<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:29:07"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340990" ref_strand="+" ref_description="SGN-E340990 [cTOF-5-J19]">
      <seq>attatggagattcttaagctgatcaaaagggaattaactggagagtctaccaagctagtaaaatcatctcctgcttaagataaagagtctaattcccggtgttttttcattccaatcctgctggtcctagtttgaagttcaacacgatgctagaaaaacagattttagttcagcgggacagacgacatgtagtttgtagcaacttgaaatagcacaaagttcttgaagtttcaactgacctgtcttgtagagggtgagatcctagttagttctgtatattgtgtatcatcatcagacaggaaaatccccacatcttagttgcagctgtgaaattttaggtacattttgtcagctttcttgtatatagagaatcaaaatgtacagcctactttaggctagtttagttttatggaaatccatgtgtttatcatttttctttattgaataattcaattctggaaaaaaaaaanaaaaanaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="825" stop="2922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1125" g_stop="1203" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1204" i_stop="2241" i_length="1038">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2242" g_stop="2622" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="461" r_length="382" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="475"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E340990" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1125" e_stop="1203"/>
          <exon e_start="2242" e_stop="2622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGGAGATTCTTAAGCTGATCAAAAGGGAATTAACTGGAGAGTCTACCAAGCTAGTAAAATCATCTCCTGCTTAAGGTAATTTTTCTTCTACTAAAGTATAGTTTTCACTTTTCAGTGGGTGATATTGCGTAAAATTTGGTTCCATTGTTGTTAGCTAGATCAGCCTCTTAAGACAGACCTTTATGAGAATCTAACTATTGGTATTTTTCTTGAATACTAAATTGATGTTAGTTACTTTCTCTATTCTAATTAAGTAGCACTTTTTCTTTTTAATTTGTTCTAAAATGAATGACACCTTTTTATATCTGCTTCTCATTTTGCCTTTAGTGACATGGTCTTGTACCCAAAGAAATGTCAAGGCATGTTTATGTCCCCCGCCAAGTTGTAACGGTACTTTTGGTATATGTGCTAACGGTCTTTCTGAGTTTCATAAACTCCAGACCAAGTCAAACGTTGCCAGCTAAAATGAATAGAGGGAGTAATGAAAACATTTGCGGAAAAACTGTCACCTACTCAAGAAGAGGGGAACTAAGGACAGCAAATTAACTGCTTTGTATAACCATGCACCATTATTCCTCAGGCATTTCTCTAACAAAGAAAAGAAACTGAAAAGGGGAGGAAAATAGATGAGTTGACAAAAAAAATTAAAGGTTGAGAAAACTAGGGCTGATGAAGAAAGGTGTGATCTTTAAAGGATTAGGGCGGAGGAAAAAAAGGTTGCTTTTGTAAATTCTAAAGAGGAATCAGAAAATGAAAAAAAATCAAAGGTGGAGTTGGTGAAATCGGAGTATGAAATAAGCTGCTGGTGGTAGAAAGAGGGGACACATAAGAGAAAAGACGTGAAACTCACCCGTGGCTTTTAGAACAAAAGGATCTTGCAGAGCTAACTGCAAAATAGCTATTGATAAGAAAAGTGTCATGCTGCAGATTTTTTCATGGCAGTTAAACAAGATAAAAATTGGAAACATCACAAAAAACAGAAGTATAAAATAACAGGTGCAGTAGCTTGTAATCATGCCTACTGCAAGACATCAGAACATATCTCAGGTTTTACTTAAACTGTACCTTCCATAAATCAACCAGTCCTTGACTCTTGTTTCTTTTGTTGAACAGATAAAGAGTCTAATTCCCGGTGTTTTTTCATTCCAATCCTGCTGGTCCTAGTTTGAAGTTCAACACGATGCTAGAAAAACAGATTTTAGTTCAGCGGGACAGACGACATGTAGTTTGTAGCAACTTGAAATAGCACAAAGTTCTTGAAGTTTCAACTGACCTGTCTTGTAGAGGGTGAGATCCTAGTTAGTTCTGTATATTGTGTATCATCATCGGACAGGAAAATCCCCACATCTTAGTTGCAGCTGTGAAATTTTAGGTACATTTTGTCAGCTTTCTTGTATATAGAGAATCAAAATGTACAGCCTACTTTAGGCTAGTTTAG--TTATGGAAATCCATGTGTTTATCATTTTTCTTTTATTGAATAATTCAATTCTGGAA</genome_strand>
        <mrna_strand>ATTATGGAGATTCTTAAGCTGATCAAAAGGGAATTAACTGGAGAGTCTACCAAGCTAGTAAAATCATCTCCTGCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTCTAATTCCCGGTGTTTTTTCATTCCAATCCTGCTGGTCCTAGTTTGAAGTTCAACACGATGCTAGAAAAACAGATTTTAGTTCAGCGGGACAGACGACATGTAGTTTGTAGCAACTTGAAATAGCACAAAGTTCTTGAAGTTTCAACTGACCTGTCTTGTAGAGGGTGAGATCCTAGTTAGTTCTGTATATTGTGTATCATCATCAGACAGGAAAATCCCCACATCTTAGTTGCAGCTGTGAAATTTTAGGTACATTTTGTCAGCTTTCTTGTATATAGAGAATCAAAATGTACAGCCTACTTTAGGCTAGTTTAGTTTTATGGAAATCCATGTGTTTATCATTTTTC-TTTATTGAATAATTCAATTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321644" ref_strand="+" ref_description="SGN-E321644 [cTOB-25-B4]">
      <seq>gagattcgggtgatcagcacgagcagagtcaaagtactgtatacagtcttggactaaaggttgaatacacggtatgtaaccaggtgagccttctgagtaaccgtgaccttgtaggtcaagagaacaaacgaaaaatccagctttcaccatagctactgcatttagctcaaaaagccaactgctttcggacgtataaccatgaatcatgcctacaagacctcttaactgattacttgattcaggctgccaagattgtgtgaatatcttcatgttttgtttgtttaacatgaaactttgtttgtgcatgattttatgttgcttgtaaaactcttctcttgtcaagttaccataagggctgttctcattagattggaaaattgggtgagacattgtaatgactgagtttgtctgtttgtgttttgtgtttgtgtttgttgatatatacacacaaatgtgcattatgatatatctatgttgttcaagagactgataggggttgggagtttagcctcccaactgtttcatgctggggtaataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="7363" stop="6218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7063" g_stop="6518" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E321644" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7063" e_stop="6518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTCGGGTGATCAGCACGAGCAGAGTCAAAGTACTGTATACAGTCTTGGACTAAAGGTTGAATACACGGTATGTAACCAGGTGAGCCTTCTGAGTAACCGTGACCTTGTAGGTCAAGAGAACAAACGAAAAATCCAGCTTTCACCATAGCTACTGCATTTAGCTCAAAAAGCCAACTGCTTTCGGACGTATAACCATGAATCATGCCTACAAGACCTCTTAACTGATTACTTGATTCAGGCTGCCAAGATTGTGTGAATATCTTCATGTTTTGTTTGTTTAACATGAAACTTTGTTTGTGCATGATTTTATGTTGCTTGTAAAACTCTTCTCTTGTCAAGTTACCATAAGGGCTGTTCTCATTAGATTGGAAAATTGGGTGAGACATTGTAATGACTGAGTTTGTCTGTTTGTGTTTTGTGTTTGTGTTTGTGTTTGTTGATATATACACACAAATGTGCATTATGATATATCTATGTTGTTCAAGAGTACTGATA-GGGTTGGGAGTTTAGCCTCCCAACTGTTTCATGCTGGGGTAATAAAT</genome_strand>
        <mrna_strand>GAGATTCGGGTGATCAGCACGAGCAGAGTCAAAGTACTGTATACAGTCTTGGACTAAAGGTTGAATACACGGTATGTAACCAGGTGAGCCTTCTGAGTAACCGTGACCTTGTAGGTCAAGAGAACAAACGAAAAATCCAGCTTTCACCATAGCTACTGCATTTAGCTCAAAAAGCCAACTGCTTTCGGACGTATAACCATGAATCATGCCTACAAGACCTCTTAACTGATTACTTGATTCAGGCTGCCAAGATTGTGTGAATATCTTCATGTTTTGTTTGTTTAACATGAAACTTTGTTTGTGCATGATTTTATGTTGCTTGTAAAACTCTTCTCTTGTCAAGTTACCATAAGGGCTGTTCTCATTAGATTGGAAAATTGGGTGAGACATTGTAATGACTGAGTTTGTCTG-TT-TG---TGT-TTTGTGTTTGTGTTTGTTGATATATACACACAAATGTGCATTATGATATATCTATGTTGTTCAAGAG-ACTGATAGGGGTTGGGAGTTTAGCCTCCCAACTGTTTCATGCTGGGGTAATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252723" ref_strand="+" ref_description="SGN-E252723 [cLEG-16-M22]">
      <seq>tgacaagagaagagttttacaagcaacataaaatcatgcacaaacaaagtttcatgttaaacaaacaaaacatgaagatattcacacaatcttggcagcctgaatcaagtaatcagttaagaggtcttgtaggcatgattcatggttatacgtccgaaagcagttggctttttgagctaaatgcagtagctatggtgaaagctggatttttcgtttgttctcttgacctacaaggtcacggttactcagaaggctcacctggttacataccgtgtattcaacctttagtccaagactgtatacagtactttgactctgctcgtgctgatcacccgaatctccctgctttcctgtatggtgagtcattaggtggtgcaatttctacactcatatgtctaaggcaaaagaatgtatggaatggtctgatgttaagtggaccgatgtttggagtgtcaaagaaatacagacctgtttggccactggagaagctactaccgttggccgccttcatagctccatcatggaggattgtgatcaccaaaccacctgcatctatatcatacaaagaggagtggaagagaaagattatctcaaaaagtccaaatcgcctggcttctgagaagccaccagctgccactgcactagagcttctgaaagtctgtgagtatatacagaggaactctcatgaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="6423" stop="7715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6723" g_stop="7415" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E252723" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6723" e_stop="7415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAAGAGAAGAGTTTTACAAGCAACATAAAATCATGCACAAACAAAGTTTCATGTTAAACAAACAAAACATGAAGATATTCACACAATCTTGGCAGCCTGAATCAAGTAATCAGTTAAGAGGTCTTGTAGGCATGATTCATGGTTATACGTCCGAAAGCAGTTGGCTTTTTGAGCTAAATGCAGTAGCTATGGTGAAAGCTGGATTTTTCGTTTGTTCTCTTGACCTACAAGGTCACGGTTACTCAGAAGGCTCACCTGGTTACATACCGTGTATTCAACCTTTAGTCCAAGACTGTATACAGTACTTTGACTCTGCTCGTGCTGATCACCCGAATCTCCCTGCTTTCCTGTATGGTGAGTCATTAGGTGGTGCAATTTCTACACTCATATGTCTAAGGCAAAAGAATGTATGGAATGGTCTGATGTTAAGTGGACCGATGTTTGGAGTGTCAAAGAAATACAGACCTGTTTGGCCACTGGAGAAGCTACTACCGTTGGCCGCCTTCATAGCTCCATCATGGAGGATTGTGATCACCAAACCACCTGCATCTATATCATACAAAGAGGAGTGGAAGAGAAAGATTATCTCAAAAAGTCCAAATCGCCTGGCTTCCGAGAAGCCACCAGCTGCCACTGCACTAGAGCTTCTGAAAGTCTGTGAGTATATACAGAGGAACTCTCATGAACTAC</genome_strand>
        <mrna_strand>TGACAAGAGAAGAGTTTTACAAGCAACATAAAATCATGCACAAACAAAGTTTCATGTTAAACAAACAAAACATGAAGATATTCACACAATCTTGGCAGCCTGAATCAAGTAATCAGTTAAGAGGTCTTGTAGGCATGATTCATGGTTATACGTCCGAAAGCAGTTGGCTTTTTGAGCTAAATGCAGTAGCTATGGTGAAAGCTGGATTTTTCGTTTGTTCTCTTGACCTACAAGGTCACGGTTACTCAGAAGGCTCACCTGGTTACATACCGTGTATTCAACCTTTAGTCCAAGACTGTATACAGTACTTTGACTCTGCTCGTGCTGATCACCCGAATCTCCCTGCTTTCCTGTATGGTGAGTCATTAGGTGGTGCAATTTCTACACTCATATGTCTAAGGCAAAAGAATGTATGGAATGGTCTGATGTTAAGTGGACCGATGTTTGGAGTGTCAAAGAAATACAGACCTGTTTGGCCACTGGAGAAGCTACTACCGTTGGCCGCCTTCATAGCTCCATCATGGAGGATTGTGATCACCAAACCACCTGCATCTATATCATACAAAGAGGAGTGGAAGAGAAAGATTATCTCAAAAAGTCCAAATCGCCTGGCTTCTGAGAAGCCACCAGCTGCCACTGCACTAGAGCTTCTGAAAGTCTGTGAGTATATACAGAGGAACTCTCATGAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317392" ref_strand="+" ref_description="SGN-E317392 [cTOA-28-K24]">
      <seq>gatgatgtctatttacacactgcaccgctgtgccatattggtggtatatcatcagccctggccatgctaatggcaggaggtcgtcatattttactaccaaagtttgaagctaaattggctgttgaatccatagaccagcattgtgttacttctctcattacagttccagctatgatgactgatctaatctctttttataagacaaagcacatatctgtagggtccaaatctgtgaagaaggttcttaatggagctgggggtctttcatctagtcttatcaaaaatgtgattgagatattcccgagggctaaacttctttcagcttacggaatgaccgaggcgtgttcttctctgactttcatgactctttatgacccggcgagagagagttgtatccagcattcttatgccaacagctccaatttggcacataaaccagatggtacctgtgttggaaagcctgctccacatattgaaataaggattgctggggatgattcgtcttgtatagggaggattttgacacgaggtccccatttaatgcttggatactgggatcaaatgccaagcaataattcttctccagttgatgaatgttggcttgacactggtgatatagggcatatagatgattgtggaaatatctggctcgttgggcgcttgaagggccgaataaagagtgggggagaaaatgtttatcctgaagaagtggaagctgtcttattgcagcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="10618" stop="8440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10419" g_stop="10414" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10413" i_stop="10314" i_length="100">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10313" g_stop="10120" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="200" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10119" i_stop="9784" i_length="336">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9783" g_stop="9656" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="328" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9655" i_stop="9361" i_length="295">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9360" g_stop="8981" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="708" r_length="380" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8980" i_stop="8766" i_length="215">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8765" g_stop="8740" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="734" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E317392" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10419" e_stop="10414"/>
          <exon e_start="10313" e_stop="10120"/>
          <exon e_start="9783" e_stop="9656"/>
          <exon e_start="9360" e_stop="8981"/>
          <exon e_start="8765" e_stop="8740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGTATGCTTGTCTACTGTGATAATATGGAAGTTGCAACCTAGATAGATGATCCAAATGTTTGAAACACATGCCAATTTGATTCATGTTATTTTTCTTGCAGGTCTATTTACACACTGCACCGCTGTGCCATATTGGTGGTATATCATCAGCCCTGGCCATGCTAATGGCAGGAGGTCGTCATATTTTACTACCAAAGTTTGAAGCTAAATTGGCTGTTGAATCCATAGACCAGCATAGTGTTACTTCTCTCATTACAGTTCCAGCTATGATGACTGATCTAATCTCTTTTTATAAGTAAAGCACTCAGCTGTTCTACTTGATGCAAAGACGAGTTTCAATTGGATTTATCTTTTGAACAAAGTTGAAGTGAATAATTACTGCATGGGCATACATATTACTGGATTATCAAGCTTTATCCTTCAAAGTTTACTACCAATATCAGTTTATAGCATTATTTCCTTTTGGTTTTACAAGGAATACTTTTTGTGATGTCCTGTTCTAAGATTAAAAGAAATTTGTTTCTCTTTTGGCGATTGATTATTTTCTAGGTTTCTCTGCATGGACAAATTAGCACATGCCACTTTGTTCATGATAACTGCAATTATTTGATTCAACTTTCACTTGTGATAGGACAAAGCACATATCTGTAGGGTCCAAATCTGTGAAGAAGGTTCTTAATGGAGCTGGGGGTCTTTCATCTAGTCTTATCAAAAATGTGATTGAGATATTCCCGAGGGCTAAACTTCTTTCAGCTTACGGTATGTTGGTCTTGTAACTGCTTTGACATACTTTCCCTTTTTCTCCATACTTATTTTTTTCTGAACAAATATTCTGTTGATAGCAGAAGATTGCAAGTTATTAAGTGGTCTTCCTGATGTATGACATATATCATGAACTACACATTGTGTTAGCATTACAAATTTATAGTGGTACAAGTCCGAACCTTCTTGGTGTATTCTGTGAAGTTAGCTTCATGAATATCTACTCTTCCCTAAACAAATCATTCTGTTTTAGTTGTACTCTCCTGATAAGTGTTCTTTAAATGTTTTGCAGGAATGACCGAGGCGTGTTCTTCTCTGACTTTCATGACTCTTTATGACCCGGCGAGAGAGAGTTGTATCCAGCATTCTTATGCCAACAGCTCCAATTTGGCACATAAACCAGATGGTATCTGTGTTGGAAAGCCTGCTCCACATATTGAAATAAGGATTGCTGGGGATGATTCGTCTTGTATAGGGAGGATTTTGACACGAGGTCCCCATTTAATGCTTGGATACTGGGATCAAATGCCAAGCAATAATTCTTCTCCAGTTGATGAATGTTGGCTTGACACTGGTGATATAGGGCATATAGATGATTGTGGAAATATCTGGCTCGTTGGGCGCTTGAAGGGCCGAATAAAGAGTGGGGGAGAAAATGTTTATCCTGAAGAGGTAAGCATCCAGACTTCAATGCGTTCATTCTCTTCGTTCAATTAAGCTATCAACACAAAAGAGAACTGCCTACGTGAAATCTCTTTAGTTGATGAGAAAGTGATAGACGTGTGTTAATTATTTTCTTGTAATGGAACACCATGATTTCTTTTTGCATTGTTTCCATGGGAATGTAATAGCCTGTAAATAATTCAGTGAGTTTGTTTGTGACACAGGTGGAAGCTGTCTTATTGCAGCATCC</genome_strand>
        <mrna_strand>GATGAT....................................................................................................GTCTATTTACACACTGCACCGCTGTGCCATATTGGTGGTATATCATCAGCCCTGGCCATGCTAATGGCAGGAGGTCGTCATATTTTACTACCAAAGTTTGAAGCTAAATTGGCTGTTGAATCCATAGACCAGCATTGTGTTACTTCTCTCATTACAGTTCCAGCTATGATGACTGATCTAATCTCTTTTTATAA................................................................................................................................................................................................................................................................................................................................................GACAAAGCACATATCTGTAGGGTCCAAATCTGTGAAGAAGGTTCTTAATGGAGCTGGGGGTCTTTCATCTAGTCTTATCAAAAATGTGATTGAGATATTCCCGAGGGCTAAACTTCTTTCAGCTTACG.......................................................................................................................................................................................................................................................................................................GAATGACCGAGGCGTGTTCTTCTCTGACTTTCATGACTCTTTATGACCCGGCGAGAGAGAGTTGTATCCAGCATTCTTATGCCAACAGCTCCAATTTGGCACATAAACCAGATGGTACCTGTGTTGGAAAGCCTGCTCCACATATTGAAATAAGGATTGCTGGGGATGATTCGTCTTGTATAGGGAGGATTTTGACACGAGGTCCCCATTTAATGCTTGGATACTGGGATCAAATGCCAAGCAATAATTCTTCTCCAGTTGATGAATGTTGGCTTGACACTGGTGATATAGGGCATATAGATGATTGTGGAAATATCTGGCTCGTTGGGCGCTTGAAGGGCCGAATAAAGAGTGGGGGAGAAAATGTTTATCCTGAAGAA.......................................................................................................................................................................................................................GTGGAAGCTGTCTTATTGCAGCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E602454" ref_strand="+" ref_description="SGN-E602454 [55518]">
      <seq>aaaagaagttgcaaaaggagtttaacagcagactacctgtgggcacctaaggaagcagctataatatgctttacctcaggcatatacgcactacctttccacatgtgtatttcctgttcttccatttctttaccgtgattcagaaagtgatcttcaaatcatctcacacctacggaaactgacaaaatgaagttctaagagaaatgtggtactggaattatctttttcaactaaggaacgtaatgtctctcccacaattttatctggatcagattaggaaaatatcttgtttcttagcctcagtaaagttatttgtctactagcaaaattcttgaacaagaagatggtcattctgtatatttgctccactgagaaatgtgttgtgtaggttgagtcattgaactgcatgtccaaagtaattcttatctgttcaattcttaaaccctcaatctaattgtgtgtctccttttctggtacaaggagtattgctaagtccattgacttatatttaagattttttttctgtttcctaatgacaatagggaccacagggaggccaaagggagttaccttaagccactcagctttggtggtgcaatcccttgcaaaaattgcaatcgttggttacggtctatttacacactgcaccactgtgccatattggtggtatatcatcagccctgggccttgctaatggcaggaggttgtcatattttactaccaaagtttgaagctaaaattggctgttggaatccataagaccagcataagtgttacttctctcattacagttccagctatgatgactgatctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="11351" stop="9832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11051" g_stop="10425" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10424" i_stop="10314" i_length="111">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10313" g_stop="10132" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="816" r_length="187" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E602454" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11051" e_stop="10425"/>
          <exon e_start="10313" e_stop="10132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGTTGCGAAAGGCGTTTAACAGCAGACTACCTGTGGGCACCTAAGGAAGCAGCTATAATATGCTTTACCTCAGGCATATACTAACTACCTTTCCACATGTGTGTTTCTTGTTCTTCCATTTCTTTACCATGATTCAGAAAGTGATCTTCAAATACTCTCACACCTACGGAAACTGACAAAATGAAGTTCTAAGAGAAATGTGGTACTGGAAATATCTTTTTTTAACTAAGGAACATAATGTCTCTCCCACAATTTTATCTGGATCAGATTAGGGAAATATCGTGTTTCTTAGCCTCAGTAAAGTTATTTGTCTACTAGCAAAATTTTTGAACAAGAAGATGGTCA-----TATATTTGCTCCAGTGAGAAATGTGTTGTGCAGGTTGAGTCATTGAACTGCATGTCCAAAGTAATGCTTATCTGTTCAATTCTTAAACCCTCAATCTAATCGTGTGTCCCCATTTCTGGTACAAGGAGTATTGCTGAGTGCATTGACTTATATTTAAGATTTTTTTTTTCTGTTCCCTAATGACAATAGGGACCACAGGGAGGCCAAAGGGAGTTACCCTAAGCCACTCAGCTTTGGTGGTGCAATCCCTTGCAAAAATTGCAATCGTTGGTTACGGTGAGGATGATGTATGCTTGTCTACTGTGATAATATGGAAGTTGCAACCTAGATAGATGATCCAAATGTTTGAAACACATGCCAATTTGATTCATGTTATTTTTCTTGCAGGTCTATTTACACACTGCACCGCTGTGCCATATTGGTGGTATATCATCAGCCCT-GGCCATGCTAATGGCAGGAGGTCGTCATATTTTACTACCAAAGTTTGAAGCTA-AATTGGCTGTT-GAATCCAT-AGACCAGCAT-AGTGTTACTTCTCTCATTACAGTTCCAGCTATGATGACTGATCTAAT</genome_strand>
        <mrna_strand>AAAAGAAGTTGCAAAAGGAGTTTAACAGCAGACTACCTGTGGGCACCTAAGGAAGCAGCTATAATATGCTTTACCTCAGGCATATACGCACTACCTTTCCACATGTGTATTTCCTGTTCTTCCATTTCTTTACCGTGATTCAGAAAGTGATCTTCAAATCATCTCACACCTACGGAAACTGACAAAATGAAGTTCTAAGAGAAATGTGGTACTGGAATTATC-TTTTTCAACTAAGGAACGTAATGTCTCTCCCACAATTTTATCTGGATCAGATTAGGAAAATATCTTGTTTCTTAGCCTCAGTAAAGTTATTTGTCTACTAGCAAAATTCTTGAACAAGAAGATGGTCATTCTGTATATTTGCTCCACTGAGAAATGTGTTGTGTAGGTTGAGTCATTGAACTGCATGTCCAAAGTAATTCTTATCTGTTCAATTCTTAAACCCTCAATCTAATTGTGTGTCTCCTTTTCTGGTACAAGGAGTATTGCTAAGTCCATTGACTTATATTTAAGA--TTTTTTTTCTGTTTCCTAATGACAATAGGGACCACAGGGAGGCCAAAGGGAGTTACCTTAAGCCACTCAGCTTTGGTGGTGCAATCCCTTGCAAAAATTGCAATCGTTGGTTACG...............................................................................................................GTCTATTTACACACTGCACCACTGTGCCATATTGGTGGTATATCATCAGCCCTGGGCCTTGCTAATGGCAGGAGGTTGTCATATTTTACTACCAAAGTTTGAAGCTAAAATTGGCTGTTGGAATCCATAAGACCAGCATAAGTGTTACTTCTCTCATTACAGTTCCAGCTATGATGACTGATCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341101" ref_strand="+" ref_description="SGN-E341101 [cTOE-22-K16]">
      <seq>tcatctgcttctcttaactttttttttcttttcaattcaaaattttataatgaggcaaaattttctagttgttgttctcacattcattttcgtagtattatcgtcgtctcgatccaattgcagagagcttcgtccggcggagcacggattggcgacgacggagaatcaaaactcagattccagtactacaaacgatgaaattccggagatgctgtcgttcttcggcggtaatgacggccggcgggatactaagccgccggtagctaagccgattgcggagaacgtgacgtggatcggcggcgagagaggaggaatatcagttcatcacaacagtagagatcatgtgagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="17940" stop="18893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18240" g_stop="18593" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E341101" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18240" e_stop="18593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTGCTTCTCTTAACTTTTTTTTTTTTTTTTCAATTCAAAATTTTATAATGAGGCAAAATTTTCTAGTTGTTGTTCTCACATTCATCGTCGTAGTATTATCGTCGTCTCGATCCAATTGCAGAGAGCTTCGTCCGGCGGAGCACGGATTGGCGACGACGGAGAATCAAAACTCAGATTCCAGTACTACAAACGATGAAATTCCGGAGATGATGTCGTTCTTCGGCGGTAATGGCGGCCGGCGGGATACTAAGCCGCCGGTAGCTAAGCCGATGGCGGAGAACGTGACGTGGATCGGCGGCGAGAGAGGAGGAATATCAGTTCATCACAACAGTAGAGATCATGTGAGGGAT</genome_strand>
        <mrna_strand>TCATCTGCTTCTCTTAAC--TTTTTTTTTCTTTTCAATTCAAAATTTTATAATGAGGCAAAATTTTCTAGTTGTTGTTCTCACATTCATTTTCGTAGTATTATCGTCGTCTCGATCCAATTGCAGAGAGCTTCGTCCGGCGGAGCACGGATTGGCGACGACGGAGAATCAAAACTCAGATTCCAGTACTACAAACGATGAAATTCCGGAGATGCTGTCGTTCTTCGGCGGTAATGACGGCCGGCGGGATACTAAGCCGCCGGTAGCTAAGCCGATTGCGGAGAACGTGACGTGGATCGGCGGCGAGAGAGGAGGAATATCAGTTCATCACAACAGTAGAGATCATGTGAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339329" ref_strand="+" ref_description="SGN-E339329 [cTOF-4-J8]">
      <seq>atctgcttctcttaacttttttttttcttttcaattcaaaattttataatgaggcaaaattttctagttgttgttctcacattcattttcgtagtattatcgtcgtctcgatccaattgcagagagcttcgtccggcggagcacggattggcgacgacggagaatcaaaactcagattccagtactacaaacgatgaaattccggagatgctgtcgttcttcggcggtaatgacggccggcgggatactaagccgccggtagctaagccgattgcggagaacgtgacgtggatcggcggcgagagaggaggaatatcagttcatcacaacagtagagatcatgtgagggatgtgttgctgatttccagtttggtttgtggagctaccggcgtcgttttgcttgccgtttcagtgtttgtttgtgtcgttttgaggtttcggaaggagaaatcggtggaaaatggaaaagaaacgacgccgttgggtacgccagtagatgacgttgttctcgctcagaaaggaacttaactatcctgcttcgaaaattactcgaacggtaaacatttttcacctataattaattattatgagttcgagtcactatcgagcaaagagataaaaagctcgcaaggaagagataaaaaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="17942" stop="19193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18242" g_stop="18893" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E339329" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18242" e_stop="18893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGCTTCTCTTAACTTTTTTTTTTTTTTTTCAATTCAAAATTTTATAATGAGGCAAAATTTTCTAGTTGTTGTTCTCACATTCATCGTCGTAGTATTATCGTCGTCTCGATCCAATTGCAGAGAGCTTCGTCCGGCGGAGCACGGATTGGCGACGACGGAGAATCAAAACTCAGATTCCAGTACTACAAACGATGAAATTCCGGAGATGATGTCGTTCTTCGGCGGTAATGGCGGCCGGCGGGATACTAAGCCGCCGGTAGCTAAGCCGATGGCGGAGAACGTGACGTGGATCGGCGGCGAGAGAGGAGGAATATCAGTTCATCACAACAGTAGAGATCATGTGAGGGATGTGTTGCTGATTTCCAGTTTGGTTTGTGGAGCTACCGGCGTCGTTTTGCTTGCCGTTTCAGTGTTTGTTTGTGTCGTTTTGAGGTTTCGGAAGGAGAAATCGGTGGAAAATGGAAAAGAAACGACGCCGTTGGGTACGCCAGTAGATGACGTTGTTCTCGCTCAGAAAGGAACTTAACTATCCTGCTTCGAAAATTACTCGAATGGTAAACATTTTTCACCTATAATTAATTATTACGAATTCGAGTCACTATCGAGCAAAGAGATAAAAAGCTCGCAGGGAAGAGATAAAAAAAACTTA</genome_strand>
        <mrna_strand>ATCTGCTTCTCTTAACT-TTTTTTTTTCTTTTCAATTCAAAATTTTATAATGAGGCAAAATTTTCTAGTTGTTGTTCTCACATTCATTTTCGTAGTATTATCGTCGTCTCGATCCAATTGCAGAGAGCTTCGTCCGGCGGAGCACGGATTGGCGACGACGGAGAATCAAAACTCAGATTCCAGTACTACAAACGATGAAATTCCGGAGATGCTGTCGTTCTTCGGCGGTAATGACGGCCGGCGGGATACTAAGCCGCCGGTAGCTAAGCCGATTGCGGAGAACGTGACGTGGATCGGCGGCGAGAGAGGAGGAATATCAGTTCATCACAACAGTAGAGATCATGTGAGGGATGTGTTGCTGATTTCCAGTTTGGTTTGTGGAGCTACCGGCGTCGTTTTGCTTGCCGTTTCAGTGTTTGTTTGTGTCGTTTTGAGGTTTCGGAAGGAGAAATCGGTGGAAAATGGAAAAGAAACGACGCCGTTGGGTACGCCAGTAGATGACGTTGTTCTCGCTCAGAAAGGAACTTAACTATCCTGCTTCGAAAATTACTCGAACGGTAAACATTTTTCACCTATAATTAATTATTATGAGTTCGAGTCACTATCGAGCAAAGAGATAAAAAGCTCGCAAGGAAGAGAT-AAAAAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349186" ref_strand="+" ref_description="SGN-E349186 [cTOS-2-E24]">
      <seq>gagaacgtgacgtggatcggcggcgagagaggaggaatatcagttcatcacaacagtagagatcatgtgagggatgtgttgctgatttccagtttggtttgtggagctaccggcgtcgttttgcttgccgtttcagtgtttgtttgtgtcgttttgaggtttcggaaggagaaatcggtggaaaatggaaaagaaacgacgccgttgggtacgccagtagatgacgttgttctcgctcagaaaggaacttaactatcctgcttcgaaaattactcgaacggtaaacatttttcacctataattaattattatgagttcgagtcactatcgagcaaagagataaaaagctcgcagggaagagataaaaaaaacttacagtggtccattttcaatgtttttgtagcacctttttaatattcttctttctttttgttattctgtatgtatagccggagtatatatttatcatttttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="18219" stop="122301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18519" g_stop="18994" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18995" i_stop="19046" i_length="52">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.242" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19047" g_stop="19084" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="514" r_length="38" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E349186" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18519" e_stop="18994"/>
          <exon e_start="19047" e_stop="19084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACGTGACGTGGATCGGCGGCGAGAGAGGAGGAATATCAGTTCATCACAACAGTAGAGATCATGTGAGGGATGTGTTGCTGATTTCCAGTTTGGTTTGTGGAGCTACCGGCGTCGTTTTGCTTGCCGTTTCAGTGTTTGTTTGTGTCGTTTTGAGGTTTCGGAAGGAGAAATCGGTGGAAAATGGAAAAGAAACGACGCCGTTGGGTACGCCAGTAGATGACGTTGTTCTCGCTCAGAAAGGAACTTAACTATCCTGCTTCGAAAATTACTCGAATGGTAAACATTTTTCACCTATAATTAATTATTACGAATTCGAGTCACTATCGAGCAAAGAGATAAAAAGCTCGCAGGGAAGAGATAAAAAAAACTTACAGTGGTCCATTTTCAATGTTTTTGTAGCACCTTTTTAATATTCTTCTTTCTTTTTGTTATTCTGTATGTATAGCCGGAGTATATATTTATCATTTTTTTTATCTTTGGCTTTTATGCGCGATACAAATTTTTTTTTATATATTAACAATAAGGTAATAAAAATGGTAGGCAATCTATCATAGATTAAAAA</genome_strand>
        <mrna_strand>GAGAACGTGACGTGGATCGGCGGCGAGAGAGGAGGAATATCAGTTCATCACAACAGTAGAGATCATGTGAGGGATGTGTTGCTGATTTCCAGTTTGGTTTGTGGAGCTACCGGCGTCGTTTTGCTTGCCGTTTCAGTGTTTGTTTGTGTCGTTTTGAGGTTTCGGAAGGAGAAATCGGTGGAAAATGGAAAAGAAACGACGCCGTTGGGTACGCCAGTAGATGACGTTGTTCTCGCTCAGAAAGGAACTTAACTATCCTGCTTCGAAAATTACTCGAACGGTAAACATTTTTCACCTATAATTAATTATTATGAGTTCGAGTCACTATCGAGCAAAGAGATAAAAAGCTCGCAGGGAAGAGATAAAAAAAACTTACAGTGGTCCATTTTCAATGTTTTTGTAGCACCTTTTTAATATTCTTCTTTCTTTTTGTTATTCTGTATGTATAGCCGGAGTATATATTTATCATTTTTTTT....................................................TTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353024" ref_strand="+" ref_description="SGN-E353024 [cTOS-14-O2]">
      <seq>gagaacgtgacgtggatcggcggcgagagaggaggaatatcagttcatcacaacagtagagatcatgtgagggatgtgttgctgatttccagtttggtttgtggagctaccggcgtcgttttgcttgccgtttcagtgtttgtttgtgtcgttttgaggtttcggaaggagaaatcggtggaaaatggaaaagaaacgacgccgttgggtacgccagtagatgacgttgttctcgctcagaaaggaacttaactatcctgcttcgaaaattactcgaacggtaaacatttttcacctataattaattattatgagttcgagtcactatcgagcaaagagataaaaagctcgcagggaagagataaaaaaaacttacagtggtccattttcaatgtttttgtagcacctttttaatattcttctttctttttgttattctgtatgtatagccggagtatatatttatcattttttttttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="18219" stop="19300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18519" g_stop="19000" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E353024" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18519" e_stop="19000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACGTGACGTGGATCGGCGGCGAGAGAGGAGGAATATCAGTTCATCACAACAGTAGAGATCATGTGAGGGATGTGTTGCTGATTTCCAGTTTGGTTTGTGGAGCTACCGGCGTCGTTTTGCTTGCCGTTTCAGTGTTTGTTTGTGTCGTTTTGAGGTTTCGGAAGGAGAAATCGGTGGAAAATGGAAAAGAAACGACGCCGTTGGGTACGCCAGTAGATGACGTTGTTCTCGCTCAGAAAGGAACTTAACTATCCTGCTTCGAAAATTACTCGAATGGTAAACATTTTTCACCTATAATTAATTATTACGAATTCGAGTCACTATCGAGCAAAGAGATAAAAAGCTCGCAGGGAAGAGATAAAAAAAACTTACAGTGGTCCATTTTCAATGTTTTTGTAGCACCTTTTTAATATTCTTCTTTCTTTTTGTTATTCTGTATGTATAGCCGGAGTATATATTTATCATTTTTTTTATCTTT</genome_strand>
        <mrna_strand>GAGAACGTGACGTGGATCGGCGGCGAGAGAGGAGGAATATCAGTTCATCACAACAGTAGAGATCATGTGAGGGATGTGTTGCTGATTTCCAGTTTGGTTTGTGGAGCTACCGGCGTCGTTTTGCTTGCCGTTTCAGTGTTTGTTTGTGTCGTTTTGAGGTTTCGGAAGGAGAAATCGGTGGAAAATGGAAAAGAAACGACGCCGTTGGGTACGCCAGTAGATGACGTTGTTCTCGCTCAGAAAGGAACTTAACTATCCTGCTTCGAAAATTACTCGAACGGTAAACATTTTTCACCTATAATTAATTATTATGAGTTCGAGTCACTATCGAGCAAAGAGATAAAAAGCTCGCAGGGAAGAGATAAAAAAAACTTACAGTGGTCCATTTTCAATGTTTTTGTAGCACCTTTTTAATATTCTTCTTTCTTTTTGTTATTCTGTATGTATAGCCGGAGTATATATTTATCATTTTTTTTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E610501" ref_strand="+" ref_description="SGN-E610501 [57663]">
      <seq>accaaatccaaatccaaaccccccatttggcgcctactgcctatttactaaaccctgtttgtcttaagttcacattcaacttgcaaacacgggcgggccctaaattttccagttccccaaattctcttcttctctcttttgtattctctcgagatttctctctcttctccttgtgctttaaatttgaaaattgaaatcccttcattttgaattttgaaaaaaaatccaggttaatggcaagtcttctagcttcttcagggtttaacctatttttaatggggttttgagtttctagatccgcatcagcttaaaacctagggattaacaacattataagagcaatgacagctgtaagtccttattttgatgacttgcgatgtcaacctgaggtcattcatcctccacaaaacgaagactgcacggtcattggtgaacatatgaatgagcctgctcaacatacagcaaaaccaaatgtgactgtttccagtagtgttcgtgaattattggaatgtcctgtatgcttaaatgctatgtatccacccatccatcagtgttccaatggtcacacactatgttctggttgcaaacctagggttcataatcgctgtccaacatgtaggcatgaacttggtaatatccgatgtcttgcattggagaaggttgctgcatctcttgaactcccatgtaaatatcagagctttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="27653" stop="30970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27966" g_stop="28271" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="318" r_length="298" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28272" i_stop="29533" i_length="1262">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.888" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29534" g_stop="29766" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="551" r_length="233" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29767" i_stop="30516" i_length="750">
            <donor d_prob="0.929" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30517" g_stop="30670" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="705" r_length="154" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E610501" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27966" e_stop="28271"/>
          <exon e_start="29534" e_stop="29766"/>
          <exon e_start="30517" e_stop="30670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCATTTGGCGCCCACTGCCTATTTACTTAAACCCTGTTTGTCTTAAGCTCACATT-AACTTGCAAACGCAGGCGGGCCCTTAAATTTTCCAGTTCCCCAAATTTTCTTCTTCTCTCCTTTGTATTCTCTCGAGATTTCTCTCTCTTCTCTTTGGGTTTTAAATTTTAAAAATTGAAATCCTATCATTTTTTGAATTTTTGAAAAAGATTCATGTTAATGGCAACTCTTCTAGCTTCTTCTTCATGGGTTTAACCTATTTTTAATGGGGTTTTGAGATTCTAGATCAGCGTCAGCTTAAAACCTAGGTATGCATATTTCATTTCCCTGTTCAAAATGCTATGTATATTTTTTGCGAATTTAAGGTGTTTTTGTTTCTATTGGTTTCCGTTGGGGGTGTGATAGCTGCATTAGAGCTAGACTAATTTGGATTTGCATGGGTTTCGAAAAAAATTTCATACCTAGGTCTCGAATGGCATCATCCACTGTTCGTTTCTTTTTTATTATTTTGATAGGGTTGTGTGTTTTATTAGAGAATTAATTTGTGGGTTTGTGAGAGAATTATATCTTGCAGTTATTATTTTGAATTTGTTTTTGTTTTATATTTTCACCTAGTGGTGGTTATATTTAAGAATGTCTGGCTTAATTGATTGTGATCTTGTGTAGTTAAGAGACGATCGTGTTACTGTATCGAATGTGTCCTCTTGGGATTGTTGCTCAATCTGTTTTGTGTTCGGCATATCTATATTCTGAAATAGTTCGTCAATTTAGTGCTTCATTTGTCGAGGCTTTTACCTGAAGAAGACTTGATGAGGATTTCCCGAGCATGGTTGAGATCAATGTGAAAATAAGAATGCCGGAAAGTCTAAAGTGTGCTTTCAGAAATGAAACCATTTTGAACCTAAGCAGATGAAGATAAGTAGACCTGGTTAATTTAATATTGTTTTCTGTTGTTTTTTTGGTGTAAATAATTGATTGCGTTTGCTTTTAAATGGGGATTTCTCTCTCACTTTCTTGTTCTGTTAGTTGGAACCATGAGCTCTAAGAGTTAATCACATCACTAAAGGTAAAAAACAATATTTTGGATGTTGCTGGATAAAGAGAATTTTTTAATATCCTTTTCTTTCTGTAACTCGGAGTTTAGCTTGATGGTCAAATCAATGAAGCTGTAATGGATCACGTGTTGTTATTTTGTTGTGTGTAAGTAGCTTTGTGTCTTTTAAAGTTCAGTATTTTGGGGCACCTAAGGGTGTGGCCTAGTGGTTTATGAAGAGGGTTAAGACACAAGATCTCATGTTCAAGTCCTAGCGGAAAGAATACTAGGTATCAAGTAGAATTAGTCGAGGTGCCCATAAATGGCCAAGACACCACAATTATATAAGAGAAAGTTCATTATTCTGGATCCTGTGTGCTGAAATCAAATATACTCTCAAGTAACTGAGTTATTTTGCATCATATGAGGTGTAACTGAAAATTTAAGACATATCTTTTTATCAACTTCTGCATGCTTATTTTATCATCAACTATGGAGGTATATAACCATATTTGATGGAATACTCGGCATATGCAGGGATTAACAGCATTACAAGAGCAATGACAACTGTAAGTCCTTATTTTGATGACTTGCGATGTCAACCTGAGGTCATTCATCCTCCACAAAACGAAGACTGCATGGACATTGGTGAACATATGAATGAGCCTGCTCAACATACAGCAAAACCTAATGTGACTGTTTCCAGTAGTGTTCGTGAATTGTTGGAATGCCCTGTATGCTTAAATGCTATGTATCCACCCATCCATCAGGTGTGAAAATCTGAATTCTTGCTGATAAATGCTGACATCCTTACTAGCCTTTGCTTAGTGTTACATACAAAAAGATAATGTTCTCTTATCCTCTTGCTGTTACAGATGTTTGAATCTTCATGTAAACAAATGGGAAAAGAAAAAGTGAAAGAAAGTTAGAGGGAAAAATGGTAGTTTCGTCAGTTTTTTCTTTTAGAATAGTGTAGGATGAAGTTAACTTACATGTTCCTATTTATCTCTTTTATCTTTTAAAGAAGTTAGTGAAACAAATACTTCTCCATCTTCATAAGAATGGTGGGTTGTAAATTACAAGGGTGGTTTGGTTTTTGGACATTGATATATTTTAATTTTATTTGGTCTAATGTTTATCTGGAATGAATTTTATTTGGATAAACCTACAATCTGACCCGACTTGTTTGGGACTGGGCCATTGTTGTTAATTTATTAATTTCCGAATAAAATTTTACATATTCTGGAACTGTATAAAAGTAATAAAAAATCAGTTCTATATTGTCAAATATTTTTAGAACGTATTTGAAATAGTCAGTGTCAAAGAAAAATTGTTTGATTCTCAATAGTACCATTTAAACTGGAAAAGAGAACTGATTTACACTTACTAACAATTAGTGGAGTGATATCCTTAGTTCTTTGGCATAGCTGTTCAATTTGTTATGAAGGATTATTATCACTGCCTCTTGTTCTTGCATATGCAGTATTTAATTCTTCTCTATCTCTTTGCCCTTTTTGCAGTGTTCCAACGGTCACACACTGTGTTCTGGTTGCAAACCTAGGGTTCACAATCGCTGTCCAACATGTCGGCATGAACTTGGTAATATCCGATGTCTTGCGTTGGAGAAGGTTGCTGCATCTCTTGAACTCCCATGTAAATACCAGAACTTTGGAT</genome_strand>
        <mrna_strand>CCCCATTTGGCGCCTACTGCCTATTTAC-TAAACCCTGTTTGTCTTAAGTTCACATTCAACTTGCAAACACGGGCGGGCCC-TAAATTTTCCAGTTCCCCAAATTCTCTTCTTCTCTCTTTTGTATTCTCTCGAGATTTCTCTCTCTTCTCCTTGTGCTTTAAA-TTTGAAAATTGAAATCCCTTCA--TTTTGAATTTTGAAAAAAAATCCAGGTTAATGGCAAGTCTTCTAG---CTTCTTCA-GGGTTTAACCTATTTTTAATGGGGTTTTGAGTTTCTAGATCCGCATCAGCTTAAAACCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTAACAACATTATAAGAGCAATGACAGCTGTAAGTCCTTATTTTGATGACTTGCGATGTCAACCTGAGGTCATTCATCCTCCACAAAACGAAGACTGCACGGTCATTGGTGAACATATGAATGAGCCTGCTCAACATACAGCAAAACCAAATGTGACTGTTTCCAGTAGTGTTCGTGAATTATTGGAATGTCCTGTATGCTTAAATGCTATGTATCCACCCATCCATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCAATGGTCACACACTATGTTCTGGTTGCAAACCTAGGGTTCATAATCGCTGTCCAACATGTAGGCATGAACTTGGTAATATCCGATGTCTTGCATTGGAGAAGGTTGCTGCATCTCTTGAACTCCCATGTAAATATCAGAGCTTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245741" ref_strand="+" ref_description="SGN-E245741 [cLEF-48-M20]">
      <seq>ctagatcagcgtcagcttaaaacctagggattaacagcattacaagagcaatgacaactgtaagtccttattttgatgacttgcgatgtcaacctgaggtcattcatcctccacaaaacgaagactgcatggacattggtgaacatatgaatgagcctgctcaacatacagcaaaacctaatgtgactgtttccagtagtgttcgtgaattgttggaatgccctgtatgcttaaatgctatgtatccacccatccatcagtgttccaacggtcacacactgtgttctggttgcaaacctagggttcacaatcgctgtccaacatgtcggcatgaacttggtaatatccgatgtcttgcgttggagaaggttgctgcatctcttgaactcccatgtaaataccagaactttggatgcataggcatcattccttactacagcaagctaaagcatgagtcccaatgctccttcagaccctataattgtccctatgcgggatcagactgcactgtcatcggtgacataccatatatagttgcccatctaaaagatgatcacaaagttgacatgcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="27945" stop="31131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28245" g_stop="28271" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28272" i_stop="29533" i_length="1262">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29534" g_stop="29766" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="260" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29767" i_stop="30516" i_length="750">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30517" g_stop="30831" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="575" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E245741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28245" e_stop="28271"/>
          <exon e_start="29534" e_stop="29766"/>
          <exon e_start="30517" e_stop="30831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGATCAGCGTCAGCTTAAAACCTAGGTATGCATATTTCATTTCCCTGTTCAAAATGCTATGTATATTTTTTGCGAATTTAAGGTGTTTTTGTTTCTATTGGTTTCCGTTGGGGGTGTGATAGCTGCATTAGAGCTAGACTAATTTGGATTTGCATGGGTTTCGAAAAAAATTTCATACCTAGGTCTCGAATGGCATCATCCACTGTTCGTTTCTTTTTTATTATTTTGATAGGGTTGTGTGTTTTATTAGAGAATTAATTTGTGGGTTTGTGAGAGAATTATATCTTGCAGTTATTATTTTGAATTTGTTTTTGTTTTATATTTTCACCTAGTGGTGGTTATATTTAAGAATGTCTGGCTTAATTGATTGTGATCTTGTGTAGTTAAGAGACGATCGTGTTACTGTATCGAATGTGTCCTCTTGGGATTGTTGCTCAATCTGTTTTGTGTTCGGCATATCTATATTCTGAAATAGTTCGTCAATTTAGTGCTTCATTTGTCGAGGCTTTTACCTGAAGAAGACTTGATGAGGATTTCCCGAGCATGGTTGAGATCAATGTGAAAATAAGAATGCCGGAAAGTCTAAAGTGTGCTTTCAGAAATGAAACCATTTTGAACCTAAGCAGATGAAGATAAGTAGACCTGGTTAATTTAATATTGTTTTCTGTTGTTTTTTTGGTGTAAATAATTGATTGCGTTTGCTTTTAAATGGGGATTTCTCTCTCACTTTCTTGTTCTGTTAGTTGGAACCATGAGCTCTAAGAGTTAATCACATCACTAAAGGTAAAAAACAATATTTTGGATGTTGCTGGATAAAGAGAATTTTTTAATATCCTTTTCTTTCTGTAACTCGGAGTTTAGCTTGATGGTCAAATCAATGAAGCTGTAATGGATCACGTGTTGTTATTTTGTTGTGTGTAAGTAGCTTTGTGTCTTTTAAAGTTCAGTATTTTGGGGCACCTAAGGGTGTGGCCTAGTGGTTTATGAAGAGGGTTAAGACACAAGATCTCATGTTCAAGTCCTAGCGGAAAGAATACTAGGTATCAAGTAGAATTAGTCGAGGTGCCCATAAATGGCCAAGACACCACAATTATATAAGAGAAAGTTCATTATTCTGGATCCTGTGTGCTGAAATCAAATATACTCTCAAGTAACTGAGTTATTTTGCATCATATGAGGTGTAACTGAAAATTTAAGACATATCTTTTTATCAACTTCTGCATGCTTATTTTATCATCAACTATGGAGGTATATAACCATATTTGATGGAATACTCGGCATATGCAGGGATTAACAGCATTACAAGAGCAATGACAACTGTAAGTCCTTATTTTGATGACTTGCGATGTCAACCTGAGGTCATTCATCCTCCACAAAACGAAGACTGCATGGACATTGGTGAACATATGAATGAGCCTGCTCAACATACAGCAAAACCTAATGTGACTGTTTCCAGTAGTGTTCGTGAATTGTTGGAATGCCCTGTATGCTTAAATGCTATGTATCCACCCATCCATCAGGTGTGAAAATCTGAATTCTTGCTGATAAATGCTGACATCCTTACTAGCCTTTGCTTAGTGTTACATACAAAAAGATAATGTTCTCTTATCCTCTTGCTGTTACAGATGTTTGAATCTTCATGTAAACAAATGGGAAAAGAAAAAGTGAAAGAAAGTTAGAGGGAAAAATGGTAGTTTCGTCAGTTTTTTCTTTTAGAATAGTGTAGGATGAAGTTAACTTACATGTTCCTATTTATCTCTTTTATCTTTTAAAGAAGTTAGTGAAACAAATACTTCTCCATCTTCATAAGAATGGTGGGTTGTAAATTACAAGGGTGGTTTGGTTTTTGGACATTGATATATTTTAATTTTATTTGGTCTAATGTTTATCTGGAATGAATTTTATTTGGATAAACCTACAATCTGACCCGACTTGTTTGGGACTGGGCCATTGTTGTTAATTTATTAATTTCCGAATAAAATTTTACATATTCTGGAACTGTATAAAAGTAATAAAAAATCAGTTCTATATTGTCAAATATTTTTAGAACGTATTTGAAATAGTCAGTGTCAAAGAAAAATTGTTTGATTCTCAATAGTACCATTTAAACTGGAAAAGAGAACTGATTTACACTTACTAACAATTAGTGGAGTGATATCCTTAGTTCTTTGGCATAGCTGTTCAATTTGTTATGAAGGATTATTATCACTGCCTCTTGTTCTTGCATATGCAGTATTTAATTCTTCTCTATCTCTTTGCCCTTTTTGCAGTGTTCCAACGGTCACACACTGTGTTCTGGTTGCAAACCTAGGGTTCACAATCGCTGTCCAACATGTCGGCATGAACTTGGTAATATCCGATGTCTTGCGTTGGAGAAGGTTGCTGCATCTCTTGAACTCCCATGTAAATACCAGAACTTTGGATGCATAGGCATCATTCCTTACTACAGCAAGCTAAAGCATGAGTCCCAATGCTCCTTCAGACCCTATAATTGTCCCTATGCGGGATCAGACTGCACTGTCATCGGTGACATACCATATATAGTTGCCCATCTAAAAGATGATCACAAAGTTGACATGCACATG</genome_strand>
        <mrna_strand>CTAGATCAGCGTCAGCTTAAAACCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTAACAGCATTACAAGAGCAATGACAACTGTAAGTCCTTATTTTGATGACTTGCGATGTCAACCTGAGGTCATTCATCCTCCACAAAACGAAGACTGCATGGACATTGGTGAACATATGAATGAGCCTGCTCAACATACAGCAAAACCTAATGTGACTGTTTCCAGTAGTGTTCGTGAATTGTTGGAATGCCCTGTATGCTTAAATGCTATGTATCCACCCATCCATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCAACGGTCACACACTGTGTTCTGGTTGCAAACCTAGGGTTCACAATCGCTGTCCAACATGTCGGCATGAACTTGGTAATATCCGATGTCTTGCGTTGGAGAAGGTTGCTGCATCTCTTGAACTCCCATGTAAATACCAGAACTTTGGATGCATAGGCATCATTCCTTACTACAGCAAGCTAAAGCATGAGTCCCAATGCTCCTTCAGACCCTATAATTGTCCCTATGCGGGATCAGACTGCACTGTCATCGGTGACATACCATATATAGTTGCCCATCTAAAAGATGATCACAAAGTTGACATGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334695" ref_strand="+" ref_description="SGN-E334695 [cTOD-23-F12]">
      <seq>agcattacaagagcaatgacaactgtaagtccttattttgatgacttgcgatgtcaacctgaggtcattcatcctccacaaaacgaagactgcatggacattggtgaacatatgaatgagcctgctcaacatacagcaaaacctaatgtgactgtttccagtagtgttcgtgaattgttggaatgccctgtatgcttaaatgctatgtatccacccatccatcagtgttccaacggtcacacactgtgttctggttgcaaacctagggttcacaatcgctgtccaacatgtcggcatgaacttggtaatatccgatgtcttgcgttggagaaggttgctgcatctcttgaactcccatgtaaataccagaactttggatgcataggcatcattccttactacagcaagctaaagcatgagtcccaatgctccttcagaccctataattgtccctatgcgggatcagactgcactgtcatcggtgacataccatatatagttgcccatctaaaagatgatcacaaagttgacatgcacatgggcagtactttcaaccatcgctatgtgaagtcaaaaccccatgaagtggaaaatgctacatggatgctcacagttttcagttgctttggtcagtacttctgtttacacttcgaagcatttcaacttggaatggcaccagtttatattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="29242" stop="33084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29542" g_stop="29766" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29767" i_stop="30516" i_length="750">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30517" g_stop="30903" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="612" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30904" i_stop="32707" i_length="1804">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32708" g_stop="32784" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="689" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E334695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29542" e_stop="29766"/>
          <exon e_start="30517" e_stop="30903"/>
          <exon e_start="32708" e_stop="32784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTACAAGAGCAATGACAACTGTAAGTCCTTATTTTGATGACTTGCGATGTCAACCTGAGGTCATTCATCCTCCACAAAACGAAGACTGCATGGACATTGGTGAACATATGAATGAGCCTGCTCAACATACAGCAAAACCTAATGTGACTGTTTCCAGTAGTGTTCGTGAATTGTTGGAATGCCCTGTATGCTTAAATGCTATGTATCCACCCATCCATCAGGTGTGAAAATCTGAATTCTTGCTGATAAATGCTGACATCCTTACTAGCCTTTGCTTAGTGTTACATACAAAAAGATAATGTTCTCTTATCCTCTTGCTGTTACAGATGTTTGAATCTTCATGTAAACAAATGGGAAAAGAAAAAGTGAAAGAAAGTTAGAGGGAAAAATGGTAGTTTCGTCAGTTTTTTCTTTTAGAATAGTGTAGGATGAAGTTAACTTACATGTTCCTATTTATCTCTTTTATCTTTTAAAGAAGTTAGTGAAACAAATACTTCTCCATCTTCATAAGAATGGTGGGTTGTAAATTACAAGGGTGGTTTGGTTTTTGGACATTGATATATTTTAATTTTATTTGGTCTAATGTTTATCTGGAATGAATTTTATTTGGATAAACCTACAATCTGACCCGACTTGTTTGGGACTGGGCCATTGTTGTTAATTTATTAATTTCCGAATAAAATTTTACATATTCTGGAACTGTATAAAAGTAATAAAAAATCAGTTCTATATTGTCAAATATTTTTAGAACGTATTTGAAATAGTCAGTGTCAAAGAAAAATTGTTTGATTCTCAATAGTACCATTTAAACTGGAAAAGAGAACTGATTTACACTTACTAACAATTAGTGGAGTGATATCCTTAGTTCTTTGGCATAGCTGTTCAATTTGTTATGAAGGATTATTATCACTGCCTCTTGTTCTTGCATATGCAGTATTTAATTCTTCTCTATCTCTTTGCCCTTTTTGCAGTGTTCCAACGGTCACACACTGTGTTCTGGTTGCAAACCTAGGGTTCACAATCGCTGTCCAACATGTCGGCATGAACTTGGTAATATCCGATGTCTTGCGTTGGAGAAGGTTGCTGCATCTCTTGAACTCCCATGTAAATACCAGAACTTTGGATGCATAGGCATCATTCCTTACTACAGCAAGCTAAAGCATGAGTCCCAATGCTCCTTCAGACCCTATAATTGTCCCTATGCGGGATCAGACTGCACTGTCATCGGTGACATACCATATATAGTTGCCCATCTAAAAGATGATCACAAAGTTGACATGCACATGGGCAGTACTTTCAACCATCGCTATGTGAAGTCAAAACCCCATGAAGTGGAAAATGCTACATGGATGCTCACAGTAAGTATAATTGCTCTGCTTACATTCAGTGCAGATTAGTTTGTGGTCCAAGTCTAATAGAAATTAGGCAACTCTGACAAAAATTTATGATATGTGCTAGATTTGTGTATTGGAGAATGGTAATATTGTGATTTCTTTGCTATAAAGGATGGGCACTTGGACTTTAGGCTGTGAGTTTGAGACTGACTCTAAGTCTTTTTTTAAAACAGTTTTTTCATTTGAGATGTTGGACAGTTTTATTTGACGTCCCTACTTTTTGTATCTAATGATCAAGGGGGAAGAGGGTGGGGGGGATATTACTTCTCATTAAAAGTTCAGTTTGTTCATAAAATGAACAATAAGAAATTCAAACTCCTCTTGTCTTTATTATATAGTGTTTTAAATTGGAAGACGAGGAGACTTTCAGCTCTATTTGGAAGTCTCTACTAAGTTTGATGTATTGATAGCGCTTTGAAGGTTTTAGGTGCAATAAGTTTTTGTTGGATTGAGGATTAGTTGTTGGTTTCTCATGTGCTCAAAACTAAGATGTATAAGAATGACTCAGGATATACTCTTATCCATGAGATGATAAAAATACCAACAGCTGTACCCAAGAGTTTGCACAGGAATGAACATATTGGTTCATAATACAATGAAACTGATAATGTTCATTTGATAGTTTTTTTCTTTGGATTACAGTTACAGAGCTAATTATATTTCTAATGAAACGACTTTTATCTAATTCGTGTTAATGCTTACTTAGTGTTCGTAAAATATATTATGTCAGAGTTCTTATTACTTAGTGGTTATATGATTTACTCATTTTTAGGAAGAGCAAATGAGAAAGGTTGTTAATCTGGTTTAAGAATGCAATGCTGGAACCATATTGTATTTCTGTGGTCTTATTCTTAAAGCCATAATTTTCCAAACCAATAGTTTTCTACTTTTCTTGTTTGTCATATCTGGTGAAAATTTTTCAGTATTCTTTGGTTTTTATGGGTCACATTATATGGTCAGGGTATTTTTATACTTTTAGCGTATTACTTGCCCATAATTTTGGAGAACATAGAATGTGGGAGATGTGGGATGCAGCTTTGTGGGTTCTTTTCTTTTTTCATGGTTATACTTTTAGTTAACGATTTGCATGATTGTATAAGCGGAAATCCTTAAATATTTAGTCCGAATCACTGAATACTCTTATCTCAGTGGATTTGTAATTTGGCTGCCCATTTCAAAATGGTTGTTGTTATGGGGACCCTTAAGAATCTGGAGGATGAAATACTTGACATCATATTTACAGCAAGGGACATGGTAATTTGACCTTATTAGGGAACCTTTTTGTGATTTTTTTCTCTTTTGGGGAGAACCTTAGCCAGGACAAACTTTGAGCAACCTCCATCTTTGCACTGCATGCCTTTTTGGGGTCTCTTTCTAGGGTGAGTAGGTAGAATAAGTGTACTAGTAATTGGAAGTCAGCTTAACTAGTTATATGTTATGATGCAACTTATTAAGTATATAACTTGGCTCATCCTCTCCGCACTTGGCTACCCAGCTAAAGGCCCAATGAATTTCCCTATTGCTCCAGGTCATTTTGGGGCAAATAGATTATTTATGACGAAGAGAATGAGCTTCAGAGGCTTGTCGGATTGTTCTATACTTAACTAGTTATATGTTATGATGCAACTTATTTTGTGCATTTCCCTTGTAACTGTGTGGAATCTAACACACTGGCTTTAGATGATTTTAGCAGATATCATTGCTTAAACGTTTAGTCCTGTACCTTGTGTGTTTACATCTGAATACGTCATAAAAAATTTTCCTCCAGGTTTTCAGTTGCTTTGGTCAGTACTTCTGTTTACACTTCGAAGCATTTCAACTTGGAATGGCACCAGTTTATATTGC</genome_strand>
        <mrna_strand>AGCATTACAAGAGCAATGACAACTGTAAGTCCTTATTTTGATGACTTGCGATGTCAACCTGAGGTCATTCATCCTCCACAAAACGAAGACTGCATGGACATTGGTGAACATATGAATGAGCCTGCTCAACATACAGCAAAACCTAATGTGACTGTTTCCAGTAGTGTTCGTGAATTGTTGGAATGCCCTGTATGCTTAAATGCTATGTATCCACCCATCCATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCAACGGTCACACACTGTGTTCTGGTTGCAAACCTAGGGTTCACAATCGCTGTCCAACATGTCGGCATGAACTTGGTAATATCCGATGTCTTGCGTTGGAGAAGGTTGCTGCATCTCTTGAACTCCCATGTAAATACCAGAACTTTGGATGCATAGGCATCATTCCTTACTACAGCAAGCTAAAGCATGAGTCCCAATGCTCCTTCAGACCCTATAATTGTCCCTATGCGGGATCAGACTGCACTGTCATCGGTGACATACCATATATAGTTGCCCATCTAAAAGATGATCACAAAGTTGACATGCACATGGGCAGTACTTTCAACCATCGCTATGTGAAGTCAAAACCCCATGAAGTGGAAAATGCTACATGGATGCTCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCAGTTGCTTTGGTCAGTACTTCTGTTTACACTTCGAAGCATTTCAACTTGGAATGGCACCAGTTTATATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333675" ref_strand="+" ref_description="SGN-E333675 [cTOD-22-N18]">
      <seq>agcattacaagagcaatgacaactgtaagtccttattttgatgacttgcgatgtcaacctgaggtcattcatcctccacaaaacgaagactgcatggacattggtgaacatatgaatgagcctgctcaacatacagcaaaacctaatgtgactgtttccagtagtgttcgtgaattgttggaatgccctgtatgcttaaatgctatgtatccacccatccatcagtgttccaacggtcacacactgtgttctggttgcaaaccttagggttcacaatcgctgtccaacatgtcggcatgaacttggtaatatccgatgtcttgcgttggagaaggttgctgcatctcttgaactcccatgtaaataccagaactttggatgcataggcatcattccttactacagncagctaaagcatgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="29242" stop="31013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29542" g_stop="29766" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29767" i_stop="30516" i_length="750">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30517" g_stop="30713" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="423" r_length="198" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E333675" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29542" e_stop="29766"/>
          <exon e_start="30517" e_stop="30713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTACAAGAGCAATGACAACTGTAAGTCCTTATTTTGATGACTTGCGATGTCAACCTGAGGTCATTCATCCTCCACAAAACGAAGACTGCATGGACATTGGTGAACATATGAATGAGCCTGCTCAACATACAGCAAAACCTAATGTGACTGTTTCCAGTAGTGTTCGTGAATTGTTGGAATGCCCTGTATGCTTAAATGCTATGTATCCACCCATCCATCAGGTGTGAAAATCTGAATTCTTGCTGATAAATGCTGACATCCTTACTAGCCTTTGCTTAGTGTTACATACAAAAAGATAATGTTCTCTTATCCTCTTGCTGTTACAGATGTTTGAATCTTCATGTAAACAAATGGGAAAAGAAAAAGTGAAAGAAAGTTAGAGGGAAAAATGGTAGTTTCGTCAGTTTTTTCTTTTAGAATAGTGTAGGATGAAGTTAACTTACATGTTCCTATTTATCTCTTTTATCTTTTAAAGAAGTTAGTGAAACAAATACTTCTCCATCTTCATAAGAATGGTGGGTTGTAAATTACAAGGGTGGTTTGGTTTTTGGACATTGATATATTTTAATTTTATTTGGTCTAATGTTTATCTGGAATGAATTTTATTTGGATAAACCTACAATCTGACCCGACTTGTTTGGGACTGGGCCATTGTTGTTAATTTATTAATTTCCGAATAAAATTTTACATATTCTGGAACTGTATAAAAGTAATAAAAAATCAGTTCTATATTGTCAAATATTTTTAGAACGTATTTGAAATAGTCAGTGTCAAAGAAAAATTGTTTGATTCTCAATAGTACCATTTAAACTGGAAAAGAGAACTGATTTACACTTACTAACAATTAGTGGAGTGATATCCTTAGTTCTTTGGCATAGCTGTTCAATTTGTTATGAAGGATTATTATCACTGCCTCTTGTTCTTGCATATGCAGTATTTAATTCTTCTCTATCTCTTTGCCCTTTTTGCAGTGTTCCAACGGTCACACACTGTGTTCTGGTTGCAAACC-TAGGGTTCACAATCGCTGTCCAACATGTCGGCATGAACTTGGTAATATCCGATGTCTTGCGTTGGAGAAGGTTGCTGCATCTCTTGAACTCCCATGTAAATACCAGAACTTTGGATGCATAGGCATCATTCCTTACTACAGCAAGCTAAAGCATGAGTC</genome_strand>
        <mrna_strand>AGCATTACAAGAGCAATGACAACTGTAAGTCCTTATTTTGATGACTTGCGATGTCAACCTGAGGTCATTCATCCTCCACAAAACGAAGACTGCATGGACATTGGTGAACATATGAATGAGCCTGCTCAACATACAGCAAAACCTAATGTGACTGTTTCCAGTAGTGTTCGTGAATTGTTGGAATGCCCTGTATGCTTAAATGCTATGTATCCACCCATCCATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCAACGGTCACACACTGTGTTCTGGTTGCAAACCTTAGGGTTCACAATCGCTGTCCAACATGTCGGCATGAACTTGGTAATATCCGATGTCTTGCGTTGGAGAAGGTTGCTGCATCTCTTGAACTCCCATGTAAATACCAGAACTTTGGATGCATAGGCATCATTCCTTACTACAGNCAGCTAAAGCATGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217410" ref_strand="+" ref_description="SGN-E217410 [cLEL-21-J5](-)">
      <seq>caaggggtacctcgaagcatcagggacagttaccgtaaggttcgagacagttttgatggcctcatcattcagcgtaatatggcgctcttcttttctggtggagaccggaaagaactgaagctcagagttactggtaggatatggaaagaacaatgacgtccattgtagcagtacacttgtagttgtagcagttcatgtactgttttagtccaagaagtaggtttttatttatctagcaatcagttaaaagtcttctgatcaatgtattttcttgatcaagaagcaacctctatttgctttgtccatgattaaaatacattagtgagaaggcctacgtcagtttgtagaatgtgtcttgctgtaggttgtgtattacttactgtcacagtaaaaaatctgtatccatgaaagttctctttattgaaattcaataagttagtttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="32573" stop="122301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32873" g_stop="33334" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E217410" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32873" e_stop="33334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGGGTACCTCGAAGCATCAGGGACAGTTACCGTAAGGTTCGAGACAGTTTTGATGGCCTCATCATTCAGCGTAATATGGCGCTCTTCTTTTCTGGTGGAGACCGGAAAGAACTGAAGCTCAGAGTTACTGGTAGGATATGGAAAGAACAATGACGTCCATTGTAGCAGTACACTTGTAGTTGTAGCAGTTGATGTACTGTTTTAGTCCAAGAAGTAGGTTTTTATTTATCTAGCAATCAGTTAAAAGTCTTCTGATCAATGTATTTTCTTGAACAAGAAGCAACCTCTCTTTGCTTTGTCCATGATTAAAATACATTAGTGAGAAGGCCTACGTCAGTTTGTAGAATGTGTCTTGCTGTAGGTTGTGTATTACTTACTGTCACAGTAAAAAATCTGTATCCATGAAAGTTCTCTTTATTGAAATTCAATAAGTTAGTTTAACCAAAAGGGGACAAGTAA</genome_strand>
        <mrna_strand>CAAGGGGTACCTCGAAGCATCAGGGACAGTTACCGTAAGGTTCGAGACAGTTTTGATGGCCTCATCATTCAGCGTAATATGGCGCTCTTCTTTTCTGGTGGAGACCGGAAAGAACTGAAGCTCAGAGTTACTGGTAGGATATGGAAAGAACAATGACGTCCATTGTAGCAGTACACTTGTAGTTGTAGCAGTTCATGTACTGTTTTAGTCCAAGAAGTAGGTTTTTATTTATCTAGCAATCAGTTAAAAGTCTTCTGATCAATGTATTTTCTTGATCAAGAAGCAACCTCTATTTGCTTTGTCCATGATTAAAATACATTAGTGAGAAGGCCTACGTCAGTTTGTAGAATGTGTCTTGCTGTAGGTTGTGTATTACTTACTGTCACAGTAAAAAATCTGTATCCATGAAAGTTCTCTTTATTGAAATTCAATAAGTTAGTTTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722694" ref_strand="+" ref_description="SGN-E722694 [FC18AB04]">
      <seq>aatcggccgaattgatcttctcaaacgagatttccaattcaaatttaatcatattatattaatatcaatataaatatcatataaatctaaatttaattatgctctcagaaaataaaggatgacaaaaagaatagtaacagttacaaacacgtagtaaagctctctctagagaaggaaattcaacagagaacaccaaaattaaagctgcttattggttttcgtatacacgaagctcttcccgaaaggtttgttactttggagattctgtggcaagcagcattatgacgtcctcgcttcattatcattcaaatggtagtgagaatgaacagtcagaaaatcaatcagaagcccacagcgagtcttcatcgcctgcagctggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatggctcaaacagcttatccatatccagacccatactataggagcatctttgcaccgtatgatccacaaccttatcctccacaaccttatccagcacaaccaatggttcacgttcagctaatgggaattcaacaagcgggtgttcctttgccatcagatgcgatagacgaacctgtttttgttaatgcaaaacagtatcatggcatcttgaggcgtcgacaatctcgcgcgaaagctgagtcagaaaagaaacttctgaaagctaggaagcacgaataccttgggaggctcacagtgcaaaataatcttgcagccttacttgcatgaatcacgacatttgcatgcattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="33839" stop="39891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34144" g_stop="34378" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="245" r_length="235" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35097" g_stop="35160" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="309" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35912" g_stop="36057" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="455" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36058" i_stop="37960" i_length="1903">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37961" g_stop="38062" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="557" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38153" g_stop="38317" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="722" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38318" i_stop="39509" i_length="1192">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39510" g_stop="39591" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="804" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E722694" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34144" e_stop="34378"/>
