTTTATGCAACATAGTTTAACCCCACTGAGAAAAAAATGGAGGAAACAGAGAAAGAATCCATCAAATCTGCATCCGAAGAGATTTCCAGTGAATTCAAAACCCTAATCAACGCTAAGGATTTGGATTCTTTGAAGCAATTGCAAAACCTCAT : ATTGGGACGGTTGCAGGACAGCAATGCAGTCCTTTCTCACTTCAATGAGTACTCAGAACATTGTTACGCAGAGGTCTCGGCAGATTTCTCTAGAAATACACGTCTCTTAAAATCTATGAAGTCAGACCTTGATTACATATTTCTGAAGTTGAG : GAACATGAAGGCAAAAATCATATCAACGTACCCAGATGCTCTTCCAGACAATACAACTATTCAGGCACTTGATCAAAGGCCTGATCTTGAAATGCCACAATAAGTAAGTTTGGTAATGTAAATGGTGGGGAAATGTTTGGCTTCTTCTATTTCTTCCTTTGCAAGTATGGAAAAGCTGGTTTAGGGTGGATAGTCTCAACTGTTTTTATCTGATAGTTCTGCAGCTGTATACTTCAAGTCGCGTTATGATAAGTTGTGGTCTCTCCTGAACAGTAGTTGTGCTTCGATTTGTGCTTTGCATATACCTTTTCGGGGGCAAGGCATGGATCTGTTTATCGTAAGGATTCTGAGTTTTCGATTAAAACTTTGATTGATGATGACATGAAAGAGAAGATATTTCGTTCTCGGAATGAAAAT</gDNA_template>
            <first_frame> M  V  Y  A  T  *  F  N  P  T  E  K  K  M  E  E  T  E  K  E  S  I  K  S  A  S  E  E  I  S  S  E  F  K  T  L  I  N  A  K  D  L  D  S  L  K  Q  L  Q  N  L  I :   L  G  R  L  Q  D  S  N  A  V  L  S  H  F  N  E  Y  S  E  H  C  Y  A  E  V  S  A  D  F  S  R  N  T  R  L  L  K  S  M  K  S  D  L  D  Y  I  F  L  K  L  R :   N  M  K  A  K  I  I  S  T  Y  P  D  A  L  P  D  N  T  T  I  Q  A  L  D  Q  R  P  D  L  E  M  P  Q  *  V  S  L  V  M  *  M  V  G  K  C  L  A  S  S  I  S  S  F  A  S  M  E  K  L  V  *  G  G  *  S  Q  L  F  L  S  D  S  S  A  A  V  Y  F  K  S  R  Y  D  K  L  W  S  L  L  N  S  S  C  A  S  I  C  A  L  H  I  P  F  R  G  Q  G  M  D  L  F  I  V  R  I  L  S  F  R  L  K  L  *  L  M  M  T  *  K  R  R  Y  F  V  L  G  M  K   </first_frame>
            <second_frame>  W  F  M  Q  H  S  L  T  P  L  R  K  K  W  R  K  Q  R  K  N  P  S  N  L  H  P  K  R  F  P  V  N  S  K  P  *  S  T  L  R  I  W  I  L  *  S  N  C  K  T  S   : Y  W  D  G  C  R  T  A  M  Q  S  F  L  T  S  M  S  T  Q  N  I  V  T  Q  R  S  R  Q  I  S  L  E  I  H  V  S  *  N  L  *  S  Q  T  L  I  T  Y  F  *  S  *   : G  T  *  R  Q  K  S  Y  Q  R  T  Q  M  L  F  Q  T  I  Q  L  F  R  H  L  I  K  G  L  I  L  K  C  H  N  K  *  V  W  *  C  K  W  W  G  N  V  W  L  L  L  F  L  P  L  Q  V  W  K  S  W  F  R  V  D  S  L  N  C  F  Y  L  I  V  L  Q  L  Y  T  S  S  R  V  M  I  S  C  G  L  S  *  T  V  V  V  L  R  F  V  L  C  I  Y  L  F  G  G  K  A  W  I  C  L  S  *  G  F  *  V  F  D  *  N  F  D  *  *  *  H  E  R  E  D  I  S  F  S  E  *  K  </second_frame>
            <third_frame>   G  L  C  N  I  V  *  P  H  *  E  K  N  G  G  N  R  E  R  I  H  Q  I  C  I  R  R  D  F  Q  *  I  Q  N  P  N  Q  R  *  G  F  G  F  F  E  A  I  A  K  P  H  :  I  G  T  V  A  G  Q  Q  C  S  P  F  S  L  Q  *  V  L  R  T  L  L  R  R  G  L  G  R  F  L  *  K  Y  T  S  L  K  I  Y  E  V  R  P  *  L  H  I  S  E  V  E  :  E  H  E  G  K  N  H  I  N  V  P  R  C  S  S  R  Q  Y  N  Y  S  G  T  *  S  K  A  *  S  *  N  A  T  I  S  K  F  G  N  V  N  G  G  E  M  F  G  F  F  Y  F  F  L  C  K  Y  G  K  A  G  L  G  W  I  V  S  T  V  F  I  *  *  F  C  S  C  I  L  Q  V  A  L  *  *  V  V  V  S  P  E  Q  *  L  C  F  D  L  C  F  A  Y  T  F  S  G  A  R  H  G  S  V  Y  R  K  D  S  E  F  S  I  K  T  L  I  D  D  D  M  K  E  K  I  F  R  S  R  N  E  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61453" stop="61589"/>
                    <exon start="64206" stop="64358"/>
                    <exon start="64553" stop="64655"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNPTEKKMEETEKESIKSASEEISSEFKTLINAKDLDSLKQLQNLILGRLQDSNAVLSHFNEYSEHCYAEVSADFSRNTRLLKSMKSDLDYIFLKLRNMKAKIISTYPDALPDNTTIQALDQRPDLEMPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="89662" PGL_stop="90955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89662" e_stop="90955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="89662" e_stop="90955" e_length="1294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89662" stop="90955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582565" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAAAGATGTTGAACTGTTGATTAACAATGGCGTGGGACACAGTTTTTACCTGAACAAAATTGCTGTTGATATGGACCCTGTTACTGGTTCTGCAACTGAAAAGCTTTTTGAAGCCATTGCAGAGTTCATCAACAAGCACTGATCAAATGAGAAATTAATTTACTATAAGATTTATGAGTGCAAATAAGCATGATATTTTATGAGAATTTTTTTGCATGCTGAACATCTGAAACGATTGTATCGTATTGTTAGTTTAAATATTCATGTTTGTTTTGATGATTGTTATTTTAACTATATTGTATCCAATTATAAAATATTAAAATTTCATAATAATCGATATGATCGGACTACATCTTTATCAT</gDNA_template>
            <first_frame> Y  T  Q  E  K  I  K  F  F  I  I  C  V  Y  F  T  F  *  K  F  P  K  M  V  H  D  K  Q  V  K  D  V  V  S  G  W  L  T  V  F  D  D  G  S  V  D  R  T  W  T  G  P  P  E  V  K  F  M  A  E  P  V  P  P  H  D  D  F  I  D  G  V  A  V  K  D  V  V  A  G  E  N  S  G  S  R  F  R  I  Y  L  P  E  R  N  D  S  S  V  D  K  L  P  V  I  L  H  F  H  G  G  G  F  C  I  S  Q  A  D  W  F  M  Y  Y  A  V  Y  T  R  L  A  R  V  A  N  A  I  V  V  S  V  F  L  P  L  A  P  E  H  R  L  P  A  A  C  D  A  G  F  A  G  L  L  W  L  R  D  V  S  R  E  Q  G  H  E  P  W  L  N  E  Y  A  D  F  N  R  V  F  L  I  G  D  S  S  G  G  N  V  V  H  Q  V  A  A  R  A  G  E  E  D  L  S  P  M  K  L  A  G  A  I  P  I  H  P  G  F  M  R  S  Q  R  S  K  S  E  L  E  Q  E  Q  T  P  F  L  T  L  D  M  V  D  K  F  M  E  L  A  L  P  I  G  S  T  K  D  H  P  I  T  C  P  M  G  D  A  A  P  A  V  E  E  L  K  L  P  P  Y  L  Y  C  V  A  E  K  D  L  I  K  D  T  E  M  E  F  Y  E  S  L  K  T  G  E  K  D  V  E  L  L  I  N  N  G  V  G  H  S  F  Y  L  N  K  I  A  V  D  M  D  P  V  T  G  S  A  T  E  K  L  F  E  A  I  A  E  F  I  N  K  H  *  S  N  E  K  L  I  Y  Y  K  I  Y  E  C  K  *  A  *  Y  F  M  R  I  F  L  H  A  E  H  L  K  R  L  Y  R  I  V  S  L  N  I  H  V  C  F  D  D  C  Y  F  N  Y  I  V  S  N  Y  K  I  L  K  F  H  N  N  R  Y  D  R  T  T  S  L  S  </first_frame>
            <second_frame>  I  P  K  K  K  *  N  F  S  *  F  V  F  I  L  L  F  R  N  F  L  K  W  F  M  I  S  K  L  K  M  *  F  P  V  G  L  Q  F  L  T  T  V  Q  *  T  G  H  G  L  V  H  L  K  S  S  S  W  L  S  L  F  H  R  M  T  T  S  L  T  A  L  P  S  K  M  W  S  P  G  R  I  P  V  V  V  S  V  F  T  Y  L  N  V  M  I  V  R  L  I  S  F  P  S  F  F  T  S  T  A  V  V  F  V  S  A  K  L  I  G  S  C  T  M  L  S  T  L  A  *  R  V  W  Q  T  L  L  L  F  P  S  S  Y  L  W  R  R  S  T  A  S  L  P  L  V  M  P  A  S  P  A  S  S  G  S  V  T  Y  P  G  N  K  V  T  S  P  G  S  T  N  T  P  I  S  T  A  Y  S  S  S  E  T  A  P  A  E  T  S  S  I  K  L  P  P  E  P  E  K  K  T  Y  L  R  *  S  S  P  A  Q  S  R  S  I  Q  A  S  C  D  P  S  E  A  N  R  S  *  N  R  N  K  P  P  F  *  P  *  I  W  W  I  N  L  W  N  W  L  Y  R  L  V  A  L  R  I  T  R  S  L  V  R  W  V  M  R  H  R  R  W  R  S  *  N  C  R  L  T  C  T  V  *  R  R  R  I  *  *  K  T  L  K  W  N  F  T  N  H  *  K  Q  G  K  K  M  L  N  C  *  L  T  M  A  W  D  T  V  F  T  *  T  K  L  L  L  I  W  T  L  L  L  V  L  Q  L  K  S  F  L  K  P  L  Q  S  S  S  T  S  T  D  Q  M  R  N  *  F  T  I  R  F  M  S  A  N  K  H  D  I  L  *  E  F  F  C  M  L  N  I  *  N  D  C  I  V  L  L  V  *  I  F  M  F  V  L  M  I  V  I  L  T  I  L  Y  P  I  I  K  Y  *  N  F  I  I  I  D  M  I  G  L  H  L  Y  H </second_frame>
            <third_frame>   Y  P  R  K  N  K  I  F  H  N  L  C  L  F  Y  F  L  E  I  S  *  N  G  S  *  *  A  S  *  R  C  S  F  R  L  A  Y  S  F  *  R  R  F  S  R  P  D  M  D  W  S  T  *  S  Q  V  H  G  *  A  C  S  T  A  *  R  L  H  *  R  R  C  R  Q  R  C  G  R  R  G  E  F  R  *  S  F  P  Y  L  L  T  *  T  *  *  *  F  G  *  *  A  S  R  H  S  S  L  P  R  R  W  F  L  Y  Q  P  S  *  L  V  H  V  L  C  C  L  H  S  L  S  A  C  G  K  R  Y  C  C  F  R  L  P  T  S  G  A  G  A  P  P  P  C  R  L  *  C  R  L  R  R  P  P  L  A  P  *  R  I  P  G  T  R  S  R  A  L  A  Q  R  I  R  R  F  Q  P  R  I  P  H  R  R  Q  L  R  R  K  R  R  P  S  S  C  R  Q  S  R  R  R  R  L  I  S  D  E  A  R  R  R  N  P  D  P  S  R  L  H  A  I  P  A  K  Q  I  G  A  R  T  G  T  N  P  L  S  N  L  R  Y  G  G  *  I  Y  G  T  G  F  T  D  W  *  H  *  G  S  P  D  H  L  S  D  G  *  C  G  T  G  G  G  G  A  E  I  A  A  L  L  V  L  C  S  G  E  G  S  D  K  R  H  *  N  G  I  L  R  I  T  E  N  R  G  K  R  C  *  T  V  D  *  Q  W  R  G  T  Q  F  L  P  E  Q  N  C  C  *  Y  G  P  C  Y  W  F  C  N  *  K  A  F  *  S  H  C  R  V  H  Q  Q  A  L  I  K  *  E  I  N  L  L  *  D  L  *  V  Q  I  