          <exon e_start="35097" e_stop="35160"/>
          <exon e_start="35912" e_stop="36057"/>
          <exon e_start="37961" e_stop="38062"/>
          <exon e_start="38153" e_stop="38317"/>
          <exon e_start="39510" e_stop="39591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATCTTCTCAAACGAGATTTCCAATTCAAATTTAATCATATTATATTAATATCAATATAAATATCATATAAATCTAAATTTAATTATGCTCTCAGAAAATAAAGGATGACAAAAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAGGTAATTTTTCTTCTTCCTCTATTTAAAAATCCACTAGTAAAGTGGATTTTGGAATCGAAAATTGAGGAATTGAGCTTCGTAATTTGTGTGTTTTGCGTTCATATTTGAGCTGTTTCACTGTTCAGTTGCTGTTTACGGTGAATTCGATGTACGCCTGTTATTTGGATTGATTTTTTAATTTTTTTGTTTTTTTTTATGAAATTGAGTTTAGATGCTGAAAAAGTTGAGATGTAATACGCTGAATTCGTTAACTCATTGTATGATTAATTGAATTTCATTTAGATTTACATGTTTTTGCAGAAAGAAAATGAAGAAATTTCAAAAGGAATGGAAAATTGGATTTGAGCTTGGCAATTTCTGTTATTTGTTGTTTCCCTGATAATTAAAACTTTTTTCCTTACATAGTTAATTGAGGTTTGAACCGGAATATGTGAAAATCATATAAATTTAAGGCTTTTTGTAGTTTGAAAGATGAAAAATATGAAGTGGAATGTATCTGATTTAATTTCACAAGTAATTTGGCTTTGTGGCATGGATATTTGAAGGAAATGGTTTTATGTGTAGAAATGTTGACACATGACAATCGAAGAAGTCTGATCATTATATCTGAAGGTTGAATTCAAATTTTATAGTATGATTTTTTTATGCTCCTGGATGTATATTTTGTGGGACAGAGTGAACTTTTATTTTGCTGATCCATCTTTTGTTAACTGCATAGGTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTGTTTTACAAGCTTGTGTTATTTTATAACTAATTCTCTAGGCATTACTTCGTTTTCAGATTGCTCGATCTGTTTGTCACTCTCTACAACTGCACTTGCCACAATTTGGCTAAAATTTTCTTGTAGGTCTACTGGCCTAGAGTTTCATATAAGGTAAGTCTTTGTCCTATAGGAGGGTTACACTAGCAGAATTCTTTGAACACCATGGATAAGCTGATCTGAATCAACTAGACTCTTTATGCAGCAGCTTGAGCTTGAAGCATATAGTTAGTTACATAGTAAACACTTTTAAAATGCAATCCTTTTAAATTTTGCCATCTTTTCAGCTTTGTGAATGGAATTTAGTGCTAAAATTGTAAATCCATTGTTCCCTGTTTGGACTGCTGCATAAAGATTTTCCTGGATTAACCTGGAGCTGGATGTTTTATCTCCCTCCCTCCATTTGGCACACATAATAACCTGCAATCTTAAGTATTCTTAGTAGGACACTTATTTTTATTGGACACCTTAAACTAGAGGCTTCTGATAGAGATTGCAGATCTTTAAGGTACCAGTTGGGGAATATTTGAAGCCTGTTTCTATGCCTACTAATTTTATATTTAAGCTCTGTGATTGGTTATATCGAGTCTATTTTTCGGATAATAAATCTGCATCAATTTTTCATTAGTTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATGGTATTACATTTTCATAACACTTCTCATTTGGACTTCATCTATGAAATATCCCTATGAATTTGAGAGCTTAGTTGTGTCATTTTCTGTCAGGTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAGGTATTTTGTCGAAAAATATTTTTCTGTATTTTTATTTGTTATACTATGTTGCTTTAGTATCCAATATTGCAATTTACAGGCAACCTTGACAGCTTGTTTGTGGTTCATCTGTTGATTTATCACTTCCTACTGTTAAGTGCTAAATAGCCTCCCAGATGATTCATGTTTGTGATGAACATATTTTAAGTGTCTGTGCATCTCTAGTGCTATTTTAAACACATACAGGGGTCGCTTGGTTCACTTATTAGCTATTTTAGAATTATATATATGAAATATTATGCCATTAATAATATATAGAAATTATTATGCAGTGAATAATGATGCGAGGGTTGTTACACATCAAAAAATAATATAGGGATTCTTATTCAGGGATATCTACTATGAGAGCATCTTTCTCAATATATCCCACATAAAATATTACATAGGTTTCTGCATAATTTAGGCCAATATTAGTAGTGCACACTTTAATTCTGGAAATATAAAGGCAATTTAGTAATGTAGAGTTCTATGTTGCAATCATATTTGTTACACAGAATTTTATATCATGATTGGATTTCCTTATGAGTCCCAATCAAACGACAAAACCATAAAATTTCCTTTACTAATAATATATACTGCAAGTGAAGTGTGGATAGCAGAGCATGAGAGAGACAGTAGAGCAAGTTCTCAAATGTATATTTTTTCTGGACTGTAACTATAATCTCCTCTATTTACAGTTGCTACGCATAAAAATCTAAATAGTTACTAGTATACCATATTAGTTTCACATTACATTGTACAAAGGTTCTGATGCAACAAAAGCTTTTAATTCTAGAACATCTATATTCTATATGATTGATCAATTGCCCATCAAAGTTTATATTGCTCTGATCTTTGGGAAACATAATTTTGATGCATTTTTTAAAAATAAAGTAAAATATTGTTGCTGGAGAACAGAGTGATTCGGTTCCCGATTCGTAATTAAGGATCTTTCTCCAAGCAAAAAATCCATTTTCTCTATGATTAATATGTATATGTCGAAAGTTATGGGTTCTGATCAATAATGTCTTCTACTCCCTAATAAATAGCTCAAAGATGGTTATCAACTGTGCTGGAAACATCTGCAAGATCCAATAACATACAGTTGGTAATAAGGTGCCTTACACCATGATTAGAAGTTCTAATATCTGTTTCTGAGGCTATGTTTTTCCAGCACGAATACCTTGGGAGGCTCACAGTGCAAAATAATCTTGCAGCCTTACTTGCATGAATCACGACATTTGCATGCATTGAAA</genome_strand>
        <mrna_strand>ATTGATCTTCTCAAACGAGATTTCCAATTCAAATTTAATCATATTATATTAATATCAATATAAATATCATATAAATCTAAATTTAATTATGCTCTCAGAAAATAAAGGATGACAAAAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATG..........................................................................................GTTCACGTTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAATACCTTGGGAGGCTCACAGTGCAAAATAATCTTGCAGCCTTACTTGCATGAATCACGACATTTGCATGCATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298505" ref_strand="+" ref_description="SGN-E298505 [cLET-41-I20]">
      <seq>aaaataaaggatgacaaaacgtaatagtaacagttacaaacacgtagtaaagctctctctagagaaggaaattcaacagagaacaccaaaattaaagctgcttattggttttcgtatacacgaagctcttcccgaaaggtttgttactttggagattctgtggcaagcagcattatgacgtcctcgcttcattatcattcagatggtagtgagaatgaacagtcagaaaatcaatcagaagcccacagcgagtcttcatcgcctgcagctggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatgagacaccactttgacatttgtaacatccaacatgaaaccgcatatatttcttgcccaaatagttggttgtgcaaaagcctgaaagccaagttgatcataaatatcttaatgtggggcataatggagctatgattgtgcttatggattcttgtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="33942" stop="36880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34242" g_stop="34378" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35097" g_stop="35160" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="202" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35912" g_stop="36057" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="348" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36058" i_stop="36424" i_length="367">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36425" g_stop="36580" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="504" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E298505" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34242" e_stop="34378"/>
          <exon e_start="35097" e_stop="35160"/>
          <exon e_start="35912" e_stop="36057"/>
          <exon e_start="36425" e_stop="36580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAAGGATGACAAAAAG-AATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAGGTAATTTTTCTTCTTCCTCTATTTAAAAATCCACTAGTAAAGTGGATTTTGGAATCGAAAATTGAGGAATTGAGCTTCGTAATTTGTGTGTTTTGCGTTCATATTTGAGCTGTTTCACTGTTCAGTTGCTGTTTACGGTGAATTCGATGTACGCCTGTTATTTGGATTGATTTTTTAATTTTTTTGTTTTTTTTTATGAAATTGAGTTTAGATGCTGAAAAAGTTGAGATGTAATACGCTGAATTCGTTAACTCATTGTATGATTAATTGAATTTCATTTAGATTTACATGTTTTTGCAGAAAGAAAATGAAGAAATTTCAAAAGGAATGGAAAATTGGATTTGAGCTTGGCAATTTCTGTTATTTGTTGTTTCCCTGATAATTAAAACTTTTTTCCTTACATAGTTAATTGAGGTTTGAACCGGAATATGTGAAAATCATATAAATTTAAGGCTTTTTGTAGTTTGAAAGATGAAAAATATGAAGTGGAATGTATCTGATTTAATTTCACAAGTAATTTGGCTTTGTGGCATGGATATTTGAAGGAAATGGTTTTATGTGTAGAAATGTTGACACATGACAATCGAAGAAGTCTGATCATTATATCTGAAGGTTGAATTCAAATTTTATAGTATGATTTTTTTATGCTCCTGGATGTATATTTTGTGGGACAGAGTGAACTTTTATTTTGCTGATCCATCTTTTGTTAACTGCATAGGTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCT</genome_strand>
        <mrna_strand>AAAATAAAGGATGACAAAACGTAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG...............................................................................................................................................................................................................................................................................................................................................................................AGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746269" ref_strand="+" ref_description="SGN-E746269 [GI|47104785]">
      <seq>aaaagaatagtaacagttacaaacacgtagtaaagctctctctagagaaggaaattcaacagagaacaccaaaattaaagctgcttattggttttcgtatacacgaagctcttcccgaaaggtttgttactttggagattctgtggcaagcagcattatgacgtcctcgcttcattatcattcagatggtagtgagaatgaacagtcagaaaatcaatcagaagcccacagcgagtcttcatcgcctgcagctggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatgttgcaggctcaaacagcttatccatatccagacccatactataggagcatctttgcaccgtatgatgcacagccttatcctccacaaccttatccagcacaaccaatggttcacgttcagctaatgggaattcaacaagcgggtgttcctttgccatcagatgcgatagacgaacctgtttttgttaatgcaaaacagtatcatggcatcttgaggcgtcgacaatctcgcgcgaaagctgagtcagaaaagaaacttctgaaagctaggaagccttacttgcatgaatcacgccatttgcatgcattgaaaagagctagaggatgtggaggtcgtttcctgacagcaaaggaaactgataatcagcagaaacaggatgaatctggtgataaatctcaagtcaacattaatctcgagtctggaaaagacaaggtcgcttcttcagagaatgcctcttgatctatgcaatatcaaggactttgtggaccatagtatgttgttactgtttgtagaaacagcagtgcttttgtttaaatagaattgtggtagctgggcaaaatcagggtaattgtggtgttctgtatgtttatctgagtgtagatagatcggaataggcctactcgtttgagagctacaaagtggccgctgggcgtatgttctctaaataccatctctctgagcttgtttgtagacattctttcttgtcctttcgtaattgccttgtgattccttcaaaatgttgttctggtaagtgtatggaatatcgagtcagaaatttgagtaataacgtttggcactacgttttgttagtttaagaagataagcgtgcagcactgttggttgatgaattctaattttccaaggtcaatgcattctgtgtcaatatcttggttatctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="33958" stop="122298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34258" g_stop="34378" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35097" g_stop="35160" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="185" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35912" g_stop="36057" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="331" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36058" i_stop="37954" i_length="1897">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37955" g_stop="38062" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="439" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38153" g_stop="38317" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="604" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38318" i_stop="39552" i_length="1235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39553" g_stop="40192" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="1244" r_length="640" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E746269" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34258" e_stop="34378"/>
          <exon e_start="35097" e_stop="35160"/>
          <exon e_start="35912" e_stop="36057"/>
          <exon e_start="37955" e_stop="38062"/>
          <exon e_start="38153" e_stop="38317"/>
          <exon e_start="39553" e_stop="40192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAGGTAATTTTTCTTCTTCCTCTATTTAAAAATCCACTAGTAAAGTGGATTTTGGAATCGAAAATTGAGGAATTGAGCTTCGTAATTTGTGTGTTTTGCGTTCATATTTGAGCTGTTTCACTGTTCAGTTGCTGTTTACGGTGAATTCGATGTACGCCTGTTATTTGGATTGATTTTTTAATTTTTTTGTTTTTTTTTATGAAATTGAGTTTAGATGCTGAAAAAGTTGAGATGTAATACGCTGAATTCGTTAACTCATTGTATGATTAATTGAATTTCATTTAGATTTACATGTTTTTGCAGAAAGAAAATGAAGAAATTTCAAAAGGAATGGAAAATTGGATTTGAGCTTGGCAATTTCTGTTATTTGTTGTTTCCCTGATAATTAAAACTTTTTTCCTTACATAGTTAATTGAGGTTTGAACCGGAATATGTGAAAATCATATAAATTTAAGGCTTTTTGTAGTTTGAAAGATGAAAAATATGAAGTGGAATGTATCTGATTTAATTTCACAAGTAATTTGGCTTTGTGGCATGGATATTTGAAGGAAATGGTTTTATGTGTAGAAATGTTGACACATGACAATCGAAGAAGTCTGATCATTATATCTGAAGGTTGAATTCAAATTTTATAGTATGATTTTTTTATGCTCCTGGATGTATATTTTGTGGGACAGAGTGAACTTTTATTTTGCTGATCCATCTTTTGTTAACTGCATAGGTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTGTTTTACAAGCTTGTGTTATTTTATAACTAATTCTCTAGGCATTACTTCGTTTTCAGATTGCTCGATCTGTTTGTCACTCTCTACAACTGCACTTGCCACAATTTGGCTAAAATTTTCTTGTAGGTCTACTGGCCTAGAGTTTCATATAAGGTAAGTCTTTGTCCTATAGGAGGGTTACACTAGCAGAATTCTTTGAACACCATGGATAAGCTGATCTGAATCAACTAGACTCTTTATGCAGCAGCTTGAGCTTGAAGCATATAGTTAGTTACATAGTAAACACTTTTAAAATGCAATCCTTTTAAATTTTGCCATCTTTTCAGCTTTGTGAATGGAATTTAGTGCTAAAATTGTAAATCCATTGTTCCCTGTTTGGACTGCTGCATAAAGATTTTCCTGGATTAACCTGGAGCTGGATGTTTTATCTCCCTCCCTCCATTTGGCACACATAATAACCTGCAATCTTAAGTATTCTTAGTAGGACACTTATTTTTATTGGACACCTTAAACTAGAGGCTTCTGATAGAGATTGCAGATCTTTAAGGTACCAGTTGGGGAATATTTGAAGCCTGTTTCTATGCCTACTAATTTTATATTTAAGCTCTGTGATTGGTTATATCGAGTCTATTTTTCGGATAATAAATCTGCATCAATTTTTCATTAGTTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATGGTATTACATTTTCATAACACTTCTCATTTGGACTTCATCTATGAAATATCCCTATGAATTTGAGAGCTTAGTTGTGTCATTTTCTGTCAGGTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAGGTATTTTGTCGAAAAATATTTTTCTGTATTTTTATTTGTTATACTATGTTGCTTTAGTATCCAATATTGCAATTTACAGGCAACCTTGACAGCTTGTTTGTGGTTCATCTGTTGATTTATCACTTCCTACTGTTAAGTGCTAAATAGCCTCCCAGATGATTCATGTTTGTGATGAACATATTTTAAGTGTCTGTGCATCTCTAGTGCTATTTTAAACACATACAGGGGTCGCTTGGTTCACTTATTAGCTATTTTAGAATTATATATATGAAATATTATGCCATTAATAATATATAGAAATTATTATGCAGTGAATAATGATGCGAGGGTTGTTACACATCAAAAAATAATATAGGGATTCTTATTCAGGGATATCTACTATGAGAGCATCTTTCTCAATATATCCCACATAAAATATTACATAGGTTTCTGCATAATTTAGGCCAATATTAGTAGTGCACACTTTAATTCTGGAAATATAAAGGCAATTTAGTAATGTAGAGTTCTATGTTGCAATCATATTTGTTACACAGAATTTTATATCATGATTGGATTTCCTTATGAGTCCCAATCAAACGACAAAACCATAAAATTTCCTTTACTAATAATATATACTGCAAGTGAAGTGTGGATAGCAGAGCATGAGAGAGACAGTAGAGCAAGTTCTCAAATGTATATTTTTTCTGGACTGTAACTATAATCTCCTCTATTTACAGTTGCTACGCATAAAAATCTAAATAGTTACTAGTATACCATATTAGTTTCACATTACATTGTACAAAGGTTCTGATGCAACAAAAGCTTTTAATTCTAGAACATCTATATTCTATATGATTGATCAATTGCCCATCAAAGTTTATATTGCTCTGATCTTTGGGAAACATAATTTTGATGCATTTTTTAAAAATAAAGTAAAATATTGTTGCTGGAGAACAGAGTGATTCGGTTCCCGATTCGTAATTAAGGATCTTTCTCCAAGCAAAAAATCCATTTTCTCTATGATTAATATGTATATGTCGAAAGTTATGGGTTCTGATCAATAATGTCTTCTACTCCCTAATAAATAGCTCAAAGATGGTTATCAACTGTGCTGGAAACATCTGCAAGATCCAATAACATACAGTTGGTAATAAGGTGCCTTACACCATGATTAGAAGTTCTAATATCTGTTTCTGAGGCTATGTTTTTCCAGCACGAATACCTTGGGAGGCTCACAGTGCAAAATAATCTTGCAGCCTTACTTGCATGAATCACGACATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAAACTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTAAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCCTTCAAAATGTTGTTCTAGTAAGTGTATGGAATATCGAGTCAGAAATTTGAGTAATAACGTTTGGCACTACGTTTTGTTAGTTTAAGAAGATAAGCGTGCAGCACTGTTGGTTGATGAATTCTAATTTTCCAAGGTCAATGCATTCTGTGTCAATATCTTGGTTATCTATAACCATATCCGCTG</genome_strand>
        <mrna_strand>AAAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATGCACAGCCTTATCCTCCACAACCTTATCCAGCACAACCAATG..........................................................................................GTTCACGTTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACTTGCATGAATCACGCCATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAATCTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTTAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCCTTCAAAATGTTGTTCTGGTAAGTGTATGGAATATCGAGTCAGAAATTTGAGTAATAACGTTTGGCACTACGTTTTGTTAGTTTAAGAAGATAAGCGTGCAGCACTGTTGGTTGATGAATTCTAATTTTCCAAGGTCAATGCATTCTGTGTCAATATCTTGGTTATCTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272746" ref_strand="+" ref_description="SGN-E272746 [cLEM-21-H21]">
      <seq>aaagaatagtaacagttacaaacacgtagtaaagctctctctagagaaggaaattcaacagagaacaccaaaattaaagctgcttattggttttcgtatacacgaagctcttcccgaaaggtttgttactttggagattctgtggcaagcagcattatgacgtcctcgcttcattatcattcagatggtagtgagaatgaacagtcagaaaatcaatcagaagcccacagcgagtcttcatcgcctgcagctggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatgttgcaggctcaaacagcttatccatatccagacccatactataggagcatctttgcaccgtatgatgcacagccttatcctccacaaccttatccagcacaaccaatggttcacgttcagctaatgggaattcaacaagcgggtgttcctttgccatcagatgcgatagacgaacctgtttttgttaatgcaaaacagtatcatggcatcttgaggcgtcgacaatctcgcgcgaaagctgagtcagaaaagaaacttctgaaagctaggaagccttacttgcatgaatcacgccatttgcatgcattgaaaagagctagaggatgttggaggtcgtttcctgacagcaaaggaaactgataatcagcagaaacagggatgaatctggtgataaatctcaagtcaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="33959" stop="39987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34259" g_stop="34378" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35097" g_stop="35160" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="184" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35912" g_stop="36057" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="330" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36058" i_stop="37954" i_length="1897">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37955" g_stop="38062" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="438" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38153" g_stop="38317" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="603" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38318" i_stop="39552" i_length="1235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39553" g_stop="39687" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="740" r_length="137" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E272746" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34259" e_stop="34378"/>
          <exon e_start="35097" e_stop="35160"/>
          <exon e_start="35912" e_stop="36057"/>
          <exon e_start="37955" e_stop="38062"/>
          <exon e_start="38153" e_stop="38317"/>
          <exon e_start="39553" e_stop="39687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAGGTAATTTTTCTTCTTCCTCTATTTAAAAATCCACTAGTAAAGTGGATTTTGGAATCGAAAATTGAGGAATTGAGCTTCGTAATTTGTGTGTTTTGCGTTCATATTTGAGCTGTTTCACTGTTCAGTTGCTGTTTACGGTGAATTCGATGTACGCCTGTTATTTGGATTGATTTTTTAATTTTTTTGTTTTTTTTTATGAAATTGAGTTTAGATGCTGAAAAAGTTGAGATGTAATACGCTGAATTCGTTAACTCATTGTATGATTAATTGAATTTCATTTAGATTTACATGTTTTTGCAGAAAGAAAATGAAGAAATTTCAAAAGGAATGGAAAATTGGATTTGAGCTTGGCAATTTCTGTTATTTGTTGTTTCCCTGATAATTAAAACTTTTTTCCTTACATAGTTAATTGAGGTTTGAACCGGAATATGTGAAAATCATATAAATTTAAGGCTTTTTGTAGTTTGAAAGATGAAAAATATGAAGTGGAATGTATCTGATTTAATTTCACAAGTAATTTGGCTTTGTGGCATGGATATTTGAAGGAAATGGTTTTATGTGTAGAAATGTTGACACATGACAATCGAAGAAGTCTGATCATTATATCTGAAGGTTGAATTCAAATTTTATAGTATGATTTTTTTATGCTCCTGGATGTATATTTTGTGGGACAGAGTGAACTTTTATTTTGCTGATCCATCTTTTGTTAACTGCATAGGTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTGTTTTACAAGCTTGTGTTATTTTATAACTAATTCTCTAGGCATTACTTCGTTTTCAGATTGCTCGATCTGTTTGTCACTCTCTACAACTGCACTTGCCACAATTTGGCTAAAATTTTCTTGTAGGTCTACTGGCCTAGAGTTTCATATAAGGTAAGTCTTTGTCCTATAGGAGGGTTACACTAGCAGAATTCTTTGAACACCATGGATAAGCTGATCTGAATCAACTAGACTCTTTATGCAGCAGCTTGAGCTTGAAGCATATAGTTAGTTACATAGTAAACACTTTTAAAATGCAATCCTTTTAAATTTTGCCATCTTTTCAGCTTTGTGAATGGAATTTAGTGCTAAAATTGTAAATCCATTGTTCCCTGTTTGGACTGCTGCATAAAGATTTTCCTGGATTAACCTGGAGCTGGATGTTTTATCTCCCTCCCTCCATTTGGCACACATAATAACCTGCAATCTTAAGTATTCTTAGTAGGACACTTATTTTTATTGGACACCTTAAACTAGAGGCTTCTGATAGAGATTGCAGATCTTTAAGGTACCAGTTGGGGAATATTTGAAGCCTGTTTCTATGCCTACTAATTTTATATTTAAGCTCTGTGATTGGTTATATCGAGTCTATTTTTCGGATAATAAATCTGCATCAATTTTTCATTAGTTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATGGTATTACATTTTCATAACACTTCTCATTTGGACTTCATCTATGAAATATCCCTATGAATTTGAGAGCTTAGTTGTGTCATTTTCTGTCAGGTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAGGTATTTTGTCGAAAAATATTTTTCTGTATTTTTATTTGTTATACTATGTTGCTTTAGTATCCAATATTGCAATTTACAGGCAACCTTGACAGCTTGTTTGTGGTTCATCTGTTGATTTATCACTTCCTACTGTTAAGTGCTAAATAGCCTCCCAGATGATTCATGTTTGTGATGAACATATTTTAAGTGTCTGTGCATCTCTAGTGCTATTTTAAACACATACAGGGGTCGCTTGGTTCACTTATTAGCTATTTTAGAATTATATATATGAAATATTATGCCATTAATAATATATAGAAATTATTATGCAGTGAATAATGATGCGAGGGTTGTTACACATCAAAAAATAATATAGGGATTCTTATTCAGGGATATCTACTATGAGAGCATCTTTCTCAATATATCCCACATAAAATATTACATAGGTTTCTGCATAATTTAGGCCAATATTAGTAGTGCACACTTTAATTCTGGAAATATAAAGGCAATTTAGTAATGTAGAGTTCTATGTTGCAATCATATTTGTTACACAGAATTTTATATCATGATTGGATTTCCTTATGAGTCCCAATCAAACGACAAAACCATAAAATTTCCTTTACTAATAATATATACTGCAAGTGAAGTGTGGATAGCAGAGCATGAGAGAGACAGTAGAGCAAGTTCTCAAATGTATATTTTTTCTGGACTGTAACTATAATCTCCTCTATTTACAGTTGCTACGCATAAAAATCTAAATAGTTACTAGTATACCATATTAGTTTCACATTACATTGTACAAAGGTTCTGATGCAACAAAAGCTTTTAATTCTAGAACATCTATATTCTATATGATTGATCAATTGCCCATCAAAGTTTATATTGCTCTGATCTTTGGGAAACATAATTTTGATGCATTTTTTAAAAATAAAGTAAAATATTGTTGCTGGAGAACAGAGTGATTCGGTTCCCGATTCGTAATTAAGGATCTTTCTCCAAGCAAAAAATCCATTTTCTCTATGATTAATATGTATATGTCGAAAGTTATGGGTTCTGATCAATAATGTCTTCTACTCCCTAATAAATAGCTCAAAGATGGTTATCAACTGTGCTGGAAACATCTGCAAGATCCAATAACATACAGTTGGTAATAAGGTGCCTTACACCATGATTAGAAGTTCTAATATCTGTTTCTGAGGCTATGTTTTTCCAGCACGAATACCTTGGGAGGCTCACAGTGCAAAATAATCTTGCAGCCTTACTTGCATGAATCACGACATTTGCATGCATTGAAAAGAGCTAGAGGATG-TGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACA-GGATGAAACTGGTGATAAATCTCAAGTCAACATT</genome_strand>
        <mrna_strand>AAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATGCACAGCCTTATCCTCCACAACCTTATCCAGCACAACCAATG..........................................................................................GTTCACGTTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACTTGCATGAATCACGCCATTTGCATGCATTGAAAAGAGCTAGAGGATGTTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGGATGAATCTGGTGATAAATCTCAAGTCAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316069" ref_strand="+" ref_description="SGN-E316069 [cTOA-23-B21]">
      <seq>ttacaaacacgtagtaaagctctctctagagaaggaaattcaacagagaacaccaaaattaaagctgcttattggttttcgtatacacgaagctcttcccgaaaggtttgttactttggagattctgtggcaagcagcattatgacgtcctcgcttcattatcattcagatggtagtgagaatgaacagtcagaaaatcaatcagaagcccacagcgagtcttcatcgcctgcagctggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatggctcaaacagcttatccatatccagacccatactataggagcatctttgcaccgtatgatgcacagccttatcctccacaaccttatccagcacaaccaatggttcacgttcagctaatgggaattcaacaagcgggtgttcctttgccatcagatgcgatagacgaacctgtttttgttaatgcaaaacagtatcatggcatcttgaggcgtcgacaatctcgcgcgaaagctgagtcagaaaagaaacttctgaaagctaggaagccttacttgcatgaatcacgccatttgcatgcattgaaaagagctagaggatgtggaggtcgtttcctgacagcaaaggaaactgataatcagcagaaacaggatgaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="33974" stop="39964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34274" g_stop="34378" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35097" g_stop="35160" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="169" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35912" g_stop="36057" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="315" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36058" i_stop="37960" i_length="1903">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37961" g_stop="38062" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="417" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38153" g_stop="38317" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="582" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38318" i_stop="39552" i_length="1235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39553" g_stop="39664" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="694" r_length="112" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E316069" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34274" e_stop="34378"/>
          <exon e_start="35097" e_stop="35160"/>
          <exon e_start="35912" e_stop="36057"/>
          <exon e_start="37961" e_stop="38062"/>
          <exon e_start="38153" e_stop="38317"/>
          <exon e_start="39553" e_stop="39664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAGGTAATTTTTCTTCTTCCTCTATTTAAAAATCCACTAGTAAAGTGGATTTTGGAATCGAAAATTGAGGAATTGAGCTTCGTAATTTGTGTGTTTTGCGTTCATATTTGAGCTGTTTCACTGTTCAGTTGCTGTTTACGGTGAATTCGATGTACGCCTGTTATTTGGATTGATTTTTTAATTTTTTTGTTTTTTTTTATGAAATTGAGTTTAGATGCTGAAAAAGTTGAGATGTAATACGCTGAATTCGTTAACTCATTGTATGATTAATTGAATTTCATTTAGATTTACATGTTTTTGCAGAAAGAAAATGAAGAAATTTCAAAAGGAATGGAAAATTGGATTTGAGCTTGGCAATTTCTGTTATTTGTTGTTTCCCTGATAATTAAAACTTTTTTCCTTACATAGTTAATTGAGGTTTGAACCGGAATATGTGAAAATCATATAAATTTAAGGCTTTTTGTAGTTTGAAAGATGAAAAATATGAAGTGGAATGTATCTGATTTAATTTCACAAGTAATTTGGCTTTGTGGCATGGATATTTGAAGGAAATGGTTTTATGTGTAGAAATGTTGACACATGACAATCGAAGAAGTCTGATCATTATATCTGAAGGTTGAATTCAAATTTTATAGTATGATTTTTTTATGCTCCTGGATGTATATTTTGTGGGACAGAGTGAACTTTTATTTTGCTGATCCATCTTTTGTTAACTGCATAGGTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTGTTTTACAAGCTTGTGTTATTTTATAACTAATTCTCTAGGCATTACTTCGTTTTCAGATTGCTCGATCTGTTTGTCACTCTCTACAACTGCACTTGCCACAATTTGGCTAAAATTTTCTTGTAGGTCTACTGGCCTAGAGTTTCATATAAGGTAAGTCTTTGTCCTATAGGAGGGTTACACTAGCAGAATTCTTTGAACACCATGGATAAGCTGATCTGAATCAACTAGACTCTTTATGCAGCAGCTTGAGCTTGAAGCATATAGTTAGTTACATAGTAAACACTTTTAAAATGCAATCCTTTTAAATTTTGCCATCTTTTCAGCTTTGTGAATGGAATTTAGTGCTAAAATTGTAAATCCATTGTTCCCTGTTTGGACTGCTGCATAAAGATTTTCCTGGATTAACCTGGAGCTGGATGTTTTATCTCCCTCCCTCCATTTGGCACACATAATAACCTGCAATCTTAAGTATTCTTAGTAGGACACTTATTTTTATTGGACACCTTAAACTAGAGGCTTCTGATAGAGATTGCAGATCTTTAAGGTACCAGTTGGGGAATATTTGAAGCCTGTTTCTATGCCTACTAATTTTATATTTAAGCTCTGTGATTGGTTATATCGAGTCTATTTTTCGGATAATAAATCTGCATCAATTTTTCATTAGTTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATGGTATTACATTTTCATAACACTTCTCATTTGGACTTCATCTATGAAATATCCCTATGAATTTGAGAGCTTAGTTGTGTCATTTTCTGTCAGGTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAGGTATTTTGTCGAAAAATATTTTTCTGTATTTTTATTTGTTATACTATGTTGCTTTAGTATCCAATATTGCAATTTACAGGCAACCTTGACAGCTTGTTTGTGGTTCATCTGTTGATTTATCACTTCCTACTGTTAAGTGCTAAATAGCCTCCCAGATGATTCATGTTTGTGATGAACATATTTTAAGTGTCTGTGCATCTCTAGTGCTATTTTAAACACATACAGGGGTCGCTTGGTTCACTTATTAGCTATTTTAGAATTATATATATGAAATATTATGCCATTAATAATATATAGAAATTATTATGCAGTGAATAATGATGCGAGGGTTGTTACACATCAAAAAATAATATAGGGATTCTTATTCAGGGATATCTACTATGAGAGCATCTTTCTCAATATATCCCACATAAAATATTACATAGGTTTCTGCATAATTTAGGCCAATATTAGTAGTGCACACTTTAATTCTGGAAATATAAAGGCAATTTAGTAATGTAGAGTTCTATGTTGCAATCATATTTGTTACACAGAATTTTATATCATGATTGGATTTCCTTATGAGTCCCAATCAAACGACAAAACCATAAAATTTCCTTTACTAATAATATATACTGCAAGTGAAGTGTGGATAGCAGAGCATGAGAGAGACAGTAGAGCAAGTTCTCAAATGTATATTTTTTCTGGACTGTAACTATAATCTCCTCTATTTACAGTTGCTACGCATAAAAATCTAAATAGTTACTAGTATACCATATTAGTTTCACATTACATTGTACAAAGGTTCTGATGCAACAAAAGCTTTTAATTCTAGAACATCTATATTCTATATGATTGATCAATTGCCCATCAAAGTTTATATTGCTCTGATCTTTGGGAAACATAATTTTGATGCATTTTTTAAAAATAAAGTAAAATATTGTTGCTGGAGAACAGAGTGATTCGGTTCCCGATTCGTAATTAAGGATCTTTCTCCAAGCAAAAAATCCATTTTCTCTATGATTAATATGTATATGTCGAAAGTTATGGGTTCTGATCAATAATGTCTTCTACTCCCTAATAAATAGCTCAAAGATGGTTATCAACTGTGCTGGAAACATCTGCAAGATCCAATAACATACAGTTGGTAATAAGGTGCCTTACACCATGATTAGAAGTTCTAATATCTGTTTCTGAGGCTATGTTTTTCCAGCACGAATACCTTGGGAGGCTCACAGTGCAAAATAATCTTGCAGCCTTACTTGCATGAATCACGACATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAAACTG</genome_strand>
        <mrna_strand>TTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATGCACAGCCTTATCCTCCACAACCTTATCCAGCACAACCAATG..........................................................................................GTTCACGTTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACTTGCATGAATCACGCCATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303565" ref_strand="+" ref_description="SGN-E303565 [cLEX-2-P2]">
      <seq>aaacacgtagtaaagctctctctagagaaggaaattcaacagagaacaccaaaattaaagctgcttattggttttcgtatacacgaagctcttcccgaaaggtttgttactttggagattctgtggcaagcagcattatgacgtcctcgcttcattatcattcagatggtagtgagaatgaacagtcagaaaatcaatcagaagcccacagcgagtcttcatcgcctgcagctggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatgttgcaggctcaaacagcttatccatatgcagacccatactataggagcatctttgcaccgtatgatgcacagccttatcctccacaaccttatccagcacaaccaatggttcacgttcagctaatgggaattcaacaagcgggtgttcctttgccatcagatgcgatagacgaacctgtttttgttaatgcaaaacagtatcatggcatcttgaggcgtcgacaatctcgcgcgaaagctgagtcagaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="33978" stop="38599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34278" g_stop="34378" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35097" g_stop="35160" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="165" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35912" g_stop="36057" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="311" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36058" i_stop="37954" i_length="1897">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37955" g_stop="38062" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="419" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38153" g_stop="38299" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="566" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E303565" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34278" e_stop="34378"/>
          <exon e_start="35097" e_stop="35160"/>
          <exon e_start="35912" e_stop="36057"/>
          <exon e_start="37955" e_stop="38062"/>
          <exon e_start="38153" e_stop="38299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAGGTAATTTTTCTTCTTCCTCTATTTAAAAATCCACTAGTAAAGTGGATTTTGGAATCGAAAATTGAGGAATTGAGCTTCGTAATTTGTGTGTTTTGCGTTCATATTTGAGCTGTTTCACTGTTCAGTTGCTGTTTACGGTGAATTCGATGTACGCCTGTTATTTGGATTGATTTTTTAATTTTTTTGTTTTTTTTTATGAAATTGAGTTTAGATGCTGAAAAAGTTGAGATGTAATACGCTGAATTCGTTAACTCATTGTATGATTAATTGAATTTCATTTAGATTTACATGTTTTTGCAGAAAGAAAATGAAGAAATTTCAAAAGGAATGGAAAATTGGATTTGAGCTTGGCAATTTCTGTTATTTGTTGTTTCCCTGATAATTAAAACTTTTTTCCTTACATAGTTAATTGAGGTTTGAACCGGAATATGTGAAAATCATATAAATTTAAGGCTTTTTGTAGTTTGAAAGATGAAAAATATGAAGTGGAATGTATCTGATTTAATTTCACAAGTAATTTGGCTTTGTGGCATGGATATTTGAAGGAAATGGTTTTATGTGTAGAAATGTTGACACATGACAATCGAAGAAGTCTGATCATTATATCTGAAGGTTGAATTCAAATTTTATAGTATGATTTTTTTATGCTCCTGGATGTATATTTTGTGGGACAGAGTGAACTTTTATTTTGCTGATCCATCTTTTGTTAACTGCATAGGTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTGTTTTACAAGCTTGTGTTATTTTATAACTAATTCTCTAGGCATTACTTCGTTTTCAGATTGCTCGATCTGTTTGTCACTCTCTACAACTGCACTTGCCACAATTTGGCTAAAATTTTCTTGTAGGTCTACTGGCCTAGAGTTTCATATAAGGTAAGTCTTTGTCCTATAGGAGGGTTACACTAGCAGAATTCTTTGAACACCATGGATAAGCTGATCTGAATCAACTAGACTCTTTATGCAGCAGCTTGAGCTTGAAGCATATAGTTAGTTACATAGTAAACACTTTTAAAATGCAATCCTTTTAAATTTTGCCATCTTTTCAGCTTTGTGAATGGAATTTAGTGCTAAAATTGTAAATCCATTGTTCCCTGTTTGGACTGCTGCATAAAGATTTTCCTGGATTAACCTGGAGCTGGATGTTTTATCTCCCTCCCTCCATTTGGCACACATAATAACCTGCAATCTTAAGTATTCTTAGTAGGACACTTATTTTTATTGGACACCTTAAACTAGAGGCTTCTGATAGAGATTGCAGATCTTTAAGGTACCAGTTGGGGAATATTTGAAGCCTGTTTCTATGCCTACTAATTTTATATTTAAGCTCTGTGATTGGTTATATCGAGTCTATTTTTCGGATAATAAATCTGCATCAATTTTTCATTAGTTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATGGTATTACATTTTCATAACACTTCTCATTTGGACTTCATCTATGAAATATCCCTATGAATTTGAGAGCTTAGTTGTGTCATTTTCTGTCAGGTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAA</genome_strand>
        <mrna_strand>AAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGCTCAAACAGCTTATCCATATGCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATGCACAGCCTTATCCTCCACAACCTTATCCAGCACAACCAATG..........................................................................................GTTCACGTTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475033" ref_strand="+" ref_description="SGN-E475033 [cSTB-39-E1]">
      <seq>gtctagagaaggaaattcaacagaaaacaccagaaattaaagctgcttattggttttctatacacgaagctcttcccgaaaggtttgttactttggagattctgtggcaagcagcggcatgacgtcctcgattcattatcattcagatggtagtgagaatgaacagtcagaaaatcaatcagaggctcacagcgagtcttcatcccctgcagctggaatgtctgtccctggcactgtaacaccaaatatgcactatgttatgcccaatcaacttggcaatggaaattctatgttgcagggtcaaacagcttatccatatccagacccatactataggagcatctttgcaccgtacgatgcacagccttatcctccacaaccttatccagcacaaccaatggttcacgttcagctaatgggaattcaacaagcgggtgttcctttgccatcagatgcgatagacgaacctgtttttgttaatgcaaaacaatatcatggcatcttgaggcgtcgacaatctcgcgcgaaagctgagtcagaaaagaaacttctgaaagctaggaagccttacttgcatgaatcacgccatttgcatgcattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="33998" stop="39891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34297" g_stop="34378" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.870" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35097" g_stop="35160" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="146" r_length="64" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35912" g_stop="36057" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="292" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36058" i_stop="37954" i_length="1897">
            <donor d_prob="0.871" d_score="0.96"/>
            <acceptor a_prob="0.473" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37955" g_stop="38062" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="400" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38153" g_stop="38317" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="565" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38318" i_stop="39552" i_length="1235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39553" g_stop="39591" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="604" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E475033" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34297" e_stop="34378"/>
          <exon e_start="35097" e_stop="35160"/>
          <exon e_start="35912" e_stop="36057"/>
          <exon e_start="37955" e_stop="38062"/>
          <exon e_start="38153" e_stop="38317"/>
          <exon e_start="39553" e_stop="39591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAGAGAAGGAAATTCAACAGAGAACACCA-AAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAGGTAATTTTTCTTCTTCCTCTATTTAAAAATCCACTAGTAAAGTGGATTTTGGAATCGAAAATTGAGGAATTGAGCTTCGTAATTTGTGTGTTTTGCGTTCATATTTGAGCTGTTTCACTGTTCAGTTGCTGTTTACGGTGAATTCGATGTACGCCTGTTATTTGGATTGATTTTTTAATTTTTTTGTTTTTTTTTATGAAATTGAGTTTAGATGCTGAAAAAGTTGAGATGTAATACGCTGAATTCGTTAACTCATTGTATGATTAATTGAATTTCATTTAGATTTACATGTTTTTGCAGAAAGAAAATGAAGAAATTTCAAAAGGAATGGAAAATTGGATTTGAGCTTGGCAATTTCTGTTATTTGTTGTTTCCCTGATAATTAAAACTTTTTTCCTTACATAGTTAATTGAGGTTTGAACCGGAATATGTGAAAATCATATAAATTTAAGGCTTTTTGTAGTTTGAAAGATGAAAAATATGAAGTGGAATGTATCTGATTTAATTTCACAAGTAATTTGGCTTTGTGGCATGGATATTTGAAGGAAATGGTTTTATGTGTAGAAATGTTGACACATGACAATCGAAGAAGTCTGATCATTATATCTGAAGGTTGAATTCAAATTTTATAGTATGATTTTTTTATGCTCCTGGATGTATATTTTGTGGGACAGAGTGAACTTTTATTTTGCTGATCCATCTTTTGTTAACTGCATAGGTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTGTTTTACAAGCTTGTGTTATTTTATAACTAATTCTCTAGGCATTACTTCGTTTTCAGATTGCTCGATCTGTTTGTCACTCTCTACAACTGCACTTGCCACAATTTGGCTAAAATTTTCTTGTAGGTCTACTGGCCTAGAGTTTCATATAAGGTAAGTCTTTGTCCTATAGGAGGGTTACACTAGCAGAATTCTTTGAACACCATGGATAAGCTGATCTGAATCAACTAGACTCTTTATGCAGCAGCTTGAGCTTGAAGCATATAGTTAGTTACATAGTAAACACTTTTAAAATGCAATCCTTTTAAATTTTGCCATCTTTTCAGCTTTGTGAATGGAATTTAGTGCTAAAATTGTAAATCCATTGTTCCCTGTTTGGACTGCTGCATAAAGATTTTCCTGGATTAACCTGGAGCTGGATGTTTTATCTCCCTCCCTCCATTTGGCACACATAATAACCTGCAATCTTAAGTATTCTTAGTAGGACACTTATTTTTATTGGACACCTTAAACTAGAGGCTTCTGATAGAGATTGCAGATCTTTAAGGTACCAGTTGGGGAATATTTGAAGCCTGTTTCTATGCCTACTAATTTTATATTTAAGCTCTGTGATTGGTTATATCGAGTCTATTTTTCGGATAATAAATCTGCATCAATTTTTCATTAGTTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATGGTATTACATTTTCATAACACTTCTCATTTGGACTTCATCTATGAAATATCCCTATGAATTTGAGAGCTTAGTTGTGTCATTTTCTGTCAGGTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAGGTATTTTGTCGAAAAATATTTTTCTGTATTTTTATTTGTTATACTATGTTGCTTTAGTATCCAATATTGCAATTTACAGGCAACCTTGACAGCTTGTTTGTGGTTCATCTGTTGATTTATCACTTCCTACTGTTAAGTGCTAAATAGCCTCCCAGATGATTCATGTTTGTGATGAACATATTTTAAGTGTCTGTGCATCTCTAGTGCTATTTTAAACACATACAGGGGTCGCTTGGTTCACTTATTAGCTATTTTAGAATTATATATATGAAATATTATGCCATTAATAATATATAGAAATTATTATGCAGTGAATAATGATGCGAGGGTTGTTACACATCAAAAAATAATATAGGGATTCTTATTCAGGGATATCTACTATGAGAGCATCTTTCTCAATATATCCCACATAAAATATTACATAGGTTTCTGCATAATTTAGGCCAATATTAGTAGTGCACACTTTAATTCTGGAAATATAAAGGCAATTTAGTAATGTAGAGTTCTATGTTGCAATCATATTTGTTACACAGAATTTTATATCATGATTGGATTTCCTTATGAGTCCCAATCAAACGACAAAACCATAAAATTTCCTTTACTAATAATATATACTGCAAGTGAAGTGTGGATAGCAGAGCATGAGAGAGACAGTAGAGCAAGTTCTCAAATGTATATTTTTTCTGGACTGTAACTATAATCTCCTCTATTTACAGTTGCTACGCATAAAAATCTAAATAGTTACTAGTATACCATATTAGTTTCACATTACATTGTACAAAGGTTCTGATGCAACAAAAGCTTTTAATTCTAGAACATCTATATTCTATATGATTGATCAATTGCCCATCAAAGTTTATATTGCTCTGATCTTTGGGAAACATAATTTTGATGCATTTTTTAAAAATAAAGTAAAATATTGTTGCTGGAGAACAGAGTGATTCGGTTCCCGATTCGTAATTAAGGATCTTTCTCCAAGCAAAAAATCCATTTTCTCTATGATTAATATGTATATGTCGAAAGTTATGGGTTCTGATCAATAATGTCTTCTACTCCCTAATAAATAGCTCAAAGATGGTTATCAACTGTGCTGGAAACATCTGCAAGATCCAATAACATACAGTTGGTAATAAGGTGCCTTACACCATGATTAGAAGTTCTAATATCTGTTTCTGAGGCTATGTTTTTCCAGCACGAATACCTTGGGAGGCTCACAGTGCAAAATAATCTTGCAGCCTTACTTGCATGAATCACGACATTTGCATGCATTGAAA</genome_strand>
        <mrna_strand>GTCTAGAGAAGGAAATTCAACAGAAAACACCAGAAATTAAAGCTGCTTATTGGTTTTC-TATACACGAAGCTCTTCCCGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCGGCATGACGTCCTCGATTCATTATCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAGGCTCACAGCGAGTCTTCATCCCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACACCAAATATGCACTATGTTATGCCCAATCAACTTGGCAATGGAAATTCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGGTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTACGATGCACAGCCTTATCCTCCACAACCTTATCCAGCACAACCAATG..........................................................................................GTTCACGTTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAATATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACTTGCATGAATCACGCCATTTGCATGCATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405649" ref_strand="+" ref_description="SGN-E405649 [PPI-1-M19]">
      <seq>gaaggaaattcaacagaaaacaccagaaattaaagctgcttattggttttctatacacgaagctcttcccgaaaggtttgttactttggagattctgtggcaagcagcgtcatgacgtcctcgcttcattatcattcagatggtagtgagaatgaacagtcagaaaatcaatcagaggctcacagcgagtcttcatcccctgcagctggaatgtctgtccctggcactgtaacaccaaatatgcactatgttatgcccaatctacttggcaatggaaattctatgatacaggctcaaacagcttatccatatccagacccatactataggagcatcttcgcaccgtacgatgcacagccttatcctccacaaccttatccagcacaaccaatggttcacgttcagctaatgggaattcaacaagcgggtgttcctttgccatcagatgcgatagacgaacctgtttttgttaatgcaaaacagtatcatggcatcttgaggcgtcgacaatctcgcgcgaaagctgattcagaaaagaaacttctgaaagctagaaagccttacttgcatgaatcacgccatttgcatgcattgaaaagagctagaggatgtggggggtcgtttcctgacagcgaaggaaactgataatcagcagaaacaggatgaatctggtgataaatcacacgtcaacattaatctcgagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="34004" stop="39999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34304" g_stop="34378" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.870" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35097" g_stop="35160" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="139" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35912" g_stop="36057" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="285" r_length="146" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36058" i_stop="37954" i_length="1897">
            <donor d_prob="0.871" d_score="0.94"/>
            <acceptor a_prob="0.473" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37955" g_stop="38062" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="393" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38153" g_stop="38317" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="558" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38318" i_stop="39552" i_length="1235">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39553" g_stop="39699" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="706" r_length="148" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E405649" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34304" e_stop="34378"/>
          <exon e_start="35097" e_stop="35160"/>
          <exon e_start="35912" e_stop="36057"/>
          <exon e_start="37955" e_stop="38062"/>
          <exon e_start="38153" e_stop="38317"/>
          <exon e_start="39553" e_stop="39699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAAATTCAACAGAGAACACCA-AAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAGGTAATTTTTCTTCTTCCTCTATTTAAAAATCCACTAGTAAAGTGGATTTTGGAATCGAAAATTGAGGAATTGAGCTTCGTAATTTGTGTGTTTTGCGTTCATATTTGAGCTGTTTCACTGTTCAGTTGCTGTTTACGGTGAATTCGATGTACGCCTGTTATTTGGATTGATTTTTTAATTTTTTTGTTTTTTTTTATGAAATTGAGTTTAGATGCTGAAAAAGTTGAGATGTAATACGCTGAATTCGTTAACTCATTGTATGATTAATTGAATTTCATTTAGATTTACATGTTTTTGCAGAAAGAAAATGAAGAAATTTCAAAAGGAATGGAAAATTGGATTTGAGCTTGGCAATTTCTGTTATTTGTTGTTTCCCTGATAATTAAAACTTTTTTCCTTACATAGTTAATTGAGGTTTGAACCGGAATATGTGAAAATCATATAAATTTAAGGCTTTTTGTAGTTTGAAAGATGAAAAATATGAAGTGGAATGTATCTGATTTAATTTCACAAGTAATTTGGCTTTGTGGCATGGATATTTGAAGGAAATGGTTTTATGTGTAGAAATGTTGACACATGACAATCGAAGAAGTCTGATCATTATATCTGAAGGTTGAATTCAAATTTTATAGTATGATTTTTTTATGCTCCTGGATGTATATTTTGTGGGACAGAGTGAACTTTTATTTTGCTGATCCATCTTTTGTTAACTGCATAGGTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTGTTTTACAAGCTTGTGTTATTTTATAACTAATTCTCTAGGCATTACTTCGTTTTCAGATTGCTCGATCTGTTTGTCACTCTCTACAACTGCACTTGCCACAATTTGGCTAAAATTTTCTTGTAGGTCTACTGGCCTAGAGTTTCATATAAGGTAAGTCTTTGTCCTATAGGAGGGTTACACTAGCAGAATTCTTTGAACACCATGGATAAGCTGATCTGAATCAACTAGACTCTTTATGCAGCAGCTTGAGCTTGAAGCATATAGTTAGTTACATAGTAAACACTTTTAAAATGCAATCCTTTTAAATTTTGCCATCTTTTCAGCTTTGTGAATGGAATTTAGTGCTAAAATTGTAAATCCATTGTTCCCTGTTTGGACTGCTGCATAAAGATTTTCCTGGATTAACCTGGAGCTGGATGTTTTATCTCCCTCCCTCCATTTGGCACACATAATAACCTGCAATCTTAAGTATTCTTAGTAGGACACTTATTTTTATTGGACACCTTAAACTAGAGGCTTCTGATAGAGATTGCAGATCTTTAAGGTACCAGTTGGGGAATATTTGAAGCCTGTTTCTATGCCTACTAATTTTATATTTAAGCTCTGTGATTGGTTATATCGAGTCTATTTTTCGGATAATAAATCTGCATCAATTTTTCATTAGTTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATGGTATTACATTTTCATAACACTTCTCATTTGGACTTCATCTATGAAATATCCCTATGAATTTGAGAGCTTAGTTGTGTCATTTTCTGTCAGGTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAGGTATTTTGTCGAAAAATATTTTTCTGTATTTTTATTTGTTATACTATGTTGCTTTAGTATCCAATATTGCAATTTACAGGCAACCTTGACAGCTTGTTTGTGGTTCATCTGTTGATTTATCACTTCCTACTGTTAAGTGCTAAATAGCCTCCCAGATGATTCATGTTTGTGATGAACATATTTTAAGTGTCTGTGCATCTCTAGTGCTATTTTAAACACATACAGGGGTCGCTTGGTTCACTTATTAGCTATTTTAGAATTATATATATGAAATATTATGCCATTAATAATATATAGAAATTATTATGCAGTGAATAATGATGCGAGGGTTGTTACACATCAAAAAATAATATAGGGATTCTTATTCAGGGATATCTACTATGAGAGCATCTTTCTCAATATATCCCACATAAAATATTACATAGGTTTCTGCATAATTTAGGCCAATATTAGTAGTGCACACTTTAATTCTGGAAATATAAAGGCAATTTAGTAATGTAGAGTTCTATGTTGCAATCATATTTGTTACACAGAATTTTATATCATGATTGGATTTCCTTATGAGTCCCAATCAAACGACAAAACCATAAAATTTCCTTTACTAATAATATATACTGCAAGTGAAGTGTGGATAGCAGAGCATGAGAGAGACAGTAGAGCAAGTTCTCAAATGTATATTTTTTCTGGACTGTAACTATAATCTCCTCTATTTACAGTTGCTACGCATAAAAATCTAAATAGTTACTAGTATACCATATTAGTTTCACATTACATTGTACAAAGGTTCTGATGCAACAAAAGCTTTTAATTCTAGAACATCTATATTCTATATGATTGATCAATTGCCCATCAAAGTTTATATTGCTCTGATCTTTGGGAAACATAATTTTGATGCATTTTTTAAAAATAAAGTAAAATATTGTTGCTGGAGAACAGAGTGATTCGGTTCCCGATTCGTAATTAAGGATCTTTCTCCAAGCAAAAAATCCATTTTCTCTATGATTAATATGTATATGTCGAAAGTTATGGGTTCTGATCAATAATGTCTTCTACTCCCTAATAAATAGCTCAAAGATGGTTATCAACTGTGCTGGAAACATCTGCAAGATCCAATAACATACAGTTGGTAATAAGGTGCCTTACACCATGATTAGAAGTTCTAATATCTGTTTCTGAGGCTATGTTTTTCCAGCACGAATACCTTGGGAGGCTCACAGTGCAAAATAATCTTGCAGCCTTACTTGCATGAATCACGACATTTGCATGCATTGAAAAGAGCTAGAGGATGT-GGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAAACTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCT</genome_strand>
        <mrna_strand>GAAGGAAATTCAACAGAAAACACCAGAAATTAAAGCTGCTTATTGGTTTTC-TATACACGAAGCTCTTCCCGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCGTCATGACGTCCTCGCTTCATTATCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAGGCTCACAGCGAGTCTTCATCCCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACACCAAATATGCACTATGTTATGCCCAATCTACTTGGCAATGGAAATTCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTCGCACCGTACGATGCACAGCCTTATCCTCCACAACCTTATCCAGCACAACCAATG..........................................................................................GTTCACGTTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGATTCAGAAAAGAAACTTCTGAAAGCTAGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACTTGCATGAATCACGCCATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGGGGGTCGTTTCCTGACAGCGAAGGAAACTGATAATCAGCAGAAACAGGATGAATCTGGTGATAAATCACACGTCAACATTAATCTCGAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260910" ref_strand="+" ref_description="SGN-E260910 [cLEG-55-B1]">
      <seq>gcagcattatgacgtcctcgcttcattatcattcagatggtagtgagaatgaacagtcagaaaatcaatcagaagcccacagcgagtcttcatcgcctgcagctggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatgttgcaggctcaaacagcttatccatatccagacccatactataggagcatctttgcaccgtatgatgcacagccttatcctccacaaccttatccagcacaaccaatggttcacgttcagctaatgggaattcaacaagcgggtgttcctttgccatcagatgcgatagacgaacctgtttttgttaatgcaaaacagtatcatggcatcttgaggcgtcgacaatctcgcgcgaaagctgagtcagaaaagaaacttctgaaagctaggaagccttacttgcatgaatcacgccatttgcatgcattgaaaagagctagaggatgtggaggtcgtttcctgacagcaaaggaaactgataatcagcagaaacaggatgaatctggtgataaatctcaagtcaacattaatctcgagtctggaaaagacaaggtcgcttcttcagagaatgcctcttgatctatgcaatatcaaggactttgtggaccatagtatgttgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="34825" stop="40082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35125" g_stop="35160" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35912" g_stop="36057" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="182" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36058" i_stop="37954" i_length="1897">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37955" g_stop="38062" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="290" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38153" g_stop="38317" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="455" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38318" i_stop="39552" i_length="1235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39553" g_stop="39782" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="685" r_length="230" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E260910" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35125" e_stop="35160"/>
          <exon e_start="35912" e_stop="36057"/>
          <exon e_start="37955" e_stop="38062"/>
          <exon e_start="38153" e_stop="38317"/>
          <exon e_start="39553" e_stop="39782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTGTTTTACAAGCTTGTGTTATTTTATAACTAATTCTCTAGGCATTACTTCGTTTTCAGATTGCTCGATCTGTTTGTCACTCTCTACAACTGCACTTGCCACAATTTGGCTAAAATTTTCTTGTAGGTCTACTGGCCTAGAGTTTCATATAAGGTAAGTCTTTGTCCTATAGGAGGGTTACACTAGCAGAATTCTTTGAACACCATGGATAAGCTGATCTGAATCAACTAGACTCTTTATGCAGCAGCTTGAGCTTGAAGCATATAGTTAGTTACATAGTAAACACTTTTAAAATGCAATCCTTTTAAATTTTGCCATCTTTTCAGCTTTGTGAATGGAATTTAGTGCTAAAATTGTAAATCCATTGTTCCCTGTTTGGACTGCTGCATAAAGATTTTCCTGGATTAACCTGGAGCTGGATGTTTTATCTCCCTCCCTCCATTTGGCACACATAATAACCTGCAATCTTAAGTATTCTTAGTAGGACACTTATTTTTATTGGACACCTTAAACTAGAGGCTTCTGATAGAGATTGCAGATCTTTAAGGTACCAGTTGGGGAATATTTGAAGCCTGTTTCTATGCCTACTAATTTTATATTTAAGCTCTGTGATTGGTTATATCGAGTCTATTTTTCGGATAATAAATCTGCATCAATTTTTCATTAGTTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATGGTATTACATTTTCATAACACTTCTCATTTGGACTTCATCTATGAAATATCCCTATGAATTTGAGAGCTTAGTTGTGTCATTTTCTGTCAGGTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAGGTATTTTGTCGAAAAATATTTTTCTGTATTTTTATTTGTTATACTATGTTGCTTTAGTATCCAATATTGCAATTTACAGGCAACCTTGACAGCTTGTTTGTGGTTCATCTGTTGATTTATCACTTCCTACTGTTAAGTGCTAAATAGCCTCCCAGATGATTCATGTTTGTGATGAACATATTTTAAGTGTCTGTGCATCTCTAGTGCTATTTTAAACACATACAGGGGTCGCTTGGTTCACTTATTAGCTATTTTAGAATTATATATATGAAATATTATGCCATTAATAATATATAGAAATTATTATGCAGTGAATAATGATGCGAGGGTTGTTACACATCAAAAAATAATATAGGGATTCTTATTCAGGGATATCTACTATGAGAGCATCTTTCTCAATATATCCCACATAAAATATTACATAGGTTTCTGCATAATTTAGGCCAATATTAGTAGTGCACACTTTAATTCTGGAAATATAAAGGCAATTTAGTAATGTAGAGTTCTATGTTGCAATCATATTTGTTACACAGAATTTTATATCATGATTGGATTTCCTTATGAGTCCCAATCAAACGACAAAACCATAAAATTTCCTTTACTAATAATATATACTGCAAGTGAAGTGTGGATAGCAGAGCATGAGAGAGACAGTAGAGCAAGTTCTCAAATGTATATTTTTTCTGGACTGTAACTATAATCTCCTCTATTTACAGTTGCTACGCATAAAAATCTAAATAGTTACTAGTATACCATATTAGTTTCACATTACATTGTACAAAGGTTCTGATGCAACAAAAGCTTTTAATTCTAGAACATCTATATTCTATATGATTGATCAATTGCCCATCAAAGTTTATATTGCTCTGATCTTTGGGAAACATAATTTTGATGCATTTTTTAAAAATAAAGTAAAATATTGTTGCTGGAGAACAGAGTGATTCGGTTCCCGATTCGTAATTAAGGATCTTTCTCCAAGCAAAAAATCCATTTTCTCTATGATTAATATGTATATGTCGAAAGTTATGGGTTCTGATCAATAATGTCTTCTACTCCCTAATAAATAGCTCAAAGATGGTTATCAACTGTGCTGGAAACATCTGCAAGATCCAATAACATACAGTTGGTAATAAGGTGCCTTACACCATGATTAGAAGTTCTAATATCTGTTTCTGAGGCTATGTTTTTCCAGCACGAATACCTTGGGAGGCTCACAGTGCAAAATAATCTTGCAGCCTTACTTGCATGAATCACGACATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAAACTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTAC</genome_strand>
        <mrna_strand>GCAGCATTATGACGTCCTCGCTTCATTATCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATGCACAGCCTTATCCTCCACAACCTTATCCAGCACAACCAATG..........................................................................................GTTCACGTTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACTTGCATGAATCACGCCATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAATCTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252153" ref_strand="+" ref_description="SGN-E252153 [cLEG-8-M8]">
      <seq>gcagcattatgacgtcctcgcttcattatcattcagatggtagtgagaatgaacagtcagaaaatcaatcagaagcccacagcgagtcttcatcgcctgcagctggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatgttgcaggctcaaacagcttatccatatccagacccatactataggagcatctttgcaccgtatgatgcacagccttatcctccacaaccttatccagcacaaccaatggttcacgttcagctaatgggaattcaacaagcgggtgttcctttgccatcagatgcgatagacgaacctgtttttgttaatgcaaaacagtatcatggcatcttgaggcgtcgacaatctcgcgcgaaagctgagtcagaaaagaaacttctgaaagctaggaagccttacttgcatgaatcacgccatttgcatgcattgaaaagagctagaggatgtggaggtcgtttcctgacagcaaaggaaactgataatcagcagaaacaggatgaatctggtgataaatctcaagtcaacattaatctcgagtctggaaaagacaaggtcgcttcttcagagaatgcctcttgatctatgcaatatcaaggactttgtggaccatagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="34825" stop="40075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35125" g_stop="35160" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35912" g_stop="36057" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="182" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36058" i_stop="37954" i_length="1897">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37955" g_stop="38062" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="290" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38153" g_stop="38317" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="455" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38318" i_stop="39552" i_length="1235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39553" g_stop="39775" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="678" r_length="223" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E252153" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35125" e_stop="35160"/>