S  M  I  F  Y  E  N  F  F  A  C  *  T  S  E  T  I  V  S  Y  C  *  F  K  Y  S  C  L  F  *  *  L  L  F  *  L  Y  C  I  Q  L  *  N  I  K  I  S  *  *  S  I  *  S  D  Y  I  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89716" stop="90735"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFPKMVHDKQVKDVVSGWLTVFDDGSVDRTWTGPPEVKFMAEPVPPHDDFIDGVAVKDVVAGENSGSRFRIYLPERNDSSVDKLPVILHFHGGGFCISQADWFMYYAVYTRLARVANAIVVSVFLPLAPEHRLPAACDAGFAGLLWLRDVSREQGHEPWLNEYADFNRVFLIGDSSGGNVVHQVAARAGEEDLSPMKLAGAIPIHPGFMRSQRSKSELEQEQTPFLTLDMVDKFMELALPIGSTKDHPITCPMGDAAPAVEELKLPPYLYCVAEKDLIKDTEMEFYESLKTGEKDVELLINNGVGHSFYLNKIAVDMDPVTGSATEKLFEAIAEFINKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="96143" PGL_stop="92111"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96143" e_stop="95211"/>
            <exon e_start="92639" e_stop="92111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="0.990"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="96143" e_stop="95211" e_length="933"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95210" i_stop="92640" i_length="2571"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="92639" e_stop="92111" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96143" stop="95211"/>
              <exon start="92639" stop="92111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTCATTTGGTCAATTTAGAATCTCCGATCGCTTTCCGTTACAATGCTCGGCGGCTTATACGGCGATCTCCCTCCGCCGTCGTCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTTGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAATTGAATATTTCAGGTGAGGAGGCATGGAGGCGGAGGGCGGCAATGAGTGGAGGTGGTGGAGGAGGAGGCAGTGCTCCCCCACGCTCGCCTTCGCCACCATCAGGGAATGAGTTTAGTATTGGGAGGTCAGAGAGTGGGGGTTTGGGATTGGGAGCGGAAGGAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGTTGGAAGGAGGGTCAGGGACTTGGAAAGCTGGAGCAGGGAATTACGACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGTGGGGTTATAGTGGCTAGTGAAGCAAAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAACAACAACAGGCACCTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATG : GTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATTGTCCAAATGTAACTTCTCTTTATTTTTTAACCGGGACTGTAATTTTGCAAGCTTGTTTAGCGTGCCTTACGTGATACATCTCCTTGTACCTATCGTCTCAAGTTTACACAAAGCTATGTATCGAAAAACTTCACATTATTACTCTTGAGGGAAATTGGTTTGGGTCCTTAGTTTTCATTGTAATGCAAGATATTAGAGAATTATTGTTTTACCGTTGGTTCA</gDNA_template>
            <first_frame> N  F  I  W  S  I  *  N  L  R  S  L  S  V  T  M  L  G  G  L  Y  G  D  L  P  P  P  S  S  S  G  D  D  D  K  P  T  N  A  T  T  A  N  V  W  S  S  S  A  K  M  A  P  S  A  L  R  K  P  F  A  P  P  Q  T  L  L  R  P  Q  P  K  P  K  P  Q  P  S  A  A  P  K  P  N  P  S  I  P  L  D  E  N  T  N  P  N  P  T  F  A  T  T  S  F  Q  P  A  L  V  A  V  T  S  S  V  L  E  E  Y  D  P  A  R  P  N  D  Y  E  D  Y  R  R  E  K  K  R  K  Q  M  E  A  E  V  R  R  E  L  E  E  R  E  R  K  E  R  E  R  E  R  E  E  K  E  K  R  E  K  E  R  E  L  N  I  S  G  E  E  A  W  R  R  R  A  A  M  S  G  G  G  G  G  G  G  S  A  P  P  R  S  P  S  P  P  S  G  N  E  F  S  I  G  R  S  E  S  G  G  L  G  L  G  A  E  G  K  M  T  A  A  Q  R  M  M  A  K  M  G  W  K  E  G  Q  G  L  G  K  L  E  Q  G  I  T  T  P  L  M  A  K  K  T  D  K  R  G  G  V  I  V  A  S  E  A  K  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  A  P  E  K  K  V  K  S  V  N  F  N  M  P  P  T  R  V  V  L  L  R  N  M  :  V  G  P  G  E  V  D  D  D  L  E  G  E  V  A  E  E  C  S  K  F  G  T  V  T  R  V  L  I  F  E  I  T  E  T  N  F  P  H  E  E  A  V  R  I  F  V  Q  F  E  R  A  E  H  A  T  K  A  L  I  E  L  E  G  R  F  F  G  G  R  I  V  H  A  C  F  Y  D  E  E  R  F  G  N  N  E  L  A  P  M  P  G  E  I  P  G  F  *  P  N  S  Y  C  P  N  V  T  S  L  Y  F  L  T  G  T  V  I  L  Q  A  C  L  A  C  L  T  *  Y  I  S  L  Y  L  S  S  Q  V  Y  T  K  L  C  I  E  K  L  H  I  I  T  L  E  G  N  W  F  G  S  L  V  F  I  V  M  Q  D  I  R  E  L  L  F  Y  R  W  F  </first_frame>