          <exon e_start="35912" e_stop="36057"/>
          <exon e_start="37955" e_stop="38062"/>
          <exon e_start="38153" e_stop="38317"/>
          <exon e_start="39553" e_stop="39775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTGTTTTACAAGCTTGTGTTATTTTATAACTAATTCTCTAGGCATTACTTCGTTTTCAGATTGCTCGATCTGTTTGTCACTCTCTACAACTGCACTTGCCACAATTTGGCTAAAATTTTCTTGTAGGTCTACTGGCCTAGAGTTTCATATAAGGTAAGTCTTTGTCCTATAGGAGGGTTACACTAGCAGAATTCTTTGAACACCATGGATAAGCTGATCTGAATCAACTAGACTCTTTATGCAGCAGCTTGAGCTTGAAGCATATAGTTAGTTACATAGTAAACACTTTTAAAATGCAATCCTTTTAAATTTTGCCATCTTTTCAGCTTTGTGAATGGAATTTAGTGCTAAAATTGTAAATCCATTGTTCCCTGTTTGGACTGCTGCATAAAGATTTTCCTGGATTAACCTGGAGCTGGATGTTTTATCTCCCTCCCTCCATTTGGCACACATAATAACCTGCAATCTTAAGTATTCTTAGTAGGACACTTATTTTTATTGGACACCTTAAACTAGAGGCTTCTGATAGAGATTGCAGATCTTTAAGGTACCAGTTGGGGAATATTTGAAGCCTGTTTCTATGCCTACTAATTTTATATTTAAGCTCTGTGATTGGTTATATCGAGTCTATTTTTCGGATAATAAATCTGCATCAATTTTTCATTAGTTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATGGTATTACATTTTCATAACACTTCTCATTTGGACTTCATCTATGAAATATCCCTATGAATTTGAGAGCTTAGTTGTGTCATTTTCTGTCAGGTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAGGTATTTTGTCGAAAAATATTTTTCTGTATTTTTATTTGTTATACTATGTTGCTTTAGTATCCAATATTGCAATTTACAGGCAACCTTGACAGCTTGTTTGTGGTTCATCTGTTGATTTATCACTTCCTACTGTTAAGTGCTAAATAGCCTCCCAGATGATTCATGTTTGTGATGAACATATTTTAAGTGTCTGTGCATCTCTAGTGCTATTTTAAACACATACAGGGGTCGCTTGGTTCACTTATTAGCTATTTTAGAATTATATATATGAAATATTATGCCATTAATAATATATAGAAATTATTATGCAGTGAATAATGATGCGAGGGTTGTTACACATCAAAAAATAATATAGGGATTCTTATTCAGGGATATCTACTATGAGAGCATCTTTCTCAATATATCCCACATAAAATATTACATAGGTTTCTGCATAATTTAGGCCAATATTAGTAGTGCACACTTTAATTCTGGAAATATAAAGGCAATTTAGTAATGTAGAGTTCTATGTTGCAATCATATTTGTTACACAGAATTTTATATCATGATTGGATTTCCTTATGAGTCCCAATCAAACGACAAAACCATAAAATTTCCTTTACTAATAATATATACTGCAAGTGAAGTGTGGATAGCAGAGCATGAGAGAGACAGTAGAGCAAGTTCTCAAATGTATATTTTTTCTGGACTGTAACTATAATCTCCTCTATTTACAGTTGCTACGCATAAAAATCTAAATAGTTACTAGTATACCATATTAGTTTCACATTACATTGTACAAAGGTTCTGATGCAACAAAAGCTTTTAATTCTAGAACATCTATATTCTATATGATTGATCAATTGCCCATCAAAGTTTATATTGCTCTGATCTTTGGGAAACATAATTTTGATGCATTTTTTAAAAATAAAGTAAAATATTGTTGCTGGAGAACAGAGTGATTCGGTTCCCGATTCGTAATTAAGGATCTTTCTCCAAGCAAAAAATCCATTTTCTCTATGATTAATATGTATATGTCGAAAGTTATGGGTTCTGATCAATAATGTCTTCTACTCCCTAATAAATAGCTCAAAGATGGTTATCAACTGTGCTGGAAACATCTGCAAGATCCAATAACATACAGTTGGTAATAAGGTGCCTTACACCATGATTAGAAGTTCTAATATCTGTTTCTGAGGCTATGTTTTTCCAGCACGAATACCTTGGGAGGCTCACAGTGCAAAATAATCTTGCAGCCTTACTTGCATGAATCACGACATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAAACTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATG</genome_strand>
        <mrna_strand>GCAGCATTATGACGTCCTCGCTTCATTATCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATGCACAGCCTTATCCTCCACAACCTTATCCAGCACAACCAATG..........................................................................................GTTCACGTTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACTTGCATGAATCACGCCATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAATCTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259851" ref_strand="+" ref_description="SGN-E259851 [cLEG-51-L19]">
      <seq>gcagcattatgacgtcctcgcttcattatcattcagatggtagtgagaatgaacagtcagaaaatcaatcagaagcccacagcgagtcttcatcgcctgcagctggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatgttgcaggctcaaacagcttatccatatccagacccatactataggagcatctttgcaccgtatgatgcacagccttatcctccacaaccttatccagcacaaccaatggttcacgttcagctaatgggaattcaacaagcgggtgttcctttgccatcagatgcgatagacgaacctgtttttgttaatgcaaaacagtatcatggcatcttgaggcgtcgacaatctcgcgcgaaagctgagtcagaaaagaaacttctgaaagctaggaagccttacttgcatgaatcacgccatttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="34825" stop="39882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35125" g_stop="35160" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35912" g_stop="36057" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="182" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36058" i_stop="37954" i_length="1897">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37955" g_stop="38062" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="290" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38153" g_stop="38317" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="455" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38318" i_stop="39552" i_length="1235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39553" g_stop="39582" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="485" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E259851" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35125" e_stop="35160"/>
          <exon e_start="35912" e_stop="36057"/>
          <exon e_start="37955" e_stop="38062"/>
          <exon e_start="38153" e_stop="38317"/>
          <exon e_start="39553" e_stop="39582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTGTTTTACAAGCTTGTGTTATTTTATAACTAATTCTCTAGGCATTACTTCGTTTTCAGATTGCTCGATCTGTTTGTCACTCTCTACAACTGCACTTGCCACAATTTGGCTAAAATTTTCTTGTAGGTCTACTGGCCTAGAGTTTCATATAAGGTAAGTCTTTGTCCTATAGGAGGGTTACACTAGCAGAATTCTTTGAACACCATGGATAAGCTGATCTGAATCAACTAGACTCTTTATGCAGCAGCTTGAGCTTGAAGCATATAGTTAGTTACATAGTAAACACTTTTAAAATGCAATCCTTTTAAATTTTGCCATCTTTTCAGCTTTGTGAATGGAATTTAGTGCTAAAATTGTAAATCCATTGTTCCCTGTTTGGACTGCTGCATAAAGATTTTCCTGGATTAACCTGGAGCTGGATGTTTTATCTCCCTCCCTCCATTTGGCACACATAATAACCTGCAATCTTAAGTATTCTTAGTAGGACACTTATTTTTATTGGACACCTTAAACTAGAGGCTTCTGATAGAGATTGCAGATCTTTAAGGTACCAGTTGGGGAATATTTGAAGCCTGTTTCTATGCCTACTAATTTTATATTTAAGCTCTGTGATTGGTTATATCGAGTCTATTTTTCGGATAATAAATCTGCATCAATTTTTCATTAGTTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATGGTATTACATTTTCATAACACTTCTCATTTGGACTTCATCTATGAAATATCCCTATGAATTTGAGAGCTTAGTTGTGTCATTTTCTGTCAGGTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAGGTATTTTGTCGAAAAATATTTTTCTGTATTTTTATTTGTTATACTATGTTGCTTTAGTATCCAATATTGCAATTTACAGGCAACCTTGACAGCTTGTTTGTGGTTCATCTGTTGATTTATCACTTCCTACTGTTAAGTGCTAAATAGCCTCCCAGATGATTCATGTTTGTGATGAACATATTTTAAGTGTCTGTGCATCTCTAGTGCTATTTTAAACACATACAGGGGTCGCTTGGTTCACTTATTAGCTATTTTAGAATTATATATATGAAATATTATGCCATTAATAATATATAGAAATTATTATGCAGTGAATAATGATGCGAGGGTTGTTACACATCAAAAAATAATATAGGGATTCTTATTCAGGGATATCTACTATGAGAGCATCTTTCTCAATATATCCCACATAAAATATTACATAGGTTTCTGCATAATTTAGGCCAATATTAGTAGTGCACACTTTAATTCTGGAAATATAAAGGCAATTTAGTAATGTAGAGTTCTATGTTGCAATCATATTTGTTACACAGAATTTTATATCATGATTGGATTTCCTTATGAGTCCCAATCAAACGACAAAACCATAAAATTTCCTTTACTAATAATATATACTGCAAGTGAAGTGTGGATAGCAGAGCATGAGAGAGACAGTAGAGCAAGTTCTCAAATGTATATTTTTTCTGGACTGTAACTATAATCTCCTCTATTTACAGTTGCTACGCATAAAAATCTAAATAGTTACTAGTATACCATATTAGTTTCACATTACATTGTACAAAGGTTCTGATGCAACAAAAGCTTTTAATTCTAGAACATCTATATTCTATATGATTGATCAATTGCCCATCAAAGTTTATATTGCTCTGATCTTTGGGAAACATAATTTTGATGCATTTTTTAAAAATAAAGTAAAATATTGTTGCTGGAGAACAGAGTGATTCGGTTCCCGATTCGTAATTAAGGATCTTTCTCCAAGCAAAAAATCCATTTTCTCTATGATTAATATGTATATGTCGAAAGTTATGGGTTCTGATCAATAATGTCTTCTACTCCCTAATAAATAGCTCAAAGATGGTTATCAACTGTGCTGGAAACATCTGCAAGATCCAATAACATACAGTTGGTAATAAGGTGCCTTACACCATGATTAGAAGTTCTAATATCTGTTTCTGAGGCTATGTTTTTCCAGCACGAATACCTTGGGAGGCTCACAGTGCAAAATAATCTTGCAGCCTTACTTGCATGAATCACGACATTTGCAT</genome_strand>
        <mrna_strand>GCAGCATTATGACGTCCTCGCTTCATTATCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATGCACAGCCTTATCCTCCACAACCTTATCCAGCACAACCAATG..........................................................................................GTTCACGTTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACTTGCATGAATCACGCCATTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261673" ref_strand="+" ref_description="SGN-E261673 [cLEG-61-E6]">
      <seq>gcagcattatgacgtcctcgcttcattatcattcagatggtagtgagaatgaacagtcagaaaatcaatcagaagcccacagcgagtcttcatcgcctgcagctggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatgttgcaggctcaaacagcttatccatatccagacccatactataggagcatctttgcaccgtatgatgcacagccttatcctccacaaccttatccagcacaaccaatgggtcacgttccgctaatgggaattcaacaagcggggggtcctttgccctcagatgcgatagaagaacctgtttttgtttatggaaaacagtatcatgggatcttgaggcggcgacaatctcgcgcgaaagctgagtcagaaaagaaacttctgaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="34825" stop="38611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35125" g_stop="35160" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751">
            <donor d_prob="0.856" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35912" g_stop="36057" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="182" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36058" i_stop="37954" i_length="1897">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37955" g_stop="38062" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="290" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38153" g_stop="38311" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="449" r_length="159" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E261673" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35125" e_stop="35160"/>
          <exon e_start="35912" e_stop="36057"/>
          <exon e_start="37955" e_stop="38062"/>
          <exon e_start="38153" e_stop="38311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCATTATGACGTCCTCGCTTCATTATCATTCAGGTTATTTTATGGGGGTTTAGTATACTATTTTGTTGGCGGTATAGATTTGTTTCTCAAGTCCGTAACTGTGTTGTGTTGACTGTGAAGTTAGCTTGATTCACATTTCTTTCATTACTAAATGATGTCTGTAACTTGCTCTTCTACACAAATAGTATGATACAAACCCTTCATCTCCTGCTAGTACAATCTGGCACATTTTTTGTTGTGATTCCTTCAGTTTACTGATATGAAGCACATTCATGACATCAAATGTGCTGCTTGAGAATTTTTCCATACTATTGTGGAAGAATTTTTTTTAGCAAGTCTTGTGAGAGATTATTAAGAAGATAAAGGCAGTTGGCAGAATTCTATTCTGCATCCTTCGGCTAATTTGGATGAAAGAACTAGGATAATATTCTAGAATCGCAAAAGATGTAAAAAATATATACAAGATAATTCATTTGTTGTAAAGCGAAGAATCTATAGGTAGTCAAAGTTCAGGAGTACTTGTTTGATGACACTGATTGAACTGATTATCTTTTAATACATTCTTTTGATCCCTTCATTGTGTAGTTTTGACTTATCAAAACGAGTTGGACTTATCATGATAGAAGAAAATAAATTATTGTCTGCAGATGTTTTTGTTTCACATTCAATTTGTTAAGAACCACAGTGAACTCAGACAAAAGCAGTAGGAATTTAAAGTGAATTGGATATGTTGGTTACATGAACAAAAGGTTCTAATGCTTATGTTAATGCAATAAATTTTCAGATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTGTTTTACAAGCTTGTGTTATTTTATAACTAATTCTCTAGGCATTACTTCGTTTTCAGATTGCTCGATCTGTTTGTCACTCTCTACAACTGCACTTGCCACAATTTGGCTAAAATTTTCTTGTAGGTCTACTGGCCTAGAGTTTCATATAAGGTAAGTCTTTGTCCTATAGGAGGGTTACACTAGCAGAATTCTTTGAACACCATGGATAAGCTGATCTGAATCAACTAGACTCTTTATGCAGCAGCTTGAGCTTGAAGCATATAGTTAGTTACATAGTAAACACTTTTAAAATGCAATCCTTTTAAATTTTGCCATCTTTTCAGCTTTGTGAATGGAATTTAGTGCTAAAATTGTAAATCCATTGTTCCCTGTTTGGACTGCTGCATAAAGATTTTCCTGGATTAACCTGGAGCTGGATGTTTTATCTCCCTCCCTCCATTTGGCACACATAATAACCTGCAATCTTAAGTATTCTTAGTAGGACACTTATTTTTATTGGACACCTTAAACTAGAGGCTTCTGATAGAGATTGCAGATCTTTAAGGTACCAGTTGGGGAATATTTGAAGCCTGTTTCTATGCCTACTAATTTTATATTTAAGCTCTGTGATTGGTTATATCGAGTCTATTTTTCGGATAATAAATCTGCATCAATTTTTCATTAGTTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATGGTATTACATTTTCATAACACTTCTCATTTGGACTTCATCTATGAAATATCCCTATGAATTTGAGAGCTTAGTTGTGTCATTTTCTGTCAGGTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCT</genome_strand>
        <mrna_strand>GCAGCATTATGACGTCCTCGCTTCATTATCATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATGCACAGCCTTATCCTCCACAACCTTATCCAGCACAACCAATG..........................................................................................GGTCACGTTCCGCTAATGGGAATTCAACAAGCGGGGGGTCCTTTGCCCTCAGATGCGATAGAAGAACCTGTTTTTGTTTATGGAAAACAGTATCATGGGATCTTGAGGCGGCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320942" ref_strand="+" ref_description="SGN-E320942 [cTOB-13-E8]">
      <seq>aatgaacagtcagaaaatcaatcagaagcccacagcgagtcttcatcgcctgcagctggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatggtatatttgaagcaccaattaacttctaatgaccgatttctgaaaatcactattaattcctgaattgatatcttctgcttgataattattcttgctgatagatgcaacccccttcttgttcttccgatcagatgttatcatagaactgctgtcgtgaataaattaggggtattgtcagaagtcaaataggttacaaatatctgaagaattgattgattgtaataggtatgtagatatattgacgatggttctgtgaatattatcattttgcacttgttaataggcttctttattttgggagatgaagtgcacatgttcatatttggctataattagaatgtgatatcgttcttctcttcattagcagagacaccactttgacatttgtaacatccaacatgaaaccgcatatatttcttgcccaaatagttggttgtgcaaaagcctgaaagccaagttgatcataaatatcttaatgtggggcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="35623" stop="36846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35923" g_stop="36546" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E320942" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35923" e_stop="36546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAAT</genome_strand>
        <mrna_strand>AATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAATTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCCCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701599" ref_strand="+" ref_description="SGN-E701599 [FA16BG01]">
      <seq>ggcagaggggaatgtctgtccctggcactgtaacaacaaatatgcactatgttatgcccaatcaacttgggaatggaaatcctatgttgcaggctcaaacagcttatccatatccagacccatactataggagcatctttgcaccgtatgatccacaaccttatcctccacaaccttatccagcacaaccaatggttcacgttcagctaatgggaattcaacaagcgggtgttcctttgccatcagatgcgatagacgaacctgtttttgttaatgcaaaacagtatcatggcatcttgaggcgtcgacaatctcgcgcgaaagctgagtcagaaaagaaacttctgaaagctaggaagccttacttgcatgaatcacgacatttgcatgcattgaaaagagctagaggatgtggaggtcgtttcctgacagcaaaggaaactgataatcagcagaaacaggatgaaactggtgataaatctcaagtcaacattaatctcgagtctggaaaagacaaggtcgcttcttcagagaatgcctcttgatctatgcaatatcaaggactttgtggaccatagtatgttgttactgtttgtagaaacagcagtgcttttgttaaaatagaattgtggtagctgggcaaaatcagggtaattgtggtgttctgtatgtttatctgagtgtagatagatcggaataggcctactcgtttgagagctacaaagtggccgctgggcgtatgttctctaaataccatctctctgagcttgtttgtagacattctttcttgtcctttcgaaattgccttgtgattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="35680" stop="40309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35970" g_stop="36057" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36058" i_stop="37954" i_length="1897">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37955" g_stop="38062" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="194" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38153" g_stop="38317" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="359" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38318" i_stop="39552" i_length="1235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39553" g_stop="40009" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="816" r_length="457" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E701599" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35970" e_stop="36057"/>
          <exon e_start="37955" e_stop="38062"/>
          <exon e_start="38153" e_stop="38317"/>
          <exon e_start="39553" e_stop="40009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTGTTTTACAAGCTTGTGTTATTTTATAACTAATTCTCTAGGCATTACTTCGTTTTCAGATTGCTCGATCTGTTTGTCACTCTCTACAACTGCACTTGCCACAATTTGGCTAAAATTTTCTTGTAGGTCTACTGGCCTAGAGTTTCATATAAGGTAAGTCTTTGTCCTATAGGAGGGTTACACTAGCAGAATTCTTTGAACACCATGGATAAGCTGATCTGAATCAACTAGACTCTTTATGCAGCAGCTTGAGCTTGAAGCATATAGTTAGTTACATAGTAAACACTTTTAAAATGCAATCCTTTTAAATTTTGCCATCTTTTCAGCTTTGTGAATGGAATTTAGTGCTAAAATTGTAAATCCATTGTTCCCTGTTTGGACTGCTGCATAAAGATTTTCCTGGATTAACCTGGAGCTGGATGTTTTATCTCCCTCCCTCCATTTGGCACACATAATAACCTGCAATCTTAAGTATTCTTAGTAGGACACTTATTTTTATTGGACACCTTAAACTAGAGGCTTCTGATAGAGATTGCAGATCTTTAAGGTACCAGTTGGGGAATATTTGAAGCCTGTTTCTATGCCTACTAATTTTATATTTAAGCTCTGTGATTGGTTATATCGAGTCTATTTTTCGGATAATAAATCTGCATCAATTTTTCATTAGTTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATGGTATTACATTTTCATAACACTTCTCATTTGGACTTCATCTATGAAATATCCCTATGAATTTGAGAGCTTAGTTGTGTCATTTTCTGTCAGGTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAGGTATTTTGTCGAAAAATATTTTTCTGTATTTTTATTTGTTATACTATGTTGCTTTAGTATCCAATATTGCAATTTACAGGCAACCTTGACAGCTTGTTTGTGGTTCATCTGTTGATTTATCACTTCCTACTGTTAAGTGCTAAATAGCCTCCCAGATGATTCATGTTTGTGATGAACATATTTTAAGTGTCTGTGCATCTCTAGTGCTATTTTAAACACATACAGGGGTCGCTTGGTTCACTTATTAGCTATTTTAGAATTATATATATGAAATATTATGCCATTAATAATATATAGAAATTATTATGCAGTGAATAATGATGCGAGGGTTGTTACACATCAAAAAATAATATAGGGATTCTTATTCAGGGATATCTACTATGAGAGCATCTTTCTCAATATATCCCACATAAAATATTACATAGGTTTCTGCATAATTTAGGCCAATATTAGTAGTGCACACTTTAATTCTGGAAATATAAAGGCAATTTAGTAATGTAGAGTTCTATGTTGCAATCATATTTGTTACACAGAATTTTATATCATGATTGGATTTCCTTATGAGTCCCAATCAAACGACAAAACCATAAAATTTCCTTTACTAATAATATATACTGCAAGTGAAGTGTGGATAGCAGAGCATGAGAGAGACAGTAGAGCAAGTTCTCAAATGTATATTTTTTCTGGACTGTAACTATAATCTCCTCTATTTACAGTTGCTACGCATAAAAATCTAAATAGTTACTAGTATACCATATTAGTTTCACATTACATTGTACAAAGGTTCTGATGCAACAAAAGCTTTTAATTCTAGAACATCTATATTCTATATGATTGATCAATTGCCCATCAAAGTTTATATTGCTCTGATCTTTGGGAAACATAATTTTGATGCATTTTTTAAAAATAAAGTAAAATATTGTTGCTGGAGAACAGAGTGATTCGGTTCCCGATTCGTAATTAAGGATCTTTCTCCAAGCAAAAAATCCATTTTCTCTATGATTAATATGTATATGTCGAAAGTTATGGGTTCTGATCAATAATGTCTTCTACTCCCTAATAAATAGCTCAAAGATGGTTATCAACTGTGCTGGAAACATCTGCAAGATCCAATAACATACAGTTGGTAATAAGGTGCCTTACACCATGATTAGAAGTTCTAATATCTGTTTCTGAGGCTATGTTTTTCCAGCACGAATACCTTGGGAGGCTCACAGTGCAAAATAATCTTGCAGCCTTACTTGCATGAATCACGACATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAAACTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTAAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCC</genome_strand>
        <mrna_strand>GGCAG-AG-GGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATG..........................................................................................GTTCACGTTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACTTGCATGAATCACGACATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAAACTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTAAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGAAATTGCCTTGTGATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357996" ref_strand="+" ref_description="SGN-E357996 [cLHT-32-J7]">
      <seq>ttggttgtgcaaaagcctgaaagccaagttgatcataaatatcttaatgtggggcataatggagctatgattgtgcttatggattcttgtatctagaggtaaattcatatgaagcaaaatatattattttagatttatgaatgattagttggatgttccacgcgaacctataaattgaagaaagttgcttattagatagcattacagaatacattggggtcgttcagactatttgagaaagcaataggtgagtatgaacctaagaaaaggatattaatgcatcaagtttctttactattccaaatgtattcagtagtaggatggaaatatttctacttatagattgtcatgttgtatacctggcggatataacaagggttgttagtctctggtgaggaaaatttgtatatttcttgaagatagggaatgacctttttgtgcttattgcttttgattagttgatgactttctcttgataggacttagaagttagaaccactaataagaacattcagttgtgagaagaaacacatgtaccctttctagtgtttgcttatacaaagagcataaagtttttgaatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="36187" stop="37372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36487" g_stop="37072" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E357996" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36487" e_stop="37072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCAC-CGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGAT</genome_strand>
        <mrna_strand>TTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTCCACGCGAACCTATAAATTGAAGAAAGTTGCTTATTAGATAGCATTACAGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAGTATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTATTCAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTATACCTGGCGGATATAACAAGGGTTGTTAGTCTCTGGTGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTTGATAGGACTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTTTGCTTATACAAAGAGCATAAAGTTTTTGAATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357997" ref_strand="+" ref_description="SGN-E357997 [cLHT-32-J9]">
      <seq>ttggttgtgcaaaagcctgaaagccaagttgatcataaatatcttaatgtggggcataatggagctatgattgtgcttatggattcttgtatctagaggtaaattcatatgaagcaaaatatattattttagatttatgaatgattagttggatgttccacgccaacctataaattgaagaaaggtgcttattagatagcattacagaatacattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="36187" stop="37003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36487" g_stop="36703" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E357997" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36487" e_stop="36703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCAC-CGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGG</genome_strand>
        <mrna_strand>TTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTCCACGCCAACCTATAAATTGAAGAAAGGTGCTTATTAGATAGCATTACAGAATACATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327172" ref_strand="+" ref_description="SGN-E327172 [cTOC-18-N7]">
      <seq>attggggtcgttcagactatttgagaaagcaataggtgaatatgaacctaagaaaaggatattaatgcatcaagtttctttactattccaaatgtttttagtagtaggatggaaatatttctacttatagattgtcatgttgtacacctggcggatataataagggttgttagtctctgatgaggaaaatttgtatatttcttgaagatagggaatgacctttttgtgcttattgcttttgattagttgatgactttctctagataggagttagaagttagaaccactaataagaacattcagttgtgagaagaaacacatgtaccctttctagtgtgtgcttatacaaagagcataaagtttttgaatggtgatgttgtaacattaagaatagatatttcatgacttctcgatatttacaatccatcattgttgggtttgtcaatcataactgaagagaccttgggacggagagtgatttccattttggtcttgttttctggtattttgattggtctttaaatcaggtatgtttgggttagacacaaacacttncattataatctctcatttctgttttaggcaacatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="36398" stop="37590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36698" g_stop="37290" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E327172" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36698" e_stop="37290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTG</genome_strand>
        <mrna_strand>ATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGTTTGGGTTAGACACAAACACTTNCATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543140" ref_strand="+" ref_description="SGN-E543140 [TUS-64-M21](-)">
      <seq>caggctcaaacagcttatccatatccagacccatactataggagcatctttgcaccgtatgatgcacagccttatcctccacaaccttatccagcacaaccaatggttcacgttcagctaatgggaattcaacaagcgggtgttcctttgccatcagatgcgatagacgaacctgtttttgttaatgcaaaacagtatcatggcatcttgaggcgtcgacaatctcgcgcgaaagctgagtcagaaaagaaacttctgaaagctaggaagccttacttgcatgaatcacgccatttgcatgcattgaaaagagctagaggatgtggaggtcgtttcctgacagcaaaggaaactgataatcagcagaaacaggatgaatctggtgataaatctcaagtcaacattaatctcgagtctggaaaagacaaggtcgcttcttcagagaatgcctcttgatctatgcaatatcaaggactttgtggaccatagtatgttgttactgtttgtagaaacagcagtgcttttgtttaaatagaattgtggtagctgggcaaaatcagggtaattgtggtgttctgtatgtttatctgagtgtagatagatcggaataggcctactcgtttgagagctacaaagtggccgctgggcgtatgttctctaaataccatctctctgagcttgtttgtagacattctttcttgtcctttcgtaattgccttgtgattccttcaaaatgttgttctggtaagtgtatggaatatcgagtcagaaatttgagtaataacgtttggcactacgttttgttagttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="37658" stop="40402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37958" g_stop="38062" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38153" g_stop="38317" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="270" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38318" i_stop="39552" i_length="1235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39553" g_stop="40100" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="818" r_length="548" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E543140" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37958" e_stop="38062"/>
          <exon e_start="38153" e_stop="38317"/>
          <exon e_start="39553" e_stop="40100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATGGTATTACATTTTCATAACACTTCTCATTTGGACTTCATCTATGAAATATCCCTATGAATTTGAGAGCTTAGTTGTGTCATTTTCTGTCAGGTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAGGTATTTTGTCGAAAAATATTTTTCTGTATTTTTATTTGTTATACTATGTTGCTTTAGTATCCAATATTGCAATTTACAGGCAACCTTGACAGCTTGTTTGTGGTTCATCTGTTGATTTATCACTTCCTACTGTTAAGTGCTAAATAGCCTCCCAGATGATTCATGTTTGTGATGAACATATTTTAAGTGTCTGTGCATCTCTAGTGCTATTTTAAACACATACAGGGGTCGCTTGGTTCACTTATTAGCTATTTTAGAATTATATATATGAAATATTATGCCATTAATAATATATAGAAATTATTATGCAGTGAATAATGATGCGAGGGTTGTTACACATCAAAAAATAATATAGGGATTCTTATTCAGGGATATCTACTATGAGAGCATCTTTCTCAATATATCCCACATAAAATATTACATAGGTTTCTGCATAATTTAGGCCAATATTAGTAGTGCACACTTTAATTCTGGAAATATAAAGGCAATTTAGTAATGTAGAGTTCTATGTTGCAATCATATTTGTTACACAGAATTTTATATCATGATTGGATTTCCTTATGAGTCCCAATCAAACGACAAAACCATAAAATTTCCTTTACTAATAATATATACTGCAAGTGAAGTGTGGATAGCAGAGCATGAGAGAGACAGTAGAGCAAGTTCTCAAATGTATATTTTTTCTGGACTGTAACTATAATCTCCTCTATTTACAGTTGCTACGCATAAAAATCTAAATAGTTACTAGTATACCATATTAGTTTCACATTACATTGTACAAAGGTTCTGATGCAACAAAAGCTTTTAATTCTAGAACATCTATATTCTATATGATTGATCAATTGCCCATCAAAGTTTATATTGCTCTGATCTTTGGGAAACATAATTTTGATGCATTTTTTAAAAATAAAGTAAAATATTGTTGCTGGAGAACAGAGTGATTCGGTTCCCGATTCGTAATTAAGGATCTTTCTCCAAGCAAAAAATCCATTTTCTCTATGATTAATATGTATATGTCGAAAGTTATGGGTTCTGATCAATAATGTCTTCTACTCCCTAATAAATAGCTCAAAGATGGTTATCAACTGTGCTGGAAACATCTGCAAGATCCAATAACATACAGTTGGTAATAAGGTGCCTTACACCATGATTAGAAGTTCTAATATCTGTTTCTGAGGCTATGTTTTTCCAGCACGAATACCTTGGGAGGCTCACAGTGCAAAATAATCTTGCAGCCTTACTTGCATGAATCACGACATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAAACTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTAAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCCTTCAAAATGTTGTTCTAGTAAGTGTATGGAATATCGAGTCAGAAATTTGAGTAATAACGTTTGGCACTACGTTTTGTTAGTTTAAGAAGAT</genome_strand>
        <mrna_strand>CAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATGCACAGCCTTATCCTCCACAACCTTATCCAGCACAACCAATG..........................................................................................GTTCACGTTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACTTGCATGAATCACGCCATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAATCTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTTAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCCTTCAAAATGTTGTTCTGGTAAGTGTATGGAATATCGAGTCAGAAATTTGAGTAATAACGTTTGGCACTACGTTTTGTTAGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E609812" ref_strand="+" ref_description="SGN-E609812 [46304]">
      <seq>gaaactgataatcagcagaaacaggatgaatctggtgtataaatcacacgtcaacattaatctcgagtctggaaaagacaaggttgcttcttcagagaatgcctcttgatttatgcaatatcaaggactttgttgaccatagtatgttgttgctgtttgttgaaacagcaatgcttttgtcaaagtagaactgtggtagctggccaaaatcagggtaattgtggtgttctgtatgtttatctcagtgtagatagatcagaataggctacttgtttgagagctacaaagtggtcagtgggtgtatattctctaaatactatctttctgagcttgtttgtggacgttctttcttgtccttttgtaattaccttgtgattccttcaatatgttgttctggtaagtgtacgaaatatcaagtcagaaatttgagttataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="39331" stop="40366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39631" g_stop="40066" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E609812" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39631" e_stop="40066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTGATAATCAGCAGAAACAGGATGAAACTGGTG-ATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTAAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCCTTCAAAATGTTGTTCTAGTAAGTGTATGGAATATCGAGTCAGAAATTTGAGTAATAA</genome_strand>
        <mrna_strand>GAAACTGATAATCAGCAGAAACAGGATGAATCTGGTGTATAAATCACACGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTTGCTTCTTCAGAGAATGCCTCTTGATTTATGCAATATCAAGGACTTTGTTGACCATAGTATGTTGTTGCTGTTTGTTGAAACAGCAATGCTTTTGTCAAAGTAGAACTGTGGTAGCTGGCCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTCAGTGTAGATAGATCAGAATAGG-CTACTTGTTTGAGAGCTACAAAGTGGTCAGTGGGTGTATATTCTCTAAATACTATCTTTCTGAGCTTGTTTGTGGACGTTCTTTCTTGTCCTTTTGTAATTACCTTGTGATTCCTTCAATATGTTGTTCTGGTAAGTGTACGAAATATCAAGTCAGAAATTTGAGTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309651" ref_strand="-" ref_description="SGN-E309651 [cLEY-26-J2]">
      <seq>tttttttttatttttttttttttttttttttggaatcacaaggcaattacgaaaggacaagaaagaatgtctacaaacaagctcagagagatggtatttagagaacatacgcccagcggccactttgtagctctcaaacgagtaggcctattccgatctatctacactcagataaacatacagaacaccacaattaccctgattttgcccagctaccacaattctatttaaacaaaagcactgctgtttctacaaacagtaacaacatactatggtccacaaagtccttgatattgcatagatcaagaggcattctctgaagaagcgaccttgtcttttccagactcgagattaatgttgacttgagatttatcaccagattcatcctgtttctgctgattatcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="122301" stop="39332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40888" g_stop="40857" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.594"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40856" i_stop="40009" i_length="848">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.479" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40008" g_stop="39632" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="409" r_length="377" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E309651" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309651" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40888" e_stop="40857"/>
          <exon e_start="40008" e_stop="39632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGGTTTAGTTGGTGGATAGGTTCAATTTTATACTAAGATAAGTTTATGACCACTCAATTTATTCTACAATATTTTTTTACAAATTTCACGGATAACTTTCATAAACTGCATGAACGTAGTTTGTTCTGAATCTGTAGATAATAATAAGCTTGTGTTTCTCCATAAAAAACCTTAAGAAAGGTTGTGTATCAACCACTCCATATTTTACCAACAATCTGTTATTTTTGATAAGTTATACAACTGAAGTGCTCTGTTTTGAAATTTACTCCGAGCAATTAATGGAGATTCTGATTAGTAACACAATAGAGAAACTTCTCAACCAACACTATAATTTCTCTCTTGACAGTTCTAACTTTTTTTACAAGATATGGAGGAATATCTAGAAGTAAATACAACAGGATATAAATACAAGACCTGCTGCTTTGCAAGACACAAGAATCAATAATCGCAGCGGATATGGTTATAGATAACCAAGATATTGACACAGAATGCATTGACCTTGGAAAATTAGAATTCATCAACCAACAGTGCTGCACGCTTATCTTCTTAAACTAACAAAACGTAGTGCCAAACGTTATTACTCAAATTTCTGACTCGATATTCCATACACTTACTAGAACAACATTTTGAAGGAATCACAAGGCAATTACGAAAGGACAAGAAAGAATGTCTACAAACAAGCTCAGAGAGATGGTATTTAGAGAACATACGCCCAGCGGCCACTTTGTAGCTCTCAAACGAGTAGGCCTATTCCGATCTATCTACACTCAGATAAACATACAGAACACCACAATTACCCTGATTTTGCCCAGCTACCACAATTCTATTTTAACAAAAGCACTGCTGTTTCTACAAACAGTAACAACATACTATGGTCCACAAAGTCCTTGATATTGCATAGATCAAGAGGCATTCTCTGAAGAAGCGACCTTGTCTTTTCCAGACTCGAGATTAATGTTGACTTGAGATTTATCACCAGTTTCATCCTGTTTCTGCTGATTATCAGTTT</genome_strand>
        <mrna_strand>TTTTTTTTTATTTTTTTTTTTTTTTTTTTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACAAGGCAATTACGAAAGGACAAGAAAGAATGTCTACAAACAAGCTCAGAGAGATGGTATTTAGAGAACATACGCCCAGCGGCCACTTTGTAGCTCTCAAACGAGTAGGCCTATTCCGATCTATCTACACTCAGATAAACATACAGAACACCACAATTACCCTGATTTTGCCCAGCTACCACAATTCTATTTAAACAAAAGCACTGCTGTTTCTACAAACAGTAACAACATACTATGGTCCACAAAGTCCTTGATATTGCATAGATCAAGAGGCATTCTCTGAAGAAGCGACCTTGTCTTTTCCAGACTCGAGATTAATGTTGACTTGAGATTTATCACCAGATTCATCCTGTTTCTGCTGATTATCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229245" ref_strand="+" ref_description="SGN-E229245 [cLEL-29-G3](-)">
      <seq>gatgaatctggtgataaatctcaagtcaacattaatctcgagtctggaaaagacaaggtcgcttcttcaaagaatgcctcttgatctatgcaatatcaaggactttgtggaccatagtatgttgttactgtttgtagaaacagcagtgcttttgtttaaatagaattgtggtagctgggcaaaatcagggtaattgtggtgttctgtatgtttatctgagtgtagatagatcggaataggcctactcgtttgagagctacaaagtggccgctgggggtatgttctctaaataccatctctctgagcttgtttgtagacattctttcttgtcctttcgtaattgccttgtgattccttcaaaatgttgttctggtaagtgtatggaatatcgagtcagaaatttgagtaataacgtttggcccttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="39355" stop="122301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39655" g_stop="40102" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E229245" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39655" e_stop="40102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAACTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTAAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCCTTCAAAATGTTGTTCTAGTAAGTGTATGGAATATCGAGTCAGAAATTTGAGTAATAACGTTTGGCACTACGTTTTGTTAGTTTAAGAAGATAA</genome_strand>
        <mrna_strand>GATGAATCTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAAAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTTAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGGGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCCTTCAAAATGTTGTTCTGGTAAGTGTATGGAATATCGAGTCAGAAATTTGAGTAATAACGTTTGGCCCTTAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228573" ref_strand="+" ref_description="SGN-E228573 [cLEL-29-G3](-)">
      <seq>taatctcgagtctggaaaagacaaggtcgcttcttcagagaatgcctcttgatctatgcaatatcaaggcctttgtggaccatagtatgttgttactgtttgtagaaacagcagtgcttttgtttaaatagaattgtggtagctgggcaaaatcagggtaattgtggtgttctgtatgtttatctgagtgtagatagatcggaataggcctactcgtttgagagctacaaagtggccgctgggcgtatgttctctaaataccatctctctgagcttgtttgtagacattctttcttgtcctttcgtaattgccttgtgattccttcaaaatgttgttctggtaagtgtatggaatatcgagtcagaaatttgagtaataacgtttggccctataagtaaaaaaaaaaaaaaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="39387" stop="122301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39687" g_stop="40104" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E228573" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39687" e_stop="40104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTAAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCCTTCAAAATGTTGTTCTAGTAAGTGTATGGAATATCGAGTCAGAAATTTGAGTAATAACGTTTGGCACTACGTTTTGTTAGTTTAAGAAGATAAGC</genome_strand>
        <mrna_strand>TAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGCCTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTTAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCCTTCAAAATGTTGTTCTGGTAAGTGTATGGAATATCGAGTCAGAAATTTGAGTAATAACGTTTGGCCCTATAAGTAAAAAAAAAAAAAAAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552905" ref_strand="+" ref_description="SGN-E552905 [cTSB-5-G22]">
      <seq>tccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaattatgcaaccttttgctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatccgggggggggggcggggccccctttccccctaagggggggtgaattaaaatttcgggggggggtttttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43017" stop="17950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42717" g_stop="42676" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="177" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41020" g_stop="40761" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="437" r_length="260" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40760" i_stop="40480" i_length="281">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40479" g_stop="40461" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="456" r_length="19" r_score="0.632"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40460" i_stop="40258" i_length="203">
            <donor d_prob="0.877" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40257" g_stop="40187" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="527" r_length="71" r_score="0.423"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40186" i_stop="40009" i_length="178">
            <donor d_prob="0.000" d_score="0.36"/>
            <acceptor a_prob="0.479" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40008" g_stop="39999" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="537" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39998" i_stop="39740" i_length="259">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.472" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39739" g_stop="39718" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="559" r_length="22" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E552905" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42717" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40761"/>
          <exon e_start="40479" e_stop="40461"/>
          <exon e_start="40257" e_stop="40187"/>
          <exon e_start="40008" e_stop="39999"/>
          <exon e_start="39739" e_stop="39718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGGTTTAGTTGGTGGATAGGTTCAATTTTATACTAAGATAAGTTTATGACCACTCAATTTATTCTACAATATTTTTTTACAAATTTCACGGATAACTTTCATAAACTGCATGAACGTAGTTTGTTCTGAATCTGTAGATAATAATAAGCTTGTGTTTCTCCATAAAAAACCTTAAGAAAGGTTGTGTATCAACCACTCCATATTTTACCAACAATCTGTTATTTTTGATAAGTTATACAACTGAAGTGCTCTGTTTTGAAATTTACTCCGAGCAATTAATGGAGATTCTGATTAGTAACACAATAGAGAAACTTCTCAACCAACACTATAATTTCTCTCTTGACAGTTCTAACTTTTTTTACAAGATATGGAGGAATATCTAGAAGTAAATACAACAGGATATAAATACAAGACCTGCTGCTTTGCAAGACACAAGAATCAATAATCGCAGCGGATATGGTTATAGATAACCAAGATATTGACACAGAATGCATTGACCTTGGAAAATTAGAATTCATCAACCAACAGTGCTGCACGCTTATCTTCTTAAACTAACAAAACGTAGTGCCAAACGTTATTACTCAAATTTCTGACTCGATATTCCATACACTTACTAGAACAACATTTTGAAGGAATCACAAGGCAATTACGAAAGGACAAGAAAGAATGTCTACAAACAAGCTCAGAGAGATGGTATTTAGAGAACATACGCCCAGCGGCCACTTTGTAGCTCTCAAACGAGTAGGCCTATTCCGATCTATCTACACTCAGATAAACATACAGAACACCACAATTACCCTGATTTTGCCCAGCTACCACAATTCTATTTTAACAAAAGCACTGCTGTTTCTACAAACAGTAACAACATACTATGGTCCACAAAGTCCTTGATATTGCATAGATCAAGAGGCATTCTCTGAAGA</genome_strand>
        <mrna_strand>TCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAAAA.........................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA...........................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAATCCGGGGGGGGGGGCGGGGCCCCCTTTCCCCCTAAGGGGGGGT..................................................................................................................................................................................GAATTAAAAT...................................................................................................................................................................................................................................................................TTCGGGGGGGGGTTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717562" ref_strand="+" ref_description="SGN-E717562 [FC02AD07]">
      <seq>aatcggccgaattgagcgcctttctcttcattccagttccttcttctgttgccctagcctccgccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacccaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcaaatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43228" stop="17958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42921" g_stop="42832" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="106" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="181" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="316" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40801" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="536" r_length="220" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40800" i_stop="40009" i_length="792">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.479" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40008" g_stop="39954" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="591" r_length="55" r_score="0.491"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E717562" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42921" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40801"/>
          <exon e_start="40008" e_stop="39954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTTTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGGTTTAGTTGGTGGATAGGTTCAATTTTATACTAAGATAAGTTTATGACCACTCAATTTATTCTACAATATTTTTTTACAAATTTCACGGATAACTTTCATAAACTGCATGAACGTAGTTTGTTCTGAATCTGTAGATAATAATAAGCTTGTGTTTCTCCATAAAAAACCTTAAGAAAGGTTGTGTATCAACCACTCCATATTTTACCAACAATCTGTTATTTTTGATAAGTTATACAACTGAAGTGCTCTGTTTTGAAATTTACTCCGAGCAATTAATGGAGATTCTGATTAGTAACACAATAGAGAAACTTCTCAACCAACACTATAATTTCTCTCTTGACAGTTCTAACTTTTTTTACAAGATATGGAGGAATATCTAGAAGTAAATACAACAGGATATAAATACAAGACCTGCTGCTTTGCAAGACACAAGAATCAATAATCGCAGCGGATATGGTTATAGATAACCAAGATATTGACACAGAATGCATTGACCTTGGAAAATTAGAATTCATCAACCAACAGTGCTGCACGCTTATCTTCTTAAACTAACAAAACGTAGTGCCAAACGTTATTACTCAAATTTCTGACTCGATATTCCATACACTTACTAGAACAACATTTTGAAGGAATCACAAGGCAATTACGAAAGGACAAGAAAGAATGTCTACAAACAAGCTCAGA</genome_strand>
        <mrna_strand>CGCCTTTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAAATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466879" ref_strand="+" ref_description="SGN-E466879 [cPRO-26-I24]">
      <seq>ccgccactccccacccccttacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaattcttgggcttctgaatttatgcatccttttactgagatccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43177" stop="17958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42877" g_stop="42832" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="121" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="256" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40762" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="514" r_length="258" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40761" i_stop="40243" i_length="519">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.562" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40242" g_stop="40226" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="531" r_length="17" r_score="0.529"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E466879" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42877" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40762"/>
          <exon e_start="40242" e_stop="40226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGGTTTAGTTGGTGGATAGGTTCAATTTTATACTAAGATAAGTTTATGACCACTCAATTTATTCTACAATATTTTTTTACAAATTTCACGGATAACTTTCATAAACTGCATGAACGTAGTTTGTTCTGAATCTGTAGATAATAATAAGCTTGTGTTTCTCCATAAAAAACCTTAAGAAAGGTTGTGTATCAACCACTCCATATTTTACCAACAATCTGTTATTTTTGATAAGTTATACAACTGAAGTGCTCTGTTTTGAAATTTACTCCGAGCAATTAATGGAGATTCTGATTAGTAACACAATAGAGAAACTTCTCAACCAACACTATAATTTCTCTCTTGACAGTTCTAACTTTTTTTACAAGATATGGAGGAATATCTAGAAGTAAATACAACAGGATATAAATACAAGACC</genome_strand>
        <mrna_strand>CCGCCACTCCCCACCCCCTTACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTCTTGGGCTTCTG-AATTTATGCATCCTTTTACTGAGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439673" ref_strand="+" ref_description="SGN-E439673 [cSTA-13-G21]">
      <seq>cttcattccagttccttcctctgttgccctagcctccgccactccccaccccctaacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttcagtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43212" stop="17958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42912" g_stop="42832" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="156" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="291" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="508" r_length="217" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40803" i_stop="40243" i_length="561">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.562" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40242" g_stop="40228" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="523" r_length="15" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E439673" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42912" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
          <exon e_start="40242" e_stop="40228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGGTTTAGTTGGTGGATAGGTTCAATTTTATACTAAGATAAGTTTATGACCACTCAATTTATTCTACAATATTTTTTTACAAATTTCACGGATAACTTTCATAAACTGCATGAACGTAGTTTGTTCTGAATCTGTAGATAATAATAAGCTTGTGTTTCTCCATAAAAAACCTTAAGAAAGGTTGTGTATCAACCACTCCATATTTTACCAACAATCTGTTATTTTTGATAAGTTATACAACTGAAGTGCTCTGTTTTGAAATTTACTCCGAGCAATTAATGGAGATTCTGATTAGTAACACAATAGAGAAACTTCTCAACCAACACTATAATTTCTCTCTTGACAGTTCTAACTTTTTTTACAAGATATGGAGGAATATCTAGAAGTAAATACAACAGGATATAAATACAAGA</genome_strand>
        <mrna_strand>CTTCATTCCAGTTCCTTCCTCTGTTGCCCTAGCCTCCGCCACTCCCCACCCCCTAACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCAGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578801" ref_strand="+" ref_description="SGN-E578801 [85922]">
      <seq>ctagcctccgccactccccacccccttacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaatgtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaattcttgggcttctgaatttatgcatccttttactgaaaaaaaaaaaaaaaagaaaaaataaagacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43184" stop="17943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42884" g_stop="42832" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="128" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="264" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40763" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="521" r_length="257" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40762" i_stop="40258" i_length="505">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40257" g_stop="40228" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="551" r_length="30" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E578801" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42884" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40763"/>
          <exon e_start="40257" e_stop="40228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAA-GTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGGTTTAGTTGGTGGATAGGTTCAATTTTATACTAAGATAAGTTTATGACCACTCAATTTATTCTACAATATTTTTTTACAAATTTCACGGATAACTTTCATAAACTGCATGAACGTAGTTTGTTCTGAATCTGTAGATAATAATAAGCTTGTGTTTCTCCATAAAAAACCTTAAGAAAGGTTGTGTATCAACCACTCCATATTTTACCAACAATCTGTTATTTTTGATAAGTTATACAACTGAAGTGCTCTGTTTTGAAATTTACTCCGAGCAATTAATGGAGATTCTGATTAGTAACACAATAGAGAAACTTCTCAACCAACACTATAATTTCTCTCTTGACAGTTCTAACTTTTTTTACAAGATATGGAGGAATATCTAGAAGTAAATACAACAGGATATAAATACAAGA</genome_strand>
        <mrna_strand>CTAGCCTCCGCCACTCCCCACCCCCTTACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAATGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTCTTGGGCTTCTG-AATTTATGCATCCTTTTACTGAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAGAAAAAATAAAGACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587002" ref_strand="-" ref_description="SGN-E587002 [75839]">
      <seq>cgccactccccaccccctacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttcagtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43176" stop="17958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42876" g_stop="42832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.91"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="119" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="254" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40801" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="474" r_length="220" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40800" i_stop="40243" i_length="558">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.562" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40242" g_stop="40228" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="489" r_length="15" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E587002" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587002" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42876" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40801"/>
          <exon e_start="40242" e_stop="40228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGGTTTAGTTGGTGGATAGGTTCAATTTTATACTAAGATAAGTTTATGACCACTCAATTTATTCTACAATATTTTTTTACAAATTTCACGGATAACTTTCATAAACTGCATGAACGTAGTTTGTTCTGAATCTGTAGATAATAATAAGCTTGTGTTTCTCCATAAAAAACCTTAAGAAAGGTTGTGTATCAACCACTCCATATTTTACCAACAATCTGTTATTTTTGATAAGTTATACAACTGAAGTGCTCTGTTTTGAAATTTACTCCGAGCAATTAATGGAGATTCTGATTAGTAACACAATAGAGAAACTTCTCAACCAACACTATAATTTCTCTCTTGACAGTTCTAACTTTTTTTACAAGATATGGAGGAATATCTAGAAGTAAATACAACAGGATATAAATACAAGA</genome_strand>
        <mrna_strand>CGCCACTCCCCA-CCCCCTACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCAGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203371" ref_strand="+" ref_description="SGN-E203371 [cLEB-3-P23](-)">
      <seq>ggcacgagaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43041" stop="17958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42746" g_stop="42676" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="205" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="422" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40803" i_stop="40268" i_length="536">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.55"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40267" g_stop="40228" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="462" r_length="40" r_score="0.550"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E203371" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42746" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
          <exon e_start="40267" e_stop="40228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGGTTTAGTTGGTGGATAGGTTCAATTTTATACTAAGATAAGTTTATGACCACTCAATTTATTCTACAATATTTTTTTACAAATTTCACGGATAACTTTCATAAACTGCATGAACGTAGTTTGTTCTGAATCTGTAGATAATAATAAGCTTGTGTTTCTCCATAAAAAACCTTAAGAAAGGTTGTGTATCAACCACTCCATATTTTACCAACAATCTGTTATTTTTGATAAGTTATACAACTGAAGTGCTCTGTTTTGAAATTTACTCCGAGCAATTAATGGAGATTCTGATTAGTAACACAATAGAGAAACTTCTCAACCAACACTATAATTTCTCTCTTGACAGTTCTAACTTTTTTTACAAGATATGGAGGAATATCTAGAAGTAAATACAACAGGATATAAATACAAGA</genome_strand>
        <mrna_strand>GGCACGA-GAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311154" ref_strand="+" ref_description="SGN-E311154 [cLEZ-16-F2]">
      <seq>ttcattccagttccttcttctgttgccctagcctccgccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43211" stop="17958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42911" g_stop="42832" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="155" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="290" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40801" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="510" r_length="220" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40800" i_stop="40268" i_length="533">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40267" g_stop="40230" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="548" r_length="38" r_score="0.553"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E311154" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42911" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40801"/>
          <exon e_start="40267" e_stop="40230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGGTTTAGTTGGTGGATAGGTTCAATTTTATACTAAGATAAGTTTATGACCACTCAATTTATTCTACAATATTTTTTTACAAATTTCACGGATAACTTTCATAAACTGCATGAACGTAGTTTGTTCTGAATCTGTAGATAATAATAAGCTTGTGTTTCTCCATAAAAAACCTTAAGAAAGGTTGTGTATCAACCACTCCATATTTTACCAACAATCTGTTATTTTTGATAAGTTATACAACTGAAGTGCTCTGTTTTGAAATTTACTCCGAGCAATTAATGGAGATTCTGATTAGTAACACAATAGAGAAACTTCTCAACCAACACTATAATTTCTCTCTTGACAGTTCTAACTTTTTTTACAAGATATGGAGGAATATCTAGAAGTAAATACAACAGGATATAAATACAA</genome_strand>
        <mrna_strand>TTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGNAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587086" ref_strand="+" ref_description="SGN-E587086 [78199]">
      <seq>cccctaacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttcagtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43163" stop="17958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42863" g_stop="42832" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="107" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="242" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40803" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="460" r_length="218" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40802" i_stop="40243" i_length="560">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.562" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40242" g_stop="40230" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="473" r_length="13" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E587086" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42863" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40803"/>
          <exon e_start="40242" e_stop="40230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGGTTTAGTTGGTGGATAGGTTCAATTTTATACTAAGATAAGTTTATGACCACTCAATTTATTCTACAATATTTTTTTACAAATTTCACGGATAACTTTCATAAACTGCATGAACGTAGTTTGTTCTGAATCTGTAGATAATAATAAGCTTGTGTTTCTCCATAAAAAACCTTAAGAAAGGTTGTGTATCAACCACTCCATATTTTACCAACAATCTGTTATTTTTGATAAGTTATACAACTGAAGTGCTCTGTTTTGAAATTTACTCCGAGCAATTAATGGAGATTCTGATTAGTAACACAATAGAGAAACTTCTCAACCAACACTATAATTTCTCTCTTGACAGTTCTAACTTTTTTTACAAGATATGGAGGAATATCTAGAAGTAAATACAACAGGATATAAATACAA</genome_strand>
        <mrna_strand>CCCCTAACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCAGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586142" ref_strand="+" ref_description="SGN-E586142 [60192]">
      <seq>cccaagtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaattcttgggcttctgaatttatgcatccttttactgagatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="42796" stop="17958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42496" g_stop="42449" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41020" g_stop="40764" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="304" r_length="256" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40763" i_stop="40483" i_length="281">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40482" g_stop="40461" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="326" r_length="22" r_score="0.636"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40460" i_stop="40243" i_length="218">
            <donor d_prob="0.877" d_score="0.00"/>
            <acceptor a_prob="0.562" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40242" g_stop="40230" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="339" r_length="13" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E586142" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42496" e_stop="42449"/>
          <exon e_start="41020" e_stop="40764"/>
          <exon e_start="40482" e_stop="40461"/>
          <exon e_start="40242" e_stop="40230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGGTTTAGTTGGTGGATAGGTTCAATTTTATACTAAGATAAGTTTATGACCACTCAATTTATTCTACAATATTTTTTTACAAATTTCACGGATAACTTTCATAAACTGCATGAACGTAGTTTGTTCTGAATCTGTAGATAATAATAAGCTTGTGTTTCTCCATAAAAAACCTTAAGAAAGGTTGTGTATCAACCACTCCATATTTTACCAACAATCTGTTATTTTTGATAAGTTATACAACTGAAGTGCTCTGTTTTGAAATTTACTCCGAGCAATTAATGGAGATTCTGATTAGTAACACAATAGAGAAACTTCTCAACCAACACTATAATTTCTCTCTTGACAGTTCTAACTTTTTTTACAAGATATGGAGGAATATCTAGAAGTAAATACAACAGGATATAAATACAA</genome_strand>
        <mrna_strand>CCCAAGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTCTTGGGCTTCTG-AATTTATGCATCCTTTTACTGAGA.........................................................................................................................................................................................................................................................................................TCAAAAAAAAAAAAAAAAAAAA..........................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462053" ref_strand="+" ref_description="SGN-E462053 [cPRO-10-O8]">
      <seq>gaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaattcttgggcttctgaaattatgcatccttttactgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43148" stop="17959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42850" g_stop="42832" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="94" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="229" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40764" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="485" r_length="256" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40763" i_stop="40243" i_length="521">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.562" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40242" g_stop="40231" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="497" r_length="12" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E462053" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42850" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40764"/>
          <exon e_start="40242" e_stop="40231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATTAAGGTTTATGAATAGTGCATTGAGTTATTTCTATATCGTACAATATTAGTTTCATATTTCCTAATAAAATTATTTGCAATGCTTGGTTTAGTTGGTGGATAGGTTCAATTTTATACTAAGATAAGTTTATGACCACTCAATTTATTCTACAATATTTTTTTACAAATTTCACGGATAACTTTCATAAACTGCATGAACGTAGTTTGTTCTGAATCTGTAGATAATAATAAGCTTGTGTTTCTCCATAAAAAACCTTAAGAAAGGTTGTGTATCAACCACTCCATATTTTACCAACAATCTGTTATTTTTGATAAGTTATACAACTGAAGTGCTCTGTTTTGAAATTTACTCCGAGCAATTAATGGAGATTCTGATTAGTAACACAATAGAGAAACTTCTCAACCAACACTATAATTTCTCTCTTGACAGTTCTAACTTTTTTTACAAGATATGGAGGAATATCTAGAAGTAAATACAACAGGATATAAATACA</genome_strand>
        <mrna_strand>GAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTCTTGGGCTTCTG-AAATTATGCATCCTTTTACTGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304426" ref_strand="+" ref_description="SGN-E304426 [cLEX-12-M19]">
      <seq>cggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctaaccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtgtagacaattttgtgctatgagttgaagatttgttactcattgaattgtcgggcttccgaaaattatgcaaccttttgctgaaaatattcatgtcctccaagcctctttttggttcctagtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43051" stop="40424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42842" g_stop="42832" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="86" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="221" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40724" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="518" r_length="297" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E304426" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42842" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATT</genome_strand>
        <mrna_strand>CGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAACCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTGTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTCGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAAGCCTCTTTTTGGTTCCTAGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283899" ref_strand="-" ref_description="SGN-E283899 [cLER-13-G4]">
      <seq>tccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaattatgcaaccttttgctgaaaatattcatgtcctccaggcctctttttggttcctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43017" stop="40422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42717" g_stop="42676" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="177" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41020" g_stop="40729" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="469" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="488"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E283899" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283899" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42717" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTA</genome_strand>
        <mrna_strand>TCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560940" ref_strand="+" ref_description="SGN-E560940 [20673]">
      <seq>tcagttcttctctgttgccctagctccgcatccccacccctaaccctagaacttccggcgacaatggcactaagaaggaaaaggctcctccaccgtcttccaagccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaaggggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcacccctttcagtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcaggaaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaattcttgggcttctgaatttatgcatccttttgctgaaatcattcttgtcctccaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43204" stop="40448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42905" g_stop="42832" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.851"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="139" r_length="73" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.895" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="276" r_length="137" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40747" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="549" r_length="273" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="560"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E560940" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42905" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAA-GGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCC-TTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAG</genome_strand>
        <mrna_strand>TCAGTTC-TTCT-CTGTTGCCCTAG-CTCCG-CA-TCCCCA-CCCC-TAACCCT-AGAACTTCCGGCGACAATG.................................................................................GCA-CTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAG-CCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTTCAGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGAAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTCTTGGGCTTCTG-AATTTATGCATCCTTTTGCTGAAATCATTCTTGTCCTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340247" ref_strand="+" ref_description="SGN-E340247 [cTOF-2-P9]">
      <seq>ttctgttgccctagcctccgccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaattatgcaaccttttgctgaaaantattcatgtcctccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43194" stop="40448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42894" g_stop="42832" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="138" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="273" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40747" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="548" r_length="275" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="549" polyA_stop="566"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E340247" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42894" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAA-TATTCATGTCCTCCAG</genome_strand>
        <mrna_strand>TTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAANTATTCATGTCCTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354023" ref_strand="+" ref_description="SGN-E354023 [cTOS-16-M15]">
      <seq>aacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaattatgcaaccttttgctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="42850" stop="40461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42550" g_stop="42449" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41020" g_stop="40756" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="367" r_length="265" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E354023" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42550" e_stop="42449"/>
          <exon e_start="41020" e_stop="40756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCAT</genome_strand>
        <mrna_strand>AACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294084" ref_strand="+" ref_description="SGN-E294084 [cLET-13-C18]">
      <seq>gccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaattatgcaaccttttgctggaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43175" stop="40461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42875" g_stop="42832" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="119" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="254" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40757" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="518" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E294084" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42875" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCA</genome_strand>
        <mrna_strand>GCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGGAAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573767" ref_strand="+" ref_description="SGN-E573767 [33129]">
      <seq>cccctaacccctagaaacttccggcgacaatggcaccttaagaaaggaaaaggctcctccaccgtcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttcagtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaattcttgggcttctgaatttatgcatccttttgctgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43163" stop="40461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42863" g_stop="42832" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="109" r_length="77" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="244" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40760" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="504" r_length="260" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E573767" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42863" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACC-TAAG-AAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATAT</genome_strand>
        <mrna_strand>CCCCTAACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTTAAGAAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCAGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTCTTGGGCTTCTG-AATTTATGCATCCTTTTGCTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308810" ref_strand="+" ref_description="SGN-E308810 [cLEZ-14-B23]">
      <seq>cgccaagtccggtggtggcaagcggaataagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaattatgcaaccttttgctgaagatgagctattccaacccatggagtgggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43009" stop="40462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42709" g_stop="42676" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="169" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41020" g_stop="40762" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="428" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E308810" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42709" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAAT</genome_strand>
        <mrna_strand>CGCCAAGTCCGGTGGTGGCAAGCGGAATAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740460" ref_strand="+" ref_description="SGN-E740460 [LC21CB03]">
      <seq>ctctcttcattccagttccttcttctgttgccctagcctccgccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacccaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaattatgcaaccttttgctgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43215" stop="40461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42916" g_stop="42832" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="160" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="295" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40764" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="552" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="562"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E740460" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42916" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAA</genome_strand>
        <mrna_strand>CTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732551" ref_strand="+" ref_description="SGN-E732551 [LB02BH11]">
      <seq>ctcttcattccagttccttcttctgttgccctagcctccgccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacccaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaattatgcaaccttttgctgaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43214" stop="40461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42914" g_stop="42832" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="158" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="293" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40764" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="550" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="574"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E732551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42914" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAA</genome_strand>
        <mrna_strand>CTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347771" ref_strand="+" ref_description="SGN-E347771 [cTOF-26-D11]">
      <seq>cgccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaattatgcaaccttttgctgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43176" stop="40461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42876" g_stop="42832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="120" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="255" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40764" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="512" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="524"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E347771" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42876" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAA</genome_strand>
        <mrna_strand>CGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E563141" ref_strand="+" ref_description="SGN-E563141 [1492]">
      <seq>cacccccttacccctagaaacttccggcgacaatggcacctaagnaaggaaaaggctcctccaccgntcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggnttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttggccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaattctggggcttctgaatttatgcatccttttactgagaaaaacaaaaccgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43166" stop="40461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42866" g_stop="42832" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="112" r_length="77" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.895" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="248" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40764" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="505" r_length="257" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E563141" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E563141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42866" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAG-AAGGAAAAGGCTCCTCCACCG-TCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGG-TTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTT-GCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAA</genome_strand>
        <mrna_strand>CACCCCCTTACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGNAAGGAAAAGGCTCCTCCACCGNTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGNTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTCTGGGGCTTCTG-AATTTATGCATCCTTTTACTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448741" ref_strand="+" ref_description="SGN-E448741 [cSTS-4-G14]">
      <seq>aaaaacttccggcgataatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagctcatcactgaagcacccaagtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagcctttcattttgtttgaaacactatgtcaaagacaattttgtgctatgagttgaagatttgttactcattgaattcttggtgcttctgaaattatgcaaccttttgctgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43051" stop="40461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42851" g_stop="42832" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="95" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="230" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40764" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="489" r_length="259" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="510"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E448741" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42851" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCC-TTCATTTTGTTTGAAAACACTATGT-TTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGG-GCTTCCGAAAATTATGCAACCTTTTGCTGAAA</genome_strand>
        <mrna_strand>AAAAACTTCCGGCGATAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTCATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTTCATTTTGTTTG-AAACACTATGTCAAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTCTTGGTGCTTCTG-AAATTATGCAACCTTTTGCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288670" ref_strand="-" ref_description="SGN-E288670 [cLES-8-L22]">
      <seq>tccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaattatgcaaccttttgctgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43017" stop="40461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42717" g_stop="42676" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="177" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41020" g_stop="40764" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="434" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="450"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E288670" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288670" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42717" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAA</genome_strand>
        <mrna_strand>TCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218000" ref_strand="+" ref_description="SGN-E218000 [cLEL-23-H2](-)">
      <seq>gccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccctgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaattatgcaaccttttgctgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43008" stop="40461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42708" g_stop="42676" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="168" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41020" g_stop="40764" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="425" r_length="257" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="445"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E218000" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42708" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAA</genome_strand>
        <mrna_strand>GCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCCTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464290" ref_strand="+" ref_description="SGN-E464290 [cPRO-17-F23]">
      <seq>aagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagctcatcactgaagcacccaagtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactgtgtcaagacaattttgtgctatgagttgaagatttgttactcattgaattcttggtgcttctgaaattatgctaccttttgctgaannanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="42887" stop="40465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42690" g_stop="42676" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="150" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41020" g_stop="40764" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="407" r_length="257" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="409" polyA_stop="447"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E464290" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42690" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGG-GCTTCCGAAAATTATGCAACCTTTTGCTGAAA</genome_strand>
        <mrna_strand>AAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTCATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTGTGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTCTTGGTGCTTCTG-AAATTATGCTACCTTTTGCTGAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283866" ref_strand="+" ref_description="SGN-E283866 [cLER-13-I19]">
      <seq>gccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaattatgcaaccttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43175" stop="40468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42875" g_stop="42832" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="119" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="254" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40768" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="507" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E283866" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42875" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCT</genome_strand>
        <mrna_strand>GCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301949" ref_strand="+" ref_description="SGN-E301949 [cLEX-3-I18]">
      <seq>tccgccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaagctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattgttgggcttccgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43178" stop="40485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42878" g_stop="42832" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="122" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="257" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40780" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="498" r_length="241" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E301949" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42878" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATG</genome_strand>
        <mrna_strand>TCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAAGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691541" ref_strand="+" ref_description="SGN-E691541 [LH_Ea06G03]">
      <seq>cccgttgctccccatccccttacccctaagaacttccggcgacccttgcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacccaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaagctttaatatttagactttgttgtttattagccttcattttgtttgaaacactatgttaagacaattttgtgctatgagttgaagatttgttactcattgaattcttgggcttccgaaaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43171" stop="40482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42878" g_stop="42832" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.830"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.83"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="122" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="257" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40783" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="494" r_length="237" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="504"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E691541" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42878" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATT</genome_strand>
        <mrna_strand>CCCGTTGCTCCCCATCCCCTTACCCCTAAGAACTTCCGGCGACCCTT.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAAGCTTTAATATTTAGACTTTGTTGTTTATTAGCCTTCATTTTGTTTG-AAACACTATGTTAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTCTTGGGCTTCCGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695381" ref_strand="+" ref_description="SGN-E695381 [LH_Ea06G03](-)">
      <seq>ccgctccccatccccttacccctaagaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacccaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaagctttaatatttagactttgttgtttattagccttcattttgtttgaagcactatgttaagacaattttgtgctatgagttgcataaaaggtactcattgaattcttgggcttccgaaaattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43174" stop="40482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42874" g_stop="42832" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="118" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="253" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40783" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="490" r_length="237" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="491" polyA_stop="504"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E695381" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42874" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATT</genome_strand>
        <mrna_strand>CCGCTCCCCATCCCCTTACCCCTAAGAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAAGCTTTAATATTTAGACTTTGTTGTTTATTAGCCTTCATTTTGTTTG-AAGCACTATGTTAAGACAATTTTGTGCTATGAGTTGCATAAAAGGTACTCATTGAATTCTTGGGCTTCCGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567517" ref_strand="+" ref_description="SGN-E567517 [11655]">
      <seq>caccccttaccttagaaacttccggcgacaatggcactaagaaggaaaagggtcctccaccgtcttccaagcccgccaaatcccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtaccttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcaggggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaattcttgggcttctgaatttatcctcgtgccgaattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43166" stop="40479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42866" g_stop="42832" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="108" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="244" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40786" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="480" r_length="236" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E567517" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42866" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGT-CCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTA-CATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTA-GGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAA</genome_strand>
        <mrna_strand>CA-CCCCTTA-CCTTAGAAACTTCCGGCGACAATG.................................................................................GCA-CTAAGAAGGAAAAGGGTCCTCCACCGTCTTCCAAGCCCGCCAAATCCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACCTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTCTTGGGCTTCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261989" ref_strand="+" ref_description="SGN-E261989 [cLEG-58-B9]">
      <seq>ttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctcctccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttggtgtttattaaccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaattggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43159" stop="40496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42859" g_stop="42832" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="103" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="238" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40796" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="463" r_length="225" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E261989" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42859" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGG</genome_strand>
        <mrna_strand>TTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCTCCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGGTGTTTATTAACCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341696" ref_strand="+" ref_description="SGN-E341696 [cTOF-9-C10]">
      <seq>ccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaaanaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43163" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42863" g_stop="42832" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="107" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="242" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40797" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="466" r_length="224" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E341696" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42863" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTG</genome_strand>
        <mrna_strand>CCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAAANAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203370" ref_strand="+" ref_description="SGN-E203370 [cLEB-3-P23]">
      <seq>gcacgagaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagattgttactcattgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43041" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42745" g_stop="42676" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="204" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41020" g_stop="40798" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="426" r_length="222" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E203370" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42745" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTT</genome_strand>
        <mrna_strand>GCACGA-GAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGA-TTGTTACTCATTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400108" ref_strand="+" ref_description="SGN-E400108 [cSTC-4-J2]">
      <seq>cttcattccagttccttcttctgttgccctagcctccgccactccccacccccttacccctaaaaacttccggcgataatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagctcatcactgaagcacccaagtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactgtgtcaagacaattttgtgctatgagttgaagatttggtactcattggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43212" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42912" g_stop="42832" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="156" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="291" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="508" r_length="217" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="520"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E400108" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42912" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</genome_strand>
        <mrna_strand>CTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCACCCCCTTACCCCTAAAAACTTCCGGCGATAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTCATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTGTGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGGTACTCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717316" ref_strand="+" ref_description="SGN-E717316 [FB19DD07]">
      <seq>cttcattccagttccttcttctgttgccctagcctccgccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacccaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcnttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43212" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42912" g_stop="42832" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="156" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="291" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="508" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="525"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E717316" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42912" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</genome_strand>
        <mrna_strand>CTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCNTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458293" ref_strand="+" ref_description="SGN-E458293 [cPRO-5-C10]">
      <seq>ccagttccttcctctgttgccctagcctccgccactccccacccccttacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43205" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42905" g_stop="42832" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="149" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="284" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="501" r_length="217" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="512"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E458293" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42905" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</genome_strand>
        <mrna_strand>CCAGTTCCTTCCTCTGTTGCCCTAGCCTCCGCCACTCCCCACCCCCTTACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338680" ref_strand="+" ref_description="SGN-E338680 [cTOE-15-J16]">
      <seq>ttccttcttctgttgccctagcctccgccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgcctagccagcagatttaccacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgnnnaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43201" stop="40505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42901" g_stop="42832" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="145" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="280" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="499" r_length="219" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="513"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E338680" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42901" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATG-CTAGCCAGCAGATTTA-CACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</genome_strand>
        <mrna_strand>TTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCCTAGCCAGCAGATTTACCACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619651" ref_strand="+" ref_description="SGN-E619651 [70344]">
      <seq>ctagcctccgccactccccacccccttacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43184" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42884" g_stop="42832" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="128" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="263" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="480" r_length="217" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E619651" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42884" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</genome_strand>
        <mrna_strand>CTAGCCTCCGCCACTCCCCACCCCCTTACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585223" ref_strand="+" ref_description="SGN-E585223 [66942]">
      <seq>tgcctccgccactccccaccccctaacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttcagtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaaaaaaacaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43181" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42882" g_stop="42832" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="126" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="261" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="478" r_length="217" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="507"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E585223" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42882" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</genome_strand>
        <mrna_strand>TGCCTCCGCCACTCCCCACCCCCTAACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCAGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459164" ref_strand="+" ref_description="SGN-E459164 [cPRO-27-C19]">
      <seq>ccgccactccccacccccttacccctaaaaacttccggcgataatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagctcatcactgaagcacccaagtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactgtgtcaagacaattttgtgctatgagttgaagatttgttactcattgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43051" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42877" g_stop="42832" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="121" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="256" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="473" r_length="217" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="484"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E459164" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42877" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</genome_strand>
        <mrna_strand>CCGCCACTCCCCACCCCCTTACCCCTAAAAACTTCCGGCGATAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTCATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTGTGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345915" ref_strand="+" ref_description="SGN-E345915 [cTOF-24-H5]">
      <seq>catccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43166" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42866" g_stop="42832" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="110" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="245" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="462" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="463" polyA_stop="473"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E345915" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42866" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</genome_strand>
        <mrna_strand>CATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715530" ref_strand="+" ref_description="SGN-E715530 [FB14CC03]">
      <seq>cttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacccaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43160" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42860" g_stop="42832" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="104" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="239" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="456" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="467"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E715530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42860" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</genome_strand>
        <mrna_strand>CTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624022" ref_strand="-" ref_description="SGN-E624022 [89168]">
      <seq>cggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttcagtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgcaaacaaacaaacaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43051" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42842" g_stop="42832" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="86" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="221" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="438" r_length="217" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="469"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E624022" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624022" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42842" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</genome_strand>
        <mrna_strand>CGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCAGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216418" ref_strand="+" ref_description="SGN-E216418 [cLEL-1-B3](-)">
      <seq>aggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaaccctatgtttagacaattttgtcctatgagttgaagatttgttnctccttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43034" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42734" g_stop="42676" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="194" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="411" r_length="217" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="412" polyA_stop="429"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E216418" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42734" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</genome_strand>
        <mrna_strand>AGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACCCTATGTTTAGACAATTTTGTCCTATGAGTTGAAGATTTGTTNCTCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586881" ref_strand="+" ref_description="SGN-E586881 [75717]">
      <seq>agcacccaagtataagcttatcaccccttcagtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="42800" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42500" g_stop="42449" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="269" r_length="217" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="270" polyA_stop="279"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E586881" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42500" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</genome_strand>
        <mrna_strand>AGCACCCAAGTATAAGCTTATCACCCCTTCAGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586952" ref_strand="+" ref_description="SGN-E586952 [75788]">
      <seq>accccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttgttactcattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="42778" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42478" g_stop="42449" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="247" r_length="217" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E586952" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42478" e_stop="42449"/>
          <exon e_start="41020" e_stop="40804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</genome_strand>
        <mrna_strand>ACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309928" ref_strand="+" ref_description="SGN-E309928 [cLEZ-10-O4]">
      <seq>tctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="41327" stop="40503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41020" g_stop="40804" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="232" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E309928" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41020" e_stop="40804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</genome_strand>
        <mrna_strand>ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287939" ref_strand="+" ref_description="SGN-E287939 [cLES-7-G15]">
      <seq>gccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43175" stop="40505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42875" g_stop="42832" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="119" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="254" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40805" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="470" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E287939" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42875" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTG</genome_strand>
        <mrna_strand>GCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286286" ref_strand="+" ref_description="SGN-E286286 [cLES-11-H22]">
      <seq>ccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaattagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgagctacaaacacctaaggctttaatatttagagtttgttgtttattagccttcattttgtttgaaaacactatgtttagacaattttgtgctatgagttgaagatttgttactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43169" stop="40508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42869" g_stop="42832" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="113" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="248" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40809" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="460" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="470"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E286286" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42869" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTC</genome_strand>