            <second_frame>  T  S  F  G  Q  F  R  I  S  D  R  F  P  L  Q  C  S  A  A  Y  T  A  I  S  L  R  R  R  P  P  A  T  M  T  S  Q  P  T  P  P  Q  L  M  C  G  P  A  V  L  R  W  L  L  Q  P  F  A  N  P  S  P  H  P  K  H  F  F  D  L  S  R  S  P  N  R  S  L  Q  Q  L  Q  N  L  I  H  R  S  L  L  T  R  T  L  I  Q  I  P  P  L  Q  R  R  R  F  N  Q  P  W  W  L  L  P  A  V  Y  *  K  N  T  T  R  L  G  R  M  I  T  K  I  I  G  G  R  R  R  G  S  K  W  R  L  R  C  G  E  S  W  K  K  E  R  E  R  R  G  S  E  R  G  R  K  R  R  R  E  K  K  R  E  N  *  I  F  Q  V  R  R  H  G  G  G  G  R  Q  *  V  E  V  V  E  E  E  A  V  L  P  H  A  R  L  R  H  H  Q  G  M  S  L  V  L  G  G  Q  R  V  G  V  W  D  W  E  R  K  E  R  *  Q  L  H  K  G  *  W  L  R  W  V  G  R  R  V  R  D  L  E  S  W  S  R  E  L  R  L  H  *  W  L  R  R  L  I  R  E  V  G  L  *  W  L  V  K  Q  S  S  S  S  N  S  S  S  N  N  N  N  N  N  R  H  L  K  R  R  L  R  V  S  I  S  I  C  L  Q  Q  G  S  C  C  L  G  I  W :   L  V  L  A  R  L  M  M  T  *  K  V  R  W  L  K  S  A  L  S  L  V  L  *  L  V  S  *  Y  L  R  L  Q  K  Q  I  S  L  M  K  K  L  F  G  Y  S  F  N  L  R  E  Q  N  T  Q  L  K  P  L  *  N  L  K  V  D  F  L  A  V  G  L  F  M  P  V  S  T  T  R  R  G  L  A  I  T  N  *  L  P  C  Q  E  K  F  L  A  F  D  Q  T  V  I  V  Q  M  *  L  L  F  I  F  *  P  G  L  *  F  C  K  L  V  *  R  A  L  R  D  T  S  P  C  T  Y  R  L  K  F  T  Q  S  Y  V  S  K  N  F  T  L  L  L  L  R  E  I  G  L  G  P  *  F  S  L  *  C  K  I  L  E  N  Y  C  F  T  V  G  S </second_frame>
            <third_frame>   L  H  L  V  N  L  E  S  P  I  A  F  R  Y  N  A  R  R  L  I  R  R  S  P  S  A  V  V  L  R  R  R  *  Q  A  N  Q  R  H  H  S  *  C  V  V  Q  Q  C  *  D  G  S  F  S  P  S  Q  T  L  R  P  T  P  N  T  S  S  T  S  A  E  A  Q  T  A  A  F  S  S  S  K  T  *  S  I  D  P  S  *  R  E  H  *  S  K  S  H  L  C  N  D  V  V  S  T  S  P  G  G  C  Y  Q  Q  C  I  R  R  I  R  P  G  S  A  E  *  L  R  R  L  S  E  G  E  E  E  E  A  N  G  G  *  G  A  E  R  V  G  R  K  R  E  K  G  E  G  A  R  E  G  G  K  G  E  E  R  K  R  E  R  I  E  Y  F  R  *  G  G  M  E  A  E  G  G  N  E  W  R  W  W  R  R  R  Q  C  S  P  T  L  A  F  A  T  I  R  E  *  V  *  Y  W  E  V  R  E  W  G  F  G  I  G  S  G  R  K  D  D  S  C  T  K  D  D  G  *  D  G  L  E  G  G  S  G  T  W  K  A  G  A  G  N  Y  D  S  I  D  G  *  E  D  *  *  E  R  W  G  Y  S  G  *  *  S  K  A  A  A  A  T  A  A  A  T  T  T  T  T  T  G  T  *  K  E  G  *  E  C  Q  F  Q  Y  A  S  N  K  G  R  A  A  *  E  Y   : G  W  S  W  R  G  *  *  *  P  R  R  *  G  G  *  R  V  L  *  V  W  Y  C  N  S  C  L  N  I  *  D  Y  R  N  K  F  P  S  *  R  S  C  S  D  I  R  S  I  *  E  S  R  T  R  N  *  S  P  Y  R  T  *  R  S  I  F  W  R  *  D  C  S  C  L  F  L  R  R  G  E  V  W  Q  *  R  I  S  S  H  A  R  R  N  S  W  L  L  T  K  Q  L  L  S  K  C  N  F  S  L  F  F  N  R  D  C  N  F  A  S  L  F  S  V  P  Y  V  I  H  L  L  V  P  I  V  S  S  L  H  K  A  M  Y  R  K  T  S  H  Y  Y  S  *  G  K  L  V  W  V  L  S  F  H  C  N  A  R  Y  *  R  I  I  V  L  P  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96122" stop="95211"/>
                    <exon start="92639" stop="92346"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLRSLSVTMLGGLYGDLPPPSSSGDDDKPTNATTANVWSSSAKMAPSALRKPFAPPQTLLRPQPKPKPQPSAAPKPNPSIPLDENTNPNPTFATTSFQPALVAVTSSVLEEYDPARPNDYEDYRREKKRKQMEAEVRRELEERERKEREREREEKEKREKERELNISGEEAWRRRAAMSGGGGGGGSAPPRSPSPPSGNEFSIGRSESGGLGLGAEGKMTAAQRMMAKMGWKEGQGLGKLEQGITTPLMAKKTDKRGGVIVASEAKQQQQQQQQQQQQQQAPEKKVKSVNFNMPPTRVVLLRNMVGPGEVDDDLEGEVAEECSKFGTVTRVLIFEITETNFPHEEAVRIFVQFERAEHATKALIELEGRFFGGRIVHACFYDEERFGNNELAPMPGEIPGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="97539" PGL_stop="98450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97539" e_stop="98450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="97539" e_stop="98450" e_length="912"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97539" stop="98450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582658" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAAATGACAAAATATGAGATGATATAAAACGAAGATCCTTTCAATGTGTACAGCAACACAACTCCCTTTGGCAGTTTGGACACATCTAGAGGCAGTTGTGTGTTAGTAATAAAAGTATGATCTACTGAATCACCTGCACTAAAGGCCTTTAATAAGTGAGAGGAAAGAGAGAGCATTCTTTACCTATGAGTTGAGGAAAGAATCATCTGTGGCTAAATCGACTTTTAAGCCCAGTAATATACATCAGGCTCCAAAACCACATATTAGTCCCAGCCGATAGCAAGCGCTGAGACTCTCATCAGTGCACCAGACCAATAGCAAAAGTGCCAGGTTTTTTCTCCCGCAACTGCACCTCGAGAATTCACAGTGGTTCCACACTTCACTTTTTGGTTTCTCCACTAGATGATCCCACCGTTCCAGCAGGGGGCTTCTCCACACTACTTGAACTAGCATTGCTAGCGCTTTGGCTGCCACCTGATTCTGGAGGCTGTGAGGTATCACCTGATGATCCTTCTTTCACATTACTGGTGCACACATTAGTGGGTGGAATATGAGCATTTTCTTCTTTTGACCGAGTAGTATCCTTTGGAGCTTCTGATTCCTTTTTGACGTCGCCATTAGGTAAAGGAGGCCCGACCACATCAGCAACACCAGCTGAATCCGAGGTTTGATTGGATGTTGCAATTGTATTAGAGTTTTCTCGCCATTCAACCCATTCAGGAGGCTTAATGGTTTCATTACTTGTAGCACGATGCAAGTCCTCAGACAAACTAGAGGGTGCAGGATGATCAGAACTTTGTTTTGGCTCAGGTTGATCAGATGAGGCAGTGTCTGCCAAATCATCATCTTCATCAGCAGCTGCATCATCATTTGTGCTGGGCCTAATAATATTAGTTTCTTCTGTGTCAG</gDNA_template>
            <first_frame> R  K  M  T  K  Y  E  M  I  *  N  E  D  P  F  N  V  Y  S  N  T  T  P  F  G  S  L  D  T  S  R  G  S  C  V  L  V  I  K  V  *  S  T  E  S  P  A  L  K  A  F  N  K  *  E  E  R  E  S  I  L  Y  L  *  V  E  E  R  I  I  C  G  *  I  D  F  *  A  Q  *  Y  T  S  G  S  K  T  T  Y  *  S  Q  P  I  A  S  A  E  T  L  I  S  A  P  D  Q  *  Q  K  C  Q  V  F  S  P  A  T  A  P  R  E  F  T  V  V  P  H  F  T  F  W  F  L  H  *  M  I  P  P  F  Q  Q  G  A  S  P  H  Y  L  N  *  H  C  *  R  F  G  C  H  L  I  L  E  A  V  R  Y  H  L  M  I  L  L  S  H  Y  W  C  T  H  *  W  V  E  Y  E  H  F  L  L  L  T  E  *  Y  P  L  E  L  L  I  P  F  *  R  R  H  *  V  K  E  A  R  P  H  Q  Q  H  Q  L  N  P  R  F  D  W  M  L  Q  L  Y  *  S  F  L  A  I  Q  P  I  Q  E  A  *  W  F  H  Y  L  *  H  D  A  S  P  Q  T  N  *  R  V  Q  D  D  Q  N  F  V  L  A  Q  V  D  Q  M  R  Q  C  L  P  N  H  H  L  H  Q  Q  L  H  H  H  L  C  W  A  *  *  Y  *  F  L  L  C  Q </first_frame>
            <second_frame>  E  K  *  Q  N  M  R  *  Y  K  T  K  I  L  S  M  C  T  A  T  Q  L  P  L  A  V  W  T  H  L  E  A  V  V  C  *  *  *  K  Y  D  L  L  N  H  L  H  *  R  P  L  I  S  E  R  K  E  R  A  F  F  T  Y  E  L  R  K  E  S  S  V  A  K  S  T  F  K  P  S  N  I  H  Q  A  P  K  P  H  I  S  P  S  R  *  Q  A  L  R  L  S  S  V  H  Q  T  N  S  K  S  A  R  F  F  L  P  Q  L  H  L  E  N  S  Q  W  F  H  T  S  L  F  G  F  S  T  R  *  S  H  R  S  S  R  G  L  L  H  T  T  *  T  S  I  A  S  A  L  A  A  T  *  F  W  R  L  *  G  I  T  *  *  S  F  F  H  I  T  G  A  H  I  S  G  W  N  M  S  I  F  F  F  *  P  S  S  I  L  W  S  F  *  F  L  F  D  V  A  I  R  *  R  R  P  D  H  I  S  N  T  S  *  I  R  G  L  I  G  C  C  N  C  I  R  V  F  S  P  F  N  P  F  R  R  L  N  G  F  I  T  C  S  T  M  Q  V  L  R  Q  T  R  G  C  R  M  I  R  T  L  F  W  L  R  L  I  R  *  G  S  V  C  Q  I  I  I  F  I  S  S  C  I  I  I  C  A  G  P  N  N  I  S  F  F  C  V   </second_frame>
            <third_frame>   K  N  D  K  I  *  D  D  I  K  R  R  S  F  Q  C  V  Q  Q  H  N  S  L  W  Q  F  G  H  I  *  R  Q  L  C  V  S  N  K  S  M  I  Y  *  I  T  C  T  K  G  L  *  *  V  R  G  K  R  E  H  S  L  P  M  S  *  G  K  N  H  L  W  L  N  R  L  L  S  P  V  I  Y  I  R  L  Q  N  H  I  L  V  P  A  D  S  K  R  *  D  S  H  Q  C  T  R  P  I  A  K  V  P  G  F  F  S  R  N  C  T  S  R  I  H  S  G  S  T  L  H  F  L  V  S  P  L  D  D  P  T  V  P  A  G  G  F  S  T  L  L  E  L  A  L  L  A  L  W  L  P  P  D  S  G  G  C  E  V  S  P  D  D  P  S  F  T  L  L  V  H  T  L  V  G  G  I  *  A  F  S  S  F  D  R  V  V  S  F  G  A  S  D  S  F  L  T  S  P  L  G  K  G  G  P  T  T  S  A  T  P  A  E  S  E  V  *  L  D  V  A  I  V  L  E  F  S  R  H  S  T  H  S  G  G  L  M  V  S  L  L  V  A  R  C  K  S  S  D  K  L  E  G  A  G  *  S  E  L  C  F  G  S  G  *  S  D  E  A  V  S  A  K  S  S  S  S  S  A  A  A  S  S  F  V  L  G  L  I  I  L  V  S  S  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97832" stop="98095"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSHQCTRPIAKVPGFFSRNCTSRIHSGSTLHFLVSPLDDPTVPAGGFSTLLELALLALWLPPDSGGCEVSPDDPSFTLLVHTLVGGI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="102383" PGL_stop="98665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102383" e_stop="102300"/>
            <exon e_start="102018" e_stop="101356"/>
            <exon e_start="100440" e_stop="100411"/>