        <mrna_strand>CCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E606890" ref_strand="-" ref_description="SGN-E606890 [22843]">
      <seq>ctctgttgccctagcctccgccactccccaccccctaacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttcagtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgagttgaagatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43193" stop="40515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42894" g_stop="42832" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="138" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="273" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40815" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="479" r_length="206" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E606890" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606890" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42894" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTG</genome_strand>
        <mrna_strand>CTCTGTTGCCCTAGCCTCCGCCACTCCCCACCCCCTAACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCAGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAGTTGAAGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484832" ref_strand="+" ref_description="SGN-E484832 [cSTE-15-B3]">
      <seq>cttcattccagttccttcctctgttgccctagcctccgccactccccacccccttacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43212" stop="40527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42912" g_stop="42832" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="156" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="291" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40818" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="494" r_length="203" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E484832" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42912" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGAT</genome_strand>
        <mrna_strand>CTTCATTCCAGTTCCTTCCTCTGTTGCCCTAGCCTCCGCCACTCCCCACCCCCTTACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E565391" ref_strand="+" ref_description="SGN-E565391 [3832]">
      <seq>cctaacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttcagtcctctctgaccgtcttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcacgatggtgtctgctcatgctagccagcagatttacacccgggctaccaacagctaaggctttaatatttagactttgttgtttaattagccttcatttttgtttgaaacactatgtcaagaccattttgtgctatgagttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43161" stop="40520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42861" g_stop="42832" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="105" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="241" r_length="136" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40820" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="443" r_length="202" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E565391" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E565391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42861" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGT-TTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAG</genome_strand>
        <mrna_strand>CCTAACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCAGTCCTCTCTGACCGTCTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCACGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACAGCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTTGTTTGAAACACTATGTCAAGACCATTTTGTGCTATGAGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E564566" ref_strand="+" ref_description="SGN-E564566 [2815]">
      <seq>cggcacgaggccgccactccccaccccctaacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttcagtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaagatggtgtctgcctcatgctaaccagcaatttacacccgggctaccaacacctaaggcctttaatattttacactttgttgtttaattaaccttcattttgttttgcaaacactatgtccacaacaattttgtgcctatgagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43177" stop="40522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42889" g_stop="42832" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.810"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="131" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="266" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40822" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="471" r_length="205" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E564566" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42889" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTG-CTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGG-CTTTAATA-TTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTG-TTTGAAAACACTATGTTTA-GACAATTTTGTG-CTATGAGTTGA</genome_strand>
        <mrna_strand>CGGCACGAG--GCCGCCACTCCCCACCCCCTAACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCAGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAAGATGGTGTCTGCCTCATGCTAACCAGCA-ATTTACACCCGGGCTACCAACACCTAAGGCCTTTAATATTTTACACTTTGTTGTTTAATTAACCTTCATTTTGTTTTGCAAACACTATGTCCACAACAATTTTGTGCCTATGAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465454" ref_strand="+" ref_description="SGN-E465454 [cPRO-21-M5]">
      <seq>ttcattccagttccttcctctgttgccctagcctccgccactccccaccccctaacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaatttttgtgctatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43211" stop="40525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42911" g_stop="42832" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="155" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="290" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40825" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="487" r_length="197" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E465454" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42911" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAA-TTTTGTGCTATGAGT</genome_strand>
        <mrna_strand>TTCATTCCAGTTCCTTCCTCTGTTGCCCTAGCCTCCGCCACTCCCCACCCCCTAACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTTGTGCTATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576321" ref_strand="+" ref_description="SGN-E576321 [59520]">
      <seq>cagttccttcctctgttgccctagcctccgccactccccacccccttaccccgtagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttccgtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaactatttagactttgcttgtttaattagccttcatttcgtttgaaacactatgtcaagacaattttgtgctatgagcttgacacatttgttacctcattgacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43204" stop="40504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42904" g_stop="42832" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="149" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="284" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40827" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="480" r_length="196" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E576321" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42904" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCC-TAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAA-TATTTAGAGTTTG-TTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGA</genome_strand>
        <mrna_strand>CAGTTCCTTCCTCTGTTGCCCTAGCCTCCGCCACTCCCCACCCCCTTACCCCGTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCCGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAACTATTTAGACTTTGCTTGTTTAATTAGCCTTCATTTCGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579045" ref_strand="+" ref_description="SGN-E579045 [86169]">
      <seq>ccactccccacccccttacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtctttcaaggcccgccaagtccggttggtggcaagcaaaaaagaagaagtggagcaagggaaagcaaaaggagaaggtgaccaacatggtttttgtccgataagggtacttacgacaagctttatcacttgaagcacccaagtataagcttatcacccctttccgtcctctctgaccgttttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtgctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43174" stop="40527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42874" g_stop="42832" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="119" r_length="76" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.85"/>
            <acceptor a_prob="0.895" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="259" r_length="140" r_score="0.889"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40827" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="453" r_length="194" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E579045" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42874" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAA-GCCCGCCAAGTCCGG-TGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGG-TTTTGTTCGATAAGGGTACATACGACAAGC-TTATCAC-TGAAGCACCCAAGTATAAGCTTATCACTCC-TTCCGTCCTCTCTGACCG-TTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGA</genome_strand>
        <mrna_strand>CCACTCCCCACCCCCTTACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTTCAAGGCCCGCCAAGTCCGGTTGGTGGCAAGCA-AAAAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGACCAACATGGTTTTTGTCCGATAAGGGTACTTACGACAAGCTTTATCACTTGAAGCACCCAAGTATAAGCTTATCACCCCTTTCCGTCCTCTCTGACCGTTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTGCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587393" ref_strand="-" ref_description="SGN-E587393 [78509]">
      <seq>gcacgaggcgccactccccaccccctaacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttcagtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattttgtttgaaacactatgtcaagacaattttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43176" stop="40533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42884" g_stop="42832" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.792"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="128" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="263" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40833" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="451" r_length="188" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E587393" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587393" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42884" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTG</genome_strand>
        <mrna_strand>GCACGAGGCGCCACTCCCCACCCCCTAACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCAGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTTTGTTTG-AAACACTATGTCAAGACAATTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579406" ref_strand="+" ref_description="SGN-E579406 [86534]">
      <seq>gcacgagggtccttcctctgttgccctagcctccgccactccccaccccctaacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttcagtcctctctgaccgtttgaggattagtggatcccttgccaggaaggcaatcagggaattgatggctaaaggtttgatcaggatggtgtctgctcatgctagccagcagatttacacccgggctaccaacacctaaggctttaatatttagactttgttgtttaattagccttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43205" stop="40566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42910" g_stop="42832" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="153" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="288" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40866" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="444" r_length="156" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E579406" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42910" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTT-ATTAGCCTTCATTT</genome_strand>
        <mrna_strand>GCA-CGAGGGTCCTTCCTCTGTTGCCCTAGCCTCCGCCACTCCCCACCCCCTAACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCAGTCCTCTCTGACCGTTTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGATCCCTTGCCAGGAAGGCAATCAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGGGCTACCAACACCTAAGGCTTTAATATTTAGACTTTGTTGTTTAATTAGCCTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337430" ref_strand="+" ref_description="SGN-E337430 [cTOE-18-L15]">
      <seq>attccagtaccttcttctgttgccctagcctccgccactccccatccccttacccctaataacttccggcgacaatggcacctaagaaggaaaaggctcctccaccggcttccaagcccgccaagtccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagctgatcactgaagcacctaagtataaactaatcactccttccgtcctctctgaccgttggaggaatagaggatcccttgccaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43208" stop="40697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42908" g_stop="42832" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="152" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42449" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="287" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41020" g_stop="40997" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="311" r_length="24" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E337430" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42908" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42449"/>
          <exon e_start="41020" e_stop="40997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTTGGTTTAGTCCTATATGGGAAAAGCAAGCTCTCATATGGTGAAATTGATACACTGAAGCTGATTAATCATTTTCCAAGTCTTGTATAGTTGTTTATGAAATTATTTTCTTGAATGGTAAAAGAATTAGATCAAGATGTTAGATTAAACGAGGAGCCAAATAAATATAGTTCAGAGATATTGTTTAGGTGGTGGACTTGCTGTTCTGATAACCAACTTTTTTTAAAAAAATCTGGAAAATTAAGCTAGATATTCTGGTTTGTAAGGTGAACAAATTAGTGCTCTTTAATAACATACCCATTGTAGTCACATTTCTGAAATATAGAGCCTGTTTGAATTGGTTTAAAAGTTAGTCAAACTTATTTCAAGTCATTTTTAGCTTTTGGAAGTGTTTGACAAGCTTAAAAATAAGTTTAATTTAGTTTAAAATAAGTTAGAAATGTCTAGGAAAAAAATCTAAAAACCCACAAGTAGGTCTTCCCTTGGAAGTCATTTAAATTGCTTTTTACTTTTGGCTTGAAAGCTTACTTTTTTGAAGTCAATCCAAACAGATTCATAGTTTTTGCCCTCAAACCAAATACACATTCCTTTTGTTTTCTTTTGGAAAATAGAAAATAAATTATTATTTGGAGTTATTTTCTAGTTTTACAAGAACTTGTATTTTGTTAAATCTAGTGCACTACATGCAGTGCTGACTGCTAAAATGGAGTTATTTTCCCCTGCTGCAAGTTATTCATGAATTTATGTTTGATATTTTCTTCTTTAAGACACTCAACACTATATTTTCTTCTCTGAGGCACCCACCACTAATTTCTGACGGGAAAAGCCATACGTTACATTTATTATATGAAATGTAAATCCAATCGCTCCGGTTGGTTCTCTAAATATACTCACGTGGGAATCGTACATCTGTTAATCCAAATTTCAGCTTGTGCTCTAAAGGATTGTTGTACAGTTGCTTTTGTTGCGGATAGATTGTTGATATGCTGATGATATTCTCATGCTAATATAGTTTGTTTTGATTGAATTTGCAGATTAGTGGATCCCTTGCCAGGAAG</genome_strand>
        <mrna_strand>ATTCCAGTACCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGGCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTGATCACTGAAGCACCTAAGTATAAACTAATCACTCCTTCCGTCCTCTCTGACCGTTGGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGATCCCTTGCCAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246699" ref_strand="+" ref_description="SGN-E246699 [cLEF-45-M4]">
      <seq>caagcagaagaagaagaagtggagcaagggaaagcaaaaggaaaaggtgaacaacatggttttgttcgataagggtacatacgacaagcttatcactgaagcacctaagtataagcttatcactccttccgtcctctctgaccgtttgagggtatgtgtattcttttagcatggatctagttattatgtattgaatatgaagtgtgttttgtgcaatgtgaatatgcttgcttataagaatgaatttttatcaattgtgggtcatttagattagttattgaaatatattgcccagggttctgtgtggtatagtttgtgaagttgtcgaatgattctacggtgtttatatttgaatagttgtgttttacataaactaactcagctgaaaagcatagctagtgaattgtggtgttgtagattttcaaaatacttggcagcagtagtgtacgagtctagcaatagtgtatgagtctaatgatttagttctggttgagtcgcagcagacaagtttgtttttggtttttggagtatgtgtaccaaatttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="42887" stop="41752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42691" g_stop="42676" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42583" g_stop="42052" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="548" r_length="532" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E246699" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42691" e_stop="42676"/>
          <exon e_start="42583" e_stop="42052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTT</genome_strand>
        <mrna_strand>CAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCTAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAATTGTGGGTCATTTAGATTAGTTATTGAAATATATTGCCCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTTGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTATGTGTACCAAATTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570867" ref_strand="+" ref_description="SGN-E570867 [15519]">
      <seq>acttcattccagttccttcctctgttgccctagcctccgccactccccaccccctaacccctagaaacttccggcgacaatggcacctaagaaggaaaaggctcctccaccgtcttccaagcccgccaaatccggtggtggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaacatggttttgttcgataagggtacttacgacaagcttatcactgaagcacccaagtataagcttatcaccccttcagtcctctctgaccgtttgagggtatgtatattcttctagtatggatctagttgttatgtattgaatatgaagtgtgtgttttgtgcaatgtgaatatgctgcttataagaatgaattttatcaattgtgggtcatttaggttagatattgaaatgtatgctcaggttctgtgtggtagttcaggaagttgtcgaatgattctactctgtttatacttgaataattgagttttacatcaactaactcaactgaaaagctagctagtgagctgtggtgttatagattttcaaaatacttggcagcaatagtgtattagtctagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="43212" stop="41840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42913" g_stop="42832" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42750" g_stop="42676" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="157" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42583" g_stop="42140" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="596" r_length="439" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E570867" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42913" e_stop="42832"/>
          <exon e_start="42750" e_stop="42676"/>
          <exon e_start="42583" e_stop="42140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAGGTCATACTTATTTTCACATTTATGTATTTGTTTTGTTGGTAACTAGGTAAAGTTTGAGTTTTTAATGGTGGGTTTTGAATGTGGAATTGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAA--GTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAAT</genome_strand>
        <mrna_strand>ACTTCATTCCAGTTCCTTCCTCTGTTGCCCTAGCCTCCGCCACTCCCCACCCCCTAACCCCTAGAAACTTCCGGCGACAATG.................................................................................GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAG............................................................................................AAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACTTACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACCCCTTCAGTCCTCTCTGACCGTTTGAGGGTATGTATATTCTTCTAGTATGGATCTAGTTGTTATGTATTGAATATGAAGTGTGTGTTTTGTGCAATGTGAATATGC-TGCTTATAAGAATGAA-TTTTATCAATTGTGGGTCATTTAGGTTAGATATTGAAATGTA-TGCTCA-GGTTCTGTGTGG--TAGTTCAGGAAGTTGTCGAATGATTCTACTCTGTTTATACTTGAATAATTGAGTTTTACATCAACTAACTCAACTGAAAAGC-TAGCTAGTGAGCTGTGGTGTTATAGATTTTCAAAATACTTGGCAGCAATAGTGTATTAGTCTAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711685" ref_strand="+" ref_description="SGN-E711685 [FB02CG05]">
      <seq>ccgatagcacaagaagatgaacaagaaggaagtgtttaagctacctaaagggtttcgaggaagagctaaaaattgcataagaatagcaagagaaagagttgagaaggcgcttcagtactcatacagagaccgccgcaacaagaagagggatatgcgttctctctggattcaacgcatcaatgccggaactcgtcaacacggggtgaattatggcaatttcatgcacgggttgatgaaggagaacgtacagctgaacaggaaagtcttgtcagaactgtcaatgcacgaaccatacagcttcaaggccctcgtggatgtctctcgcagcgctttccctgggaataagaagtccatagtacctccaaagaaggaaggacttgctgttgttctttgaattagtttcctgtgttgtgctttgtgtactcttcttcttcttcgttaggcataattttgtgctagcatttctgttagcaagtttctaccaatggtattgaagtcttctgtttacgacagtgctttaatggaaatttaattttatgttactactcttccgtccactttgtctannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanttcggggggggggggcgggccccctttcccccttaagggggggagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="47964" stop="17950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47666" g_stop="47465" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44150" g_stop="43753" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="598" r_length="396" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43752" i_stop="43640" i_length="113">
            <donor d_prob="0.000" d_score="0.58"/>
            <acceptor a_prob="0.987" a_score="0.37"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43639" g_stop="43591" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="647" r_length="49" r_score="0.367"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43590" i_stop="42751" i_length="840">
            <donor d_prob="0.900" d_score="0.37"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42750" g_stop="42735" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="663" r_length="16" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E711685" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47666" e_stop="47465"/>
          <exon e_start="44150" e_stop="43753"/>
          <exon e_start="43639" e_stop="43591"/>
          <exon e_start="42750" e_stop="42735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGGGTATGTATAAACCCCTTTTCTCATTTTTTGCAGTTTTTGATTTGTGGGGTTTTTCCCCTTTTCAATATTTTGTCGAATTTGAGTTTTGCTTGGTGTCTTGCTTTTTCTTTACTTTATGATGTGTGCTTAGTCATGGTTGTTGCAGCATGTTGAACCTTTATCATATTAGATGAGTAGTCTTGAAAAATGTAGCTGGCCCAATTAAATATTGCGAGAAGTTTTTGAAAGATAGTGCCCTAAAGGTTGGAGAATCCCGGGACTTGCTCAAGATTTTATCTTGATAAAGATGAAGGTTATATATTAAGGCACAAAGCCTAGTATCCATCCTCTATGGCTAGGATTACGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGCTTTCACTGTTGGTGTTCTTTCTGATCTCTACACATTTCACTGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTTCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATACGAATTCTCCTATATCAATAAGAGACGTGTTTGGGCCCGCTTTGAAAACAGCCAGGAACTACTAGCACAAGATCCAATATTTGATAAGGTTCCATACCCGTAAGGGTTCCAAGCTTCAACCCACAGCTCGAGCATCTTGCTTATATATTGACTTTTCTTGAAAGGGTTCTTTCCAAATGAAAGAATTCATTATGACAGCGGTTCCGAAAAGACAGATTAGACTTGCCCGACCCGGGCATAAGCAGGAAGAAGACTCTGTCGGATTACAATACACAGAGAGAGTATCTATTGACAGTAGGCATCAAGGGGGTAAGCTTTTAAAGGATTTCAATTAGTGTCTACATATATAAGGAACAAACGAAGCAACATGTTATTGCAGTATATCTTTGTCGTATCATTCTATTGATTGATCAATCATTCAATACCAAAGTGATCCATGAAGTTGTATAGCCTATGCCACTCCAATACCAAATCAGTAGAGGTTTTGTAAATCTCACACTTATCCTATGTGATACACAAGTAATTAACCAACTACGAAGACTCCTGGACAAAAATGGACCTAATGTAGTGTAACAGCAGTATCTAAGCTTACTATCAACTATTTGCTATGTCTATGTGGATCCTTTGCTTCTATTGTGTGTTATGTTATTAGTTAAGCTCACGTTGATTTCTCAGAGATTTTGGGTGAGACAACTTTTCTCCCTGTAAATTTACCTAGTTTCATTTGGCACCTTCAGTTATCATATAATGCTCCTAACAAACAATTGCATTTGAGGTTACAAGGAAATAGAAAACATATCTTAGATGACATTCTCTCTATATTCTTCTACATCCTCTGTTGAAATAATTTATGATCTTGTCCAATATTGTATGCTTGTACGTCTATCTTAGCAAAAACAGTTCTTTGACACTCATCTTGTAAATATGTTGGGTGCCAGATGCCTGACGTTCACTCTCATACAACATTGTTGGCTTCACAATTATTCTGTTAGACTTGTCTTTTTTACTTACTTAGGTATCTTCATATCTTTCCTTCTATGTTTCTTTAGCCTTCCTATTGTTATTCTAGTTTTTCTCCTCTATTATCCTTTGGCTCTTTTAGGGTTATCTTTTGATTTTTGAGCCACTAGCCTTAGTTCTTGAACCTTCTGTGTGGAGAATCATACCTTTGTCTATTGGATCTTAAATAGCTCAACATTAATGCTGCTGGATTCTAGAAATTTTGTGGTTCTTACTAGAATTTTCAGCATTGGGATAGGATACCAGAATGGCTGTAAAGTTCCATAATTAAATTAGGGAGCCTGGTATGCCAGTCAAAGAGCAAAATTGCAGGACCCTCAGCAGTGATAACAAAATATGCGTAAGAGTTAAGCTGAATATTCAATTTCCGTTGTTGATACATCTAATCTCCAATGGACTAAGGATTCTTCATAGTGAATAGCTTAACAAAGTACTATTAACTACAAATTTCTAGTTATCTTACACTGCAAAATCAGATAATTATAGATAGAAGCAATGGTTAAGGGAAACATACTTGGTTTACTTTATCCAAAGAAAGGGGAACATACTTGGTTTGTGAAATCTCGTTCTAGAAATGGAGATATTATGAAGGGAGATGCCTCAGGATTCATCCTTATTAACTTTCCACTATTTGCTTTTAGAAACTTGGATGTGGAGGATTTTGAAGAGCATACATTTTCTAAGTTCTACTTTGGGTCTAGGTAATCTTGAAAATAGGAACTTGCTAAAATTGCTTTCAAGGCCACAATAGTACTAATCCTTATAGAACACTATGATTTTTATTTTTTATTTTGAGAATGAGAACACTAGGATTTTGAAGTGCCTTAGTATCCTCCTCCTACACTTTAGGTTCCTTTTTTCAAATAAAGGTGGTGTCAGGACAACTTGTGATTGTTCCACTGTGTACCTATTACATCCCACCAATGCGGCTTAGACAAATTGGACGATATCTTCTGCTCTTCATCTTTTTCAGCATTGTGGAATTCAATATTTGTTAGACACTTTGACTATCCAAATGACAGTGGGGGAAATACCCTATAAAGCTCATAGGCCATAGCTGGAAGATATTGCAGTAGTTCCTTGATATGATAATGATGAAAAGAAGAGAACAAAATGTTGTAGGTGCCCTCGTAGTTATCCTTAGGTAACATGAATGATTCGAGGAACTGACCTCTTAACTGGCACAAATATTCTTTGGTCGTTTTTGCATGTGTCATACTTGCCGCCATACATGCTGTCAGATATTTATTATGAAATTCAGTACTTCTCAGGATCATGTTGTTGGCTCCATTTGGTTAATCTGTGTGTTATTGTTTGAACAGCCTTGTTGCTTTAGATTTTTATGGTAGTACAGCATTGCAAATGGATTTGTTAATCCATTTGATTAGAATATTTGGCCTTATGATTAGTATCTGTGCTTCTTCGTTCTTTCGTTTCTTGTTGTAGTCCTTTTTGTTCCCTCAACTTATTAGTGCCAAAGCCCAAAAGTATATGAAACTCTCTCTCTTTCTGCTTCCCTCTCTTCTGCATGATCAGAAAAGAAACAGAAAACTAATTAGGATATTATTCAACAGTGTACTTTAGCTGAAATAAGCTGCTTTGGTATGTTTGTCACCAATTTTTGACATGAACTTGGCCATTGACGCAGGTCGCTCTACCTGTTAACTAATCATATCTGATGTTCCTAAATGATATTTTTAGCACATCTTTCTACAAGTTAAACAAAAAAAACACCTCTATCTCATCTATTTAACAATTTTCCGATTTCCCTCCAATTCCAGGTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTAATTTTATGTTACTACTCTTCCGTCCACTTTTATTCTGTTTACTGTAATAAAAAATTGCAAAACATATTTCACTTGTTAAATACTGTAATTATTTTCAGTTCATCTTGTAAACTACTTTATTACTTAAATGAATTATACGTATTAAATTATGTCATTTTTTCCCTAATCATATTATATATCAGGTATAAAAGAGAACTCTAGCCTACCTACGTGGCGCTACTACAAATCAAAATTTCCTTTAATTTATTTCTTTTCAAAGATATCTTTTTCTTTCACGAAAAGTTGTGATTTTTATGAAAAATTATGACTTTTACGAAGAATTGTGATTTTATAAAAAATTGAAACTTTTATGATAGGTTATAACTATTAAAAAAAATACGTGTTTTGCAATTAGTGTTTTAATACGTGCTTTGCGAGTAAGGATTTTCAAATAATATGGCTCAATGGAACTTTGATGATTGTTAAAAGTTTTTGGAATACTTTATTTAGACACCGTTATTAAATCTATATCACCCTTTAAATATTTTTATTTGGCTATACACTTCAAAATATCTTCCTATATGCGATGTGTGGAGTGAGAAATGCTAACTACATACAATTGAAATCTTGAACTTCAAGTAAAAATGGCTGAAGCTTACATATCGCTGGTGTTTAGGCAAAAATAATTGAACTTTAATAATATGTGTATGAAATTTGAGATATTTTATTTGAAATTAAAGTTTAATCTCACAAAATAATTTTAACGTGAACAGTCGATAAGCATGACTTAAATGGTTCGAAATTGAGCATCCATGCCTTTCGGCCTGATGAGTGAAGCCCATACGGCCCAGAATAAATTAAAGCCCATACGAACTGATCCAATAAAAACCCTAGAATCCCTAAATTTAGGTTTAGAAATAGCGCCTTTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATGGTAAGCTTCTCTACTACTGTTGTGAGTAGTGTTGTATGTATTTTGAGAATTGAGTGCTGATATGTTTGATTTTGTTTGCAGGCACCTAAGAAGGAAA</genome_strand>
        <mrna_strand>CCGATAGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTACCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCAATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTTTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTAATTTTATGTTACTACTCTTCCGTCCAC-TTT-GTCTANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.................................................................................................................AAAAAAAAAAAANTTCGGGGGGGGGGGGCGGGCCCCCTTTCCCCCTTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGGGAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431396" ref_strand="-" ref_description="SGN-E431396 [STM-55-K6]">
      <seq>agaaggcgatacaagatgaccaaaaaggaagtgtttaagctagctaaagggtttcgaggaagagctaaaaactgcataagaatagctagagaaagagtggagaaggcgcttcagtactcatatagagaccgccgcaacaagaagagggatatgcgttctctctggattcaacgcatcaatgccggaactcgccaacatggggtgaattatggcaatttcatgcacgggctgatgaaggagaacgtacagctgaacaggaaagtcttgtcagaactgtcgatgcatgagccatacagcttcaaggcccttgtggacgtctctcgcagcgctttccctgggaataagaagtccatagtacctccaaagaaggaagggcttgctattgttctttgaattaatttcctatgttgtgctttctttgtgtactctttttcttctattttgggcataattttgtgctagcatttctgttagcaaatttaccaatggtattgaagtcttctgtttactgcaagtgcttaaatggaaatttaatatgctttaattttaaaaaaaaaaaaaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="47955" stop="17957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47665" g_stop="47465" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44150" g_stop="43809" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="546" r_length="345" r_score="0.895"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43808" i_stop="43640" i_length="169">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43639" g_stop="43619" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="567" r_length="21" r_score="0.476"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E431396" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431396" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47665" e_stop="47465"/>
          <exon e_start="44150" e_stop="43809"/>
          <exon e_start="43639" e_stop="43619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGGGTATGTATAAACCCCTTTTCTCATTTTTTGCAGTTTTTGATTTGTGGGGTTTTTCCCCTTTTCAATATTTTGTCGAATTTGAGTTTTGCTTGGTGTCTTGCTTTTTCTTTACTTTATGATGTGTGCTTAGTCATGGTTGTTGCAGCATGTTGAACCTTTATCATATTAGATGAGTAGTCTTGAAAAATGTAGCTGGCCCAATTAAATATTGCGAGAAGTTTTTGAAAGATAGTGCCCTAAAGGTTGGAGAATCCCGGGACTTGCTCAAGATTTTATCTTGATAAAGATGAAGGTTATATATTAAGGCACAAAGCCTAGTATCCATCCTCTATGGCTAGGATTACGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGCTTTCACTGTTGGTGTTCTTTCTGATCTCTACACATTTCACTGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTTCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATACGAATTCTCCTATATCAATAAGAGACGTGTTTGGGCCCGCTTTGAAAACAGCCAGGAACTACTAGCACAAGATCCAATATTTGATAAGGTTCCATACCCGTAAGGGTTCCAAGCTTCAACCCACAGCTCGAGCATCTTGCTTATATATTGACTTTTCTTGAAAGGGTTCTTTCCAAATGAAAGAATTCATTATGACAGCGGTTCCGAAAAGACAGATTAGACTTGCCCGACCCGGGCATAAGCAGGAAGAAGACTCTGTCGGATTACAATACACAGAGAGAGTATCTATTGACAGTAGGCATCAAGGGGGTAAGCTTTTAAAGGATTTCAATTAGTGTCTACATATATAAGGAACAAACGAAGCAACATGTTATTGCAGTATATCTTTGTCGTATCATTCTATTGATTGATCAATCATTCAATACCAAAGTGATCCATGAAGTTGTATAGCCTATGCCACTCCAATACCAAATCAGTAGAGGTTTTGTAAATCTCACACTTATCCTATGTGATACACAAGTAATTAACCAACTACGAAGACTCCTGGACAAAAATGGACCTAATGTAGTGTAACAGCAGTATCTAAGCTTACTATCAACTATTTGCTATGTCTATGTGGATCCTTTGCTTCTATTGTGTGTTATGTTATTAGTTAAGCTCACGTTGATTTCTCAGAGATTTTGGGTGAGACAACTTTTCTCCCTGTAAATTTACCTAGTTTCATTTGGCACCTTCAGTTATCATATAATGCTCCTAACAAACAATTGCATTTGAGGTTACAAGGAAATAGAAAACATATCTTAGATGACATTCTCTCTATATTCTTCTACATCCTCTGTTGAAATAATTTATGATCTTGTCCAATATTGTATGCTTGTACGTCTATCTTAGCAAAAACAGTTCTTTGACACTCATCTTGTAAATATGTTGGGTGCCAGATGCCTGACGTTCACTCTCATACAACATTGTTGGCTTCACAATTATTCTGTTAGACTTGTCTTTTTTACTTACTTAGGTATCTTCATATCTTTCCTTCTATGTTTCTTTAGCCTTCCTATTGTTATTCTAGTTTTTCTCCTCTATTATCCTTTGGCTCTTTTAGGGTTATCTTTTGATTTTTGAGCCACTAGCCTTAGTTCTTGAACCTTCTGTGTGGAGAATCATACCTTTGTCTATTGGATCTTAAATAGCTCAACATTAATGCTGCTGGATTCTAGAAATTTTGTGGTTCTTACTAGAATTTTCAGCATTGGGATAGGATACCAGAATGGCTGTAAAGTTCCATAATTAAATTAGGGAGCCTGGTATGCCAGTCAAAGAGCAAAATTGCAGGACCCTCAGCAGTGATAACAAAATATGCGTAAGAGTTAAGCTGAATATTCAATTTCCGTTGTTGATACATCTAATCTCCAATGGACTAAGGATTCTTCATAGTGAATAGCTTAACAAAGTACTATTAACTACAAATTTCTAGTTATCTTACACTGCAAAATCAGATAATTATAGATAGAAGCAATGGTTAAGGGAAACATACTTGGTTTACTTTATCCAAAGAAAGGGGAACATACTTGGTTTGTGAAATCTCGTTCTAGAAATGGAGATATTATGAAGGGAGATGCCTCAGGATTCATCCTTATTAACTTTCCACTATTTGCTTTTAGAAACTTGGATGTGGAGGATTTTGAAGAGCATACATTTTCTAAGTTCTACTTTGGGTCTAGGTAATCTTGAAAATAGGAACTTGCTAAAATTGCTTTCAAGGCCACAATAGTACTAATCCTTATAGAACACTATGATTTTTATTTTTTATTTTGAGAATGAGAACACTAGGATTTTGAAGTGCCTTAGTATCCTCCTCCTACACTTTAGGTTCCTTTTTTCAAATAAAGGTGGTGTCAGGACAACTTGTGATTGTTCCACTGTGTACCTATTACATCCCACCAATGCGGCTTAGACAAATTGGACGATATCTTCTGCTCTTCATCTTTTTCAGCATTGTGGAATTCAATATTTGTTAGACACTTTGACTATCCAAATGACAGTGGGGGAAATACCCTATAAAGCTCATAGGCCATAGCTGGAAGATATTGCAGTAGTTCCTTGATATGATAATGATGAAAAGAAGAGAACAAAATGTTGTAGGTGCCCTCGTAGTTATCCTTAGGTAACATGAATGATTCGAGGAACTGACCTCTTAACTGGCACAAATATTCTTTGGTCGTTTTTGCATGTGTCATACTTGCCGCCATACATGCTGTCAGATATTTATTATGAAATTCAGTACTTCTCAGGATCATGTTGTTGGCTCCATTTGGTTAATCTGTGTGTTATTGTTTGAACAGCCTTGTTGCTTTAGATTTTTATGGTAGTACAGCATTGCAAATGGATTTGTTAATCCATTTGATTAGAATATTTGGCCTTATGATTAGTATCTGTGCTTCTTCGTTCTTTCGTTTCTTGTTGTAGTCCTTTTTGTTCCCTCAACTTATTAGTGCCAAAGCCCAAAAGTATATGAAACTCTCTCTCTTTCTGCTTCCCTCTCTTCTGCATGATCAGAAAAGAAACAGAAAACTAATTAGGATATTATTCAACAGTGTACTTTAGCTGAAATAAGCTGCTTTGGTATGTTTGTCACCAATTTTTGACATGAACTTGGCCATTGACGCAGGTCGCTCTACCTGTTAACTAATCATATCTGATGTTCCTAAATGATATTTTTAGCACATCTTTCTACAAGTTAAACAAAAAAAACACCTCTATCTCATCTATTTAACAATTTTCCGATTTCCCTCCAATTCCAGGTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTG----CTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTAC-GACAGTGCTTTAATGGAAATTTAATTTTATGTTACTACTCTTCCGTCCACTTTTATTCTGTTTACTGTAATAAAAAATTGCAAAACATATTTCACTTGTTAAATACTGTAATTATTTTCAGTTCATCTTGTAAACTACTTTATTACTTAAATGAATTATACGTATTAAATTATGTCATTTTTTCCCTAATCATATTATATATCAGGTATAAAAGAGAACTCTAGCC</genome_strand>
        <mrna_strand>AGAAGGCGATACAAGATGACCAAAAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAACTGCATAAGAATAGCTAGAGAAAGAGTGGAGAAGGCGCTTCAGTACTCATATAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGCCAACATGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTATGGCAATTTCATGCACGGGCTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCATGAGCCATACAGCTTCAAGGCCCTTGTGGACGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGGCTTGCTATTGTTCTTTGAATTAATTTCCTATGTTGTGCTTTCTTTGTGTACTCTTTTTCTTCTATTTTGGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAAT-T-TACCAATGGTATTGAAGTCTTCTGTTTACTGCAAGTGCTTAAATGGAAATTTAATATGCTTTAATT.........................................................................................................................................................................TTAAAAAAAAAAAAAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464198" ref_strand="+" ref_description="SGN-E464198 [cPRO-17-C16]">
      <seq>agaaggcgatacaagatgaacaaaaaggaagtgtttaagctagctaaagggtttcgaggaagagctaaaaactgcataagaatagctagagaaagagtggagaaggcgcttcagtactcatatagagaccgccgcaacaagaagagggatatgcgttctctctggattcaacgcatcaatgccggaactcgccaacatggggtgaattatggcaatttcatgcacgggctgatgaaggagaacgtacagctgaacaggaaagtcttgtcagaactgtcgatgcatgagccatacagcttcaaggcccttgtggacgtctctcgcagcgctttccctgggaataagaagtccatagtacctcccaagaaggaagggcttgctattgttctttgaaataatttcctatgttgtgctttctttgtgtactctttttcttctattttgggcataattttgtgctagcatttctgttagcaaatttaccaatgggattgaagacctctgtttactgccagcgcttaaatggaaatataatatgcttttattttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="47955" stop="17958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47665" g_stop="47465" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44150" g_stop="43809" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="546" r_length="345" r_score="0.880"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43808" i_stop="43640" i_length="169">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43639" g_stop="43620" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="566" r_length="20" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E464198" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47665" e_stop="47465"/>
          <exon e_start="44150" e_stop="43809"/>
          <exon e_start="43639" e_stop="43620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGGGTATGTATAAACCCCTTTTCTCATTTTTTGCAGTTTTTGATTTGTGGGGTTTTTCCCCTTTTCAATATTTTGTCGAATTTGAGTTTTGCTTGGTGTCTTGCTTTTTCTTTACTTTATGATGTGTGCTTAGTCATGGTTGTTGCAGCATGTTGAACCTTTATCATATTAGATGAGTAGTCTTGAAAAATGTAGCTGGCCCAATTAAATATTGCGAGAAGTTTTTGAAAGATAGTGCCCTAAAGGTTGGAGAATCCCGGGACTTGCTCAAGATTTTATCTTGATAAAGATGAAGGTTATATATTAAGGCACAAAGCCTAGTATCCATCCTCTATGGCTAGGATTACGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGCTTTCACTGTTGGTGTTCTTTCTGATCTCTACACATTTCACTGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTTCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATACGAATTCTCCTATATCAATAAGAGACGTGTTTGGGCCCGCTTTGAAAACAGCCAGGAACTACTAGCACAAGATCCAATATTTGATAAGGTTCCATACCCGTAAGGGTTCCAAGCTTCAACCCACAGCTCGAGCATCTTGCTTATATATTGACTTTTCTTGAAAGGGTTCTTTCCAAATGAAAGAATTCATTATGACAGCGGTTCCGAAAAGACAGATTAGACTTGCCCGACCCGGGCATAAGCAGGAAGAAGACTCTGTCGGATTACAATACACAGAGAGAGTATCTATTGACAGTAGGCATCAAGGGGGTAAGCTTTTAAAGGATTTCAATTAGTGTCTACATATATAAGGAACAAACGAAGCAACATGTTATTGCAGTATATCTTTGTCGTATCATTCTATTGATTGATCAATCATTCAATACCAAAGTGATCCATGAAGTTGTATAGCCTATGCCACTCCAATACCAAATCAGTAGAGGTTTTGTAAATCTCACACTTATCCTATGTGATACACAAGTAATTAACCAACTACGAAGACTCCTGGACAAAAATGGACCTAATGTAGTGTAACAGCAGTATCTAAGCTTACTATCAACTATTTGCTATGTCTATGTGGATCCTTTGCTTCTATTGTGTGTTATGTTATTAGTTAAGCTCACGTTGATTTCTCAGAGATTTTGGGTGAGACAACTTTTCTCCCTGTAAATTTACCTAGTTTCATTTGGCACCTTCAGTTATCATATAATGCTCCTAACAAACAATTGCATTTGAGGTTACAAGGAAATAGAAAACATATCTTAGATGACATTCTCTCTATATTCTTCTACATCCTCTGTTGAAATAATTTATGATCTTGTCCAATATTGTATGCTTGTACGTCTATCTTAGCAAAAACAGTTCTTTGACACTCATCTTGTAAATATGTTGGGTGCCAGATGCCTGACGTTCACTCTCATACAACATTGTTGGCTTCACAATTATTCTGTTAGACTTGTCTTTTTTACTTACTTAGGTATCTTCATATCTTTCCTTCTATGTTTCTTTAGCCTTCCTATTGTTATTCTAGTTTTTCTCCTCTATTATCCTTTGGCTCTTTTAGGGTTATCTTTTGATTTTTGAGCCACTAGCCTTAGTTCTTGAACCTTCTGTGTGGAGAATCATACCTTTGTCTATTGGATCTTAAATAGCTCAACATTAATGCTGCTGGATTCTAGAAATTTTGTGGTTCTTACTAGAATTTTCAGCATTGGGATAGGATACCAGAATGGCTGTAAAGTTCCATAATTAAATTAGGGAGCCTGGTATGCCAGTCAAAGAGCAAAATTGCAGGACCCTCAGCAGTGATAACAAAATATGCGTAAGAGTTAAGCTGAATATTCAATTTCCGTTGTTGATACATCTAATCTCCAATGGACTAAGGATTCTTCATAGTGAATAGCTTAACAAAGTACTATTAACTACAAATTTCTAGTTATCTTACACTGCAAAATCAGATAATTATAGATAGAAGCAATGGTTAAGGGAAACATACTTGGTTTACTTTATCCAAAGAAAGGGGAACATACTTGGTTTGTGAAATCTCGTTCTAGAAATGGAGATATTATGAAGGGAGATGCCTCAGGATTCATCCTTATTAACTTTCCACTATTTGCTTTTAGAAACTTGGATGTGGAGGATTTTGAAGAGCATACATTTTCTAAGTTCTACTTTGGGTCTAGGTAATCTTGAAAATAGGAACTTGCTAAAATTGCTTTCAAGGCCACAATAGTACTAATCCTTATAGAACACTATGATTTTTATTTTTTATTTTGAGAATGAGAACACTAGGATTTTGAAGTGCCTTAGTATCCTCCTCCTACACTTTAGGTTCCTTTTTTCAAATAAAGGTGGTGTCAGGACAACTTGTGATTGTTCCACTGTGTACCTATTACATCCCACCAATGCGGCTTAGACAAATTGGACGATATCTTCTGCTCTTCATCTTTTTCAGCATTGTGGAATTCAATATTTGTTAGACACTTTGACTATCCAAATGACAGTGGGGGAAATACCCTATAAAGCTCATAGGCCATAGCTGGAAGATATTGCAGTAGTTCCTTGATATGATAATGATGAAAAGAAGAGAACAAAATGTTGTAGGTGCCCTCGTAGTTATCCTTAGGTAACATGAATGATTCGAGGAACTGACCTCTTAACTGGCACAAATATTCTTTGGTCGTTTTTGCATGTGTCATACTTGCCGCCATACATGCTGTCAGATATTTATTATGAAATTCAGTACTTCTCAGGATCATGTTGTTGGCTCCATTTGGTTAATCTGTGTGTTATTGTTTGAACAGCCTTGTTGCTTTAGATTTTTATGGTAGTACAGCATTGCAAATGGATTTGTTAATCCATTTGATTAGAATATTTGGCCTTATGATTAGTATCTGTGCTTCTTCGTTCTTTCGTTTCTTGTTGTAGTCCTTTTTGTTCCCTCAACTTATTAGTGCCAAAGCCCAAAAGTATATGAAACTCTCTCTCTTTCTGCTTCCCTCTCTTCTGCATGATCAGAAAAGAAACAGAAAACTAATTAGGATATTATTCAACAGTGTACTTTAGCTGAAATAAGCTGCTTTGGTATGTTTGTCACCAATTTTTGACATGAACTTGGCCATTGACGCAGGTCGCTCTACCTGTTAACTAATCATATCTGATGTTCCTAAATGATATTTTTAGCACATCTTTCTACAAGTTAAACAAAAAAAACACCTCTATCTCATCTATTTAACAATTTTCCGATTTCCCTCCAATTCCAGGTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTG----CTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTAC-GACAGTGCTTTAATGGAAATTTAATTTTATGTTACTACTCTTCCGTCCACTTTTATTCTGTTTACTGTAATAAAAAATTGCAAAACATATTTCACTTGTTAAATACTGTAATTATTTTCAGTTCATCTTGTAAACTACTTTATTACTTAAATGAATTATACGTATTAAATTATGTCATTTTTTCCCTAATCATATTATATATCAGGTATAAAAGAGAACTCTAGC</genome_strand>
        <mrna_strand>AGAAGGCGATACAAGATGAACAAAAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAACTGCATAAGAATAGCTAGAGAAAGAGTGGAGAAGGCGCTTCAGTACTCATATAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGCCAACATGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTATGGCAATTTCATGCACGGGCTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCATGAGCCATACAGCTTCAAGGCCCTTGTGGACGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCCAAGAAGGAAGGGCTTGCTATTGTTCTTTGAAATAATTTCCTATGTTGTGCTTTCTTTGTGTACTCTTTTTCTTCTATTTTGGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAAT-T-TACCAATGGGATTGAAGACCTCTGTTTACTGCCAGCGCTTAAATGGAAATATAATATGCTTTTATT.........................................................................................................................................................................TTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720888" ref_strand="+" ref_description="SGN-E720888 [FC12AF07]">
      <seq>ttggagaagcagagaagaaggctcaagaagatgaacaagaaggaagtgtttaagctagctaaagggtttcgaggaagagctaaaaattgcataagaatagcaagagaaagagttgagaaggcgcttcagtactcatacagagaccgccgcaacaagaagagggatatgcgttctctctggattcaacgcatcaatgccggaactcgtcaacacggggtgaattatggcaatttcatgcacgggttgatgaaggagaacgtacagctgaacaggaaagtcttgtcagaactgtcaatgcacgaaccatacagcttcaaggccctcgtggatgtctctcgcagcgctttccctgggaataagaagtccatagtacctccaaagaaggaaggacttgctgttgttctttgaattagtttcctgtgttgtgctttgtgtactcttcttcttcttcgttaggcataattttgtgctagcatttctgttagcaagtttctaccaatggtattgaagtcttctgtttacgacagtgctttaatggaaatttaattttatgttactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="47981" stop="43508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47681" g_stop="47465" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44150" g_stop="43809" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="558" r_length="342" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43808" i_stop="43640" i_length="169">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43639" g_stop="43627" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="571" r_length="13" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E720888" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47681" e_stop="47465"/>
          <exon e_start="44150" e_stop="43809"/>
          <exon e_start="43639" e_stop="43627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGAGAAGCAGAGAAGAAGGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGGGTATGTATAAACCCCTTTTCTCATTTTTTGCAGTTTTTGATTTGTGGGGTTTTTCCCCTTTTCAATATTTTGTCGAATTTGAGTTTTGCTTGGTGTCTTGCTTTTTCTTTACTTTATGATGTGTGCTTAGTCATGGTTGTTGCAGCATGTTGAACCTTTATCATATTAGATGAGTAGTCTTGAAAAATGTAGCTGGCCCAATTAAATATTGCGAGAAGTTTTTGAAAGATAGTGCCCTAAAGGTTGGAGAATCCCGGGACTTGCTCAAGATTTTATCTTGATAAAGATGAAGGTTATATATTAAGGCACAAAGCCTAGTATCCATCCTCTATGGCTAGGATTACGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGCTTTCACTGTTGGTGTTCTTTCTGATCTCTACACATTTCACTGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTTCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATACGAATTCTCCTATATCAATAAGAGACGTGTTTGGGCCCGCTTTGAAAACAGCCAGGAACTACTAGCACAAGATCCAATATTTGATAAGGTTCCATACCCGTAAGGGTTCCAAGCTTCAACCCACAGCTCGAGCATCTTGCTTATATATTGACTTTTCTTGAAAGGGTTCTTTCCAAATGAAAGAATTCATTATGACAGCGGTTCCGAAAAGACAGATTAGACTTGCCCGACCCGGGCATAAGCAGGAAGAAGACTCTGTCGGATTACAATACACAGAGAGAGTATCTATTGACAGTAGGCATCAAGGGGGTAAGCTTTTAAAGGATTTCAATTAGTGTCTACATATATAAGGAACAAACGAAGCAACATGTTATTGCAGTATATCTTTGTCGTATCATTCTATTGATTGATCAATCATTCAATACCAAAGTGATCCATGAAGTTGTATAGCCTATGCCACTCCAATACCAAATCAGTAGAGGTTTTGTAAATCTCACACTTATCCTATGTGATACACAAGTAATTAACCAACTACGAAGACTCCTGGACAAAAATGGACCTAATGTAGTGTAACAGCAGTATCTAAGCTTACTATCAACTATTTGCTATGTCTATGTGGATCCTTTGCTTCTATTGTGTGTTATGTTATTAGTTAAGCTCACGTTGATTTCTCAGAGATTTTGGGTGAGACAACTTTTCTCCCTGTAAATTTACCTAGTTTCATTTGGCACCTTCAGTTATCATATAATGCTCCTAACAAACAATTGCATTTGAGGTTACAAGGAAATAGAAAACATATCTTAGATGACATTCTCTCTATATTCTTCTACATCCTCTGTTGAAATAATTTATGATCTTGTCCAATATTGTATGCTTGTACGTCTATCTTAGCAAAAACAGTTCTTTGACACTCATCTTGTAAATATGTTGGGTGCCAGATGCCTGACGTTCACTCTCATACAACATTGTTGGCTTCACAATTATTCTGTTAGACTTGTCTTTTTTACTTACTTAGGTATCTTCATATCTTTCCTTCTATGTTTCTTTAGCCTTCCTATTGTTATTCTAGTTTTTCTCCTCTATTATCCTTTGGCTCTTTTAGGGTTATCTTTTGATTTTTGAGCCACTAGCCTTAGTTCTTGAACCTTCTGTGTGGAGAATCATACCTTTGTCTATTGGATCTTAAATAGCTCAACATTAATGCTGCTGGATTCTAGAAATTTTGTGGTTCTTACTAGAATTTTCAGCATTGGGATAGGATACCAGAATGGCTGTAAAGTTCCATAATTAAATTAGGGAGCCTGGTATGCCAGTCAAAGAGCAAAATTGCAGGACCCTCAGCAGTGATAACAAAATATGCGTAAGAGTTAAGCTGAATATTCAATTTCCGTTGTTGATACATCTAATCTCCAATGGACTAAGGATTCTTCATAGTGAATAGCTTAACAAAGTACTATTAACTACAAATTTCTAGTTATCTTACACTGCAAAATCAGATAATTATAGATAGAAGCAATGGTTAAGGGAAACATACTTGGTTTACTTTATCCAAAGAAAGGGGAACATACTTGGTTTGTGAAATCTCGTTCTAGAAATGGAGATATTATGAAGGGAGATGCCTCAGGATTCATCCTTATTAACTTTCCACTATTTGCTTTTAGAAACTTGGATGTGGAGGATTTTGAAGAGCATACATTTTCTAAGTTCTACTTTGGGTCTAGGTAATCTTGAAAATAGGAACTTGCTAAAATTGCTTTCAAGGCCACAATAGTACTAATCCTTATAGAACACTATGATTTTTATTTTTTATTTTGAGAATGAGAACACTAGGATTTTGAAGTGCCTTAGTATCCTCCTCCTACACTTTAGGTTCCTTTTTTCAAATAAAGGTGGTGTCAGGACAACTTGTGATTGTTCCACTGTGTACCTATTACATCCCACCAATGCGGCTTAGACAAATTGGACGATATCTTCTGCTCTTCATCTTTTTCAGCATTGTGGAATTCAATATTTGTTAGACACTTTGACTATCCAAATGACAGTGGGGGAAATACCCTATAAAGCTCATAGGCCATAGCTGGAAGATATTGCAGTAGTTCCTTGATATGATAATGATGAAAAGAAGAGAACAAAATGTTGTAGGTGCCCTCGTAGTTATCCTTAGGTAACATGAATGATTCGAGGAACTGACCTCTTAACTGGCACAAATATTCTTTGGTCGTTTTTGCATGTGTCATACTTGCCGCCATACATGCTGTCAGATATTTATTATGAAATTCAGTACTTCTCAGGATCATGTTGTTGGCTCCATTTGGTTAATCTGTGTGTTATTGTTTGAACAGCCTTGTTGCTTTAGATTTTTATGGTAGTACAGCATTGCAAATGGATTTGTTAATCCATTTGATTAGAATATTTGGCCTTATGATTAGTATCTGTGCTTCTTCGTTCTTTCGTTTCTTGTTGTAGTCCTTTTTGTTCCCTCAACTTATTAGTGCCAAAGCCCAAAAGTATATGAAACTCTCTCTCTTTCTGCTTCCCTCTCTTCTGCATGATCAGAAAAGAAACAGAAAACTAATTAGGATATTATTCAACAGTGTACTTTAGCTGAAATAAGCTGCTTTGGTATGTTTGTCACCAATTTTTGACATGAACTTGGCCATTGACGCAGGTCGCTCTACCTGTTAACTAATCATATCTGATGTTCCTAAATGATATTTTTAGCACATCTTTCTACAAGTTAAACAAAAAAAACACCTCTATCTCATCTATTTAACAATTTTCCGATTTCCCTCCAATTCCAGGTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTAATTTTATGTTACTACTCTTCCGTCCACTTTTATTCTGTTTACTGTAATAAAAAATTGCAAAACATATTTCACTTGTTAAATACTGTAATTATTTTCAGTTCATCTTGTAAACTACTTTATTACTTAAATGAATTATACGTATTAAATTATGTCATTTTTTCCCTAATCATATTATATATCAGGTATAAAAGAGAA</genome_strand>
        <mrna_strand>TTG-GAGAAGCAGAGAAGAAGGCTCAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCAATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTTTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTAATTTTATGTTACT.........................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560979" ref_strand="+" ref_description="SGN-E560979 [20717]">
      <seq>gaagcgctaccagatgaacaaaaaggaagtgtttaagctagctaaagggttcgaggaagagctaaaaactgcataagaatagctagagaaagagtggagaagggcgcttcagtactcatatagagaccgccgcaacaagaagagggatatgcgttctctctggattcaacgcatcaatgccggaactcgccaacatggggtgaattatggcaatttcatgcacgggctgatgaaggagaacgtacagctgaacaggaaagtgttgtcagaactgtcgatgcacgaaccatacagcttcaaggcccttgtggacgtctctcgcagcgctttccctgggaataagaagtccatagtacctccaaagaaggaagggcttgctattgttctttgaattaatttcctatgttgtgctttgtgtactctttttcttctattttgggcataattttgtgctagcatttctgttagcaaatttctaccgatagtattgaagtctcctgtttactgcaagtgcttaaatggaaatttaatatgctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="47964" stop="43511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47664" g_stop="47465" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44150" g_stop="43815" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="536" r_length="337" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43814" i_stop="43640" i_length="175">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43639" g_stop="43628" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="548" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E560979" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47664" e_stop="47465"/>
          <exon e_start="44150" e_stop="43815"/>
          <exon e_start="43639" e_stop="43628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAA-GGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGGGTATGTATAAACCCCTTTTCTCATTTTTTGCAGTTTTTGATTTGTGGGGTTTTTCCCCTTTTCAATATTTTGTCGAATTTGAGTTTTGCTTGGTGTCTTGCTTTTTCTTTACTTTATGATGTGTGCTTAGTCATGGTTGTTGCAGCATGTTGAACCTTTATCATATTAGATGAGTAGTCTTGAAAAATGTAGCTGGCCCAATTAAATATTGCGAGAAGTTTTTGAAAGATAGTGCCCTAAAGGTTGGAGAATCCCGGGACTTGCTCAAGATTTTATCTTGATAAAGATGAAGGTTATATATTAAGGCACAAAGCCTAGTATCCATCCTCTATGGCTAGGATTACGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGCTTTCACTGTTGGTGTTCTTTCTGATCTCTACACATTTCACTGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTTCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATACGAATTCTCCTATATCAATAAGAGACGTGTTTGGGCCCGCTTTGAAAACAGCCAGGAACTACTAGCACAAGATCCAATATTTGATAAGGTTCCATACCCGTAAGGGTTCCAAGCTTCAACCCACAGCTCGAGCATCTTGCTTATATATTGACTTTTCTTGAAAGGGTTCTTTCCAAATGAAAGAATTCATTATGACAGCGGTTCCGAAAAGACAGATTAGACTTGCCCGACCCGGGCATAAGCAGGAAGAAGACTCTGTCGGATTACAATACACAGAGAGAGTATCTATTGACAGTAGGCATCAAGGGGGTAAGCTTTTAAAGGATTTCAATTAGTGTCTACATATATAAGGAACAAACGAAGCAACATGTTATTGCAGTATATCTTTGTCGTATCATTCTATTGATTGATCAATCATTCAATACCAAAGTGATCCATGAAGTTGTATAGCCTATGCCACTCCAATACCAAATCAGTAGAGGTTTTGTAAATCTCACACTTATCCTATGTGATACACAAGTAATTAACCAACTACGAAGACTCCTGGACAAAAATGGACCTAATGTAGTGTAACAGCAGTATCTAAGCTTACTATCAACTATTTGCTATGTCTATGTGGATCCTTTGCTTCTATTGTGTGTTATGTTATTAGTTAAGCTCACGTTGATTTCTCAGAGATTTTGGGTGAGACAACTTTTCTCCCTGTAAATTTACCTAGTTTCATTTGGCACCTTCAGTTATCATATAATGCTCCTAACAAACAATTGCATTTGAGGTTACAAGGAAATAGAAAACATATCTTAGATGACATTCTCTCTATATTCTTCTACATCCTCTGTTGAAATAATTTATGATCTTGTCCAATATTGTATGCTTGTACGTCTATCTTAGCAAAAACAGTTCTTTGACACTCATCTTGTAAATATGTTGGGTGCCAGATGCCTGACGTTCACTCTCATACAACATTGTTGGCTTCACAATTATTCTGTTAGACTTGTCTTTTTTACTTACTTAGGTATCTTCATATCTTTCCTTCTATGTTTCTTTAGCCTTCCTATTGTTATTCTAGTTTTTCTCCTCTATTATCCTTTGGCTCTTTTAGGGTTATCTTTTGATTTTTGAGCCACTAGCCTTAGTTCTTGAACCTTCTGTGTGGAGAATCATACCTTTGTCTATTGGATCTTAAATAGCTCAACATTAATGCTGCTGGATTCTAGAAATTTTGTGGTTCTTACTAGAATTTTCAGCATTGGGATAGGATACCAGAATGGCTGTAAAGTTCCATAATTAAATTAGGGAGCCTGGTATGCCAGTCAAAGAGCAAAATTGCAGGACCCTCAGCAGTGATAACAAAATATGCGTAAGAGTTAAGCTGAATATTCAATTTCCGTTGTTGATACATCTAATCTCCAATGGACTAAGGATTCTTCATAGTGAATAGCTTAACAAAGTACTATTAACTACAAATTTCTAGTTATCTTACACTGCAAAATCAGATAATTATAGATAGAAGCAATGGTTAAGGGAAACATACTTGGTTTACTTTATCCAAAGAAAGGGGAACATACTTGGTTTGTGAAATCTCGTTCTAGAAATGGAGATATTATGAAGGGAGATGCCTCAGGATTCATCCTTATTAACTTTCCACTATTTGCTTTTAGAAACTTGGATGTGGAGGATTTTGAAGAGCATACATTTTCTAAGTTCTACTTTGGGTCTAGGTAATCTTGAAAATAGGAACTTGCTAAAATTGCTTTCAAGGCCACAATAGTACTAATCCTTATAGAACACTATGATTTTTATTTTTTATTTTGAGAATGAGAACACTAGGATTTTGAAGTGCCTTAGTATCCTCCTCCTACACTTTAGGTTCCTTTTTTCAAATAAAGGTGGTGTCAGGACAACTTGTGATTGTTCCACTGTGTACCTATTACATCCCACCAATGCGGCTTAGACAAATTGGACGATATCTTCTGCTCTTCATCTTTTTCAGCATTGTGGAATTCAATATTTGTTAGACACTTTGACTATCCAAATGACAGTGGGGGAAATACCCTATAAAGCTCATAGGCCATAGCTGGAAGATATTGCAGTAGTTCCTTGATATGATAATGATGAAAAGAAGAGAACAAAATGTTGTAGGTGCCCTCGTAGTTATCCTTAGGTAACATGAATGATTCGAGGAACTGACCTCTTAACTGGCACAAATATTCTTTGGTCGTTTTTGCATGTGTCATACTTGCCGCCATACATGCTGTCAGATATTTATTATGAAATTCAGTACTTCTCAGGATCATGTTGTTGGCTCCATTTGGTTAATCTGTGTGTTATTGTTTGAACAGCCTTGTTGCTTTAGATTTTTATGGTAGTACAGCATTGCAAATGGATTTGTTAATCCATTTGATTAGAATATTTGGCCTTATGATTAGTATCTGTGCTTCTTCGTTCTTTCGTTTCTTGTTGTAGTCCTTTTTGTTCCCTCAACTTATTAGTGCCAAAGCCCAAAAGTATATGAAACTCTCTCTCTTTCTGCTTCCCTCTCTTCTGCATGATCAGAAAAGAAACAGAAAACTAATTAGGATATTATTCAACAGTGTACTTTAGCTGAAATAAGCTGCTTTGGTATGTTTGTCACCAATTTTTGACATGAACTTGGCCATTGACGCAGGTCGCTCTACCTGTTAACTAATCATATCTGATGTTCCTAAATGATATTTTTAGCACATCTTTCTACAAGTTAAACAAAAAAAACACCTCTATCTCATCTATTTAACAATTTTCCGATTTCCCTCCAATTCCAGGTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTAC-GACAGTGCTTTAATGGAAATTTAATTTTATGTTACTACTCTTCCGTCCACTTTTATTCTGTTTACTGTAATAAAAAATTGCAAAACATATTTCACTTGTTAAATACTGTAATTATTTTCAGTTCATCTTGTAAACTACTTTATTACTTAAATGAATTATACGTATTAAATTATGTCATTTTTTCCCTAATCATATTATATATCAGGTATAAAAGAGA</genome_strand>
        <mrna_strand>GAAG-CGCTACCAGATGAACAAAAAGGAAGTGTTTAAGCTAGCTAAAGGG-TTCGAGGAAGAGCTAAAAACTGCATAAGAATAGCTAGAGAAAGAGTGGAGAAGGGCGCTTCAGTACTCATATAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGCCAACATGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTATGGCAATTTCATGCACGGGCTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTGTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTTGTGGACGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGGCTTGCTATTGTTCTTTGAATTAATTTCCTATGTTGTGCTTTGTGTACTCTTTTTCTTCTATTTTGGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAATTTCTACCGATAGTATTGAAGTCTCCTGTTTACTGCAAGTGCTTAAATGGAAATTTAATATGCT...............................................................................................................................................................................TTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553039" ref_strand="+" ref_description="SGN-E553039 [cTSB-5-N16]">
      <seq>gagaagaaggcacaagaagatgaacaagaaggaagtgtttaagctagctaaagggtttcgaggaagagctaaaaattgcataagaatagcaagagaaagagttgagaaggcgcttcagtactcatatagagaccgccgcaacaagaagagggatatgcgttctctctggattcaacgcatcaatgccggaactcgtcaacacggggtgaattatggcaatttcatgcacgggttgatgaaggagaacgtacagctgaacaggaaagtcttgtcagaactgtcgatgcacgaaccatacagcttcaaggccctcgtggatgtctctcgcagcgctttccctgggaataagaagtccatagtacctccaaagaaggaaggacttgctgttgttctttgaattagtttcctgtgttgtgctttgtgtactcttcttcttcttcgttaggcataattttgtgctagcatttctgttagcaagtctctaccaatggtattgaagtcttctgtttacgacagtgctttaatggaaatttaatatgctttaattttatgttactactcttccgtccacttttattctgtttactgtaataaaaaattgcaaaacataaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="47969" stop="17958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47669" g_stop="47465" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44150" g_stop="43730" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="636" r_length="431" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E553039" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47669" e_stop="47465"/>
          <exon e_start="44150" e_stop="43730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAAGGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGGGTATGTATAAACCCCTTTTCTCATTTTTTGCAGTTTTTGATTTGTGGGGTTTTTCCCCTTTTCAATATTTTGTCGAATTTGAGTTTTGCTTGGTGTCTTGCTTTTTCTTTACTTTATGATGTGTGCTTAGTCATGGTTGTTGCAGCATGTTGAACCTTTATCATATTAGATGAGTAGTCTTGAAAAATGTAGCTGGCCCAATTAAATATTGCGAGAAGTTTTTGAAAGATAGTGCCCTAAAGGTTGGAGAATCCCGGGACTTGCTCAAGATTTTATCTTGATAAAGATGAAGGTTATATATTAAGGCACAAAGCCTAGTATCCATCCTCTATGGCTAGGATTACGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGCTTTCACTGTTGGTGTTCTTTCTGATCTCTACACATTTCACTGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTTCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATACGAATTCTCCTATATCAATAAGAGACGTGTTTGGGCCCGCTTTGAAAACAGCCAGGAACTACTAGCACAAGATCCAATATTTGATAAGGTTCCATACCCGTAAGGGTTCCAAGCTTCAACCCACAGCTCGAGCATCTTGCTTATATATTGACTTTTCTTGAAAGGGTTCTTTCCAAATGAAAGAATTCATTATGACAGCGGTTCCGAAAAGACAGATTAGACTTGCCCGACCCGGGCATAAGCAGGAAGAAGACTCTGTCGGATTACAATACACAGAGAGAGTATCTATTGACAGTAGGCATCAAGGGGGTAAGCTTTTAAAGGATTTCAATTAGTGTCTACATATATAAGGAACAAACGAAGCAACATGTTATTGCAGTATATCTTTGTCGTATCATTCTATTGATTGATCAATCATTCAATACCAAAGTGATCCATGAAGTTGTATAGCCTATGCCACTCCAATACCAAATCAGTAGAGGTTTTGTAAATCTCACACTTATCCTATGTGATACACAAGTAATTAACCAACTACGAAGACTCCTGGACAAAAATGGACCTAATGTAGTGTAACAGCAGTATCTAAGCTTACTATCAACTATTTGCTATGTCTATGTGGATCCTTTGCTTCTATTGTGTGTTATGTTATTAGTTAAGCTCACGTTGATTTCTCAGAGATTTTGGGTGAGACAACTTTTCTCCCTGTAAATTTACCTAGTTTCATTTGGCACCTTCAGTTATCATATAATGCTCCTAACAAACAATTGCATTTGAGGTTACAAGGAAATAGAAAACATATCTTAGATGACATTCTCTCTATATTCTTCTACATCCTCTGTTGAAATAATTTATGATCTTGTCCAATATTGTATGCTTGTACGTCTATCTTAGCAAAAACAGTTCTTTGACACTCATCTTGTAAATATGTTGGGTGCCAGATGCCTGACGTTCACTCTCATACAACATTGTTGGCTTCACAATTATTCTGTTAGACTTGTCTTTTTTACTTACTTAGGTATCTTCATATCTTTCCTTCTATGTTTCTTTAGCCTTCCTATTGTTATTCTAGTTTTTCTCCTCTATTATCCTTTGGCTCTTTTAGGGTTATCTTTTGATTTTTGAGCCACTAGCCTTAGTTCTTGAACCTTCTGTGTGGAGAATCATACCTTTGTCTATTGGATCTTAAATAGCTCAACATTAATGCTGCTGGATTCTAGAAATTTTGTGGTTCTTACTAGAATTTTCAGCATTGGGATAGGATACCAGAATGGCTGTAAAGTTCCATAATTAAATTAGGGAGCCTGGTATGCCAGTCAAAGAGCAAAATTGCAGGACCCTCAGCAGTGATAACAAAATATGCGTAAGAGTTAAGCTGAATATTCAATTTCCGTTGTTGATACATCTAATCTCCAATGGACTAAGGATTCTTCATAGTGAATAGCTTAACAAAGTACTATTAACTACAAATTTCTAGTTATCTTACACTGCAAAATCAGATAATTATAGATAGAAGCAATGGTTAAGGGAAACATACTTGGTTTACTTTATCCAAAGAAAGGGGAACATACTTGGTTTGTGAAATCTCGTTCTAGAAATGGAGATATTATGAAGGGAGATGCCTCAGGATTCATCCTTATTAACTTTCCACTATTTGCTTTTAGAAACTTGGATGTGGAGGATTTTGAAGAGCATACATTTTCTAAGTTCTACTTTGGGTCTAGGTAATCTTGAAAATAGGAACTTGCTAAAATTGCTTTCAAGGCCACAATAGTACTAATCCTTATAGAACACTATGATTTTTATTTTTTATTTTGAGAATGAGAACACTAGGATTTTGAAGTGCCTTAGTATCCTCCTCCTACACTTTAGGTTCCTTTTTTCAAATAAAGGTGGTGTCAGGACAACTTGTGATTGTTCCACTGTGTACCTATTACATCCCACCAATGCGGCTTAGACAAATTGGACGATATCTTCTGCTCTTCATCTTTTTCAGCATTGTGGAATTCAATATTTGTTAGACACTTTGACTATCCAAATGACAGTGGGGGAAATACCCTATAAAGCTCATAGGCCATAGCTGGAAGATATTGCAGTAGTTCCTTGATATGATAATGATGAAAAGAAGAGAACAAAATGTTGTAGGTGCCCTCGTAGTTATCCTTAGGTAACATGAATGATTCGAGGAACTGACCTCTTAACTGGCACAAATATTCTTTGGTCGTTTTTGCATGTGTCATACTTGCCGCCATACATGCTGTCAGATATTTATTATGAAATTCAGTACTTCTCAGGATCATGTTGTTGGCTCCATTTGGTTAATCTGTGTGTTATTGTTTGAACAGCCTTGTTGCTTTAGATTTTTATGGTAGTACAGCATTGCAAATGGATTTGTTAATCCATTTGATTAGAATATTTGGCCTTATGATTAGTATCTGTGCTTCTTCGTTCTTTCGTTTCTTGTTGTAGTCCTTTTTGTTCCCTCAACTTATTAGTGCCAAAGCCCAAAAGTATATGAAACTCTCTCTCTTTCTGCTTCCCTCTCTTCTGCATGATCAGAAAAGAAACAGAAAACTAATTAGGATATTATTCAACAGTGTACTTTAGCTGAAATAAGCTGCTTTGGTATGTTTGTCACCAATTTTTGACATGAACTTGGCCATTGACGCAGGTCGCTCTACCTGTTAACTAATCATATCTGATGTTCCTAAATGATATTTTTAGCACATCTTTCTACAAGTTAAACAAAAAAAACACCTCTATCTCATCTATTTAACAATTTTCCGATTTCCCTCCAATTCCAGGTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGG------AA-A---TTTAATTTTATGTTACTACTCTTCCGTCCACTTTTATTCTGTTTACTGTAATAAAAAATTGCAAAACATATTTCACTTGTTAAATACTGTAATTAT</genome_strand>
        <mrna_strand>GAGAAGAAGGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATATAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTAATATGCTTTAATTTTATGTTACTACTCTTCCGTCCACTTTTATTCTGTTTACTGTAATAAAAAATTGCAAAACATAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721145" ref_strand="+" ref_description="SGN-E721145 [FC12DF07]">
      <seq>gggcgattggcggccaaatcggccgaattggagaagcagagaagaaggcacaagaagatgaacaagaaggaagtgtttaagctagctaaagggtttcgaggaagagctaaaaattgcataagaatagcaagagaaagagttgagaaggcgcttcagtactcatacagagaccgccgcaacaagaagagggatatgcgttctctctggattcaacgcatcaatgccggaactcgtcaacacggggtgaattatggcaatttcatgcacgggttgatgaaggagaacgtacagctgaacaggaaagtcttgtcagaactgtcaatgcacgaaccatacagcttcaaggccctcgtggatgtctctcgcagcgctttccctgggaataagaagtccatagtacctccaaagaaggaaggacttgctgttgttctttgaattagtttcctgtgttgtgctttgtgtactcttcttcttcttcgttaggcataattttgtgctagcatttctgttagcaagtttctaccaatggtattgaagtcttctgtttacgacagtgctttaatggaaatttaattttatgttactaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="47984" stop="17958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47678" g_stop="47465" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="243" r_length="214" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44150" g_stop="43756" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="638" r_length="395" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E721145" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47678" e_stop="47465"/>
          <exon e_start="44150" e_stop="43756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGCAGAGAAGAAGGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGGGTATGTATAAACCCCTTTTCTCATTTTTTGCAGTTTTTGATTTGTGGGGTTTTTCCCCTTTTCAATATTTTGTCGAATTTGAGTTTTGCTTGGTGTCTTGCTTTTTCTTTACTTTATGATGTGTGCTTAGTCATGGTTGTTGCAGCATGTTGAACCTTTATCATATTAGATGAGTAGTCTTGAAAAATGTAGCTGGCCCAATTAAATATTGCGAGAAGTTTTTGAAAGATAGTGCCCTAAAGGTTGGAGAATCCCGGGACTTGCTCAAGATTTTATCTTGATAAAGATGAAGGTTATATATTAAGGCACAAAGCCTAGTATCCATCCTCTATGGCTAGGATTACGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGCTTTCACTGTTGGTGTTCTTTCTGATCTCTACACATTTCACTGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTTCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATACGAATTCTCCTATATCAATAAGAGACGTGTTTGGGCCCGCTTTGAAAACAGCCAGGAACTACTAGCACAAGATCCAATATTTGATAAGGTTCCATACCCGTAAGGGTTCCAAGCTTCAACCCACAGCTCGAGCATCTTGCTTATATATTGACTTTTCTTGAAAGGGTTCTTTCCAAATGAAAGAATTCATTATGACAGCGGTTCCGAAAAGACAGATTAGACTTGCCCGACCCGGGCATAAGCAGGAAGAAGACTCTGTCGGATTACAATACACAGAGAGAGTATCTATTGACAGTAGGCATCAAGGGGGTAAGCTTTTAAAGGATTTCAATTAGTGTCTACATATATAAGGAACAAACGAAGCAACATGTTATTGCAGTATATCTTTGTCGTATCATTCTATTGATTGATCAATCATTCAATACCAAAGTGATCCATGAAGTTGTATAGCCTATGCCACTCCAATACCAAATCAGTAGAGGTTTTGTAAATCTCACACTTATCCTATGTGATACACAAGTAATTAACCAACTACGAAGACTCCTGGACAAAAATGGACCTAATGTAGTGTAACAGCAGTATCTAAGCTTACTATCAACTATTTGCTATGTCTATGTGGATCCTTTGCTTCTATTGTGTGTTATGTTATTAGTTAAGCTCACGTTGATTTCTCAGAGATTTTGGGTGAGACAACTTTTCTCCCTGTAAATTTACCTAGTTTCATTTGGCACCTTCAGTTATCATATAATGCTCCTAACAAACAATTGCATTTGAGGTTACAAGGAAATAGAAAACATATCTTAGATGACATTCTCTCTATATTCTTCTACATCCTCTGTTGAAATAATTTATGATCTTGTCCAATATTGTATGCTTGTACGTCTATCTTAGCAAAAACAGTTCTTTGACACTCATCTTGTAAATATGTTGGGTGCCAGATGCCTGACGTTCACTCTCATACAACATTGTTGGCTTCACAATTATTCTGTTAGACTTGTCTTTTTTACTTACTTAGGTATCTTCATATCTTTCCTTCTATGTTTCTTTAGCCTTCCTATTGTTATTCTAGTTTTTCTCCTCTATTATCCTTTGGCTCTTTTAGGGTTATCTTTTGATTTTTGAGCCACTAGCCTTAGTTCTTGAACCTTCTGTGTGGAGAATCATACCTTTGTCTATTGGATCTTAAATAGCTCAACATTAATGCTGCTGGATTCTAGAAATTTTGTGGTTCTTACTAGAATTTTCAGCATTGGGATAGGATACCAGAATGGCTGTAAAGTTCCATAATTAAATTAGGGAGCCTGGTATGCCAGTCAAAGAGCAAAATTGCAGGACCCTCAGCAGTGATAACAAAATATGCGTAAGAGTTAAGCTGAATATTCAATTTCCGTTGTTGATACATCTAATCTCCAATGGACTAAGGATTCTTCATAGTGAATAGCTTAACAAAGTACTATTAACTACAAATTTCTAGTTATCTTACACTGCAAAATCAGATAATTATAGATAGAAGCAATGGTTAAGGGAAACATACTTGGTTTACTTTATCCAAAGAAAGGGGAACATACTTGGTTTGTGAAATCTCGTTCTAGAAATGGAGATATTATGAAGGGAGATGCCTCAGGATTCATCCTTATTAACTTTCCACTATTTGCTTTTAGAAACTTGGATGTGGAGGATTTTGAAGAGCATACATTTTCTAAGTTCTACTTTGGGTCTAGGTAATCTTGAAAATAGGAACTTGCTAAAATTGCTTTCAAGGCCACAATAGTACTAATCCTTATAGAACACTATGATTTTTATTTTTTATTTTGAGAATGAGAACACTAGGATTTTGAAGTGCCTTAGTATCCTCCTCCTACACTTTAGGTTCCTTTTTTCAAATAAAGGTGGTGTCAGGACAACTTGTGATTGTTCCACTGTGTACCTATTACATCCCACCAATGCGGCTTAGACAAATTGGACGATATCTTCTGCTCTTCATCTTTTTCAGCATTGTGGAATTCAATATTTGTTAGACACTTTGACTATCCAAATGACAGTGGGGGAAATACCCTATAAAGCTCATAGGCCATAGCTGGAAGATATTGCAGTAGTTCCTTGATATGATAATGATGAAAAGAAGAGAACAAAATGTTGTAGGTGCCCTCGTAGTTATCCTTAGGTAACATGAATGATTCGAGGAACTGACCTCTTAACTGGCACAAATATTCTTTGGTCGTTTTTGCATGTGTCATACTTGCCGCCATACATGCTGTCAGATATTTATTATGAAATTCAGTACTTCTCAGGATCATGTTGTTGGCTCCATTTGGTTAATCTGTGTGTTATTGTTTGAACAGCCTTGTTGCTTTAGATTTTTATGGTAGTACAGCATTGCAAATGGATTTGTTAATCCATTTGATTAGAATATTTGGCCTTATGATTAGTATCTGTGCTTCTTCGTTCTTTCGTTTCTTGTTGTAGTCCTTTTTGTTCCCTCAACTTATTAGTGCCAAAGCCCAAAAGTATATGAAACTCTCTCTCTTTCTGCTTCCCTCTCTTCTGCATGATCAGAAAAGAAACAGAAAACTAATTAGGATATTATTCAACAGTGTACTTTAGCTGAAATAAGCTGCTTTGGTATGTTTGTCACCAATTTTTGACATGAACTTGGCCATTGACGCAGGTCGCTCTACCTGTTAACTAATCATATCTGATGTTCCTAAATGATATTTTTAGCACATCTTTCTACAAGTTAAACAAAAAAAACACCTCTATCTCATCTATTTAACAATTTTCCGATTTCCCTCCAATTCCAGGTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTAATTTTATGTTACTACTCTTCCGTCCACTTTTATTCTGTTTACTGTAATAAAAAATTGCAAAACATA</genome_strand>
        <mrna_strand>GGAGAAGCAGAGAAGAAGGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCAATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTTTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTAATTTTATGTTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545194" ref_strand="+" ref_description="SGN-E545194 [TUS-67-O17](-)">
      <seq>atgaacaagaaggaagtgtttaagctagctaaagggtttcgaggaagagctaaaaattgcataagaatagcaagagaaagagttgagaaggcgcttcagtactcatatagagaccgccgcaacaagaagagggatatgcgttctctctggattcaacgcatcaatgccggaactcgtcaacacggggtgaattatggcaatttcatgcacgggttgatgaaggagaacgtacagctgaacaggaaagtcttgtcagaactgtcgatgcacgaaccatacagcttcaaggccctcgtggatgtctctcgcagcgctttccctgggaataagaagtccatagtacctccaaagaaggaaggacttgctgttgttctttgaattagtttcctgtgttgtgctttgtgtactcttcttcttcttcgttaggcataattttgtgctagcatttctgttagcaagtctctaccaatggtattgaagtcttctgtttacgacagtgctttaatggaaatttaatatgctttaattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="47950" stop="43509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47650" g_stop="47465" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44150" g_stop="43822" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="515" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="543"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E545194" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47650" e_stop="47465"/>
          <exon e_start="44150" e_stop="43822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGGGTATGTATAAACCCCTTTTCTCATTTTTTGCAGTTTTTGATTTGTGGGGTTTTTCCCCTTTTCAATATTTTGTCGAATTTGAGTTTTGCTTGGTGTCTTGCTTTTTCTTTACTTTATGATGTGTGCTTAGTCATGGTTGTTGCAGCATGTTGAACCTTTATCATATTAGATGAGTAGTCTTGAAAAATGTAGCTGGCCCAATTAAATATTGCGAGAAGTTTTTGAAAGATAGTGCCCTAAAGGTTGGAGAATCCCGGGACTTGCTCAAGATTTTATCTTGATAAAGATGAAGGTTATATATTAAGGCACAAAGCCTAGTATCCATCCTCTATGGCTAGGATTACGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGCTTTCACTGTTGGTGTTCTTTCTGATCTCTACACATTTCACTGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTTCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATACGAATTCTCCTATATCAATAAGAGACGTGTTTGGGCCCGCTTTGAAAACAGCCAGGAACTACTAGCACAAGATCCAATATTTGATAAGGTTCCATACCCGTAAGGGTTCCAAGCTTCAACCCACAGCTCGAGCATCTTGCTTATATATTGACTTTTCTTGAAAGGGTTCTTTCCAAATGAAAGAATTCATTATGACAGCGGTTCCGAAAAGACAGATTAGACTTGCCCGACCCGGGCATAAGCAGGAAGAAGACTCTGTCGGATTACAATACACAGAGAGAGTATCTATTGACAGTAGGCATCAAGGGGGTAAGCTTTTAAAGGATTTCAATTAGTGTCTACATATATAAGGAACAAACGAAGCAACATGTTATTGCAGTATATCTTTGTCGTATCATTCTATTGATTGATCAATCATTCAATACCAAAGTGATCCATGAAGTTGTATAGCCTATGCCACTCCAATACCAAATCAGTAGAGGTTTTGTAAATCTCACACTTATCCTATGTGATACACAAGTAATTAACCAACTACGAAGACTCCTGGACAAAAATGGACCTAATGTAGTGTAACAGCAGTATCTAAGCTTACTATCAACTATTTGCTATGTCTATGTGGATCCTTTGCTTCTATTGTGTGTTATGTTATTAGTTAAGCTCACGTTGATTTCTCAGAGATTTTGGGTGAGACAACTTTTCTCCCTGTAAATTTACCTAGTTTCATTTGGCACCTTCAGTTATCATATAATGCTCCTAACAAACAATTGCATTTGAGGTTACAAGGAAATAGAAAACATATCTTAGATGACATTCTCTCTATATTCTTCTACATCCTCTGTTGAAATAATTTATGATCTTGTCCAATATTGTATGCTTGTACGTCTATCTTAGCAAAAACAGTTCTTTGACACTCATCTTGTAAATATGTTGGGTGCCAGATGCCTGACGTTCACTCTCATACAACATTGTTGGCTTCACAATTATTCTGTTAGACTTGTCTTTTTTACTTACTTAGGTATCTTCATATCTTTCCTTCTATGTTTCTTTAGCCTTCCTATTGTTATTCTAGTTTTTCTCCTCTATTATCCTTTGGCTCTTTTAGGGTTATCTTTTGATTTTTGAGCCACTAGCCTTAGTTCTTGAACCTTCTGTGTGGAGAATCATACCTTTGTCTATTGGATCTTAAATAGCTCAACATTAATGCTGCTGGATTCTAGAAATTTTGTGGTTCTTACTAGAATTTTCAGCATTGGGATAGGATACCAGAATGGCTGTAAAGTTCCATAATTAAATTAGGGAGCCTGGTATGCCAGTCAAAGAGCAAAATTGCAGGACCCTCAGCAGTGATAACAAAATATGCGTAAGAGTTAAGCTGAATATTCAATTTCCGTTGTTGATACATCTAATCTCCAATGGACTAAGGATTCTTCATAGTGAATAGCTTAACAAAGTACTATTAACTACAAATTTCTAGTTATCTTACACTGCAAAATCAGATAATTATAGATAGAAGCAATGGTTAAGGGAAACATACTTGGTTTACTTTATCCAAAGAAAGGGGAACATACTTGGTTTGTGAAATCTCGTTCTAGAAATGGAGATATTATGAAGGGAGATGCCTCAGGATTCATCCTTATTAACTTTCCACTATTTGCTTTTAGAAACTTGGATGTGGAGGATTTTGAAGAGCATACATTTTCTAAGTTCTACTTTGGGTCTAGGTAATCTTGAAAATAGGAACTTGCTAAAATTGCTTTCAAGGCCACAATAGTACTAATCCTTATAGAACACTATGATTTTTATTTTTTATTTTGAGAATGAGAACACTAGGATTTTGAAGTGCCTTAGTATCCTCCTCCTACACTTTAGGTTCCTTTTTTCAAATAAAGGTGGTGTCAGGACAACTTGTGATTGTTCCACTGTGTACCTATTACATCCCACCAATGCGGCTTAGACAAATTGGACGATATCTTCTGCTCTTCATCTTTTTCAGCATTGTGGAATTCAATATTTGTTAGACACTTTGACTATCCAAATGACAGTGGGGGAAATACCCTATAAAGCTCATAGGCCATAGCTGGAAGATATTGCAGTAGTTCCTTGATATGATAATGATGAAAAGAAGAGAACAAAATGTTGTAGGTGCCCTCGTAGTTATCCTTAGGTAACATGAATGATTCGAGGAACTGACCTCTTAACTGGCACAAATATTCTTTGGTCGTTTTTGCATGTGTCATACTTGCCGCCATACATGCTGTCAGATATTTATTATGAAATTCAGTACTTCTCAGGATCATGTTGTTGGCTCCATTTGGTTAATCTGTGTGTTATTGTTTGAACAGCCTTGTTGCTTTAGATTTTTATGGTAGTACAGCATTGCAAATGGATTTGTTAATCCATTTGATTAGAATATTTGGCCTTATGATTAGTATCTGTGCTTCTTCGTTCTTTCGTTTCTTGTTGTAGTCCTTTTTGTTCCCTCAACTTATTAGTGCCAAAGCCCAAAAGTATATGAAACTCTCTCTCTTTCTGCTTCCCTCTCTTCTGCATGATCAGAAAAGAAACAGAAAACTAATTAGGATATTATTCAACAGTGTACTTTAGCTGAAATAAGCTGCTTTGGTATGTTTGTCACCAATTTTTGACATGAACTTGGCCATTGACGCAGGTCGCTCTACCTGTTAACTAATCATATCTGATGTTCCTAAATGATATTTTTAGCACATCTTTCTACAAGTTAAACAAAAAAAACACCTCTATCTCATCTATTTAACAATTTTCCGATTTCCCTCCAATTCCAGGTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTA</genome_strand>
        <mrna_strand>ATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATATAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545195" ref_strand="+" ref_description="SGN-E545195 [TUS-67-O17]">
      <seq>atgaacaagaaggaagtgtttaagctagctaaagggtttcgaggaagagctaaaaattgcataagaatagcaagagaaagagttgagaaggcgcttcagtactcatatagagaccgccgcaacaagaagagggatatgcgttctctctggattcaacgcatcaatgccggaactcgtcaacacggggtgaattatggcaatttcatgcacgggttgatgaaggagaacgtacagctgaacaggaaagtcttgtcagaactgtcgatgcacgaaccatacagcttcaaggccctcgtggatgtctctcgcagcgctttccctgggaataagaagtccatagtacctccaaagaaggaaggacttgctgttgttctttgaattagtttcctgtgttgtgctttgtgtactcttcttcttcttcgttaggcataattttgtgctagcatttctgttagcaagtctctaccaatggtattgaagtcttctgtttacgacagtgctttaatggaaatttaatatgctttaattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="47950" stop="43509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47650" g_stop="47465" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44150" g_stop="43822" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="515" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="543"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E545195" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47650" e_stop="47465"/>
          <exon e_start="44150" e_stop="43822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGGGTATGTATAAACCCCTTTTCTCATTTTTTGCAGTTTTTGATTTGTGGGGTTTTTCCCCTTTTCAATATTTTGTCGAATTTGAGTTTTGCTTGGTGTCTTGCTTTTTCTTTACTTTATGATGTGTGCTTAGTCATGGTTGTTGCAGCATGTTGAACCTTTATCATATTAGATGAGTAGTCTTGAAAAATGTAGCTGGCCCAATTAAATATTGCGAGAAGTTTTTGAAAGATAGTGCCCTAAAGGTTGGAGAATCCCGGGACTTGCTCAAGATTTTATCTTGATAAAGATGAAGGTTATATATTAAGGCACAAAGCCTAGTATCCATCCTCTATGGCTAGGATTACGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGCTTTCACTGTTGGTGTTCTTTCTGATCTCTACACATTTCACTGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTTCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATACGAATTCTCCTATATCAATAAGAGACGTGTTTGGGCCCGCTTTGAAAACAGCCAGGAACTACTAGCACAAGATCCAATATTTGATAAGGTTCCATACCCGTAAGGGTTCCAAGCTTCAACCCACAGCTCGAGCATCTTGCTTATATATTGACTTTTCTTGAAAGGGTTCTTTCCAAATGAAAGAATTCATTATGACAGCGGTTCCGAAAAGACAGATTAGACTTGCCCGACCCGGGCATAAGCAGGAAGAAGACTCTGTCGGATTACAATACACAGAGAGAGTATCTATTGACAGTAGGCATCAAGGGGGTAAGCTTTTAAAGGATTTCAATTAGTGTCTACATATATAAGGAACAAACGAAGCAACATGTTATTGCAGTATATCTTTGTCGTATCATTCTATTGATTGATCAATCATTCAATACCAAAGTGATCCATGAAGTTGTATAGCCTATGCCACTCCAATACCAAATCAGTAGAGGTTTTGTAAATCTCACACTTATCCTATGTGATACACAAGTAATTAACCAACTACGAAGACTCCTGGACAAAAATGGACCTAATGTAGTGTAACAGCAGTATCTAAGCTTACTATCAACTATTTGCTATGTCTATGTGGATCCTTTGCTTCTATTGTGTGTTATGTTATTAGTTAAGCTCACGTTGATTTCTCAGAGATTTTGGGTGAGACAACTTTTCTCCCTGTAAATTTACCTAGTTTCATTTGGCACCTTCAGTTATCATATAATGCTCCTAACAAACAATTGCATTTGAGGTTACAAGGAAATAGAAAACATATCTTAGATGACATTCTCTCTATATTCTTCTACATCCTCTGTTGAAATAATTTATGATCTTGTCCAATATTGTATGCTTGTACGTCTATCTTAGCAAAAACAGTTCTTTGACACTCATCTTGTAAATATGTTGGGTGCCAGATGCCTGACGTTCACTCTCATACAACATTGTTGGCTTCACAATTATTCTGTTAGACTTGTCTTTTTTACTTACTTAGGTATCTTCATATCTTTCCTTCTATGTTTCTTTAGCCTTCCTATTGTTATTCTAGTTTTTCTCCTCTATTATCCTTTGGCTCTTTTAGGGTTATCTTTTGATTTTTGAGCCACTAGCCTTAGTTCTTGAACCTTCTGTGTGGAGAATCATACCTTTGTCTATTGGATCTTAAATAGCTCAACATTAATGCTGCTGGATTCTAGAAATTTTGTGGTTCTTACTAGAATTTTCAGCATTGGGATAGGATACCAGAATGGCTGTAAAGTTCCATAATTAAATTAGGGAGCCTGGTATGCCAGTCAAAGAGCAAAATTGCAGGACCCTCAGCAGTGATAACAAAATATGCGTAAGAGTTAAGCTGAATATTCAATTTCCGTTGTTGATACATCTAATCTCCAATGGACTAAGGATTCTTCATAGTGAATAGCTTAACAAAGTACTATTAACTACAAATTTCTAGTTATCTTACACTGCAAAATCAGATAATTATAGATAGAAGCAATGGTTAAGGGAAACATACTTGGTTTACTTTATCCAAAGAAAGGGGAACATACTTGGTTTGTGAAATCTCGTTCTAGAAATGGAGATATTATGAAGGGAGATGCCTCAGGATTCATCCTTATTAACTTTCCACTATTTGCTTTTAGAAACTTGGATGTGGAGGATTTTGAAGAGCATACATTTTCTAAGTTCTACTTTGGGTCTAGGTAATCTTGAAAATAGGAACTTGCTAAAATTGCTTTCAAGGCCACAATAGTACTAATCCTTATAGAACACTATGATTTTTATTTTTTATTTTGAGAATGAGAACACTAGGATTTTGAAGTGCCTTAGTATCCTCCTCCTACACTTTAGGTTCCTTTTTTCAAATAAAGGTGGTGTCAGGACAACTTGTGATTGTTCCACTGTGTACCTATTACATCCCACCAATGCGGCTTAGACAAATTGGACGATATCTTCTGCTCTTCATCTTTTTCAGCATTGTGGAATTCAATATTTGTTAGACACTTTGACTATCCAAATGACAGTGGGGGAAATACCCTATAAAGCTCATAGGCCATAGCTGGAAGATATTGCAGTAGTTCCTTGATATGATAATGATGAAAAGAAGAGAACAAAATGTTGTAGGTGCCCTCGTAGTTATCCTTAGGTAACATGAATGATTCGAGGAACTGACCTCTTAACTGGCACAAATATTCTTTGGTCGTTTTTGCATGTGTCATACTTGCCGCCATACATGCTGTCAGATATTTATTATGAAATTCAGTACTTCTCAGGATCATGTTGTTGGCTCCATTTGGTTAATCTGTGTGTTATTGTTTGAACAGCCTTGTTGCTTTAGATTTTTATGGTAGTACAGCATTGCAAATGGATTTGTTAATCCATTTGATTAGAATATTTGGCCTTATGATTAGTATCTGTGCTTCTTCGTTCTTTCGTTTCTTGTTGTAGTCCTTTTTGTTCCCTCAACTTATTAGTGCCAAAGCCCAAAAGTATATGAAACTCTCTCTCTTTCTGCTTCCCTCTCTTCTGCATGATCAGAAAAGAAACAGAAAACTAATTAGGATATTATTCAACAGTGTACTTTAGCTGAAATAAGCTGCTTTGGTATGTTTGTCACCAATTTTTGACATGAACTTGGCCATTGACGCAGGTCGCTCTACCTGTTAACTAATCATATCTGATGTTCCTAAATGATATTTTTAGCACATCTTTCTACAAGTTAAACAAAAAAAACACCTCTATCTCATCTATTTAACAATTTTCCGATTTCCCTCCAATTCCAGGTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTA</genome_strand>
        <mrna_strand>ATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATATAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310025" ref_strand="+" ref_description="SGN-E310025 [cLEZ-8-A17]">
      <seq>tgaacaagaaggaagtgtttaagctagctaaagggtttcgaggaagagctaaaaattgcataagaatagcaagagaaagagttgagaaggcgcttcagtactcatatagagaccgccgcaacaagaagagggatatgcgttctctctggattcaacgcatcaatgccggaactcgtcaacacggggtgaattatggcaatttcatgcacgggttgatgaaggagaacgtacagctgaacaggaaagtcttgtcagaactgtcgatgcacgaaccatacagcttcaaggccctcgtggatgtctctcgcagcgctttccctgggaataagaagtccatagtacctccaaagaaggaaggacttgctgttgttctttgaattagtttcctgtgttgtgctttgtgtactcttcttcttcttcgttaggcataattttgtgctagcatttctgttagcaagtctctaccaatggtattgaagtcttctgtttacgacagtgctttaatggaaatttaatatgctttaattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="47949" stop="43509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47649" g_stop="47465" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44150" g_stop="43822" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="514" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="542"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E310025" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47649" e_stop="47465"/>
          <exon e_start="44150" e_stop="43822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGGGTATGTATAAACCCCTTTTCTCATTTTTTGCAGTTTTTGATTTGTGGGGTTTTTCCCCTTTTCAATATTTTGTCGAATTTGAGTTTTGCTTGGTGTCTTGCTTTTTCTTTACTTTATGATGTGTGCTTAGTCATGGTTGTTGCAGCATGTTGAACCTTTATCATATTAGATGAGTAGTCTTGAAAAATGTAGCTGGCCCAATTAAATATTGCGAGAAGTTTTTGAAAGATAGTGCCCTAAAGGTTGGAGAATCCCGGGACTTGCTCAAGATTTTATCTTGATAAAGATGAAGGTTATATATTAAGGCACAAAGCCTAGTATCCATCCTCTATGGCTAGGATTACGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGCTTTCACTGTTGGTGTTCTTTCTGATCTCTACACATTTCACTGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTTCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATACGAATTCTCCTATATCAATAAGAGACGTGTTTGGGCCCGCTTTGAAAACAGCCAGGAACTACTAGCACAAGATCCAATATTTGATAAGGTTCCATACCCGTAAGGGTTCCAAGCTTCAACCCACAGCTCGAGCATCTTGCTTATATATTGACTTTTCTTGAAAGGGTTCTTTCCAAATGAAAGAATTCATTATGACAGCGGTTCCGAAAAGACAGATTAGACTTGCCCGACCCGGGCATAAGCAGGAAGAAGACTCTGTCGGATTACAATACACAGAGAGAGTATCTATTGACAGTAGGCATCAAGGGGGTAAGCTTTTAAAGGATTTCAATTAGTGTCTACATATATAAGGAACAAACGAAGCAACATGTTATTGCAGTATATCTTTGTCGTATCATTCTATTGATTGATCAATCATTCAATACCAAAGTGATCCATGAAGTTGTATAGCCTATGCCACTCCAATACCAAATCAGTAGAGGTTTTGTAAATCTCACACTTATCCTATGTGATACACAAGTAATTAACCAACTACGAAGACTCCTGGACAAAAATGGACCTAATGTAGTGTAACAGCAGTATCTAAGCTTACTATCAACTATTTGCTATGTCTATGTGGATCCTTTGCTTCTATTGTGTGTTATGTTATTAGTTAAGCTCACGTTGATTTCTCAGAGATTTTGGGTGAGACAACTTTTCTCCCTGTAAATTTACCTAGTTTCATTTGGCACCTTCAGTTATCATATAATGCTCCTAACAAACAATTGCATTTGAGGTTACAAGGAAATAGAAAACATATCTTAGATGACATTCTCTCTATATTCTTCTACATCCTCTGTTGAAATAATTTATGATCTTGTCCAATATTGTATGCTTGTACGTCTATCTTAGCAAAAACAGTTCTTTGACACTCATCTTGTAAATATGTTGGGTGCCAGATGCCTGACGTTCACTCTCATACAACATTGTTGGCTTCACAATTATTCTGTTAGACTTGTCTTTTTTACTTACTTAGGTATCTTCATATCTTTCCTTCTATGTTTCTTTAGCCTTCCTATTGTTATTCTAGTTTTTCTCCTCTATTATCCTTTGGCTCTTTTAGGGTTATCTTTTGATTTTTGAGCCACTAGCCTTAGTTCTTGAACCTTCTGTGTGGAGAATCATACCTTTGTCTATTGGATCTTAAATAGCTCAACATTAATGCTGCTGGATTCTAGAAATTTTGTGGTTCTTACTAGAATTTTCAGCATTGGGATAGGATACCAGAATGGCTGTAAAGTTCCATAATTAAATTAGGGAGCCTGGTATGCCAGTCAAAGAGCAAAATTGCAGGACCCTCAGCAGTGATAACAAAATATGCGTAAGAGTTAAGCTGAATATTCAATTTCCGTTGTTGATACATCTAATCTCCAATGGACTAAGGATTCTTCATAGTGAATAGCTTAACAAAGTACTATTAACTACAAATTTCTAGTTATCTTACACTGCAAAATCAGATAATTATAGATAGAAGCAATGGTTAAGGGAAACATACTTGGTTTACTTTATCCAAAGAAAGGGGAACATACTTGGTTTGTGAAATCTCGTTCTAGAAATGGAGATATTATGAAGGGAGATGCCTCAGGATTCATCCTTATTAACTTTCCACTATTTGCTTTTAGAAACTTGGATGTGGAGGATTTTGAAGAGCATACATTTTCTAAGTTCTACTTTGGGTCTAGGTAATCTTGAAAATAGGAACTTGCTAAAATTGCTTTCAAGGCCACAATAGTACTAATCCTTATAGAACACTATGATTTTTATTTTTTATTTTGAGAATGAGAACACTAGGATTTTGAAGTGCCTTAGTATCCTCCTCCTACACTTTAGGTTCCTTTTTTCAAATAAAGGTGGTGTCAGGACAACTTGTGATTGTTCCACTGTGTACCTATTACATCCCACCAATGCGGCTTAGACAAATTGGACGATATCTTCTGCTCTTCATCTTTTTCAGCATTGTGGAATTCAATATTTGTTAGACACTTTGACTATCCAAATGACAGTGGGGGAAATACCCTATAAAGCTCATAGGCCATAGCTGGAAGATATTGCAGTAGTTCCTTGATATGATAATGATGAAAAGAAGAGAACAAAATGTTGTAGGTGCCCTCGTAGTTATCCTTAGGTAACATGAATGATTCGAGGAACTGACCTCTTAACTGGCACAAATATTCTTTGGTCGTTTTTGCATGTGTCATACTTGCCGCCATACATGCTGTCAGATATTTATTATGAAATTCAGTACTTCTCAGGATCATGTTGTTGGCTCCATTTGGTTAATCTGTGTGTTATTGTTTGAACAGCCTTGTTGCTTTAGATTTTTATGGTAGTACAGCATTGCAAATGGATTTGTTAATCCATTTGATTAGAATATTTGGCCTTATGATTAGTATCTGTGCTTCTTCGTTCTTTCGTTTCTTGTTGTAGTCCTTTTTGTTCCCTCAACTTATTAGTGCCAAAGCCCAAAAGTATATGAAACTCTCTCTCTTTCTGCTTCCCTCTCTTCTGCATGATCAGAAAAGAAACAGAAAACTAATTAGGATATTATTCAACAGTGTACTTTAGCTGAAATAAGCTGCTTTGGTATGTTTGTCACCAATTTTTGACATGAACTTGGCCATTGACGCAGGTCGCTCTACCTGTTAACTAATCATATCTGATGTTCCTAAATGATATTTTTAGCACATCTTTCTACAAGTTAAACAAAAAAAACACCTCTATCTCATCTATTTAACAATTTTCCGATTTCCCTCCAATTCCAGGTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTA</genome_strand>
        <mrna_strand>TGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATATAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567308" ref_strand="+" ref_description="SGN-E567308 [11414]">
      <seq>ttgagaagcagagaaatagcgctacaagatgaacaaaaaggaagtgtttagctagctaaagggtttcgaaggaagagctaaaaactgcataagaatagctagagaaagagtggagaaggcgcttcagtactcatatagagaccggcgcaacaagaagagggatatgcgttctctctggattcaacgcatcaatgccggaactcgccaacatggggtgaattatggcaatttcatgcacgggctgatgaaggagaacgtacagctgaacaggaaagtcttgtcagaactgtcgatgcacgaaccatacagcttcaaggcccttgtggacgtctctcgcagcgctttccctgggaataagaagtccatagtacctccagaagaaggaagggcttgctattgttctttgaattaatttcctatgttgtgctttgtgtactctttttcttctattttgggcataattttgtgctagcatttctgttagcaaatttctaccaatagtattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="47978" stop="43558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47679" g_stop="47465" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44150" g_stop="43858" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="508" r_length="294" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E567308" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47679" e_stop="47465"/>
          <exon e_start="44150" e_stop="43858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGAAGCAGAGAAGAAGGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCG-AGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGGGTATGTATAAACCCCTTTTCTCATTTTTTGCAGTTTTTGATTTGTGGGGTTTTTCCCCTTTTCAATATTTTGTCGAATTTGAGTTTTGCTTGGTGTCTTGCTTTTTCTTTACTTTATGATGTGTGCTTAGTCATGGTTGTTGCAGCATGTTGAACCTTTATCATATTAGATGAGTAGTCTTGAAAAATGTAGCTGGCCCAATTAAATATTGCGAGAAGTTTTTGAAAGATAGTGCCCTAAAGGTTGGAGAATCCCGGGACTTGCTCAAGATTTTATCTTGATAAAGATGAAGGTTATATATTAAGGCACAAAGCCTAGTATCCATCCTCTATGGCTAGGATTACGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGCTTTCACTGTTGGTGTTCTTTCTGATCTCTACACATTTCACTGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTTCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATACGAATTCTCCTATATCAATAAGAGACGTGTTTGGGCCCGCTTTGAAAACAGCCAGGAACTACTAGCACAAGATCCAATATTTGATAAGGTTCCATACCCGTAAGGGTTCCAAGCTTCAACCCACAGCTCGAGCATCTTGCTTATATATTGACTTTTCTTGAAAGGGTTCTTTCCAAATGAAAGAATTCATTATGACAGCGGTTCCGAAAAGACAGATTAGACTTGCCCGACCCGGGCATAAGCAGGAAGAAGACTCTGTCGGATTACAATACACAGAGAGAGTATCTATTGACAGTAGGCATCAAGGGGGTAAGCTTTTAAAGGATTTCAATTAGTGTCTACATATATAAGGAACAAACGAAGCAACATGTTATTGCAGTATATCTTTGTCGTATCATTCTATTGATTGATCAATCATTCAATACCAAAGTGATCCATGAAGTTGTATAGCCTATGCCACTCCAATACCAAATCAGTAGAGGTTTTGTAAATCTCACACTTATCCTATGTGATACACAAGTAATTAACCAACTACGAAGACTCCTGGACAAAAATGGACCTAATGTAGTGTAACAGCAGTATCTAAGCTTACTATCAACTATTTGCTATGTCTATGTGGATCCTTTGCTTCTATTGTGTGTTATGTTATTAGTTAAGCTCACGTTGATTTCTCAGAGATTTTGGGTGAGACAACTTTTCTCCCTGTAAATTTACCTAGTTTCATTTGGCACCTTCAGTTATCATATAATGCTCCTAACAAACAATTGCATTTGAGGTTACAAGGAAATAGAAAACATATCTTAGATGACATTCTCTCTATATTCTTCTACATCCTCTGTTGAAATAATTTATGATCTTGTCCAATATTGTATGCTTGTACGTCTATCTTAGCAAAAACAGTTCTTTGACACTCATCTTGTAAATATGTTGGGTGCCAGATGCCTGACGTTCACTCTCATACAACATTGTTGGCTTCACAATTATTCTGTTAGACTTGTCTTTTTTACTTACTTAGGTATCTTCATATCTTTCCTTCTATGTTTCTTTAGCCTTCCTATTGTTATTCTAGTTTTTCTCCTCTATTATCCTTTGGCTCTTTTAGGGTTATCTTTTGATTTTTGAGCCACTAGCCTTAGTTCTTGAACCTTCTGTGTGGAGAATCATACCTTTGTCTATTGGATCTTAAATAGCTCAACATTAATGCTGCTGGATTCTAGAAATTTTGTGGTTCTTACTAGAATTTTCAGCATTGGGATAGGATACCAGAATGGCTGTAAAGTTCCATAATTAAATTAGGGAGCCTGGTATGCCAGTCAAAGAGCAAAATTGCAGGACCCTCAGCAGTGATAACAAAATATGCGTAAGAGTTAAGCTGAATATTCAATTTCCGTTGTTGATACATCTAATCTCCAATGGACTAAGGATTCTTCATAGTGAATAGCTTAACAAAGTACTATTAACTACAAATTTCTAGTTATCTTACACTGCAAAATCAGATAATTATAGATAGAAGCAATGGTTAAGGGAAACATACTTGGTTTACTTTATCCAAAGAAAGGGGAACATACTTGGTTTGTGAAATCTCGTTCTAGAAATGGAGATATTATGAAGGGAGATGCCTCAGGATTCATCCTTATTAACTTTCCACTATTTGCTTTTAGAAACTTGGATGTGGAGGATTTTGAAGAGCATACATTTTCTAAGTTCTACTTTGGGTCTAGGTAATCTTGAAAATAGGAACTTGCTAAAATTGCTTTCAAGGCCACAATAGTACTAATCCTTATAGAACACTATGATTTTTATTTTTTATTTTGAGAATGAGAACACTAGGATTTTGAAGTGCCTTAGTATCCTCCTCCTACACTTTAGGTTCCTTTTTTCAAATAAAGGTGGTGTCAGGACAACTTGTGATTGTTCCACTGTGTACCTATTACATCCCACCAATGCGGCTTAGACAAATTGGACGATATCTTCTGCTCTTCATCTTTTTCAGCATTGTGGAATTCAATATTTGTTAGACACTTTGACTATCCAAATGACAGTGGGGGAAATACCCTATAAAGCTCATAGGCCATAGCTGGAAGATATTGCAGTAGTTCCTTGATATGATAATGATGAAAAGAAGAGAACAAAATGTTGTAGGTGCCCTCGTAGTTATCCTTAGGTAACATGAATGATTCGAGGAACTGACCTCTTAACTGGCACAAATATTCTTTGGTCGTTTTTGCATGTGTCATACTTGCCGCCATACATGCTGTCAGATATTTATTATGAAATTCAGTACTTCTCAGGATCATGTTGTTGGCTCCATTTGGTTAATCTGTGTGTTATTGTTTGAACAGCCTTGTTGCTTTAGATTTTTATGGTAGTACAGCATTGCAAATGGATTTGTTAATCCATTTGATTAGAATATTTGGCCTTATGATTAGTATCTGTGCTTCTTCGTTCTTTCGTTTCTTGTTGTAGTCCTTTTTGTTCCCTCAACTTATTAGTGCCAAAGCCCAAAAGTATATGAAACTCTCTCTCTTTCTGCTTCCCTCTCTTCTGCATGATCAGAAAAGAAACAGAAAACTAATTAGGATATTATTCAACAGTGTACTTTAGCTGAAATAAGCTGCTTTGGTATGTTTGTCACCAATTTTTGACATGAACTTGGCCATTGACGCAGGTCGCTCTACCTGTTAACTAATCATATCTGATGTTCCTAAATGATATTTTTAGCACATCTTTCTACAAGTTAAACAAAAAAAACACCTCTATCTCATCTATTTAACAATTTTCCGATTTCCCTCCAATTCCAGGTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCA-AAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAA</genome_strand>
        <mrna_strand>TTGAGAAGCAGAGAA-ATAGCGCTACAAGATGAACAAAAAGGAAGTGTTT-AGCTAGCTAAAGGGTTTCGAAGGAAGAGCTAAAAACTGCATAAGAATAGCTAGAGAAAGAGTGGAGAAGGCGCTTCAGTACTCATATAGAGACCGGCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGCCAACATGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTATGGCAATTTCATGCACGGGCTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTTGTGGACGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAGAAGAAGGAAGGGCTTGCTATTGTTCTTTGAATTAATTTCCTATGTTGTGCTTTGTGTACTCTTTTTCTTCTATTTTGGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAATTTCTACCAATAGTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687679" ref_strand="+" ref_description="SGN-E687679 [T3_tus_79_G15]">
      <seq>tgatggttggacaattatgggtagtgatggtgttgatgatgtaacaattgctgtaaactcatcaccaagtaaattccttgatgcacaatacaacaccttgtcaattctccctacttttggaggagtactgtgtgcacgggcatcaatgcttcttcaggatgtttgccctgctttgcttgtccgtttccttatacgagcaccgttcggagtgggctgactatggagttgatgcttactcttctgcatctcttaaagccagtccttatgctgtcccttgtgccagacctggtgtcttccccagtagccaggtcattttaccgcttgctcagactgtggaacatgaggagtttcttgaggttgttcggctagagggtcatgctttctctccagatgacatagctttatcgcgggatatgtatttgttacagctatgcagtggagttgaagagaatgccacaggtgcctgtgcgcagcttgtttttgcacatattgatgaatcttttggtgatgatgctccattgcttccatctggtttctctgtcattccactggagcctaaatcagattctcctagtgctgctcggactttagatttagcttcaactcttgaagctagaactggtgggacacggccagctggtgaagttgaaggaagcagttacaaccatcgttcagtcttgacaattgcattccagtttgcctttgagaatcactatcgagaagatgtaactgctatggctcgccaatatgtacaaagcattgtaggctctgttcagagagttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="56408" stop="58344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56708" g_stop="56864" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56865" i_stop="56968" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56969" g_stop="57157" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="347" r_length="190" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57158" i_stop="57266" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57347" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="428" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57348" i_stop="57429" i_length="82">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57430" g_stop="57564" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="563" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57565" i_stop="57821" i_length="257">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57822" g_stop="58044" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="786" r_length="223" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E687679" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56708" e_stop="56864"/>
          <exon e_start="56969" e_stop="57157"/>
          <exon e_start="57267" e_stop="57347"/>
          <exon e_start="57430" e_stop="57564"/>
          <exon e_start="57822" e_stop="58044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGTTGGACAATTATGGGTAGTGATGGTGTTGATGATGTAACAATTGCTGTAAACTCATCACCAAGTAAATTCCTTGATGCACAATACAACACCTTGTCAATTCTCCCTACTTTTGGAGGAGTACTGTGTGCACGGGCATCAATGCTTCTTCAGGTATGTTTAAGTTCAAATACTTATAGGACATATTGCTGTAATAGTATCACATAATTCTAAGTGCTTGATGTGGTGTTATTCTTTTTTGCACTTCCCTTTTGTAGGATGTTTGCCCTGCTTTGCTTGTCCGTTTCCTTA-GGGAGCACCGTTCGGAGTGGGCTGACTATGGAGTTGATGCTTACTCTTCTGCATCTCTTAAAGCCAGTCCTTATGCTGTCCCTTGTGCCAGACCTGGTGTCTTCCCCAGTAGCCAGGTCATTTTACCGCTTGCTCAGACTGTGGAACATGAGGAGGTAAGTAGGTCATATGCTATATTTTGTGATTGTGACTGTTGCAGACGTTGTCTATGGTCTCTGACTGATCATATAACCGCGGTTTAATCTGAATTTACTATGTACCTAGTTTCTTGAGGTTGTTCGGCTAGAGGGTCATGCTTTCTCTCCAGAGGACATAGCTTTATCGCGGGATATGTATTTGTTACAGGTTGATAGCTCTCCCTTGGTTGAGATTCACTTTGTTCTTTCTGAGGGTTTTAAGTTCTAATGCTCTTGCTATAACAATGCAGCTATGCAGTGGAGTTGAAGAGAATGCCACAGGTGCCTGTGCGCAGCTTGTTTTTGCACATATTGATGAATCTTTTGGTGATGATGCTCCATTGCTTCCATCTGGTTTCTCTGTCATTCCACTGGAGCCTAAATCAGTTAAGTGATGTCTATTTTGTATCCTACAACTTCAACGTGTTATGAATTTCTTTAAGCTTTTTAGACACAAACTTTTTCTGCCTTTCATTTTTTTGAGAATTGTAGATTATTTATGGTGCTTTGAAAAGTTTATTAGCATCTGAAGGTGCAATTTGGTGTTTGAGAAGTCACCTGGCATCCGAAAACTGTCATGGATATGTGGATTAGTTTCTTACCTTATTCTTACAGTTTAGTACTGCTACTCCTTGTGATGCAGGATTCTCCTAGTGCTGCTCGGACTTTAGATTTAGCTTCAACTCTTGAAGCTAGAACTGGTGGGACACGGCCAGCTGGTGAAGTTGAAGGAAGCAGTTACAACCATCGTTCAGTCTTGACAATTGCATTCCAGTTTGCCTTTGAGAATCACTATCGAGAAAATGTAGCTGCTATGGCTCGCCAATATGTACGAAGCATTGTAGGCTCTGTTCAGAGAGTTGCTA</genome_strand>
        <mrna_strand>TGATGGTTGGACAATTATGGGTAGTGATGGTGTTGATGATGTAACAATTGCTGTAAACTCATCACCAAGTAAATTCCTTGATGCACAATACAACACCTTGTCAATTCTCCCTACTTTTGGAGGAGTACTGTGTGCACGGGCATCAATGCTTCTTCAG........................................................................................................GATGTTTGCCCTGCTTTGCTTGTCCGTTTCCTTATACGAGCACCGTTCGGAGTGGGCTGACTATGGAGTTGATGCTTACTCTTCTGCATCTCTTAAAGCCAGTCCTTATGCTGTCCCTTGTGCCAGACCTGGTGTCTTCCCCAGTAGCCAGGTCATTTTACCGCTTGCTCAGACTGTGGAACATGAGGAG.............................................................................................................TTTCTTGAGGTTGTTCGGCTAGAGGGTCATGCTTTCTCTCCAGATGACATAGCTTTATCGCGGGATATGTATTTGTTACAG..................................................................................CTATGCAGTGGAGTTGAAGAGAATGCCACAGGTGCCTGTGCGCAGCTTGTTTTTGCACATATTGATGAATCTTTTGGTGATGATGCTCCATTGCTTCCATCTGGTTTCTCTGTCATTCCACTGGAGCCTAAATCA.................................................................................................................................................................................................................................................................GATTCTCCTAGTGCTGCTCGGACTTTAGATTTAGCTTCAACTCTTGAAGCTAGAACTGGTGGGACACGGCCAGCTGGTGAAGTTGAAGGAAGCAGTTACAACCATCGTTCAGTCTTGACAATTGCATTCCAGTTTGCCTTTGAGAATCACTATCGAGAAGATGTAACTGCTATGGCTCGCCAATATGTACAAAGCATTGTAGGCTCTGTTCAGAGAGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322050" ref_strand="+" ref_description="SGN-E322050 [cTOB-29-I3]">
      <seq>gatggttggacaattatgggtagtgatggtgttgatgatgtaacaattgctgtaaactcatcaccaagtaaattccttgatgcacaatacaacaccttgtcaattctccctacttttggaggagtactgtgtgcacgggcatcaatgcttcttcaggatgtttgccctgctttgcttgtccgtttccttagggagcaccgttcggagtgggctgactatggagttgatgcttactcttctgcatctcttaaagccagtccttatgctgtcccttgtgccagacctggtgtcttccccagtagccaggtcattttaccgcttgctcagactgtggaacatgaggagtttcttgaggttgttcggctagagggtcatgctttctctccagatgacatagctttatcgcgggatatgtatttgttacagctatgcagtggagttgaagagaatgccacaggtgcctgtgcgcagcttgtttttgcacatattgatgaatcttttggtgatgatgctccattgcttccatctggtttctctgtcattccactggagcctaaatcagattctcctagtgctgctcggactttagatttagcttcaactcttgaagctagaactggtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="56409" stop="58184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56709" g_stop="56864" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56865" i_stop="56968" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56969" g_stop="57157" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="345" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57158" i_stop="57266" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57267" g_stop="57347" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="426" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57348" i_stop="57429" i_length="82">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57430" g_stop="57564" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="561" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57565" i_stop="57821" i_length="257">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57822" g_stop="57884" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="624" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E322050" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56709" e_stop="56864"/>
          <exon e_start="56969" e_stop="57157"/>
          <exon e_start="57267" e_stop="57347"/>
          <exon e_start="57430" e_stop="57564"/>
          <exon e_start="57822" e_stop="57884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTTGGACAATTATGGGTAGTGATGGTGTTGATGATGTAACAATTGCTGTAAACTCATCACCAAGTAAATTCCTTGATGCACAATACAACACCTTGTCAATTCTCCCTACTTTTGGAGGAGTACTGTGTGCACGGGCATCAATGCTTCTTCAGGTATGTTTAAGTTCAAATACTTATAGGACATATTGCTGTAATAGTATCACATAATTCTAAGTGCTTGATGTGGTGTTATTCTTTTTTGCACTTCCCTTTTGTAGGATGTTTGCCCTGCTTTGCTTGTCCGTTTCCTTAGGGAGCACCGTTCGGAGTGGGCTGACTATGGAGTTGATGCTTACTCTTCTGCATCTCTTAAAGCCAGTCCTTATGCTGTCCCTTGTGCCAGACCTGGTGTCTTCCCCAGTAGCCAGGTCATTTTACCGCTTGCTCAGACTGTGGAACATGAGGAGGTAAGTAGGTCATATGCTATATTTTGTGATTGTGACTGTTGCAGACGTTGTCTATGGTCTCTGACTGATCATATAACCGCGGTTTAATCTGAATTTACTATGTACCTAGTTTCTTGAGGTTGTTCGGCTAGAGGGTCATGCTTTCTCTCCAGAGGACATAGCTTTATCGCGGGATATGTATTTGTTACAGGTTGATAGCTCTCCCTTGGTTGAGATTCACTTTGTTCTTTCTGAGGGTTTTAAGTTCTAATGCTCTTGCTATAACAATGCAGCTATGCAGTGGAGTTGAAGAGAATGCCACAGGTGCCTGTGCGCAGCTTGTTTTTGCACATATTGATGAATCTTTTGGTGATGATGCTCCATTGCTTCCATCTGGTTTCTCTGTCATTCCACTGGAGCCTAAATCAGTTAAGTGATGTCTATTTTGTATCCTACAACTTCAACGTGTTATGAATTTCTTTAAGCTTTTTAGACACAAACTTTTTCTGCCTTTCATTTTTTTGAGAATTGTAGATTATTTATGGTGCTTTGAAAAGTTTATTAGCATCTGAAGGTGCAATTTGGTGTTTGAGAAGTCACCTGGCATCCGAAAACTGTCATGGATATGTGGATTAGTTTCTTACCTTATTCTTACAGTTTAGTACTGCTACTCCTTGTGATGCAGGATTCTCCTAGTGCTGCTCGGACTTTAGATTTAGCTTCAACTCTTGAAGCTAGAACTGGTGGG</genome_strand>
        <mrna_strand>GATGGTTGGACAATTATGGGTAGTGATGGTGTTGATGATGTAACAATTGCTGTAAACTCATCACCAAGTAAATTCCTTGATGCACAATACAACACCTTGTCAATTCTCCCTACTTTTGGAGGAGTACTGTGTGCACGGGCATCAATGCTTCTTCAG........................................................................................................GATGTTTGCCCTGCTTTGCTTGTCCGTTTCCTTAGGGAGCACCGTTCGGAGTGGGCTGACTATGGAGTTGATGCTTACTCTTCTGCATCTCTTAAAGCCAGTCCTTATGCTGTCCCTTGTGCCAGACCTGGTGTCTTCCCCAGTAGCCAGGTCATTTTACCGCTTGCTCAGACTGTGGAACATGAGGAG.............................................................................................................TTTCTTGAGGTTGTTCGGCTAGAGGGTCATGCTTTCTCTCCAGATGACATAGCTTTATCGCGGGATATGTATTTGTTACAG..................................................................................CTATGCAGTGGAGTTGAAGAGAATGCCACAGGTGCCTGTGCGCAGCTTGTTTTTGCACATATTGATGAATCTTTTGGTGATGATGCTCCATTGCTTCCATCTGGTTTCTCTGTCATTCCACTGGAGCCTAAATCA.................................................................................................................................................................................................................................................................GATTCTCCTAGTGCTGCTCGGACTTTAGATTTAGCTTCAACTCTTGAAGCTAGAACTGGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317019" ref_strand="+" ref_description="SGN-E317019 [cTOA-27-I5]">
      <seq>tttgttacagctatgcagtggagttgaagagaatgccacaggtgcctgtgcgcagcttgtttttgcacatattgatgaatcttttggtgatgatgctccattgcttccatctggtttctctgtcattccactggagcctaaatcagattctcctagtgctgctcggactttagatttagcttcaactcttgaagctagaactggtgggacacggccagctggtgaagttgaaggaagcagttacaaccatcgttcagtcttgacaattgcattccagtttgcctttgagaatcactatcgagaaaatgtagctgctatggctcgccaatatgtacgaaacattgtaagctctgttcacagaattgctatggctattgcaccctctcgactctgctctcagttgacacctaaatccttccctggttcaccacaagctgtcactttggcgagatggatttgcaggagctataagaatcatactggtggagaattgctacagatggattctctagctgccggtgatgctgttctgaagcaactatggcatcatactgattcaataatgtgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="57125" stop="58839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57338" g_stop="57347" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57348" i_stop="57429" i_length="82">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57430" g_stop="57564" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="145" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57565" i_stop="57821" i_length="257">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57822" g_stop="58147" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="471" r_length="326" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58148" i_stop="58438" i_length="291">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58439" g_stop="58539" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="572" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E317019" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57338" e_stop="57347"/>
          <exon e_start="57430" e_stop="57564"/>
          <exon e_start="57822" e_stop="58147"/>
          <exon e_start="58439" e_stop="58539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTACAGGTTGATAGCTCTCCCTTGGTTGAGATTCACTTTGTTCTTTCTGAGGGTTTTAAGTTCTAATGCTCTTGCTATAACAATGCAGCTATGCAGTGGAGTTGAAGAGAATGCCACAGGTGCCTGTGCGCAGCTTGTTTTTGCACATATTGATGAATCTTTTGGTGATGATGCTCCATTGCTTCCATCTGGTTTCTCTGTCATTCCACTGGAGCCTAAATCAGTTAAGTGATGTCTATTTTGTATCCTACAACTTCAACGTGTTATGAATTTCTTTAAGCTTTTTAGACACAAACTTTTTCTGCCTTTCATTTTTTTGAGAATTGTAGATTATTTATGGTGCTTTGAAAAGTTTATTAGCATCTGAAGGTGCAATTTGGTGTTTGAGAAGTCACCTGGCATCCGAAAACTGTCATGGATATGTGGATTAGTTTCTTACCTTATTCTTACAGTTTAGTACTGCTACTCCTTGTGATGCAGGATTCTCCTAGTGCTGCTCGGACTTTAGATTTAGCTTCAACTCTTGAAGCTAGAACTGGTGGGACACGGCCAGCTGGTGAAGTTGAAGGAAGCAGTTACAACCATCGTTCAGTCTTGACAATTGCATTCCAGTTTGCCTTTGAGAATCACTATCGAGAAAATGTAGCTGCTATGGCTCGCCAATATGTACGAAGCATTGTAGGCTCTGTTCAGAGAGTTGCTATGGCTATTGCACCCTCTCGACTCTGCTCTCAGTTGACACCTAAATCCTTCCCTGGTTCACCAGAAGCTGTCACTTTGGCGAGATGGATTTGCAGGAGCTATAAGTAAGGGTTCTAACTTCTAAGGTCTTTGCAGTAATTCATAGTTATCTGAGTTTTGCACCACCAATTAGCAATTCCTGATTTATGCAGATAAATGTTGTTGTGTGAAGCATAGTATAAATGAAAGGTTCTCAATTCACATCCAAAACTGAGGCCACTCTGATTCATTTGCACCCTTGCATTAACCAATGCCGAACGACTCATCCCTTAACTTGCACCCTGATGTACTCGTGGAACACTTTTAACATTTTTCCCAGTTTCTCTTCCTGGTTTTACTGATTCAATGTATTTCAGGAATCATACTGGTGGAGAATTGCTACAGATGGATTCTCAAGCTGCCGGTGATGCTGTTCTGAAGCAACTATGGCATCATACTGATTCAATAATGTGCTGCT</genome_strand>
        <mrna_strand>TTTGTTACAG..................................................................................CTATGCAGTGGAGTTGAAGAGAATGCCACAGGTGCCTGTGCGCAGCTTGTTTTTGCACATATTGATGAATCTTTTGGTGATGATGCTCCATTGCTTCCATCTGGTTTCTCTGTCATTCCACTGGAGCCTAAATCA.................................................................................................................................................................................................................................................................GATTCTCCTAGTGCTGCTCGGACTTTAGATTTAGCTTCAACTCTTGAAGCTAGAACTGGTGGGACACGGCCAGCTGGTGAAGTTGAAGGAAGCAGTTACAACCATCGTTCAGTCTTGACAATTGCATTCCAGTTTGCCTTTGAGAATCACTATCGAGAAAATGTAGCTGCTATGGCTCGCCAATATGTACGAAACATTGTAAGCTCTGTTCACAGAATTGCTATGGCTATTGCACCCTCTCGACTCTGCTCTCAGTTGACACCTAAATCCTTCCCTGGTTCACCACAAGCTGTCACTTTGGCGAGATGGATTTGCAGGAGCTATAA...................................................................................................................................................................................................................................................................................................GAATCATACTGGTGGAGAATTGCTACAGATGGATTCTCTAGCTGCCGGTGATGCTGTTCTGAAGCAACTATGGCATCATACTGATTCAATAATGTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319788" ref_strand="+" ref_description="SGN-E319788 [cTOB-12-F21]">
      <seq>cattgtaggctctgttcagagagttgctatggctattgcaccctctcgactctgctctcagttgacacctaaatccttccctggttcaccagaagctgtcactttggcgagatggatttgcaggagctataagaatcatactggtggagaattgctacagatggattctcaagctgccggtgatgctgttctgaagcaactatggcatcatactgattcaataatgtgctgctccgtcaaaatgaatgattctgcatttttttcatttgcaaaccaagcaggacttgacatgcttgaaaccactctaatagctcttcaggatataatgcttgataagatcctagatgaagctggtcgaaaggtcctcctttcagagttccccaagattatgcagcagggctttgcttatctgccagcagggctatgtgtatcgagcatggggaggccagtgtcgtacgagcgagctgttgcatggaaggtccttaatgatgacaactccaatcactgcctagctttcatgttcacaaactggtcttttatttaagttcaaaacatatgatctgcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="57716" stop="59516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58016" g_stop="58147" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58148" i_stop="58438" i_length="291">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58439" g_stop="58553" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="247" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58554" i_stop="58672" i_length="119">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58673" g_stop="58822" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="397" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58823" i_stop="59046" i_length="224">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59047" g_stop="59216" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="567" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E319788" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58016" e_stop="58147"/>
          <exon e_start="58439" e_stop="58553"/>
          <exon e_start="58673" e_stop="58822"/>
          <exon e_start="59047" e_stop="59216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTAGGCTCTGTTCAGAGAGTTGCTATGGCTATTGCACCCTCTCGACTCTGCTCTCAGTTGACACCTAAATCCTTCCCTGGTTCACCAGAAGCTGTCACTTTGGCGAGATGGATTTGCAGGAGCTATAAGTAAGGGTTCTAACTTCTAAGGTCTTTGCAGTAATTCATAGTTATCTGAGTTTTGCACCACCAATTAGCAATTCCTGATTTATGCAGATAAATGTTGTTGTGTGAAGCATAGTATAAATGAAAGGTTCTCAATTCACATCCAAAACTGAGGCCACTCTGATTCATTTGCACCCTTGCATTAACCAATGCCGAACGACTCATCCCTTAACTTGCACCCTGATGTACTCGTGGAACACTTTTAACATTTTTCCCAGTTTCTCTTCCTGGTTTTACTGATTCAATGTATTTCAGGAATCATACTGGTGGAGAATTGCTACAGATGGATTCTCAAGCTGCCGGTGATGCTGTTCTGAAGCAACTATGGCATCATACTGATTCAATAATGTGCTGCTCCGTCAAAATGAATGTCAGTAACATCAGCACATGTTGTTTCGACGCTATGCTTTTCTGATAAGAAAGGTTTCTCCACGATTCCTTTTCAAGGGAAATCTGATGATAGCTAAATGGTTTATCTACTTAATGCAGGATTCTGCATTTTTTTCATTTGCAAACCAAGCAGGACTTGACATGCTTGAAACCACTCTAATAGCTCTTCAGGATATAATGCTTGATAAGATCCTAGATGAAGCTGGTCGAAAGGTCCTCCTTTCAGAGTTCCCCAAGATTATGCAGCAGGTTGGATTACCATCTTACTATGTGAATGTTCTAGAATTCTACATTTAATCAAGTCGGATCATCACACGGAGGTTTATGAACACTTGGAAATATGTTATTCAATACTTAAATGAGTTCTAAACATATGCTGCAATGCGTACCTAACCACTCATGTTTCACAAGACTAGGTTTTATTGATTATTAGCAAACAATTTGGTGATTTCTGATACCCTTTGTGCTTGTAGGGCTTTGCTTATCTGCCAGCAGGGCTATGTGTATCGAGCATGGGGAGGCCAGTGTCGTACGAGCAAGCTGTTGCATGGAAGGTCCTTAATGATGACAACTCCAATCACTGCCTAGCTTTCATGTTCACAAACTGGTCTTTTATTTAAGTTCAAAACATATGATCTGCGTA</genome_strand>