            <exon e_start="98698" e_stop="98665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-intron don_prob="0.877" acc_prob="0.982" e_score="0.980"/>
          <exon-intron don_prob="0.982" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="102383" e_stop="102300" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102299" i_stop="102019" i_length="281"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="102018" e_stop="101356" e_length="663"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="0.982">
            <gDNA_intron_boundary i_start="101355" i_stop="100441" i_length="915"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100440" e_stop="100411" e_length="30"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.988">
            <gDNA_intron_boundary i_start="100410" i_stop="98699" i_length="1712"/>
          </intron>
          <exon e_serial="4" e_score="0.941">
            <gDNA_exon_boundary e_start="98698" e_stop="98665" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102383" stop="102300"/>
              <exon start="102018" stop="101356"/>
              <exon start="100440" stop="100411"/>
              <exon start="98698" stop="98665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGT : GTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATTGGGATGCAGAAAGTACGAAATATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGTATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAG : GCTCGTGGTTCACTTGAGCGGGATGATGAG : GATGTCTATTTTGATGATGAGTCTGCTGAAGTTG</gDNA_template>
            <first_frame> K  R  I  P  S  F  R  R  P  Q  A  V  D  I  F  L  V  N  Y  S  L  H  L  N  L  C  G  G  :  V  *  D  H  K  F  Q  K  P  F  F  L  S  C  L  T  *  I  G  M  Q  K  V  R  N  I  *  R  C  H  S  F  W  N  *  L  K  R  N  E  C  H  I  V  *  E  K  G  S  T  M  F  H  D  I  *  Q  I  V  G  L  E  C  L  I  Y  S  V  K  S  I  L  S  F  L  A  E  F  L  *  *  Y  L  P  Y  L  T  R  N  S  C  R  D  *  R  R  E  S  C  P  D  L  T  V  P  H  F  *  S  F  V  *  I  L  *  K  Y  A  I  F  S  F  E  L  D  T  T  F  *  R  K  Y  N  H  Y  I  L  S  N  T  N  G  I  F  S  S  F  H  W  I  D  H  D  C  S  L  L  V  F  I  P  A  *  Y  *  L  L  F  H  V  T  S  L  R  R  P  T  S  L  H  D  R  M  R  D  S  D  D  D  D  Y  Q  D  R  D  Y  D  V  A  A  L  A  N  N  L  S  Q  A  F  R  Y  G  I  Y  N  N  D  E  L  D  E  :  A  R  G  S  L  E  R  D  D  E  :  D  V  Y  F  D  D  E  S  A  E  V  </first_frame>
            <second_frame>  K  E  Y  L  L  S  G  G  L  R  Q  W  T  F  F  L  L  I  T  L  S  I  S  I  Y  V  A  V :   F  E  T  T  S  F  K  S  L  S  F  F  L  A  S  H  K  L  G  C  R  K  Y  E  I  Y  K  D  V  I  L  F  G  T  D  *  K  G  M  S  V  T  *  F  R  K  K  G  V  P  C  F  M  I  Y  N  K  L  W  A  L  N  V  S  F  I  L  *  K  A  F  *  V  S  *  P  N  S  S  N  D  I  Y  L  T  L  Q  E  I  L  A  A  I  E  G  E  N  H  A  Q  I  *  L  F  L  T  F  D  R  L  C  K  F  Y  K  S  T  P  F  F  H  L  S  W  T  Q  H  F  E  E  N  I  I  I  T  S  F  L  I  P  M  V  Y  F  H  L  F  I  G  L  I  M  I  V  V  C  *  S  L  Y  Q  H  N  I  D  F  Y  F  M  *  P  L  S  G  D  P  H  H  C  M  T  E  *  G  T  V  M  M  M  I  I  K  I  E  T  M  M  L  Q  L  W  Q  I  T  *  A  R  P  S  A  M  E  S  I  T  T  M  N  L  M  R :   L  V  V  H  L  S  G  M  M  R :   M  S  I  L  M  M  S  L  L  K  L </second_frame>
            <third_frame>   K  N  T  F  F  Q  E  A  S  G  S  G  H  F  S  C  *  L  L  S  P  S  Q  F  M  W  R   : C  L  R  P  Q  V  S  K  A  F  L  S  F  L  P  H  I  N  W  D  A  E  S  T  K  Y  I  K  M  S  F  F  L  E  L  T  K  K  E  *  V  S  H  S  L  G  K  R  E  Y  H  V  S  *  Y  I  T  N  C  G  P  *  M  S  H  L  F  C  K  K  H  F  E  F  P  S  R  I  P  L  M  I  F  T  L  P  Y  K  K  F  L  P  R  L  K  E  R  I  M  P  R  F  D  C  S  S  L  L  I  V  C  V  N  F  I  K  V  R  H  F  F  I  *  V  G  H  N  I  L  K  K  I  *  S  L  H  P  F  *  Y  Q  W  Y  I  F  I  F  S  L  D  *  S  *  L  *  F  V  S  L  Y  T  S  I  I  L  T  F  I  S  C  N  L  S  Q  E  T  H  I  T  A  *  P  N  E  G  Q  *  *  *  *  L  S  R  *  R  L  *  C  C  S  S  G  K  *  L  K  P  G  L  P  L  W  N  L  *  Q  R  *  T  *  *   : G  S  W  F  T  *  A  G  *  *   : G  C  L  F  *  *  *  V  C  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101523" stop="101356"/>