        <mrna_strand>CATTGTAGGCTCTGTTCAGAGAGTTGCTATGGCTATTGCACCCTCTCGACTCTGCTCTCAGTTGACACCTAAATCCTTCCCTGGTTCACCAGAAGCTGTCACTTTGGCGAGATGGATTTGCAGGAGCTATAA...................................................................................................................................................................................................................................................................................................GAATCATACTGGTGGAGAATTGCTACAGATGGATTCTCAAGCTGCCGGTGATGCTGTTCTGAAGCAACTATGGCATCATACTGATTCAATAATGTGCTGCTCCGTCAAAATGAAT.......................................................................................................................GATTCTGCATTTTTTTCATTTGCAAACCAAGCAGGACTTGACATGCTTGAAACCACTCTAATAGCTCTTCAGGATATAATGCTTGATAAGATCCTAGATGAAGCTGGTCGAAAGGTCCTCCTTTCAGAGTTCCCCAAGATTATGCAGCAG................................................................................................................................................................................................................................GGCTTTGCTTATCTGCCAGCAGGGCTATGTGTATCGAGCATGGGGAGGCCAGTGTCGTACGAGCGAGCTGTTGCATGGAAGGTCCTTAATGATGACAACTCCAATCACTGCCTAGCTTTCATGTTCACAAACTGGTCTTTTATTTAAGTTCAAAACATATGATCTGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E605239" ref_strand="-" ref_description="SGN-E605239 [21154]">
      <seq>aaaaatggaggaaacagagaacgaatccatcaaatctgcatccgaagagatttccagtgaattcgaaaccctaatcaatgctaaggatttggattctttgaagcaattgcaaaacctcatattgggacggttgcaggacagcaatgcagttctttctcacttcaatgagtattcagaacattgttacgcagaggtctcggcagatttctctagaaatacacgtctcttaaaatctatgaagtcagaccttgattacatatttctgaagttgaggaacatgaaggcaaaaatcatatcaacgtacccagatgctcttccagataatacaactattcaggcacttgatcaaaggcctgatcttgaaatgccacaataagtaagtctggtactgtaaatggtggggaaatgtttggcttcttctatttcttccattgcaaatatggcaaagttggtttagggtagatagagctcaaccgtttttatctgatagttctgcagccgtatatttcaagacgtgttatgataagttgcggtttctcctgaacagtagttctaattcaatttgtgctttgcatgtacctttttggggacaaggcactgatctctttatcataaggattctgagtttccgattattcacaatatctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="61170" stop="65213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61470" g_stop="61589" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61590" i_stop="64205" i_length="2616">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64206" g_stop="64358" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="273" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64359" i_stop="64552" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64553" g_stop="64913" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="635" r_length="362" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E605239" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605239" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61470" e_stop="61589"/>
          <exon e_start="64206" e_stop="64358"/>
          <exon e_start="64553" e_stop="64913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGAGGAAACAGAGAAAGAATCCATCAAATCTGCATCCGAAGAGATTTCCAGTGAATTCAAAACCCTAATCAACGCTAAGGATTTGGATTCTTTGAAGCAATTGCAAAACCTCATGTAATTCTCTTTTTTCTTTTCTCTTGGAACTCATTTGTTGACGGAAACTTTCCTGAGTAATTTCTACTTTAATACTGTTCCCTAGTATGCATTGAATTAAAGGGTCAATTGGGTTTCTTGAATGCTATTTTGTGGAATGTTTGATGTATTTGAAGTTGTATTAACTTTTCATTCTGTTCAGTTCTTAGGGATTGCCTCATCAGGCCCAAGATTGTTTTTTCCTTGATTTAGATAGAGTGATTGGCTTAATATGGTAATTTAGGATACTATATGAGTTGGGTAGTTCCGAAAAAATGTCTGATTGATAAACCAGCCTCCGATCACATAGAAGAGTTCTAGGTGTTGTTGGGAAGGAACTCTAAAATGGCTTTCTTTTTACTTGATTTTAAATTATGGGGTTCCTTTATTTTTGCTGAGTCAAACCAGTTTGGATAATTAAGATAAGAAGTGTTCAGTTTAAGATGGAAATGAGAGGATATGTTGTATGTGATTGACTGATGGATTTGTGTGTCCTCTTTTTTGGAAACCAGAACGTGAATGCATGTATGAGCTCTAATATTAGTTTCATAACTTAGTTGATGTTAGGATTAAATGATGACATTTACTTTTTAGAATTTACTGACTCGCAGAGCCTCGCCTGATAGCCAATATTTTTTGCTTATGTTTAGCTCTCTTTTGTTTTGTTTAGAGCTAAGTTGGTCGGACTCGGGCGCGGATGTAGAGGTTGGATCCTTCATGATCTAATTTTTGAGATTCGGGGATATGGATATGGGTGCAAGGATTCGCCTAAAACTAATTAAAATATCTAACGATAGAGCTATAATACCTAAATTATGAGATACTATATGGAGAACTTGAGGAGAATCCAGGAGATTAAAGGAAAATGAGTGACATAGAAATTCCTATATAAAAAGGTATTCCATTTCTTGAATTTCACCTTAGTTTTTGTATTGGTTAAAGAAACCATTAGAACTGTTTCCTCATCGATTTTGGTCAAAGTACCCAAAATCGGTTGACCAAATCGGACACGGATCCCACACCCATGTCGTGTCGACAGGGGTGAGGCACCAAAAGTGAAGAGTTTGAGCAATTTAGGTTTAGAGTATGCTGTAATGGAGCTTTCCTTTTTTATCTTTTCATCTTCTTGATGCCAGCAATACAACATCTTACTTCTACCAACAAAATCATGTTTGGGTTTCCAAATTCCTTTGGCACTACATCAGTGAATGTGTAGTGGGTGCGGTAGCATTTCCAAAAGTCAAAGTCTCCTTTGTTGCAAAAAAATAACTTATAATAGTTGTTGAGTCTAGTTGTAAATCAATTGTTTTATATGTAAGCAATTAGACCCGGGTATGGCCAATTCTCTCTCCTTCTATGATTAGCCAAGCTGTTAAAATTAGGATTTGGGAGCTGTATAGTGAATTAATGATACCAATCTTTGAATGCACTTAAGAGTTTAGATTGTCTATTGTATCTGATCTAGGTTAAAGATCATCTGGTCCTTATTTTTACATGCCAAAGCTCTTCGTGCATCAAGAGTTTGGATTATGAAAGTGTCTCTTTGAGATATGTTGGCTAACAATTGCCAAGTCTCGGAACATTCGGTACGCATTGTGAGACTACTTTGGGTTTTGTATATTGAACTTGTAAAATTCCCTCTTTGAGTATGTAAAATTTGTTGCAATTACCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATATGTGGCTTAGGTCGCAGGTTCAAGCCCCGCACCACGCAAAGTGAAGCTTGGTATTTAAGTGGAGAAGGGTAGAGGACAGACCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGGTGGGTCACATACGGATTTCTTGGTTATCCAAAAAAAAGAATTGTTCCGATCTATCCATTACAACAACATAAATCATCAAAAAGCTCATATATATCATATGATTGGGGTCTAAACCCCTTAGATCAGAAAGAAAGTTCCATACAGCAGTATCAGAATTTAGCAACCTTGTGATTAAGAATGAGAAAATATATGGGAACCAAAAGATCACCTGCTTAGTGATCTCTTCTAGTGTTCTCATTTGATTGGAGAAATTTCTTTAAGAAATTTCCCTTAAGAAGCTTTATTTCAGTCACTTATCAGGGGAAAAAGAAGAAGAAAAAACGATTCGAGAGAATTTTTGTTAGTGTAAAGTTCACATAAGGAACTCCTAAAAAAGTTGCTTCCTGGAAGATCATAAAGTACCTAATGTCTTGTTTAGGGCTCTGACTTTTGGTTGAGTTTCGGTTGTTTCTCTATGAAGTCACCCATATGCTACATTCAGAACTTGCTCAAAGCGTTTGAAATCATGATTTTTCATCTGAGCACTAATACTGTTATGATTAGAATGTGGTCATAAATATCAGCCCCTTCCTGAACTCTTCGATGCTTCCGCCTCCTTCAAACTTAGCTTTTTCCACCCTTGTGATTGCTTTTTGTCATAATTCTTGGAAGTGTTTTTTTACCATGTGATATATAGGTTCGTTCAGTCATTTTTGTTCATTGTCTTATTGTCATTCTTGGTGCCTTTTTTCATGATTAACTTATGTCTTGTATGCTCAAACTGCAGATTGGGACGGTTGCAGGACAGCAATGCAGTCCTTTCTCACTTCAATGAGTACTCAGAACATTGTTACGCAGAGGTCTCGGCAGATTTCTCTAGAAATACACGTCTCTTAAAATCTATGAAGTCAGACCTTGATTACATATTTCTGAAGTTGAGGTATGATATTTCTTTTCTTCCCTTGTGTTATTCTTTTCTTTCTGAATTTCAATATCAGTTTTCAATATTGTAATGTTACATAGAGATACCCGGGCATTCTTAGACTACTGGCTCTACTCCCAAAATCGGGCAACCTCTTTGTTTAGTGGTTAATCATTTTCTATTACTTCTAAATGTTTGTTTTCCGTTTTCAGGAACATGAAGGCAAAAATCATATCAACGTACCCAGATGCTCTTCCAGACAATACAACTATTCAGGCACTTGATCAAAGGCCTGATCTTGAAATGCCACAATAAGTAAGTTTGGTAATGTAAATGGTGGGGAAATGTTTGGCTTCTTCTATTTCTTCCTTTGCAAGTATGGAAAAGCTGGTTTAGGGTGGATAG-TCTCAACTGTTTTTATCTGATAGTTCTGCAGCTGTATACTTCAAGTCGCGTTATGATAAGTTGTGGTCTCTCCTGAACAGTAGTTGTGCTTCGATTTGTGCTTTGCATATACCTTTTCGGGGGCAAGGCATGGATCTGTTTATCGTAAGGATTCTGAGTTTTCGATTA</genome_strand>
        <mrna_strand>AAAAATGGAGGAAACAGAGAACGAATCCATCAAATCTGCATCCGAAGAGATTTCCAGTGAATTCGAAACCCTAATCAATGCTAAGGATTTGGATTCTTTGAAGCAATTGCAAAACCTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGACGGTTGCAGGACAGCAATGCAGTTCTTTCTCACTTCAATGAGTATTCAGAACATTGTTACGCAGAGGTCTCGGCAGATTTCTCTAGAAATACACGTCTCTTAAAATCTATGAAGTCAGACCTTGATTACATATTTCTGAAGTTGAG..................................................................................................................................................................................................GAACATGAAGGCAAAAATCATATCAACGTACCCAGATGCTCTTCCAGATAATACAACTATTCAGGCACTTGATCAAAGGCCTGATCTTGAAATGCCACAATAAGTAAGTCTGGTACTGTAAATGGTGGGGAAATGTTTGGCTTCTTCTATTTCTTCCATTGCAAATATGGCAAAGTTGGTTTAGGGTAGATAGAGCTCAACCGTTTTTATCTGATAGTTCTGCAGCCGTATATTTCAAGACGTGTTATGATAAGTTGCGGTTTCTCCTGAACAGTAGTTCTAATTCAATTTGTGCTTTGCATGTACCTTTTTGGGGACAAGGCACTGATCTCTTTATCATAAGGATTCTGAGTTTCCGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E605153" ref_strand="-" ref_description="SGN-E605153 [21066]">
      <seq>aaaaatggaggaaacagagaacgaatccatcaaatctgcattgcgaagagatttccagtgaattcaaaaccctaatcaatgctaaggatttggattctttgaagcaattgcaaaacctcatattgggacggttgcaggacagcaatgcagttctttctcacttcaatgagtattcagaacattgttacgcagaggtctcggcagatttctctagaaatacacgtctcttaaaatctatgaagtcagaccttgattacatatttctgaagttgaggaacatgaaggcaaaaatcatatcaacgtacccagatgctcttccagataatacaactattcaggcacttgatcaaaggcctgatcttgaaatgccacaataagtaagtctggtactgtaaatggtggggaaatgtttggcttcttctatttcttccattgcaaatatggaaaagttggtttagggtagatagagctcaaccgtttttatctgatagttctgcagctgtatatttcaagacgtgttatgataagttgcggtttctcctgaacagtagttctaattcaatttgtgctttgcatgtacctttttggggacaaggcactgatctctttatcataaggattctgagtttccgaatttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="61170" stop="65216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61470" g_stop="61589" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61590" i_stop="64205" i_length="2616">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64206" g_stop="64358" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="274" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64359" i_stop="64552" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64553" g_stop="64909" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="632" r_length="358" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="653"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E605153" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605153" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61470" e_stop="61589"/>
          <exon e_start="64206" e_stop="64358"/>
          <exon e_start="64553" e_stop="64909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGAGGAAACAGAGAAAGAATCCATCAAATCTGCA-TCCGAAGAGATTTCCAGTGAATTCAAAACCCTAATCAACGCTAAGGATTTGGATTCTTTGAAGCAATTGCAAAACCTCATGTAATTCTCTTTTTTCTTTTCTCTTGGAACTCATTTGTTGACGGAAACTTTCCTGAGTAATTTCTACTTTAATACTGTTCCCTAGTATGCATTGAATTAAAGGGTCAATTGGGTTTCTTGAATGCTATTTTGTGGAATGTTTGATGTATTTGAAGTTGTATTAACTTTTCATTCTGTTCAGTTCTTAGGGATTGCCTCATCAGGCCCAAGATTGTTTTTTCCTTGATTTAGATAGAGTGATTGGCTTAATATGGTAATTTAGGATACTATATGAGTTGGGTAGTTCCGAAAAAATGTCTGATTGATAAACCAGCCTCCGATCACATAGAAGAGTTCTAGGTGTTGTTGGGAAGGAACTCTAAAATGGCTTTCTTTTTACTTGATTTTAAATTATGGGGTTCCTTTATTTTTGCTGAGTCAAACCAGTTTGGATAATTAAGATAAGAAGTGTTCAGTTTAAGATGGAAATGAGAGGATATGTTGTATGTGATTGACTGATGGATTTGTGTGTCCTCTTTTTTGGAAACCAGAACGTGAATGCATGTATGAGCTCTAATATTAGTTTCATAACTTAGTTGATGTTAGGATTAAATGATGACATTTACTTTTTAGAATTTACTGACTCGCAGAGCCTCGCCTGATAGCCAATATTTTTTGCTTATGTTTAGCTCTCTTTTGTTTTGTTTAGAGCTAAGTTGGTCGGACTCGGGCGCGGATGTAGAGGTTGGATCCTTCATGATCTAATTTTTGAGATTCGGGGATATGGATATGGGTGCAAGGATTCGCCTAAAACTAATTAAAATATCTAACGATAGAGCTATAATACCTAAATTATGAGATACTATATGGAGAACTTGAGGAGAATCCAGGAGATTAAAGGAAAATGAGTGACATAGAAATTCCTATATAAAAAGGTATTCCATTTCTTGAATTTCACCTTAGTTTTTGTATTGGTTAAAGAAACCATTAGAACTGTTTCCTCATCGATTTTGGTCAAAGTACCCAAAATCGGTTGACCAAATCGGACACGGATCCCACACCCATGTCGTGTCGACAGGGGTGAGGCACCAAAAGTGAAGAGTTTGAGCAATTTAGGTTTAGAGTATGCTGTAATGGAGCTTTCCTTTTTTATCTTTTCATCTTCTTGATGCCAGCAATACAACATCTTACTTCTACCAACAAAATCATGTTTGGGTTTCCAAATTCCTTTGGCACTACATCAGTGAATGTGTAGTGGGTGCGGTAGCATTTCCAAAAGTCAAAGTCTCCTTTGTTGCAAAAAAATAACTTATAATAGTTGTTGAGTCTAGTTGTAAATCAATTGTTTTATATGTAAGCAATTAGACCCGGGTATGGCCAATTCTCTCTCCTTCTATGATTAGCCAAGCTGTTAAAATTAGGATTTGGGAGCTGTATAGTGAATTAATGATACCAATCTTTGAATGCACTTAAGAGTTTAGATTGTCTATTGTATCTGATCTAGGTTAAAGATCATCTGGTCCTTATTTTTACATGCCAAAGCTCTTCGTGCATCAAGAGTTTGGATTATGAAAGTGTCTCTTTGAGATATGTTGGCTAACAATTGCCAAGTCTCGGAACATTCGGTACGCATTGTGAGACTACTTTGGGTTTTGTATATTGAACTTGTAAAATTCCCTCTTTGAGTATGTAAAATTTGTTGCAATTACCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATATGTGGCTTAGGTCGCAGGTTCAAGCCCCGCACCACGCAAAGTGAAGCTTGGTATTTAAGTGGAGAAGGGTAGAGGACAGACCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGGTGGGTCACATACGGATTTCTTGGTTATCCAAAAAAAAGAATTGTTCCGATCTATCCATTACAACAACATAAATCATCAAAAAGCTCATATATATCATATGATTGGGGTCTAAACCCCTTAGATCAGAAAGAAAGTTCCATACAGCAGTATCAGAATTTAGCAACCTTGTGATTAAGAATGAGAAAATATATGGGAACCAAAAGATCACCTGCTTAGTGATCTCTTCTAGTGTTCTCATTTGATTGGAGAAATTTCTTTAAGAAATTTCCCTTAAGAAGCTTTATTTCAGTCACTTATCAGGGGAAAAAGAAGAAGAAAAAACGATTCGAGAGAATTTTTGTTAGTGTAAAGTTCACATAAGGAACTCCTAAAAAAGTTGCTTCCTGGAAGATCATAAAGTACCTAATGTCTTGTTTAGGGCTCTGACTTTTGGTTGAGTTTCGGTTGTTTCTCTATGAAGTCACCCATATGCTACATTCAGAACTTGCTCAAAGCGTTTGAAATCATGATTTTTCATCTGAGCACTAATACTGTTATGATTAGAATGTGGTCATAAATATCAGCCCCTTCCTGAACTCTTCGATGCTTCCGCCTCCTTCAAACTTAGCTTTTTCCACCCTTGTGATTGCTTTTTGTCATAATTCTTGGAAGTGTTTTTTTACCATGTGATATATAGGTTCGTTCAGTCATTTTTGTTCATTGTCTTATTGTCATTCTTGGTGCCTTTTTTCATGATTAACTTATGTCTTGTATGCTCAAACTGCAGATTGGGACGGTTGCAGGACAGCAATGCAGTCCTTTCTCACTTCAATGAGTACTCAGAACATTGTTACGCAGAGGTCTCGGCAGATTTCTCTAGAAATACACGTCTCTTAAAATCTATGAAGTCAGACCTTGATTACATATTTCTGAAGTTGAGGTATGATATTTCTTTTCTTCCCTTGTGTTATTCTTTTCTTTCTGAATTTCAATATCAGTTTTCAATATTGTAATGTTACATAGAGATACCCGGGCATTCTTAGACTACTGGCTCTACTCCCAAAATCGGGCAACCTCTTTGTTTAGTGGTTAATCATTTTCTATTACTTCTAAATGTTTGTTTTCCGTTTTCAGGAACATGAAGGCAAAAATCATATCAACGTACCCAGATGCTCTTCCAGACAATACAACTATTCAGGCACTTGATCAAAGGCCTGATCTTGAAATGCCACAATAAGTAAGTTTGGTAATGTAAATGGTGGGGAAATGTTTGGCTTCTTCTATTTCTTCCTTTGCAAGTATGGAAAAGCTGGTTTAGGGTGGATAG-TCTCAACTGTTTTTATCTGATAGTTCTGCAGCTGTATACTTCAAGTCGCGTTATGATAAGTTGTGGTCTCTCCTGAACAGTAGTTGTGCTTCGATTTGTGCTTTGCATATACCTTTTCGGGGGCAAGGCATGGATCTGTTTATCGTAAGGATTCTGAGTTTTCG</genome_strand>
        <mrna_strand>AAAAATGGAGGAAACAGAGAACGAATCCATCAAATCTGCATTGCGAAGAGATTTCCAGTGAATTCAAAACCCTAATCAATGCTAAGGATTTGGATTCTTTGAAGCAATTGCAAAACCTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGACGGTTGCAGGACAGCAATGCAGTTCTTTCTCACTTCAATGAGTATTCAGAACATTGTTACGCAGAGGTCTCGGCAGATTTCTCTAGAAATACACGTCTCTTAAAATCTATGAAGTCAGACCTTGATTACATATTTCTGAAGTTGAG..................................................................................................................................................................................................GAACATGAAGGCAAAAATCATATCAACGTACCCAGATGCTCTTCCAGATAATACAACTATTCAGGCACTTGATCAAAGGCCTGATCTTGAAATGCCACAATAAGTAAGTCTGGTACTGTAAATGGTGGGGAAATGTTTGGCTTCTTCTATTTCTTCCATTGCAAATATGGAAAAGTTGGTTTAGGGTAGATAGAGCTCAACCGTTTTTATCTGATAGTTCTGCAGCTGTATATTTCAAGACGTGTTATGATAAGTTGCGGTTTCTCCTGAACAGTAGTTCTAATTCAATTTGTGCTTTGCATGTACCTTTTTGGGGACAAGGCACTGATCTCTTTATCATAAGGATTCTGAGTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239389" ref_strand="-" ref_description="SGN-E239389 [cLEL-9-O1](-)">
      <seq>tttttttttttttttttgaaccaacggtaaaacaataattctctaatatcttgcattacaacgaaaactaggacccaaaccaatttccctcagagtaataatgtcaagtttttcgatacatagctttgtgtaaacttgagacgataggtacaaggagatgtatcacgtaaggcacgctaaacaagcttgcaaaattacagtcccggttaaaaaataaagagaagttacatttggacaataactgtttggtcaaaagccaggaatttctcctggcatgggagctaattcgttattgccaaacctctccttgtcgtagaaacaggcatgaacaatcctaccgccaaaaaatcgaccttcaagttctataagggctttagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="77025" stop="92775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85631" g_stop="85647" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85648" i_stop="92111" i_length="6464">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92112" g_stop="92475" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="379" r_length="362" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E239389" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239389" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85631" e_stop="85647"/>
          <exon e_start="92112" e_stop="92475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTTACTTATATCTTTTTACTTGTTCATTTTGACAAATTAAAAAAAAATATTTTTTTTACCTATTACATTTTTAGTTAATTAATTAATTTTTTAAAAATAAGTCTTTTTTAAAGTCTTAAATTTTTAGTTCATTAGCTTCATAATTAATATGGGTGATTTATTATGTCAATCATTATTTATTTTAATAGATTTTCTCTCCCTCTATTCCTTTTTATATCTCATACTTATTATAAATAGTTGGTTCATAATATTTACCATTTCATAAATTAATACATAATTTACAATATTATTCCTATTTTACCTTTATGAATTATGTAGCCTTGAGAATATACAGTTGACTAATATAGAAAAACTAAATAATGATTTATGTTCATTGATTAAATTAATTAATGAGAAAAGACATAAAGTCATTACTGAAATTGTCTTGAATTTTCAAAAAGACACTTTATCTTTGTGGGTGTCCTACTTCTGGATTGAACAGTTTAAGAGTGTTATAAATGTCTATTTTTTTTACCCAACCCCAATTGCTAGAAAAAAGGTGCAATCACGCACCAATAGTTGTTTGACACATATTAAGTTTTTTAATTTTTAATTTTATTTTTCAGTTTCATTTTATTATATATATTTTTATTAATTTATTTTCATTTTTTCCTCTTTCTCCTTAAATTACTCAAATCCTTTGTTCTTTGTTGTAAATCCTACAAAAGTAGCAGCCATAGTCACCTTCAATGTAGTCTCTATGATGCTTCCATGTTACAACACTATTTTCGTCACCAAAACATTACTAAATAAAATTAATTCAACTCTCAAGTTACTAAAGCAAGGTAATGAGACCAGAAAAAAAAAAAGAAACAAAGAAAAGCAAGAGACGAGAAATAAAAAGGATAAAAATGGATGAAGTAAGTAGATCTTCTAAGTTGAAGAAGATGAAGAAAAGGTAATTGGATTTTTAAATTTGGGTGAAGAAGATAATGGAGAAGATGATGTAAATTAATTAAATAATTAATATTAAAGAAATATAATGACACGTCGCACTTTATAACTGATTATGGTAGTGGAAAGACTGAGTCACGCGCCCCATTTGCGTGGTAACAATCCAGACGAGAAAATGGGTCAAAGTGACCCATTTACAAAGATATTAATTAGTTCGGGTGATAGGATAATTTTAAAAGTAAACATGTAATTTACAAAGTGACCCTCAGTTTGACTCATCAATTATTTTTCTAAAATACATGTTTACTTTTATTTGTTATTTTTGACATATCAAAAAGGGAAATTTTTCAAAATGTCAATATTTTAGCATTTAAGAGGACTCATTAGCAACAACTTCAATATTTAGTAAAAATGTCATTTTAGTTTGTTATATATGTTTTTATTATTTATTTTTATTTAAAGAATATAATTATTTAATAAGAGAAAATTAAGGGGGGAATATTTCAAAAAAAAAGGCAAGCATCCTTAATTTTCTCATCAGTTACATTTTCAAATAAAATTTAAATTTTATTTTTTTTTCTCCAGAATTTTTACCTTTTTAAATTATATTCATTCCACAATATATTCTATTTATATTTATTATAGTTTTTTATTAGTTTGTATTCATTCCAATAGGTATGCCGAATTTATCTATATAGTCATTTAAAAAATATATTTGTATTTTCATATATTTTTTTCCCTATATAGTTATTTTTTTCTTCAAAAATCCTGTATGTATTAATTTCAATATGTATTTTATTTGTATTTCTATTTATTCTAGTTTTTATTTAGAATTTTGTATAATAATATATAAAATACAAAAAATTAGTATGATGAAAAAGTGAATGAAATATAAAATTGAAAAGAAATAATTGAATATTTGGTGTACTCATTCTTAAATAAAATACATAACTAGTTGACATATCTTTAGAATAAATACAAATTAGAAAAAAATGTCACATTCAGTTGACATACCTTTATTAGTTTGTATTCATTCCAATATGTATGTCAAATAAAATATAGTTATTTAAGAAATACATTTGTATTCGTATATATTTTTCACTGTGTATTTATTTTTCTTTTCAAGATCTTGTTTCCCTTTCTAAGTCGTATTCATTCCAATATGTCTATTATTTGTATTTGTATTCGAATACAAATAAACTAGTTGACATACATTTGGATGAATACAAATTAGGGACAAATACAAGATTCATAAACCATGCAACATGAAATTTTTAATAAATACAAATATTGATAGTATACATAGTGATTTGAATACAAATTAAGAAAGCATACCAAATTCTAAAAAAGAACTATAAATACAAAACAAACTAATAGAAAATTGTTCGCGATCTTCGTCGTTTTTTTCAAGATCCTCACGAGTAGACAAAGATTCTACATTTGTGTTTTAAATTTGAGGAAGGTTTTGCACACCAATGAGTCTTGTAAATGTTCTTACCCTCTTTCTTCCCTTATTTTAGCAGCGGATCATACATTATACACTATTTGTTAAATAATAAATAAATTAAAGGATGAAAAATCACCAGAAATTGGTTGATTAAGATGAATACCTCTAGTAAGTCTCTTGGATTCAGCCATTGGAGAGTAAATCATAACGGAAGTTGAAAAATACAAATAACATTTTTTTAATATTTAAACAAAAATAAAATTGGAAAAGAAATCTGAAAATAGGATAAAGATTAGAGATACCTTAATCAAAGGGATTCTTGTTGATTCAATTTTGGATTAAAAAAACAATCAAAATATATGGCAAAAAGATATTTGCAACTTGAATGTTGGAGGAAAATCATAAAAGATAACCATGAGAGAGAGAAAATTAAATGGGAGAGAGAATTAACAATTTGAAAAGATAAATATGAGAGAGAATAATTTTTTTAAAAAAAAAAAGGATATATAGAATTAATTGAAAAAGAGAGATAAAATAGGAAGAAAATTGAAACACGTAAATTTTTTAAAATAATGACATTTTTGACATTATTGCTAATATTTATAAAATATGGATATTTTTATTAAATATGTTATTTATTTTGACTAGTTTACTAATTTTTCCTATCAAAAAAGAATAATAATTTTTTTCATATGTTACTCTCGACATTAAATACGTATTTTTCAAATTACTTTGAACATATTAAGAAGGGATAATAATTTTTTTCATATTTACCGTCTATATTAAATATTTATTTTTCATATTTTAAGACATCACTTAAAATGAGTATGTCAAGTAGAAAGTAACTTTTATACTTTCATTTGTATTAAACTAGTTAACATATCCGCACTTCGGGCGGACCTTATTAGATTTATAAATAATTTTTTTCGCTTAAATATATTGAGTCGAATATTATTATCATTGAACCTAATAAATTATATTTCTGTCTTACTTCAAAAATGTTTTCTTCCCGGAAAACAATTTTTCCATATTTATACTTTTTTCTTTTTGTGCTCCCTCTACTCATCATTTATTTTTCTAAATATATTTTAGTTTTACTTATTATTTTTGATATATCAAGAAAGAATAATAATTTTTTTTCATATTTTACCCTCGATATTAAATACGTATTATTCAAATTACTTCAAACATATCAAGAAGGGGTGATAATCTTTTCCATATTTACCGTTTATATTAAATACTTATTTTCCATATTTTAAGACATCATTTAAAATGGATATGTGAAGTCGAAAAAGTAATTTTTATACTTTCATTTATATTGAATTTCCATATGTAGTTTAGTTGTTTAAAATCATATAAAAATTTATGATTCTTTTACAATATTTTTCTTTATCATCTAATTTATCCCAGTTTTAAATTTTATTTATTCACTTCCCTTATAAGTCCAATTTGTAAATGTGAACGAAAATCTAAAAGTGGAATGACCCATTTTATGAAATTGTGTAGAAAATGCTCTGTCAATGCCATTACTCTTCCCACTATCTAAAGTCCAAATTTTGTAAAACTCTTTGTATTTTCCATTCAACAACTACTTTTTTTCCCCCACAATTATAAATAACCCATATTCATGCAAATTTATAGTATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAAAGATGTTGAACTGTTGATTAACAATGGCGTGGGACACAGTTTTTACCTGAACAAAATTGCTGTTGATATGGACCCTGTTACTGGTTCTGCAACTGAAAAGCTTTTTGAAGCCATTGCAGAGTTCATCAACAAGCACTGATCAAATGAGAAATTAATTTACTATAAGATTTATGAGTGCAAATAAGCATGATATTTTATGAGAATTTTTTTGCATGCTGAACATCTGAAACGATTGTATCGTATTGTTAGTTTAAATATTCATGTTTGTTTTGATGATTGTTATTTTAACTATATTGTATCCAATTATAAAATATTAAAATTTCATAATAATCGATATGATCGGACTACATCTTTATCATAATATCTTTCTTCTCGTTATGGATTTACTTATCATTTAATAATTCAATTTTTGTTGTTTAGTATGTCTTTATTTAGTGTAGTAGGTTATGTTTATCTTGTATAGTATATTATTTTTTGAAGTGTATTATTTAAATTATTAATATGTGATCTAATATAATAACGAAAAATCATACTATCTATTCAAATAGTTACATTCATTAAAACAATATGCAACTTTTTTTTAGTGTTATTTTAAATCATTAAATTCTTTTACCATAATGTAATAGTAAATAAATAGTTATATTTATTAAAACAATATTTACTTCATATCCAACTTTTTGAGAAGTGTTTTTCTTTTTATTCATTAAGAAATTTTACCATAATGCAAATTTCTTCTGCCATACTATTGGGGCAATGATACCCCTGCTATATAAAAGCTAGAGCATATACACCCTCTACTTTAACAGAAGACTAATAGGGATACATAACACAATCTTATCTGTCATCAGATATTTAATTAGTGGATAAAATTACGACAATATATATCCGTTAGTATAAAGGACGTATATGCTTTAGTTTTTGGACGGCATGAACATCAATGTTCAAAAAATATGACGAAAAATATTTGCTCACTATTTCCAATAGTACAGGGATATATTTGTCCTCTTTTCCCTTTAAATTAAGTCGATCTCAATCCATTTGATTTTTTTTTTTTAATTGACCACAATGTAATCTCCAATTTTAATTCATTTTAAGACTCTTTTTTAACATTGGTGGAATATATATGTTTATATTGAAGGTATAAATTACTATTTCCTTTATATCTTCTAGATTACATCATTGATAAGACTATATACCAACTTCCACATTACAGAGAACTACAGATGTTTTTTAGTATGGTGGAGATATGTAGTGTGTTCCCCTTTTTAGCAACACATTGATTATCTTTTTTAAAAAAAGAATAGTCATTACAAGCCACTCAAGTTTATCACTTCAAAAAACAATCTCAGATCTTCCTGCCACCAAAAAAGTAAAATAAAAATCGATTACTTGTAAGTTGCAACACACAGAACTTCAAAATTTATGTACACTTAATAATAATGTATAAAGTTCAGGTGGTGTGCATCGAATAAACCTTATATATATACTAATATATGAAAAAGTTAAGACAGTAATGAACCAACGGTAAAACAATAATTCTCTAATATCTTGCATTACAATGAAAACTAAGGACCCAAACCAATTTCCCTCAAGAGTAATAATGTGAAGTTTTTCGATACATAGCTTTGTGTAAACTTGAGACGATAGGTACAAGGAGATGTATCACGTAAGGCACGCTAAACAAGCTTGCAAAATTACAGTCCCGGTTAAAAAATAAAGAGAAGTTACATTTGGACAATAACTGTTTGGTCAAAAGCCAGGAATTTCTCCTGGCATGGGAGCTAATTCGTTATTGCCAAACCTCTCCTCGTCGTAGAAACAGGCATGAACAATCCTACCGCCAAAAAATCGACCTTCAAGTTCTATAAGGGCTTTAGTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCAACGGTAAAACAATAATTCTCTAATATCTTGCATTACAACGAAAACT-AGGACCCAAACCAATTTCCCTC-AGAGTAATAATGTCAAGTTTTTCGATACATAGCTTTGTGTAAACTTGAGACGATAGGTACAAGGAGATGTATCACGTAAGGCACGCTAAACAAGCTTGCAAAATTACAGTCCCGGTTAAAAAATAAAGAGAAGTTACATTTGGACAATAACTGTTTGGTCAAAAGCCAGGAATTTCTCCTGGCATGGGAGCTAATTCGTTATTGCCAAACCTCTCCTTGTCGTAGAAACAGGCATGAACAATCCTACCGCCAAAAAATCGACCTTCAAGTTCTATAAGGGCTTTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238903" ref_strand="-" ref_description="SGN-E238903 [cLEL-9-O1](-)">
      <seq>tttttttttttttttttgaaccaacggtaaaacaataattctctaatatcttgcattacaacgaaaactaggacccaaaccaatttccctcagagtaataatgtcaagtttttcgatacatagctttgtgtaaacttgagacgataggtacaaggagatgtatcacgtaaggcacgctaaacaagcttgcaaaattacagtcccggttaaaaaataaagagaagttacatttggacaataactgtttggtcaaaagccaggaatttctcctggcatgggagctaattcgttattgccaaacctctcctcgtcgtagaaacaggcatgaacaatcctaccgccaaaaaatcgacctttaagttctataagggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="77025" stop="92771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85631" g_stop="85647" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85648" i_stop="92111" i_length="6464">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92112" g_stop="92471" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="375" r_length="358" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E238903" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238903" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85631" e_stop="85647"/>
          <exon e_start="92112" e_stop="92471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTTACTTATATCTTTTTACTTGTTCATTTTGACAAATTAAAAAAAAATATTTTTTTTACCTATTACATTTTTAGTTAATTAATTAATTTTTTAAAAATAAGTCTTTTTTAAAGTCTTAAATTTTTAGTTCATTAGCTTCATAATTAATATGGGTGATTTATTATGTCAATCATTATTTATTTTAATAGATTTTCTCTCCCTCTATTCCTTTTTATATCTCATACTTATTATAAATAGTTGGTTCATAATATTTACCATTTCATAAATTAATACATAATTTACAATATTATTCCTATTTTACCTTTATGAATTATGTAGCCTTGAGAATATACAGTTGACTAATATAGAAAAACTAAATAATGATTTATGTTCATTGATTAAATTAATTAATGAGAAAAGACATAAAGTCATTACTGAAATTGTCTTGAATTTTCAAAAAGACACTTTATCTTTGTGGGTGTCCTACTTCTGGATTGAACAGTTTAAGAGTGTTATAAATGTCTATTTTTTTTACCCAACCCCAATTGCTAGAAAAAAGGTGCAATCACGCACCAATAGTTGTTTGACACATATTAAGTTTTTTAATTTTTAATTTTATTTTTCAGTTTCATTTTATTATATATATTTTTATTAATTTATTTTCATTTTTTCCTCTTTCTCCTTAAATTACTCAAATCCTTTGTTCTTTGTTGTAAATCCTACAAAAGTAGCAGCCATAGTCACCTTCAATGTAGTCTCTATGATGCTTCCATGTTACAACACTATTTTCGTCACCAAAACATTACTAAATAAAATTAATTCAACTCTCAAGTTACTAAAGCAAGGTAATGAGACCAGAAAAAAAAAAAGAAACAAAGAAAAGCAAGAGACGAGAAATAAAAAGGATAAAAATGGATGAAGTAAGTAGATCTTCTAAGTTGAAGAAGATGAAGAAAAGGTAATTGGATTTTTAAATTTGGGTGAAGAAGATAATGGAGAAGATGATGTAAATTAATTAAATAATTAATATTAAAGAAATATAATGACACGTCGCACTTTATAACTGATTATGGTAGTGGAAAGACTGAGTCACGCGCCCCATTTGCGTGGTAACAATCCAGACGAGAAAATGGGTCAAAGTGACCCATTTACAAAGATATTAATTAGTTCGGGTGATAGGATAATTTTAAAAGTAAACATGTAATTTACAAAGTGACCCTCAGTTTGACTCATCAATTATTTTTCTAAAATACATGTTTACTTTTATTTGTTATTTTTGACATATCAAAAAGGGAAATTTTTCAAAATGTCAATATTTTAGCATTTAAGAGGACTCATTAGCAACAACTTCAATATTTAGTAAAAATGTCATTTTAGTTTGTTATATATGTTTTTATTATTTATTTTTATTTAAAGAATATAATTATTTAATAAGAGAAAATTAAGGGGGGAATATTTCAAAAAAAAAGGCAAGCATCCTTAATTTTCTCATCAGTTACATTTTCAAATAAAATTTAAATTTTATTTTTTTTTCTCCAGAATTTTTACCTTTTTAAATTATATTCATTCCACAATATATTCTATTTATATTTATTATAGTTTTTTATTAGTTTGTATTCATTCCAATAGGTATGCCGAATTTATCTATATAGTCATTTAAAAAATATATTTGTATTTTCATATATTTTTTTCCCTATATAGTTATTTTTTTCTTCAAAAATCCTGTATGTATTAATTTCAATATGTATTTTATTTGTATTTCTATTTATTCTAGTTTTTATTTAGAATTTTGTATAATAATATATAAAATACAAAAAATTAGTATGATGAAAAAGTGAATGAAATATAAAATTGAAAAGAAATAATTGAATATTTGGTGTACTCATTCTTAAATAAAATACATAACTAGTTGACATATCTTTAGAATAAATACAAATTAGAAAAAAATGTCACATTCAGTTGACATACCTTTATTAGTTTGTATTCATTCCAATATGTATGTCAAATAAAATATAGTTATTTAAGAAATACATTTGTATTCGTATATATTTTTCACTGTGTATTTATTTTTCTTTTCAAGATCTTGTTTCCCTTTCTAAGTCGTATTCATTCCAATATGTCTATTATTTGTATTTGTATTCGAATACAAATAAACTAGTTGACATACATTTGGATGAATACAAATTAGGGACAAATACAAGATTCATAAACCATGCAACATGAAATTTTTAATAAATACAAATATTGATAGTATACATAGTGATTTGAATACAAATTAAGAAAGCATACCAAATTCTAAAAAAGAACTATAAATACAAAACAAACTAATAGAAAATTGTTCGCGATCTTCGTCGTTTTTTTCAAGATCCTCACGAGTAGACAAAGATTCTACATTTGTGTTTTAAATTTGAGGAAGGTTTTGCACACCAATGAGTCTTGTAAATGTTCTTACCCTCTTTCTTCCCTTATTTTAGCAGCGGATCATACATTATACACTATTTGTTAAATAATAAATAAATTAAAGGATGAAAAATCACCAGAAATTGGTTGATTAAGATGAATACCTCTAGTAAGTCTCTTGGATTCAGCCATTGGAGAGTAAATCATAACGGAAGTTGAAAAATACAAATAACATTTTTTTAATATTTAAACAAAAATAAAATTGGAAAAGAAATCTGAAAATAGGATAAAGATTAGAGATACCTTAATCAAAGGGATTCTTGTTGATTCAATTTTGGATTAAAAAAACAATCAAAATATATGGCAAAAAGATATTTGCAACTTGAATGTTGGAGGAAAATCATAAAAGATAACCATGAGAGAGAGAAAATTAAATGGGAGAGAGAATTAACAATTTGAAAAGATAAATATGAGAGAGAATAATTTTTTTAAAAAAAAAAAGGATATATAGAATTAATTGAAAAAGAGAGATAAAATAGGAAGAAAATTGAAACACGTAAATTTTTTAAAATAATGACATTTTTGACATTATTGCTAATATTTATAAAATATGGATATTTTTATTAAATATGTTATTTATTTTGACTAGTTTACTAATTTTTCCTATCAAAAAAGAATAATAATTTTTTTCATATGTTACTCTCGACATTAAATACGTATTTTTCAAATTACTTTGAACATATTAAGAAGGGATAATAATTTTTTTCATATTTACCGTCTATATTAAATATTTATTTTTCATATTTTAAGACATCACTTAAAATGAGTATGTCAAGTAGAAAGTAACTTTTATACTTTCATTTGTATTAAACTAGTTAACATATCCGCACTTCGGGCGGACCTTATTAGATTTATAAATAATTTTTTTCGCTTAAATATATTGAGTCGAATATTATTATCATTGAACCTAATAAATTATATTTCTGTCTTACTTCAAAAATGTTTTCTTCCCGGAAAACAATTTTTCCATATTTATACTTTTTTCTTTTTGTGCTCCCTCTACTCATCATTTATTTTTCTAAATATATTTTAGTTTTACTTATTATTTTTGATATATCAAGAAAGAATAATAATTTTTTTTCATATTTTACCCTCGATATTAAATACGTATTATTCAAATTACTTCAAACATATCAAGAAGGGGTGATAATCTTTTCCATATTTACCGTTTATATTAAATACTTATTTTCCATATTTTAAGACATCATTTAAAATGGATATGTGAAGTCGAAAAAGTAATTTTTATACTTTCATTTATATTGAATTTCCATATGTAGTTTAGTTGTTTAAAATCATATAAAAATTTATGATTCTTTTACAATATTTTTCTTTATCATCTAATTTATCCCAGTTTTAAATTTTATTTATTCACTTCCCTTATAAGTCCAATTTGTAAATGTGAACGAAAATCTAAAAGTGGAATGACCCATTTTATGAAATTGTGTAGAAAATGCTCTGTCAATGCCATTACTCTTCCCACTATCTAAAGTCCAAATTTTGTAAAACTCTTTGTATTTTCCATTCAACAACTACTTTTTTTCCCCCACAATTATAAATAACCCATATTCATGCAAATTTATAGTATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAAAGATGTTGAACTGTTGATTAACAATGGCGTGGGACACAGTTTTTACCTGAACAAAATTGCTGTTGATATGGACCCTGTTACTGGTTCTGCAACTGAAAAGCTTTTTGAAGCCATTGCAGAGTTCATCAACAAGCACTGATCAAATGAGAAATTAATTTACTATAAGATTTATGAGTGCAAATAAGCATGATATTTTATGAGAATTTTTTTGCATGCTGAACATCTGAAACGATTGTATCGTATTGTTAGTTTAAATATTCATGTTTGTTTTGATGATTGTTATTTTAACTATATTGTATCCAATTATAAAATATTAAAATTTCATAATAATCGATATGATCGGACTACATCTTTATCATAATATCTTTCTTCTCGTTATGGATTTACTTATCATTTAATAATTCAATTTTTGTTGTTTAGTATGTCTTTATTTAGTGTAGTAGGTTATGTTTATCTTGTATAGTATATTATTTTTTGAAGTGTATTATTTAAATTATTAATATGTGATCTAATATAATAACGAAAAATCATACTATCTATTCAAATAGTTACATTCATTAAAACAATATGCAACTTTTTTTTAGTGTTATTTTAAATCATTAAATTCTTTTACCATAATGTAATAGTAAATAAATAGTTATATTTATTAAAACAATATTTACTTCATATCCAACTTTTTGAGAAGTGTTTTTCTTTTTATTCATTAAGAAATTTTACCATAATGCAAATTTCTTCTGCCATACTATTGGGGCAATGATACCCCTGCTATATAAAAGCTAGAGCATATACACCCTCTACTTTAACAGAAGACTAATAGGGATACATAACACAATCTTATCTGTCATCAGATATTTAATTAGTGGATAAAATTACGACAATATATATCCGTTAGTATAAAGGACGTATATGCTTTAGTTTTTGGACGGCATGAACATCAATGTTCAAAAAATATGACGAAAAATATTTGCTCACTATTTCCAATAGTACAGGGATATATTTGTCCTCTTTTCCCTTTAAATTAAGTCGATCTCAATCCATTTGATTTTTTTTTTTTAATTGACCACAATGTAATCTCCAATTTTAATTCATTTTAAGACTCTTTTTTAACATTGGTGGAATATATATGTTTATATTGAAGGTATAAATTACTATTTCCTTTATATCTTCTAGATTACATCATTGATAAGACTATATACCAACTTCCACATTACAGAGAACTACAGATGTTTTTTAGTATGGTGGAGATATGTAGTGTGTTCCCCTTTTTAGCAACACATTGATTATCTTTTTTAAAAAAAGAATAGTCATTACAAGCCACTCAAGTTTATCACTTCAAAAAACAATCTCAGATCTTCCTGCCACCAAAAAAGTAAAATAAAAATCGATTACTTGTAAGTTGCAACACACAGAACTTCAAAATTTATGTACACTTAATAATAATGTATAAAGTTCAGGTGGTGTGCATCGAATAAACCTTATATATATACTAATATATGAAAAAGTTAAGACAGTAATGAACCAACGGTAAAACAATAATTCTCTAATATCTTGCATTACAATGAAAACTAAGGACCCAAACCAATTTCCCTCAAGAGTAATAATGTGAAGTTTTTCGATACATAGCTTTGTGTAAACTTGAGACGATAGGTACAAGGAGATGTATCACGTAAGGCACGCTAAACAAGCTTGCAAAATTACAGTCCCGGTTAAAAAATAAAGAGAAGTTACATTTGGACAATAACTGTTTGGTCAAAAGCCAGGAATTTCTCCTGGCATGGGAGCTAATTCGTTATTGCCAAACCTCTCCTCGTCGTAGAAACAGGCATGAACAATCCTACCGCCAAAAAATCGACCTTCAAGTTCTATAAGGGCTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCAACGGTAAAACAATAATTCTCTAATATCTTGCATTACAACGAAAACT-AGGACCCAAACCAATTTCCCTC-AGAGTAATAATGTCAAGTTTTTCGATACATAGCTTTGTGTAAACTTGAGACGATAGGTACAAGGAGATGTATCACGTAAGGCACGCTAAACAAGCTTGCAAAATTACAGTCCCGGTTAAAAAATAAAGAGAAGTTACATTTGGACAATAACTGTTTGGTCAAAAGCCAGGAATTTCTCCTGGCATGGGAGCTAATTCGTTATTGCCAAACCTCTCCTCGTCGTAGAAACAGGCATGAACAATCCTACCGCCAAAAAATCGACCTTTAAGTTCTATAAGGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550240" ref_strand="+" ref_description="SGN-E550240 [TUS-5-N18](-)">
      <seq>aaatatattctctctcatatttatcttttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatcttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtatttataggattttttagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="88805" stop="87626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88506" g_stop="87910" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E550240" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88506" e_stop="87910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAA--TTTTCTCTCTCTCATGGTTATCTTTTATGATTTTCCTCCAACATTCAAGTTGCAAATATCTTTTTGCCATATATTTTGATTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCCAATTTTATTTTTGTTTAAATATTAAAAAAATGTTATTTGTATTTTTCAACTTCCGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTATTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATAAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTTAAAACACAAATGTAGAATCTTTGTCTACTCGTGAGGATCTTGAAAAAAACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTCTTTTTTAGAATTT</genome_strand>
        <mrna_strand>AAATATATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAG-GATTTTTTAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389671" ref_strand="+" ref_description="SGN-E389671 [TUS-4-N18](-)">
      <seq>tttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatgttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="88780" stop="87629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88480" g_stop="87929" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E389671" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88480" e_stop="87929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTT--TCTCTCTCTCATGGTTATCTTTTATGATTTTCCTCCAACATTCAAGTTGCAAATATCTTTTTGCCATATATTTTGATTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCCAATTTTATTTTTGTTTAAATATTAAAAAAATGTTATTTGTATTTTTCAACTTCCGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTATTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATAAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTTAAAACACAAATGTAGAATCTTTGTCTACTCGTGAGGATCTTGAAAAAAACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTA</genome_strand>
        <mrna_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATGTTGAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622082" ref_strand="+" ref_description="SGN-E622082 [72445]">
      <seq>ctttttttcactattataaatacacccatattcatgcaaattaatagtatacccaagaaaaaataaaacttccttttccactttttaaaaattcctaaaatggttcatgataagcaagttaaggatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggaccggtccacccgaagtcaagttcatggctgagccagttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtagtcgccggggagaactccggtagtcgtttccgtatctacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggcggtttttgcatcagccaagctgattggtacatgtactatgctgtctacactcgcttagcgcgtgtggctaacgctattattgtctccgtcttcctccctctggcgccggagcaccgcctccctgccgcctgtgatgccagcttcgccggccttctctggctccgtgacgtttcccggaagcaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaacaatcgtccatcaagtcgccgccagagccggagaagaagacttatctccgatgaggctcgccggcgcaattccgatccatccaggtttcatgcggtccagcgaagcaatcggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89324" stop="90668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89616" g_stop="90368" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E622082" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89616" e_stop="90368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCCCACAATTATAAATA-ACCCATATTCATGCAAATTTATAGTATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCT</genome_strand>
        <mrna_strand>CTTTTTTTCACTATTATAAATACACCCATATTCATGCAAATTAATAGTATACCCAAGAAAAAATAAAA-----C----TTCCT-TTT---CCACTTTTTA-AAAATTCCTAAAATGGTTCATGATAAGCAAGTTAAGGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACCGGTCCACCCGAAGTCAAGTTCATGGCTGAGCCAGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTAGTCGCCGGGGAGAACTCCGGTAGTCGTTTCCGTATCTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGCGGTTTTTGCATCAGCCAAGCTGATTGGTACATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCTAACGCTATTATTGTCTCCGTCTTCCTCCCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCCTGTGATGCCAGCTTCGCCGGCCTTCTCTGGCTCCGTGACGTTTCCCGGAAGCAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAACAATCGTCCATCAAGTCGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAGGCTCGCCGGCGCAATTCCGATCCATCCAGGTTTCATGCGGT-CCAGCGAAGC-AATCGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719797" ref_strand="+" ref_description="SGN-E719797 [FC08DF05]">
      <seq>gatacccaagaaaaaataaaatttttcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagttaaagatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcgaagcaaatcggagctagaacaggaacaaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaggatcacccgatcacttgtccgatgggtgatgcggcaccggcggtggaggagctgaaattgccgccttacttgtactgtgtagcggagaaggatctgataaaagacactgaaatggaattttacgaatcactgaaaacaggggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89363" stop="90896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89662" g_stop="90596" g_length="935"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="935" r_length="935" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E719797" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>935</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89662" e_stop="90596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAA</genome_strand>
        <mrna_strand>GATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717621" ref_strand="+" ref_description="SGN-E717621 [FC02BA08]">
      <seq>gatcccaagaaaaatacaatttttcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagttaaagatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcgaagcaaatcggagctagaacaggaacaaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaggatcacccgatcacttgtccgatgggtgatgcggcaccggcggtggaggagctgaaattgccgccttacttgtactgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89363" stop="90830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89662" g_stop="90530" g_length="869"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="867" r_length="867" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E717621" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89662" e_stop="90530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGT</genome_strand>
        <mrna_strand>GAT-CCCAAGAA-AAATACAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725396" ref_strand="+" ref_description="SGN-E725396 [FC26DH05]">
      <seq>gatacccaagaaaaaataaaatttttcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagttaaagatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcgaagcaaatcggagctagaacaggaacaaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaggatcacccgatcacttgtccgatgggtgatgcggcaccggcggtggaggagctgaaattgccgccttacttgtactgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89363" stop="90830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89662" g_stop="90530" g_length="869"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="869" r_length="869" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E725396" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89662" e_stop="90530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGT</genome_strand>
        <mrna_strand>GATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724150" ref_strand="+" ref_description="SGN-E724150 [FC23AH03]">
      <seq>gggcgattggcggccaatcggccgaattgatatacccaagaacaataaaatttttcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagttaaagatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcgaagcaaatcggagctagaacaggaacaaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaggatcacccgatcacttgtccgatgggtgatgcggcaccggcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89358" stop="90794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89662" g_stop="90494" g_length="833"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="862" r_length="832" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E724150" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89662" e_stop="90494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGT</genome_strand>
        <mrna_strand>TATACCCAAGAACAA-TAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718250" ref_strand="+" ref_description="SGN-E718250 [FC04AE07]">
      <seq>aatcggccgaattgatacccaagaaaaaataaaatttttcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagttaaagatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcgaagcaaatcggagctagaacaggaacaaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaggatcacccgatcacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89358" stop="90768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89662" g_stop="90468" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="820" r_length="807" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E718250" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89662" e_stop="90468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGT</genome_strand>
        <mrna_strand>GATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726240" ref_strand="+" ref_description="SGN-E726240 [LA11BA01]">
      <seq>cgaattaaataaaatttttcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagttaaagatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccagggttcatgcgatcccagcgaagcaaatcggagctagaacaggaaccaaccccctttctaaccttagatatggtggataaatttatggaactggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89375" stop="90731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89668" g_stop="90431" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E726240" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89668" e_stop="90431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTT</genome_strand>
        <mrna_strand>CGA-ATTAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGGTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACCAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718957" ref_strand="+" ref_description="SGN-E718957 [FC06BD04]">
      <seq>gcggccaatcggccgaattgatacccaagaaaaaaataaaatttttcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagttaaagatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcgaagcaaatcggagctagaacaggaacaaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaggatcacccgatcacttgtccgatgggtgatgcggcaccggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89358" stop="90792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89672" g_stop="90492" g_length="821"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="851" r_length="821" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E718957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89672" e_stop="90492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCG</genome_strand>
        <mrna_strand>AAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700265" ref_strand="+" ref_description="SGN-E700265 [FA12CE10]">
      <seq>aaaaataaaatttttcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagttaaagatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcgaagcaaatcggagctagaacaggaacaaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaggatcacccgatcacttgtccgatgggtgatgcggcaccggcggtggaggagctgaaattgccgccttacttgtactgtgtaccggagaaggatctgataaagacactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89373" stop="90862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89673" g_stop="90562" g_length="890"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="889" r_length="889" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E700265" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89673" e_stop="90562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAA</genome_strand>
        <mrna_strand>AAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTACCGGAGAAGGATCTGAT-AAAGACACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285785" ref_strand="+" ref_description="SGN-E285785 [cLES-5-K12]">
      <seq>aaataaaatttttcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagtaaaagatgtagtttccggttggcttacagtttttgacgacggttcggtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89375" stop="90370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89675" g_stop="90070" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E285785" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89675" e_stop="90070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTA</genome_strand>
        <mrna_strand>AAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTAAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCGGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200378" ref_strand="+" ref_description="SGN-E200378 [cLEC-1-E1]">
      <seq>aataaaatttttcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagtaaaagatgtagtttccggttggcttacagtttttgacgacggttcggtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcactttcacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89376" stop="90372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89676" g_stop="90072" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E200378" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89676" e_stop="90072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATT</genome_strand>
        <mrna_strand>AATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTAAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCGGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTTCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718730" ref_strand="+" ref_description="SGN-E718730 [FC05CD11]">
      <seq>tttttcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagttaaagatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcgaagcaaatcggagctagaacaggaaacaaaccccccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89383" stop="90690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89683" g_stop="90391" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E718730" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89683" e_stop="90391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGG-AACAAACCCCCTTTC</genome_strand>
        <mrna_strand>TTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAAACAAACCCCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390755" ref_strand="+" ref_description="SGN-E390755 [TUS-47-K3]">
      <seq>ttcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagtaaaagatgtagtttccggttggcttacagtttttgacgacggttcggtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagggggggcgccctgccgcttgtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89386" stop="90431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89686" g_stop="90131" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E390755" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89686" e_stop="90131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGC</genome_strand>
        <mrna_strand>TTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTAAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCGGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGGGGGGGCGCCCTGCCGCTTGTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396365" ref_strand="+" ref_description="SGN-E396365 [TUS-47-J6]">
      <seq>ttcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagtaaaagatgtagtttccggttggcttacagtttttgacgacggttcggtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89386" stop="90431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89686" g_stop="90131" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E396365" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89686" e_stop="90131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGC</genome_strand>
        <mrna_strand>TTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTAAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCGGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278605" ref_strand="+" ref_description="SGN-E278605 [cLER-10-D20]">
      <seq>tcataatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagtaaaagatgtagtttccggttggcttacagtttttgacgacggttcggtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89387" stop="90370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89687" g_stop="90070" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E278605" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89687" e_stop="90070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTA</genome_strand>
        <mrna_strand>TCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTAAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCGGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289138" ref_strand="+" ref_description="SGN-E289138 [cLES-18-F21]">
      <seq>taatttgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagtaaaagatgtagtttccggttggcttacagtttttgacgacggttcggtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89390" stop="90521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89690" g_stop="90221" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E289138" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89690" e_stop="90221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGT</genome_strand>
        <mrna_strand>TAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTAAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCGGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722839" ref_strand="+" ref_description="SGN-E722839 [FC18CA02]">
      <seq>aatcggccgaattgaatttgtgtttatttccctttttagaaatttcctaaaatggttcatgataagcaagttaaagatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcgaagcaaatcggagctagaacaggaacaaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaggatcacccgatcacttgtccgatgggtgatgcggcaccggcggtggaggagctgaaattgccgccttacttgtactgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89391" stop="90830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89691" g_stop="90530" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="854" r_length="840" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E722839" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89691" e_stop="90530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGT</genome_strand>
        <mrna_strand>AATTTGTGTTTATTTCCCTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391164" ref_strand="+" ref_description="SGN-E391164 [TUS-47-J12]">
      <seq>tgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagtaaaagatgtagtttccggttggcttacagtttttgacgacggttcggtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89395" stop="90431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89695" g_stop="90131" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E391164" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89695" e_stop="90131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGC</genome_strand>