                    <exon start="100440" stop="100411"/>
                    <exon start="98698" stop="98666"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFHVTSLRRPTSLHDRMRDSDDDDYQDRDYDVAALANNLSQAFRYGIYNNDELDEARGSLERDDEDVYFDDESAEV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="118217" PGL_stop="111395"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118217" e_stop="117920"/>
            <exon e_start="114539" e_stop="114436"/>
            <exon e_start="113064" e_stop="112978"/>
            <exon e_start="112834" e_stop="112759"/>
            <exon e_start="112650" e_stop="112576"/>
            <exon e_start="112098" e_stop="112045"/>
            <exon e_start="111624" e_stop="111565"/>
            <exon e_start="111480" e_stop="111395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.837" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.955" e_score="0.973"/>
          <exon-intron don_prob="0.994" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.354" e_score="0.983"/>
          <exon-only e_score="0.895"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118217" e_stop="117920" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="117919" i_stop="114540" i_length="3380"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114539" e_stop="114436" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.837">
            <gDNA_intron_boundary i_start="114435" i_stop="113065" i_length="1371"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113064" e_stop="112978" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.964">
            <gDNA_intron_boundary i_start="112977" i_stop="112835" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112834" e_stop="112759" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.902">
            <gDNA_intron_boundary i_start="112758" i_stop="112651" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="112650" e_stop="112576" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.955">
            <gDNA_intron_boundary i_start="112575" i_stop="112099" i_length="477"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112098" e_stop="112045" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.964">
            <gDNA_intron_boundary i_start="112044" i_stop="111625" i_length="420"/>
          </intron>
          <exon e_serial="7" e_score="0.983">
            <gDNA_exon_boundary e_start="111624" e_stop="111565" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.967" acc_prob="0.354">
            <gDNA_intron_boundary i_start="111564" i_stop="111481" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="0.895">
            <gDNA_exon_boundary e_start="111480" e_stop="111395" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118217" stop="117920"/>
              <exon start="114539" stop="114436"/>
              <exon start="113064" stop="112978"/>
              <exon start="112834" stop="112759"/>
              <exon start="112650" stop="112576"/>
              <exon start="112098" stop="112045"/>
              <exon start="111624" stop="111565"/>
              <exon start="111480" stop="111395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCTTCTTTTTTCTTCTCAAAGGTCCCCAAAAAATACAGCAAGGAAAAAAAATGCTTCTTTCCACCGTCTCACAATTGGTGCTAAGTATAATTCTTGATAACAATTGAACCGAATCCAATCTTATCAAAGACTGCTCCCCACCTTTTTCTAGGGCTTCCTGGGTTCAAGATCATTGTTGGGGTTGTTTTCTTTTTGTTCCTAGATCCAAATTGTTGAAAATTCTCTTCTGGGTCGGTTCTTGATTCTGAAAAAATGGCTATGTTTTGGCGTATGGCTGGCCTCTCCACTGCTTCTCCA : GTGGAGACAATTTTGGATAAGGAAAATTTTGCACTGGATGAGCTCTTGGACGAGGATGAAATAATTCAAGAATGTAAAGCTCTTAATGGACGCCTTATTAACTT : TCTGCGAGAAAGAGCTCAAGTTGAACAACTTGTCAGGTACATAGTGGAAGAGGCTCCAGAAGATGCAGAGAAGAAACGAACTTTTAA : GTTTCCTTTTATTGCTTGTGAAATCTTTACATGCGAGGTGGACATAATTCTTAAAGCATTGGTTGAGAATGAGGAG : CTAATGAACCTGCTATTCTCATTTTTGGAACCTGAGCACACACATAGTACTCTGTTGGCCGGTTACTTCAGCAAG : GTTGTCATATGCTTGTTGCTGCGGAAAACATCAGCTTTTATGAACTACGTACAA : GCTCATCAAGATATTATCAAGAAGTTGGTTGATCTCATTGGAATTACATCCATCATGGAG : GTGTTAATCCGCCTAATTGGCACCGATGAACATTTGTATAGCAACTTCTCGGAGAACATGCAGTGGTTGGAAGATACAAATGTGCT</gDNA_template>
            <first_frame> G  F  F  F  L  L  K  G  P  Q  K  I  Q  Q  G  K  K  M  L  L  S  T  V  S  Q  L  V  L  S  I  I  L  D  N  N  *  T  E  S  N  L  I  K  D  C  S  P  P  F  S  R  A  S  W  V  Q  D  H  C  W  G  C  F  L  F  V  P  R  S  K  L  L  K  I  L  F  W  V  G  S  *  F  *  K  N  G  Y  V  L  A  Y  G  W  P  L  H  C  F  S   : S  G  D  N  F  G  *  G  K  F  C  T  G  *  A  L  G  R  G  *  N  N  S  R  M  *  S  S  *  W  T  P  Y  *  L  :  S  A  R  K  S  S  S  *  T  T  C  Q  V  H  S  G  R  G  S  R  R  C  R  E  E  T  N  F  *  :  V  S  F  Y  C  L  *  N  L  Y  M  R  G  G  H  N  S  *  S  I  G  *  E  *  G   : A  N  E  P  A  I  L  I  F  G  T  *  A  H  T  *  Y  S  V  G  R  L  L  Q  Q   : G  C  H  M  L  V  A  A  E  N  I  S  F  Y  E  L  R  T   : S  S  S  R  Y  Y  Q  E  V  G  *  S  H  W  N  Y  I  H  H  G   : G  V  N  P  P  N  W  H  R  *  T  F  V  *  Q  L  L  G  E  H  A  V  V  G  R  Y  K  C  A </first_frame>
            <second_frame>  A  S  F  F  F  S  K  V  P  K  K  Y  S  K  E  K  K  C  F  F  P  P  S  H  N  W  C  *  V  *  F  L  I  T  I  E  P  N  P  I  L  S  K  T  A  P  H  L  F  L  G  L  P  G  F  K  I  I  V  G  V  V  F  F  L  F  L  D  P  N  C  *  K  F  S  S  G  S  V  L  D  S  E  K  M  A  M  F  W  R  M  A  G  L  S  T  A  S  P  :  V  E  T  I  L  D  K  E  N  F  A  L  D  E  L  L  D  E  D  E  I  I  Q  E  C  K  A  L  N  G  R  L  I  N  F :   L  R  E  R  A  Q  V  E  Q  L  V  R  Y  I  V  E  E  A  P  E  D  A  E  K  K  R  T  F  K :   F  P  F  I  A  C  E  I  F  T  C  E  V  D  I  I  L  K  A  L  V  E  N  E  E  :  L  M  N  L  L  F  S  F  L  E  P  E  H  T  H  S  T  L  L  A  G  Y  F  S  K  :  V  V  I  C  L  L  L  R  K  T  S  A  F  M  N  Y  V  Q  :  A  H  Q  D  I  I  K  K  L  V  D  L  I  G  I  T  S  I  M  E  :  V  L  I  R  L  I  G  T  D  E  H  L  Y  S  N  F  S  E  N  M  Q  W  L  E  D  T  N  V   </second_frame>
            <third_frame>   L  L  F  S  S  Q  R  S  P  K  N  T  A  R  K  K  N  A  S  F  H  R  L  T  I  G  A  K  Y  N  S  *  *  Q  L  N  R  I  Q  S  Y  Q  R  L  L  P  T  F  F  *  G  F  L  G  S  R  S  L  L  G  L  F  S  F  C  S  *  I  Q  I  V  E  N  S  L  L  G  R  F  L  I  L  K  K  W  L  C  F  G  V  W  L  A  S  P  L  L  L  Q :   W  R  Q  F  W  I  R  K  I  L  H  W  M  S  S  W  T  R  M  K  *  F  K  N  V  K  L  L  M  D  A  L  L  T   : F  C  E  K  E  L  K  L  N  N  L  S  G  T  *  W  K  R  L  Q  K  M  Q  R  R  N  E  L  L   : S  F  L  L  L  L  V  K  S  L  H  A  R  W  T  *  F  L  K  H  W  L  R  M  R  S :   *  *  T  C  Y  S  H  F  W  N  L  S  T  H  I  V  L  C  W  P  V  T  S  A  R :   L  S  Y  A  C  C  C  G  K  H  Q  L  L  *  T  T  Y  K :   L  I  K  I  L  S  R  S  W  L  I  S  L  E  L  H  P  S  W  R :   C  *  S  A  *  L  A  P  M  N  I  C  I  A  T  S  R  R  T  C  S  G  W  K  I  Q  M  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118000" stop="117920"/>
                    <exon start="114539" stop="114436"/>
                    <exon start="113064" stop="112978"/>
                    <exon start="112834" stop="112759"/>
                    <exon start="112650" stop="112576"/>
                    <exon start="112098" stop="112045"/>
                    <exon start="111624" stop="111565"/>
                    <exon start="111480" stop="111397"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFSSGSVLDSEKMAMFWRMAGLSTASPVETILDKENFALDELLDEDEIIQECKALNGRLINFLRERAQVEQLVRYIVEEAPEDAEKKRTFKFPFIACEIFTCEVDIILKALVENEELMNLLFSFLEPEHTHSTLLAGYFSKVVICLLLRKTSAFMNYVQAHQDIIKKLVDLIGITSIMEVLIRLIGTDEHLYSNFSENMQWLEDTNV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 41 chains have been computed
$ 
$ memory statistics:
$ 48712 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 2117 bytes was the average size of a spliced alignment
$ 24960 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1560 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 46 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:35:16
-->