        <mrna_strand>TGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTAAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCGGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397057" ref_strand="+" ref_description="SGN-E397057 [TUS-44-F14]">
      <seq>tgtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagtaaaagatgtagtttccggttggcttacagtttttgacgacggttcggtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89395" stop="90259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89695" g_stop="89959" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E397057" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89695" e_stop="89959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTG</genome_strand>
        <mrna_strand>TGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTAAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCGGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371844" ref_strand="+" ref_description="SGN-E371844 [TUS-30-M1]">
      <seq>gtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagtaaaagatgtagtttccggttggcttacagtttttgacgacggttcggtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89396" stop="90653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89696" g_stop="90353" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E371844" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89696" e_stop="90353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCG</genome_strand>
        <mrna_strand>GTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTAAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCGGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287161" ref_strand="+" ref_description="SGN-E287161 [cLES-6-F9]">
      <seq>gtgtttattttactttttagaaatttcctaaaatggttcatgataagcaagtaaaagatgtagtttccggttggcttacagtttttgacgacggttcggtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89396" stop="90650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89696" g_stop="90350" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E287161" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89696" e_stop="90350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCA</genome_strand>
        <mrna_strand>GTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTAAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCGGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718072" ref_strand="+" ref_description="SGN-E718072 [FC03CD05]">
      <seq>attttactttttagaaatttcctaaaatggttcatgataagcaagttaaagatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcgaagcaaatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89402" stop="90664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89702" g_stop="90364" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E718072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89702" e_stop="90364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGG</genome_strand>
        <mrna_strand>ATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721886" ref_strand="+" ref_description="SGN-E721886 [FC15CD04]">
      <seq>attttactttttagaaatttcctaaaatggttcatgataagcaagttaaagatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacaacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccatcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89402" stop="90573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89702" g_stop="90273" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E721886" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89702" e_stop="90273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCC</genome_strand>
        <mrna_strand>ATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACAACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCATCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410026" ref_strand="+" ref_description="SGN-E410026 [PPI-15-H4]">
      <seq>cttccttttccacttattaaaaattcctaaaatggttcatgataagcgagttaaagatgtagtttccggttggcttacagtttttgacgatggttcagtagaccggacatggaccggtccacccgaagtcaagttcatggctgagccagttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgttgtcgccggggagaactccggtagtcgtttccgtatctacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggcggtttttgcatcagccaagctgattggtacatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattattgtctccgtcttcctccctctggcgccggagcaccgcctccctgccgcctgtgatgccggcttcgccggccttctctggctccgtgacgtttcccggaagcaaggtcacgagccctggctcaacgaatacgccgatttcaatcgcgtattcctcatcggagacagctccggcggcaacatcgtccatcaagtcgccgccagagccggagaaagagacttatctccgatgaggctcgctggcgcatttccgatccatccaggcttcatgcggtcccagcgaagtaaatcggagctagaacaggaacaaacccccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89400" stop="90690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89716" g_stop="90390" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="694" r_length="675" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E410026" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89716" e_stop="90390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTT</genome_strand>
        <mrna_strand>AAAATTCCTAAAATGGTTCATGATAAGCGAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGATGGTTCAGTAGACCGGACATGGACCGGTCCACCCGAAGTCAAGTTCATGGCTGAGCCAGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTTGTCGCCGGGGAGAACTCCGGTAGTCGTTTCCGTATCTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGCGGTTTTTGCATCAGCCAAGCTGATTGGTACATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTATTGTCTCCGTCTTCCTCCCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCCTGTGATGCCGGCTTCGCCGGCCTTCTCTGGCTCCGTGACGTTTCCCGGAAGCAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAATCGCGTATTCCTCATCGGAGACAGCTCCGGCGGCAACATCGTCCATCAAGTCGCCGCCAGAGCCGGAGAAAGAGACTTATCTCCGATGAGGCTCGCTGGCGCATTTCCGATCCATCCAGGCTTCATGCGGTCCCAGCGAAGTAAATCGGAGCTAGAACAGGAACAAACCCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473631" ref_strand="+" ref_description="SGN-E473631 [cSTB-33-M4]">
      <seq>cttttccacttttaaaaaattcctaaaatggttcatgataagcaagttaaggatgtagtttccggttggcttacagtttttgacgacggttcagtagaccggacatggaccggtccacccgaagtcaagttcatggctgagccagttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtagtcgccggggagaactccggtagtcgtttccgtatctacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggcggtttttgcatcagccaagctgattggtacatgtactatgctgtctacactcgcttagcgcgtgtggctaacgctattattgtctccgtcttcctccctctggcgccggagcaccgcctccctgccgcctgtgatgtcggcttcgccggccttctctggctccgtgacgtttcccggaagcaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89400" stop="90538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89716" g_stop="90238" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="538" r_length="523" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E473631" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89716" e_stop="90238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACA</genome_strand>
        <mrna_strand>AAAATTCCTAAAATGGTTCATGATAAGCAAGTTAAGGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACCGGTCCACCCGAAGTCAAGTTCATGGCTGAGCCAGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTAGTCGCCGGGGAGAACTCCGGTAGTCGTTTCCGTATCTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGCGGTTTTTGCATCAGCCAAGCTGATTGGTACATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCTAACGCTATTATTGTCTCCGTCTTCCTCCCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCCTGTGATGTCGGCTTCGCCGGCCTTCTCTGGCTCCGTGACGTTTCCCGGAAGCAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272155" ref_strand="+" ref_description="SGN-E272155 [cLEN-4-G21]">
      <seq>aaagatgtagtttccggttggcttacagtttttgacgacggttcggtagaccggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtgttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgcgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89449" stop="90541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89749" g_stop="90241" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E272155" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89749" e_stop="90241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCT</genome_strand>
        <mrna_strand>AAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCGGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTGTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGCGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286140" ref_strand="+" ref_description="SGN-E286140 [cLES-13-B14]">
      <seq>ggacatggactggtccacctgaagtcaagttcatggctgagcctgttccaccgcatgacgacttcattgacggcgttgccgtcaaagatgtggtcgccggggagaattccggtagtcgtttccgtatttacttacctgaacgtaatgatagttcggttgataagcttcccgtcattcttcacttccacggcggtggtttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89501" stop="90562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89801" g_stop="90262" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E286140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89801" e_stop="90262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATC</genome_strand>
        <mrna_strand>GGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404394" ref_strand="+" ref_description="SGN-E404394 [PPC-13-H18]">
      <seq>tccgtcattcttcacttccacggcggcggtttttgcatcagccaagctgattggtacatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattattgtctccgtcttcctccctctggcgccggagcaccgcctccctgccgcctgtgatgccggcttcgccggtcttctatggctccgtgacgtttcccggaagcaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacatcgtccatcaagtcgccgccagagccggagaagaagacttatctccgatgaggctcgccggcgcaattccgatccatccaggctttacacggtcccagcgaagcaaatcggagctagaacaggaacaaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaggatcacccgatctcttgtccgatgggtgatgctgcgccggcggtggaggagcttaaattgccgccttatttgtactgtgtggcggagaaggatcttataaaagacactgaaatggaattttacgaatcattgaaaaaaggaaaaaaagatgttgagctgttgatgaacaatggcgtgggacacagtttttacctgaaacaaattgctgttgatatggaccctgttactggttctgcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89669" stop="90990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89968" g_stop="90690" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E404394" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89968" e_stop="90690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAAAGATGTTGAACTGTTGATTAACAATGGCGTGGGACACAGTTTTTACCTGAACAAAATTGCTGTTGATATGGACCCTGTTACTGGTTCTGCAACT</genome_strand>
        <mrna_strand>TCCGTCATTCTTCACTTCCACGGCGGCGGTTTTTGCATCAGCCAAGCTGATTGGTACATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTATTGTCTCCGTCTTCCTCCCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCCTGTGATGCCGGCTTCGCCGGTCTTCTATGGCTCCGTGACGTTTCCCGGAAGCAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACATCGTCCATCAAGTCGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAGGCTCGCCGGCGCAATTCCGATCCATCCAGGCTTTACACGGTCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCTCTTGTCCGATGGGTGATGCTGCGCCGGCGGTGGAGGAGCTTAAATTGCCGCCTTATTTGTACTGTGTGGCGGAGAAGGATCTTATAAAAGACACTGAAATGGAATTTTACGAATCATTGAAAAAAGGAAAAAAAGATGTTGAGCTGTTGATGAACAATGGCGTGGGACACAGTTTTTACCTGAAACAAATTGCTGTTGATATGGACCCTGTTACTGGTTCTGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248722" ref_strand="+" ref_description="SGN-E248722 [cLEF-58-M22]">
      <seq>tttttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttatcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccggctccctgccgcttgtgatgccggcttcgccggcctcctctggctccctgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgacagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaagcttcatgctatcccagcgaagcaaatcggagctggaacaggaacaaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaagatcacccgatcacttgtccgatgggtgatgcggcaccggcggtggaagagctgaaattgccgccttacttgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89697" stop="90826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89997" g_stop="90526" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E248722" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89997" e_stop="90526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACT</genome_strand>
        <mrna_strand>TTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTATCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGGCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCCTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGACAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAAGCTTCATGCTATCCCAGCGAAGCAAATCGGAGCTGGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAAGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAAGAGCTGAAATTGCCGCCTTACTTGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267994" ref_strand="+" ref_description="SGN-E267994 [cLEI-15-A12]">
      <seq>ttgtatcagccaagctgattggttcatgtactatgctgtctacactcgcttagcgcgtgtggcaaacgctattgttgtttccgtcttcctacctctggcgccggagcaccgcctccctgccgcttgtgatgccggcttcgccggcctcctctggctccgtgacgtatcccgggaacaaggtcacgagccctggctcaacgaatacgccgatttcaaccgcgtattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcgaagcaaatcggagctagaacaggaacaaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaggatcacccgatcacttgtccgatgggtgatgcggcaccggcggtggaggagctgaaattgccgccttacttgtactgtgtagcggagaaagatctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89700" stop="90848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90000" g_stop="90548" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E267994" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90000" e_stop="90548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGAT</genome_strand>
        <mrna_strand>TTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAAGATCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371843" ref_strand="+" ref_description="SGN-E371843 [TUS-30-M1](-)">
      <seq>tattcctcatcggagacagctccggcggaaacgtcgtccatcaagttgccgccagagccgaagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcgaagcaaatcggagctagaacaggaacaaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaggatcacccgatcacttgtccgatgggtgatgcggcaccggcggtggaggagctgaaattgccgccttacttgtactgtgtagcggagaaggatctgataaaagacactgaaatggaattttacgaatcactgaaaacaggggaaaaagatgttgaactgttgattaacaatggcgtgggacacagtttttacctgaacaaaattgctgttgatatggaccctgttactggttctgcaactgaaaagctttttgaagccattgcagagttcatcaacaagcactgatcaaatgagaaattaatttactataagatttatgagtgcaaataagcatgatattttatgagaatttttttgcatgctgaacatctgaaacgattgtatttatgtttgttttgatgattgttattttaactatatcgtatccaattataaaatattaaaatttcataataatcgatatgatcggactacaactttatcataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89921" stop="91259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90221" g_stop="90956" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E371843" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90221" e_stop="90956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAAAGATGTTGAACTGTTGATTAACAATGGCGTGGGACACAGTTTTTACCTGAACAAAATTGCTGTTGATATGGACCCTGTTACTGGTTCTGCAACTGAAAAGCTTTTTGAAGCCATTGCAGAGTTCATCAACAAGCACTGATCAAATGAGAAATTAATTTACTATAAGATTTATGAGTGCAAATAAGCATGATATTTTATGAGAATTTTTTTGCATGCTGAACATCTGAAACGATTGTATCGTATTGTTAGTTTAAATATTCATGTTTGTTTTGATGATTGTTATTTTAACTATATTGTATCCAATTATAAAATATTAAAATTTCATAATAATCGATATGATCGGACTACATCTTTATCATA</genome_strand>
        <mrna_strand>TATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGAAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAAAGATGTTGAACTGTTGATTAACAATGGCGTGGGACACAGTTTTTACCTGAACAAAATTGCTGTTGATATGGACCCTGTTACTGGTTCTGCAACTGAAAAGCTTTTTGAAGCCATTGCAGAGTTCATCAACAAGCACTGATCAAATGAGAAATTAATTTACTATAAGATTTATGAGTGCAAATAAGCATGATATTTTATGAGAATTTTTTTGCATGCTGAACATCTG--A--A----A-CG-A---TT-G--T--AT-TT-ATGTTTGTTTTGATGATTGTTATTTTAACTATATCGTATCCAATTATAAAATATTAAAATTTCATAATAATCGATATGATCGGACTACAACTTTATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397056" ref_strand="+" ref_description="SGN-E397056 [TUS-44-F14](-)">
      <seq>aaacgtcgtcccatcaagttgccgccagagccggagaagaagacttatctccgatgaagctcgccggcgcaatcccgatccatccaggcttcatgcgatcccagcgaagcaaatcggagctagaacaggaacaaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaggatcacccgatcacttgtccgatgggtgatgcggcaccggcggtggaggagctgaaattgccgccttacttgtactgtgtagcggagaaggatctgataaaagacactgaaatggaattttacgaatcactgaaaacaggggaaaaagatgttgaactgttgattaacaatggcgtgggacacagtttttacctgaacaaaattgctgttgatatggaccctgttactggttctgcaactgaaaagctttttgaagccattgcagagttcatcaacaagcactgatcaaatgagaaattaatttactataagatttatgagtgcaaataagcatgatattttatgagaatttttttgcatgctgaacatctgaaacgattgtatttatgtttgttttgatgattgttattttaactatatcgtatccaattataaaatattaaaatttcataataatcgatatgatcggactacaactttatcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="89949" stop="91259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90249" g_stop="90956" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E397056" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90249" e_stop="90956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTCGT-CCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAAAGATGTTGAACTGTTGATTAACAATGGCGTGGGACACAGTTTTTACCTGAACAAAATTGCTGTTGATATGGACCCTGTTACTGGTTCTGCAACTGAAAAGCTTTTTGAAGCCATTGCAGAGTTCATCAACAAGCACTGATCAAATGAGAAATTAATTTACTATAAGATTTATGAGTGCAAATAAGCATGATATTTTATGAGAATTTTTTTGCATGCTGAACATCTGAAACGATTGTATCGTATTGTTAGTTTAAATATTCATGTTTGTTTTGATGATTGTTATTTTAACTATATTGTATCCAATTATAAAATATTAAAATTTCATAATAATCGATATGATCGGACTACATCTTTATCATA</genome_strand>
        <mrna_strand>AAACGTCGTCCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAAAGATGTTGAACTGTTGATTAACAATGGCGTGGGACACAGTTTTTACCTGAACAAAATTGCTGTTGATATGGACCCTGTTACTGGTTCTGCAACTGAAAAGCTTTTTGAAGCCATTGCAGAGTTCATCAACAAGCACTGATCAAATGAGAAATTAATTTACTATAAGATTTATGAGTGCAAATAAGCATGATATTTTATGAGAATTTTTTTGCATGCTGAACATCTG--A--A----A-CG-A---TT-G--T--AT-TT-ATGTTTGTTTTGATGATTGTTATTTTAACTATATCGTATCCAATTATAAAATATTAAAATTTCATAATAATCGATATGATCGGACTACAACTTTATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391350" ref_strand="+" ref_description="SGN-E391350 [TUS-47-J12](-)">
      <seq>aaaccccctttctaaccttagatatggtggataaatttatggaactggctttaccgattggtagcactaaggatcacccgatcacttgtccgatgggtgatgcggcaccggcggtggaggagctgaaattgccgccttacttgtactgtgtagcggagaaggatctgataaaagacactgaaatggaattttacgaatcactgaaaacaggggaaaaagatgttgaactgttgattaacaatggcgtgggacacagtttttacctgaacaaaattgctgttgatatggaccctgttactggttctgcaactgaaaagctttttgaagccattgcagagttcatcaacaagcactgatcaaatgagaaattaatttactataagatttatgagtgcaaataagcatgatattttatgagaatttttttgcatgctgaacatctgaaacgattgtatttatgtttgttttgatgattgttattttaactatatcgtatccaattataaaatattaaaatttcataataatcgatatgatcggactacaactttatcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="90080" stop="91259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90380" g_stop="90956" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E391350" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90380" e_stop="90956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAAAGATGTTGAACTGTTGATTAACAATGGCGTGGGACACAGTTTTTACCTGAACAAAATTGCTGTTGATATGGACCCTGTTACTGGTTCTGCAACTGAAAAGCTTTTTGAAGCCATTGCAGAGTTCATCAACAAGCACTGATCAAATGAGAAATTAATTTACTATAAGATTTATGAGTGCAAATAAGCATGATATTTTATGAGAATTTTTTTGCATGCTGAACATCTGAAACGATTGTATCGTATTGTTAGTTTAAATATTCATGTTTGTTTTGATGATTGTTATTTTAACTATATTGTATCCAATTATAAAATATTAAAATTTCATAATAATCGATATGATCGGACTACATCTTTATCATA</genome_strand>
        <mrna_strand>AAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAAAGATGTTGAACTGTTGATTAACAATGGCGTGGGACACAGTTTTTACCTGAACAAAATTGCTGTTGATATGGACCCTGTTACTGGTTCTGCAACTGAAAAGCTTTTTGAAGCCATTGCAGAGTTCATCAACAAGCACTGATCAAATGAGAAATTAATTTACTATAAGATTTATGAGTGCAAATAAGCATGATATTTTATGAGAATTTTTTTGCATGCTGAACATCTG--A--A----A-CG-A---TT-G--T--AT-TT-ATGTTTGTTTTGATGATTGTTATTTTAACTATATCGTATCCAATTATAAAATATTAAAATTTCATAATAATCGATATGATCGGACTACAACTTTATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537507" ref_strand="+" ref_description="SGN-E537507 [TUS-56-C9](-)">
      <seq>aggttaagagtgtcaatttcaatatgcctccaacaagggtcgtgctgcttaggaatatggttggtcctggcgaggttgatgatgacctagaaggtgaggtggctgaagagtgctctaagtttggtactgtaactcgtgtcttaatatttgagattacagaaacaaatttccctcatgaagaagctgttcggatattcgttcaatttgagagagcagaacacgcaactaaagcccttatagaacttgaaggtcgattttttggcggtaggattgttcatgcctgtttctacgacgaggagaggtttggcaataacgaattagctcccatgccaggagaaattcctggcttttgaccaaacagttattgtccaaatgtaacttctctttattttttaaccgggactgtaattttgcaagcttgtttagcgtgccttacgtgatacatctccttgtacctatcgtctcaagtttacacaaagctatgtatcgaaaaacttgacattattactctgagggaaattggtttgggtcctagttttcgttgtaatgcaagatattagagaattattgttttaccgttggttccaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="95569" stop="77018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95269" g_stop="95211" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95210" i_stop="92640" i_length="2571">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92639" g_stop="92108" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="589" r_length="530" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92107" i_stop="91655" i_length="453">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91654" g_stop="91634" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="610" r_length="21" r_score="0.810"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E537507" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95269" e_stop="95211"/>
          <exon e_start="92639" e_stop="92108"/>
          <exon e_start="91654" e_stop="91634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATGGTATGGATTGTTAAGATATTCTGTCAACTTATTTATTTGTTCTGCTTGCTTGGGGAGTTCTACTCTATGAGCTTGTTTAGCTGCATAAATTATGATGATTTCTTGCTAGAATAGTATCTTTCATATAGTTAAGTCGCTCAGGAATATGATATGGATTTTTATGATGTTCTATTGACTTACTTATTTGCTCTGTTTGATTTGGGATTTTTATTATATGAGCTTTTTTAGCTGTACAAATTATGATGGTTTCTTGCTAGAATAGTTTCTTTCATATGAGTTAATTTGGTTTCAGTCGTTTGAACTTTGGCTTAGTCTTACACTTAGTGCAAGTAGTTTCCAGGGGCTCAGCTGTGTTTTGAATCAGAGTTGTTTACGCTGAGGAAATTTGAAGTAGAAAAACTTTCGTCCTTTAGTGATTTCTGACCAACACACCCGTCAATTTGCTTTTATTTTTGGCCCGTAAAAGTGAAGTGCTCAGCCATGCCATTGAGAATAGTCTTTTAAATTTGGCTTCCACCTAATAAAATTGTTCACCTCATTGAGAAAAAGAAGAATTTGGCTTCCACCTTAATCTATCTTAGTAGCTTAGTTGTTTGACTACCTGAACTTTCACCTTGTTGGTGAGGGTTGGATTCCCCACCTTGTAATCCCCTTCCTCATTTCCCCTTTCCCTACCCCATTTTTTATTTTCCATTTTTTAAAAAAAAGCTATCTTTCTAATATAGCAGAGAAGAGAATTACCATTCTGCCTTTGTTATCAGAAACAAGTTTCTGATTGGTTATCTATATGAGCTCATTTAAGGTCAAATATTTGGTAGTGAGTGTTTCTGATTGTTTATTTATTAGATGATGGGTGTTAAGACTGTTAACGTTTCATTGTTGAATTTGTGTTTCTAGAGGCAGTCATGTAGTTTAATCATGTGAAAAGGTATTATGTATAATTGGCTATTGAATTGTTCATTCTTCTGACATTTGTTAGGTCTTGAGAGACAGTGTGCTACTCGTATACTTTGACAAGTTATTTAATTGTGGTAGCTAATGTACTAAGATTCACTCACAAATCCTTTTTCTTTATAAGGTTCACTGACTGGTCTTTATATAGTATACTGAACCTGTTCAACAGATTTATCTATGTGAACTTTTTAACCTTTTATTATGCGATCTATAGGTTCTTTTTTAAAAAAGGATAAAGGACCAATTAGTCTTAACCCTTATGTTTTATTTCATTAATTTGTGCCTACCAAACTATTTTGGGGTCTAACAATAAGTACTACTGGTTTCTAAGGAAAATGAGAACTATTGAGTATTAGTATAATTTTTTATCAATCTTTAATGATTGCCTGATAAGTTAAATACTAAAGTAGCTAATTAGAACATTATCCACTTCTGTCTATCATTTTCTGTTGGCATTGGCTACTTAAAACATCTCCTCAGAAATTTGTCTGTGCATTTGCTGACTGCTTTCACATTACACTAAGGGGAATCAACTTTCTCTAGATATAGGGGAAAAAAAGTACCTCTTTTCCCCTTTAAGGTCTCGTGTGCTGGTGATTACCAATATCTTCATAAATGAGGGTACAACCCTTGATTAGCTTCTATTCTTGTGATTCTAAGTATTTCTCCACTCACTCTAGGGTTTGTAATATGGTTAATTGCTCTGCTCAGCGGGGAAGTCACTTTTAGTGAATGAACCAAGGGGTTAGCTTTTACTCAAACTTCTCTAGCTTGTATGGGTCTTTGGACAAGGATATACACGCATAGATACCTTTGGATTATAGATGGTATTACAATGCGGAGGAAGTAGAGATTCATTTAGGAAGGATTGTAATGCTGGTTCATGGTGAATTTGGTTGCAGTTAAAGTGAACTATATCTGAAGAATTGTTGATGGATTGGATATATGTATTCTTTGTTTGATTAATGAGGTTTAAGTTGTATAAAGCTATGAAATACAACTTTAAAGTAATTCGACCAAATTTAGTTAAAGAATTATTTGGAATGATGGGAAGATGGACTAGGGTGGTGGAGCGCATGCTTTATGGTGAACTGGCAATAAGGTGGAGGTTTGGAACTAAGAGCGCATTAGGTTACACATCATTTGGAATTAAATGTTTCGCTTATAAGAGAGTTAATGGCAGACTGCTGCATTGCTTTGTGTGTGTATTATATTCTTTTCTGGATCTCCTGGTTTTTACTGAAACATTTTGGATCAAATATAGTTTTGCCATTAATGAAAAGTGGGGCTTGCATGAGGTTACACTTTTCCAAGAGCTTCACATCTGCAATATTGAACTCTTTCCTGTAGTGAATGGCTTTGTGGGGGGGGGGGGGGGGGGTGTCCAAGTTATAGAGTAGACCCAAAAACAACATATGAGGTAAGATGTACGCAGACCTTACCCTACCTTTGTGGAGTAGAGATGTTTCCGATAGACCCTCTGCCAAAAAAAGAGAAGTTATTCAGTGAAGGGAACTGATGCACCATCTGTAGGGATATAATACACGAACAAATCTTTTAACGCGTTTTTTTTTATGATCTGACCTATCTTTTGTTCCTATTTTCCTTCTTTTGAAGGTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATTGTCCAAATGTAACTTCTCTTTATTTTTTAACCGGGACTGTAATTTTGCAAGCTTGTTTAGCGTGCCTTACGTGATACATCTCCTTGTACCTATCGTCTCAAGTTTACACAAAGCTATGTATCGAAAAACTTCACATTATTACTCTTGAGGGAAATTGGTTTGGGTCCTTAGTTTTCATTGTAATGCAAGATATTAGAGAATTATTGTTTTACCGTTGGTTCATTACTGTCTTAACTTTTTCATATATTAGTATATATATAAGGTTTATTCGATGCACACCACCTGAACTTTATACATTATTATTAAGTGTACATAAATTTTGAAGTTCTGTGTGTTGCAACTTACAAGTAATCGATTTTTATTTTACTTTTTTGGTGGCAGGAAGATCTGAGATTGTTTTTTGAAGTGATAAACTTGAGTGGCTTGTAATGACTATTCTTTTTTTAAAAAAGATAATCAATGTGTTGCTAAAAAGGGGAACACACTACATATCTCCACCATACTAAAAAACATCTGTAGTTCTCTGTAATGTGGAAGTTGGTATATAGTCTTATCAATGATGTAATCTAGAAGATATAAAGGAAATAGTAATTTATACCTTCAATATAAACATATATATTCCACCAATGTTAAAAAAGAGTCTTAAAATGAATTAAAATTGGAGATTACATTGTGGTCAATTAAAAAAAAAAAATCAAA</genome_strand>
        <mrna_strand>AGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATTGTCCAAATGTAACTTCTCTTTATTTTTTAACCGGGACTGTAATTTTGCAAGCTTGTTTAGCGTGCCTTACGTGATACATCTCCTTGTACCTATCGTCTCAAGTTTACACAAAGCTATGTATCGAAAAACTTGACATTATTACTC-TGAGGGAAATTGGTTTGGGTCC-TAGTTTTCGTTGTAATGCAAGATATTAGAGAATTATTGTTTTACCGTTGGTTCCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427825" ref_strand="-" ref_description="SGN-E427825 [STM-49-M1]">
      <seq>ggattgggagctgaaggaaagatgacagctgcacaaaggatgatggctaagatgggatggaaggagggtcagggacttgggaagctggaacaaggaattacaactccattgatggctaagaagactgataagagaggtgggttatagtggctagtgaagcaaagcagcagcagcagcagcagcagcaccaccaggcacttgaaaagaaggttaagagtgtcaatttcaatatgcttccaccaagggtcgtgctgcttaggaatatggttgttcctggcgaggttgatgatgacctagaaggtgaggtggctgaagagtgctctaaatttggtaccgtaattcgtgtcttaatatttgagataacagaaacgaatttccttcatgaagaagctgttcggatcttcattcaatttgagagagcagaacatgcaactaaagcccttatagaacttgaaggtcgattttttggcggtaggattgttcatgcctgtttctatgatgaggagaggttcggcaataatgaattagctcccatgccaggagaaattcctggcttttgaccaaacagttatggtccaaaacgaaaatctgagattttttcttgaagtgataaacttgtgtggcttgtgatgaccattcattttttaaaaaagataatcaatgtgttgctaaaaaggggaacgcactgcatatctccaccatactagaaaaatatctgaagtttttctgtaatgtggaagttggttatagtcttccacactttatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="95789" stop="91481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95489" g_stop="95211" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95210" i_stop="92640" i_length="2571">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92639" g_stop="92325" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="581" r_length="315" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92324" i_stop="91952" i_length="373">
            <donor d_prob="0.734" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91951" g_stop="91781" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="754" r_length="173" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E427825" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427825" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95489" e_stop="95211"/>
          <exon e_start="92639" e_stop="92325"/>
          <exon e_start="91951" e_stop="91781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTGGGAGCGGAAGGAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGTTGGAAGGAGGGTCAGGGACTTGGAAAGCTGGAGCAGGGAATTACGACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGTGGGGTTATAGTGGCTAGTGAAGCAAAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAACAACAACAGGCACCTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATGGTATGGATTGTTAAGATATTCTGTCAACTTATTTATTTGTTCTGCTTGCTTGGGGAGTTCTACTCTATGAGCTTGTTTAGCTGCATAAATTATGATGATTTCTTGCTAGAATAGTATCTTTCATATAGTTAAGTCGCTCAGGAATATGATATGGATTTTTATGATGTTCTATTGACTTACTTATTTGCTCTGTTTGATTTGGGATTTTTATTATATGAGCTTTTTTAGCTGTACAAATTATGATGGTTTCTTGCTAGAATAGTTTCTTTCATATGAGTTAATTTGGTTTCAGTCGTTTGAACTTTGGCTTAGTCTTACACTTAGTGCAAGTAGTTTCCAGGGGCTCAGCTGTGTTTTGAATCAGAGTTGTTTACGCTGAGGAAATTTGAAGTAGAAAAACTTTCGTCCTTTAGTGATTTCTGACCAACACACCCGTCAATTTGCTTTTATTTTTGGCCCGTAAAAGTGAAGTGCTCAGCCATGCCATTGAGAATAGTCTTTTAAATTTGGCTTCCACCTAATAAAATTGTTCACCTCATTGAGAAAAAGAAGAATTTGGCTTCCACCTTAATCTATCTTAGTAGCTTAGTTGTTTGACTACCTGAACTTTCACCTTGTTGGTGAGGGTTGGATTCCCCACCTTGTAATCCCCTTCCTCATTTCCCCTTTCCCTACCCCATTTTTTATTTTCCATTTTTTAAAAAAAAGCTATCTTTCTAATATAGCAGAGAAGAGAATTACCATTCTGCCTTTGTTATCAGAAACAAGTTTCTGATTGGTTATCTATATGAGCTCATTTAAGGTCAAATATTTGGTAGTGAGTGTTTCTGATTGTTTATTTATTAGATGATGGGTGTTAAGACTGTTAACGTTTCATTGTTGAATTTGTGTTTCTAGAGGCAGTCATGTAGTTTAATCATGTGAAAAGGTATTATGTATAATTGGCTATTGAATTGTTCATTCTTCTGACATTTGTTAGGTCTTGAGAGACAGTGTGCTACTCGTATACTTTGACAAGTTATTTAATTGTGGTAGCTAATGTACTAAGATTCACTCACAAATCCTTTTTCTTTATAAGGTTCACTGACTGGTCTTTATATAGTATACTGAACCTGTTCAACAGATTTATCTATGTGAACTTTTTAACCTTTTATTATGCGATCTATAGGTTCTTTTTTAAAAAAGGATAAAGGACCAATTAGTCTTAACCCTTATGTTTTATTTCATTAATTTGTGCCTACCAAACTATTTTGGGGTCTAACAATAAGTACTACTGGTTTCTAAGGAAAATGAGAACTATTGAGTATTAGTATAATTTTTTATCAATCTTTAATGATTGCCTGATAAGTTAAATACTAAAGTAGCTAATTAGAACATTATCCACTTCTGTCTATCATTTTCTGTTGGCATTGGCTACTTAAAACATCTCCTCAGAAATTTGTCTGTGCATTTGCTGACTGCTTTCACATTACACTAAGGGGAATCAACTTTCTCTAGATATAGGGGAAAAAAAGTACCTCTTTTCCCCTTTAAGGTCTCGTGTGCTGGTGATTACCAATATCTTCATAAATGAGGGTACAACCCTTGATTAGCTTCTATTCTTGTGATTCTAAGTATTTCTCCACTCACTCTAGGGTTTGTAATATGGTTAATTGCTCTGCTCAGCGGGGAAGTCACTTTTAGTGAATGAACCAAGGGGTTAGCTTTTACTCAAACTTCTCTAGCTTGTATGGGTCTTTGGACAAGGATATACACGCATAGATACCTTTGGATTATAGATGGTATTACAATGCGGAGGAAGTAGAGATTCATTTAGGAAGGATTGTAATGCTGGTTCATGGTGAATTTGGTTGCAGTTAAAGTGAACTATATCTGAAGAATTGTTGATGGATTGGATATATGTATTCTTTGTTTGATTAATGAGGTTTAAGTTGTATAAAGCTATGAAATACAACTTTAAAGTAATTCGACCAAATTTAGTTAAAGAATTATTTGGAATGATGGGAAGATGGACTAGGGTGGTGGAGCGCATGCTTTATGGTGAACTGGCAATAAGGTGGAGGTTTGGAACTAAGAGCGCATTAGGTTACACATCATTTGGAATTAAATGTTTCGCTTATAAGAGAGTTAATGGCAGACTGCTGCATTGCTTTGTGTGTGTATTATATTCTTTTCTGGATCTCCTGGTTTTTACTGAAACATTTTGGATCAAATATAGTTTTGCCATTAATGAAAAGTGGGGCTTGCATGAGGTTACACTTTTCCAAGAGCTTCACATCTGCAATATTGAACTCTTTCCTGTAGTGAATGGCTTTGTGGGGGGGGGGGGGGGGGGTGTCCAAGTTATAGAGTAGACCCAAAAACAACATATGAGGTAAGATGTACGCAGACCTTACCCTACCTTTGTGGAGTAGAGATGTTTCCGATAGACCCTCTGCCAAAAAAAGAGAAGTTATTCAGTGAAGGGAACTGATGCACCATCTGTAGGGATATAATACACGAACAAATCTTTTAACGCGTTTTTTTTTATGATCTGACCTATCTTTTGTTCCTATTTTCCTTCTTTTGAAGGTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATTGTCCAAATGTAACTTCTCTTTATTTTTTAACCGGGACTGTAATTTTGCAAGCTTGTTTAGCGTGCCTTACGTGATACATCTCCTTGTACCTATCGTCTCAAGTTTACACAAAGCTATGTATCGAAAAACTTCACATTATTACTCTTGAGGGAAATTGGTTTGGGTCCTTAGTTTTCATTGTAATGCAAGATATTAGAGAATTATTGTTTTACCGTTGGTTCATTACTGTCTTAACTTTTTCATATATTAGTATATATATAAGGTTTATTCGATGCACACCACCTGAACTTTATACATTATTATTAAGTGTACATAAATTTTGAAGTTCTGTGTGTTGCAACTTACAAGTAATCGATTTTTATTTTACTTTTTTGGTGGCAG-GAAGATCTGAGATTGTTTTTTGAAGTGATAAACTTGAGTGGCTTGTAATGACTATTCTTTTTTTAAAAAAGATAATCAATGTGTTGCTAAAAAGGGGAACACACTACATATCTCCACCATACTA-AAAAACATCTGTAG-TTCTCTGTAATGTGGAAGTTGGTATATAGTCTT</genome_strand>
        <mrna_strand>GGATTGGGAGCTGAAGGAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGATGGAAGGAGGGTCAGGGACTTGGGAAGCTGGAACAAGGAATTACAACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGT-GGGTTATAGTGGCTAGTGAAGCAAAGCAGCAGCAG---CAGCAGCAG---CAGC-AC--C-AC--CAGGCACTTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCTTCCACCAAGGGTCGTGCTGCTTAGGAATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAATTTGGTACCGTAATTCGTGTCTTAATATTTGAGATAACAGAAACGAATTTCCTTCATGAAGAAGCTGTTCGGATCTTCATTCAATTTGAGAGAGCAGAACATGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTATGATGAGGAGAGGTTCGGCAATAATGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATGGTCCAAAA.....................................................................................................................................................................................................................................................................................................................................................................................CGAAAATCTGAGATTTTTTCTTGAAGTGATAAACTTGTGTGGCTTGTGATGACCATTCATTTTTTAAAAAAGATAATCAATGTGTTGCTAAAAAGGGGAACGCACTGCATATCTCCACCATACTAGAAAAATATCTGAAGTTTTTCTGTAATGTGGAAGTTGGT-TATAGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301258" ref_strand="-" ref_description="SGN-E301258 [cLEW-24-B19]">
      <seq>gggtcgtgctgcttaggaatatggttggtcctggcgaggttgatgatgacctagaaggtgaggtggctgaagagtgctctaagtttggtactgtaactcgtgtcttaatatttgagattacagaaacaaatttccctcatgaagaagctgttcggatattcgttcaatttgagagagcagaacacgcaactaaagcccttatagaacttgaaggtcgattttttggcggtaggattgttcatgcctgtttctacgacgaggagaggtttggcaataacgaattagctcccatgccaggagaaattcctggcttttgaccaaacagttattgtccaaatgtaacttctctttattttttaaccgggactgtaattttgcaagcttgtttagcgtgccttacgtgatacatctccttgtacctatcgtctcaagtttacacaaagctatgtatcgaaaaacttgacattattactctgagggaaattggtttgggtcctagttttcgttgtaatgcaagatattagagaattattgttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="95533" stop="91822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95233" g_stop="95211" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95210" i_stop="92640" i_length="2571">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92639" g_stop="92121" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="540" r_length="517" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E301258" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301258" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95233" e_stop="95211"/>
          <exon e_start="92639" e_stop="92121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCGTGCTGCTTAGGAATATGGTATGGATTGTTAAGATATTCTGTCAACTTATTTATTTGTTCTGCTTGCTTGGGGAGTTCTACTCTATGAGCTTGTTTAGCTGCATAAATTATGATGATTTCTTGCTAGAATAGTATCTTTCATATAGTTAAGTCGCTCAGGAATATGATATGGATTTTTATGATGTTCTATTGACTTACTTATTTGCTCTGTTTGATTTGGGATTTTTATTATATGAGCTTTTTTAGCTGTACAAATTATGATGGTTTCTTGCTAGAATAGTTTCTTTCATATGAGTTAATTTGGTTTCAGTCGTTTGAACTTTGGCTTAGTCTTACACTTAGTGCAAGTAGTTTCCAGGGGCTCAGCTGTGTTTTGAATCAGAGTTGTTTACGCTGAGGAAATTTGAAGTAGAAAAACTTTCGTCCTTTAGTGATTTCTGACCAACACACCCGTCAATTTGCTTTTATTTTTGGCCCGTAAAAGTGAAGTGCTCAGCCATGCCATTGAGAATAGTCTTTTAAATTTGGCTTCCACCTAATAAAATTGTTCACCTCATTGAGAAAAAGAAGAATTTGGCTTCCACCTTAATCTATCTTAGTAGCTTAGTTGTTTGACTACCTGAACTTTCACCTTGTTGGTGAGGGTTGGATTCCCCACCTTGTAATCCCCTTCCTCATTTCCCCTTTCCCTACCCCATTTTTTATTTTCCATTTTTTAAAAAAAAGCTATCTTTCTAATATAGCAGAGAAGAGAATTACCATTCTGCCTTTGTTATCAGAAACAAGTTTCTGATTGGTTATCTATATGAGCTCATTTAAGGTCAAATATTTGGTAGTGAGTGTTTCTGATTGTTTATTTATTAGATGATGGGTGTTAAGACTGTTAACGTTTCATTGTTGAATTTGTGTTTCTAGAGGCAGTCATGTAGTTTAATCATGTGAAAAGGTATTATGTATAATTGGCTATTGAATTGTTCATTCTTCTGACATTTGTTAGGTCTTGAGAGACAGTGTGCTACTCGTATACTTTGACAAGTTATTTAATTGTGGTAGCTAATGTACTAAGATTCACTCACAAATCCTTTTTCTTTATAAGGTTCACTGACTGGTCTTTATATAGTATACTGAACCTGTTCAACAGATTTATCTATGTGAACTTTTTAACCTTTTATTATGCGATCTATAGGTTCTTTTTTAAAAAAGGATAAAGGACCAATTAGTCTTAACCCTTATGTTTTATTTCATTAATTTGTGCCTACCAAACTATTTTGGGGTCTAACAATAAGTACTACTGGTTTCTAAGGAAAATGAGAACTATTGAGTATTAGTATAATTTTTTATCAATCTTTAATGATTGCCTGATAAGTTAAATACTAAAGTAGCTAATTAGAACATTATCCACTTCTGTCTATCATTTTCTGTTGGCATTGGCTACTTAAAACATCTCCTCAGAAATTTGTCTGTGCATTTGCTGACTGCTTTCACATTACACTAAGGGGAATCAACTTTCTCTAGATATAGGGGAAAAAAAGTACCTCTTTTCCCCTTTAAGGTCTCGTGTGCTGGTGATTACCAATATCTTCATAAATGAGGGTACAACCCTTGATTAGCTTCTATTCTTGTGATTCTAAGTATTTCTCCACTCACTCTAGGGTTTGTAATATGGTTAATTGCTCTGCTCAGCGGGGAAGTCACTTTTAGTGAATGAACCAAGGGGTTAGCTTTTACTCAAACTTCTCTAGCTTGTATGGGTCTTTGGACAAGGATATACACGCATAGATACCTTTGGATTATAGATGGTATTACAATGCGGAGGAAGTAGAGATTCATTTAGGAAGGATTGTAATGCTGGTTCATGGTGAATTTGGTTGCAGTTAAAGTGAACTATATCTGAAGAATTGTTGATGGATTGGATATATGTATTCTTTGTTTGATTAATGAGGTTTAAGTTGTATAAAGCTATGAAATACAACTTTAAAGTAATTCGACCAAATTTAGTTAAAGAATTATTTGGAATGATGGGAAGATGGACTAGGGTGGTGGAGCGCATGCTTTATGGTGAACTGGCAATAAGGTGGAGGTTTGGAACTAAGAGCGCATTAGGTTACACATCATTTGGAATTAAATGTTTCGCTTATAAGAGAGTTAATGGCAGACTGCTGCATTGCTTTGTGTGTGTATTATATTCTTTTCTGGATCTCCTGGTTTTTACTGAAACATTTTGGATCAAATATAGTTTTGCCATTAATGAAAAGTGGGGCTTGCATGAGGTTACACTTTTCCAAGAGCTTCACATCTGCAATATTGAACTCTTTCCTGTAGTGAATGGCTTTGTGGGGGGGGGGGGGGGGGGTGTCCAAGTTATAGAGTAGACCCAAAAACAACATATGAGGTAAGATGTACGCAGACCTTACCCTACCTTTGTGGAGTAGAGATGTTTCCGATAGACCCTCTGCCAAAAAAAGAGAAGTTATTCAGTGAAGGGAACTGATGCACCATCTGTAGGGATATAATACACGAACAAATCTTTTAACGCGTTTTTTTTTATGATCTGACCTATCTTTTGTTCCTATTTTCCTTCTTTTGAAGGTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATTGTCCAAATGTAACTTCTCTTTATTTTTTAACCGGGACTGTAATTTTGCAAGCTTGTTTAGCGTGCCTTACGTGATACATCTCCTTGTACCTATCGTCTCAAGTTTACACAAAGCTATGTATCGAAAAACTTCACATTATTACTCTTGAGGGAAATTGGTTTGGGTCCTTAGTTTTCATTGTAATGCAAGATATTAGAGAATTATTGTTTTAC</genome_strand>
        <mrna_strand>GGGTCGTGCTGCTTAGGAATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATTGTCCAAATGTAACTTCTCTTTATTTTTTAACCGGGACTGTAATTTTGCAAGCTTGTTTAGCGTGCCTTACGTGATACATCTCCTTGTACCTATCGTCTCAAGTTTACACAAAGCTATGTATCGAAAAACTTGACATTATTACTC-TGAGGGAAATTGGTTTGGGTCC-TAGTTTTCGTTGTAATGCAAGATATTAGAGAATTATTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311145" ref_strand="+" ref_description="SGN-E311145 [cLEZ-16-B6]">
      <seq>aaagcagcatcagcagcaacagcaacaacaacaacaacaacaacaacaggcacctgaaaagaaggttaagagtgtcaatttcaatatgcctccaacaagggtcgtgctgcttaggaatatggttggtcctggcgaggttgatgatgacctagaaggtgaggtggctgaagagtgctctaagtttggtactgtaactcgtgtcttaatatttgagattacagaaacaaatttccctcatgaagaagctgttcggatattcgttcaatttgagagagcagaacacgcaactaaagcccttatagaacttgaaggtcgattttttggcggtaggattgttcatgcctgtttctacgacgaggagaggtttggcaataacgaattagctcccatgccaggagaaattcctggcttttgaccaaacagttattgtccaaatgtaacttctctttattttttaaccgggactgtaattttgcaagcttgtttagcgtgccttacgtgatacatctccttgtacctatcgtctcaagtttacacaaagctatgtatcgaaaaacttgacattattactctgaagggaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="95626" stop="91879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95333" g_stop="95211" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95210" i_stop="92640" i_length="2571">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92639" g_stop="92175" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="586" r_length="465" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E311145" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95333" e_stop="95211"/>
          <exon e_start="92639" e_stop="92175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAAAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAACAACAACAGGCACCTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATGGTATGGATTGTTAAGATATTCTGTCAACTTATTTATTTGTTCTGCTTGCTTGGGGAGTTCTACTCTATGAGCTTGTTTAGCTGCATAAATTATGATGATTTCTTGCTAGAATAGTATCTTTCATATAGTTAAGTCGCTCAGGAATATGATATGGATTTTTATGATGTTCTATTGACTTACTTATTTGCTCTGTTTGATTTGGGATTTTTATTATATGAGCTTTTTTAGCTGTACAAATTATGATGGTTTCTTGCTAGAATAGTTTCTTTCATATGAGTTAATTTGGTTTCAGTCGTTTGAACTTTGGCTTAGTCTTACACTTAGTGCAAGTAGTTTCCAGGGGCTCAGCTGTGTTTTGAATCAGAGTTGTTTACGCTGAGGAAATTTGAAGTAGAAAAACTTTCGTCCTTTAGTGATTTCTGACCAACACACCCGTCAATTTGCTTTTATTTTTGGCCCGTAAAAGTGAAGTGCTCAGCCATGCCATTGAGAATAGTCTTTTAAATTTGGCTTCCACCTAATAAAATTGTTCACCTCATTGAGAAAAAGAAGAATTTGGCTTCCACCTTAATCTATCTTAGTAGCTTAGTTGTTTGACTACCTGAACTTTCACCTTGTTGGTGAGGGTTGGATTCCCCACCTTGTAATCCCCTTCCTCATTTCCCCTTTCCCTACCCCATTTTTTATTTTCCATTTTTTAAAAAAAAGCTATCTTTCTAATATAGCAGAGAAGAGAATTACCATTCTGCCTTTGTTATCAGAAACAAGTTTCTGATTGGTTATCTATATGAGCTCATTTAAGGTCAAATATTTGGTAGTGAGTGTTTCTGATTGTTTATTTATTAGATGATGGGTGTTAAGACTGTTAACGTTTCATTGTTGAATTTGTGTTTCTAGAGGCAGTCATGTAGTTTAATCATGTGAAAAGGTATTATGTATAATTGGCTATTGAATTGTTCATTCTTCTGACATTTGTTAGGTCTTGAGAGACAGTGTGCTACTCGTATACTTTGACAAGTTATTTAATTGTGGTAGCTAATGTACTAAGATTCACTCACAAATCCTTTTTCTTTATAAGGTTCACTGACTGGTCTTTATATAGTATACTGAACCTGTTCAACAGATTTATCTATGTGAACTTTTTAACCTTTTATTATGCGATCTATAGGTTCTTTTTTAAAAAAGGATAAAGGACCAATTAGTCTTAACCCTTATGTTTTATTTCATTAATTTGTGCCTACCAAACTATTTTGGGGTCTAACAATAAGTACTACTGGTTTCTAAGGAAAATGAGAACTATTGAGTATTAGTATAATTTTTTATCAATCTTTAATGATTGCCTGATAAGTTAAATACTAAAGTAGCTAATTAGAACATTATCCACTTCTGTCTATCATTTTCTGTTGGCATTGGCTACTTAAAACATCTCCTCAGAAATTTGTCTGTGCATTTGCTGACTGCTTTCACATTACACTAAGGGGAATCAACTTTCTCTAGATATAGGGGAAAAAAAGTACCTCTTTTCCCCTTTAAGGTCTCGTGTGCTGGTGATTACCAATATCTTCATAAATGAGGGTACAACCCTTGATTAGCTTCTATTCTTGTGATTCTAAGTATTTCTCCACTCACTCTAGGGTTTGTAATATGGTTAATTGCTCTGCTCAGCGGGGAAGTCACTTTTAGTGAATGAACCAAGGGGTTAGCTTTTACTCAAACTTCTCTAGCTTGTATGGGTCTTTGGACAAGGATATACACGCATAGATACCTTTGGATTATAGATGGTATTACAATGCGGAGGAAGTAGAGATTCATTTAGGAAGGATTGTAATGCTGGTTCATGGTGAATTTGGTTGCAGTTAAAGTGAACTATATCTGAAGAATTGTTGATGGATTGGATATATGTATTCTTTGTTTGATTAATGAGGTTTAAGTTGTATAAAGCTATGAAATACAACTTTAAAGTAATTCGACCAAATTTAGTTAAAGAATTATTTGGAATGATGGGAAGATGGACTAGGGTGGTGGAGCGCATGCTTTATGGTGAACTGGCAATAAGGTGGAGGTTTGGAACTAAGAGCGCATTAGGTTACACATCATTTGGAATTAAATGTTTCGCTTATAAGAGAGTTAATGGCAGACTGCTGCATTGCTTTGTGTGTGTATTATATTCTTTTCTGGATCTCCTGGTTTTTACTGAAACATTTTGGATCAAATATAGTTTTGCCATTAATGAAAAGTGGGGCTTGCATGAGGTTACACTTTTCCAAGAGCTTCACATCTGCAATATTGAACTCTTTCCTGTAGTGAATGGCTTTGTGGGGGGGGGGGGGGGGGGTGTCCAAGTTATAGAGTAGACCCAAAAACAACATATGAGGTAAGATGTACGCAGACCTTACCCTACCTTTGTGGAGTAGAGATGTTTCCGATAGACCCTCTGCCAAAAAAAGAGAAGTTATTCAGTGAAGGGAACTGATGCACCATCTGTAGGGATATAATACACGAACAAATCTTTTAACGCGTTTTTTTTTATGATCTGACCTATCTTTTGTTCCTATTTTCCTTCTTTTGAAGGTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATTGTCCAAATGTAACTTCTCTTTATTTTTTAACCGGGACTGTAATTTTGCAAGCTTGTTTAGCGTGCCTTACGTGATACATCTCCTTGTACCTATCGTCTCAAGTTTACACAAAGCTATGTATCGAAAAACTTCACATTATTACTCTTGAGGGAAATTGG</genome_strand>
        <mrna_strand>AAAGC-A-GCATCAGCAGCAACAGCAACAACAACAACAACAACAACAACAGGCACCTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATTGTCCAAATGTAACTTCTCTTTATTTTTTAACCGGGACTGTAATTTTGCAAGCTTGTTTAGCGTGCCTTACGTGATACATCTCCTTGTACCTATCGTCTCAAGTTTACACAAAGCTATGTATCGAAAAACTTGACATTATTACTCTGAAGGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345025" ref_strand="+" ref_description="SGN-E345025 [cTOF-22-P5]">
      <seq>gagagtgggggtttgggattgggagcggaaggaaagatgacagctgcacaaaggatgatggctaagatgggttggaaggagggtcagggacttggaaagctggagcagggaattacgactccattgatggctaagaagactgataagagaggtggggttatagtggctagtgaagcaaagcagcagcagcagcaacagcaacaacaacaacaacaacaacaacaggcacctgaaaagaaggttaagagtgtcaatttcaatatgcctccaacaagggtcgtgctgcttaggaatatggttggtcctggcgaggttgatgatgacctagaaggtgaggtggctgaagagtgctctaagtttggtactgtaactcgtgtcttaatatttgagattacagaaacaaatttccctcatgaagaagctgttcggatattcgttcaatttgagagagcagaacacgcaactaaagcccttatagaacttgaaggtcgattttttggcggtaggattgttcatgcctgtttctacgacgaggagaggtttggcaataacgaattagctcccatgccaggagaaattcctggcttttgaccaaacagttattgtccaaatgtaacttctctttattttttaaccgggactgtaattntgcaagcttgtttagcgtgccttacgtgatacatctncttgtacctatcgtctcaagtttacacaaagctatgtatcgaaaaacttgacattattactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="95804" stop="91889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95504" g_stop="95211" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95210" i_stop="92640" i_length="2571">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92639" g_stop="92189" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="748" r_length="451" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E345025" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95504" e_stop="95211"/>
          <exon e_start="92639" e_stop="92189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTGGGGGTTTGGGATTGGGAGCGGAAGGAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGTTGGAAGGAGGGTCAGGGACTTGGAAAGCTGGAGCAGGGAATTACGACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGTGGGGTTATAGTGGCTAGTGAAGC-AA--AGCAGCAGCAGCAACAGCAGCAGCAACAACAACAACAACAACAGGCACCTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATGGTATGGATTGTTAAGATATTCTGTCAACTTATTTATTTGTTCTGCTTGCTTGGGGAGTTCTACTCTATGAGCTTGTTTAGCTGCATAAATTATGATGATTTCTTGCTAGAATAGTATCTTTCATATAGTTAAGTCGCTCAGGAATATGATATGGATTTTTATGATGTTCTATTGACTTACTTATTTGCTCTGTTTGATTTGGGATTTTTATTATATGAGCTTTTTTAGCTGTACAAATTATGATGGTTTCTTGCTAGAATAGTTTCTTTCATATGAGTTAATTTGGTTTCAGTCGTTTGAACTTTGGCTTAGTCTTACACTTAGTGCAAGTAGTTTCCAGGGGCTCAGCTGTGTTTTGAATCAGAGTTGTTTACGCTGAGGAAATTTGAAGTAGAAAAACTTTCGTCCTTTAGTGATTTCTGACCAACACACCCGTCAATTTGCTTTTATTTTTGGCCCGTAAAAGTGAAGTGCTCAGCCATGCCATTGAGAATAGTCTTTTAAATTTGGCTTCCACCTAATAAAATTGTTCACCTCATTGAGAAAAAGAAGAATTTGGCTTCCACCTTAATCTATCTTAGTAGCTTAGTTGTTTGACTACCTGAACTTTCACCTTGTTGGTGAGGGTTGGATTCCCCACCTTGTAATCCCCTTCCTCATTTCCCCTTTCCCTACCCCATTTTTTATTTTCCATTTTTTAAAAAAAAGCTATCTTTCTAATATAGCAGAGAAGAGAATTACCATTCTGCCTTTGTTATCAGAAACAAGTTTCTGATTGGTTATCTATATGAGCTCATTTAAGGTCAAATATTTGGTAGTGAGTGTTTCTGATTGTTTATTTATTAGATGATGGGTGTTAAGACTGTTAACGTTTCATTGTTGAATTTGTGTTTCTAGAGGCAGTCATGTAGTTTAATCATGTGAAAAGGTATTATGTATAATTGGCTATTGAATTGTTCATTCTTCTGACATTTGTTAGGTCTTGAGAGACAGTGTGCTACTCGTATACTTTGACAAGTTATTTAATTGTGGTAGCTAATGTACTAAGATTCACTCACAAATCCTTTTTCTTTATAAGGTTCACTGACTGGTCTTTATATAGTATACTGAACCTGTTCAACAGATTTATCTATGTGAACTTTTTAACCTTTTATTATGCGATCTATAGGTTCTTTTTTAAAAAAGGATAAAGGACCAATTAGTCTTAACCCTTATGTTTTATTTCATTAATTTGTGCCTACCAAACTATTTTGGGGTCTAACAATAAGTACTACTGGTTTCTAAGGAAAATGAGAACTATTGAGTATTAGTATAATTTTTTATCAATCTTTAATGATTGCCTGATAAGTTAAATACTAAAGTAGCTAATTAGAACATTATCCACTTCTGTCTATCATTTTCTGTTGGCATTGGCTACTTAAAACATCTCCTCAGAAATTTGTCTGTGCATTTGCTGACTGCTTTCACATTACACTAAGGGGAATCAACTTTCTCTAGATATAGGGGAAAAAAAGTACCTCTTTTCCCCTTTAAGGTCTCGTGTGCTGGTGATTACCAATATCTTCATAAATGAGGGTACAACCCTTGATTAGCTTCTATTCTTGTGATTCTAAGTATTTCTCCACTCACTCTAGGGTTTGTAATATGGTTAATTGCTCTGCTCAGCGGGGAAGTCACTTTTAGTGAATGAACCAAGGGGTTAGCTTTTACTCAAACTTCTCTAGCTTGTATGGGTCTTTGGACAAGGATATACACGCATAGATACCTTTGGATTATAGATGGTATTACAATGCGGAGGAAGTAGAGATTCATTTAGGAAGGATTGTAATGCTGGTTCATGGTGAATTTGGTTGCAGTTAAAGTGAACTATATCTGAAGAATTGTTGATGGATTGGATATATGTATTCTTTGTTTGATTAATGAGGTTTAAGTTGTATAAAGCTATGAAATACAACTTTAAAGTAATTCGACCAAATTTAGTTAAAGAATTATTTGGAATGATGGGAAGATGGACTAGGGTGGTGGAGCGCATGCTTTATGGTGAACTGGCAATAAGGTGGAGGTTTGGAACTAAGAGCGCATTAGGTTACACATCATTTGGAATTAAATGTTTCGCTTATAAGAGAGTTAATGGCAGACTGCTGCATTGCTTTGTGTGTGTATTATATTCTTTTCTGGATCTCCTGGTTTTTACTGAAACATTTTGGATCAAATATAGTTTTGCCATTAATGAAAAGTGGGGCTTGCATGAGGTTACACTTTTCCAAGAGCTTCACATCTGCAATATTGAACTCTTTCCTGTAGTGAATGGCTTTGTGGGGGGGGGGGGGGGGGGTGTCCAAGTTATAGAGTAGACCCAAAAACAACATATGAGGTAAGATGTACGCAGACCTTACCCTACCTTTGTGGAGTAGAGATGTTTCCGATAGACCCTCTGCCAAAAAAAGAGAAGTTATTCAGTGAAGGGAACTGATGCACCATCTGTAGGGATATAATACACGAACAAATCTTTTAACGCGTTTTTTTTTATGATCTGACCTATCTTTTGTTCCTATTTTCCTTCTTTTGAAGGTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATTGTCCAAATGTAACTTCTCTTTATTTTTTAACCGGGACTGTAATTTTGCAAGCTTGTTTAGCGTGCCTTACGTGATACATCTCCTTGTACCTATCGTCTCAAGTTTACACAAAGCTATGTATCGAAAAACTTCACATTATTACTC</genome_strand>
        <mrna_strand>GAGAGTGGGGGTTTGGGATTGGGAGCGGAAGGAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGTTGGAAGGAGGGTCAGGGACTTGGAAAGCTGGAGCAGGGAATTACGACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGTGGGGTTATAGTGGCTAGTGAAGCAAAGCAGCAGCAGCAGCAACAGCAACAACAACAACAACAACAACAACAGGCACCTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATTGTCCAAATGTAACTTCTCTTTATTTTTTAACCGGGACTGTAATTNTGCAAGCTTGTTTAGCGTGCCTTACGTGATACATCTNCTTGTACCTATCGTCTCAAGTTTACACAAAGCTATGTATCGAAAAACTTGACATTATTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576367" ref_strand="+" ref_description="SGN-E576367 [59575]">
      <seq>gaaagatgacagctgcacaaaggatgatggctaagatgggatggaaggagggtcagggacttgggaagctggaacaaggaattacaactccattgatggctaagaagactgataagagaggtggggttatagtggctagtgaagcaaagcagcagcagcagcaacaacaacaggcacctgaaaagaaggttaagagtgtcaatttcaatatgcctccaacaagggtcgtgctgcttaggaatatggttggtcctggcgaggttgatgatgacctagaaggtgaggtggctgaagagtgctctaaatttggtaccgtaactcgtgtcttgatatttgagataacagaaacgaatttccctcatgaagaagctgttcggatcttcattcaatttgagagagcagaacatgcaactaaagcccttatagaacttgaaggtcgattttttggcggtaggattgttcatgcctgtttctatgacgaggagaggttcggcaataatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="95773" stop="92082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95473" g_stop="95211" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95210" i_stop="92640" i_length="2571">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92639" g_stop="92382" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="503" r_length="258" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E576367" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.036" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95473" e_stop="95211"/>
          <exon e_start="92639" e_stop="92382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGTTGGAAGGAGGGTCAGGGACTTGGAAAGCTGGAGCAGGGAATTACGACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGTGGGGTTATAGTGGCTAGTGAAGCAAAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAACAACAACAGGCACCTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATGGTATGGATTGTTAAGATATTCTGTCAACTTATTTATTTGTTCTGCTTGCTTGGGGAGTTCTACTCTATGAGCTTGTTTAGCTGCATAAATTATGATGATTTCTTGCTAGAATAGTATCTTTCATATAGTTAAGTCGCTCAGGAATATGATATGGATTTTTATGATGTTCTATTGACTTACTTATTTGCTCTGTTTGATTTGGGATTTTTATTATATGAGCTTTTTTAGCTGTACAAATTATGATGGTTTCTTGCTAGAATAGTTTCTTTCATATGAGTTAATTTGGTTTCAGTCGTTTGAACTTTGGCTTAGTCTTACACTTAGTGCAAGTAGTTTCCAGGGGCTCAGCTGTGTTTTGAATCAGAGTTGTTTACGCTGAGGAAATTTGAAGTAGAAAAACTTTCGTCCTTTAGTGATTTCTGACCAACACACCCGTCAATTTGCTTTTATTTTTGGCCCGTAAAAGTGAAGTGCTCAGCCATGCCATTGAGAATAGTCTTTTAAATTTGGCTTCCACCTAATAAAATTGTTCACCTCATTGAGAAAAAGAAGAATTTGGCTTCCACCTTAATCTATCTTAGTAGCTTAGTTGTTTGACTACCTGAACTTTCACCTTGTTGGTGAGGGTTGGATTCCCCACCTTGTAATCCCCTTCCTCATTTCCCCTTTCCCTACCCCATTTTTTATTTTCCATTTTTTAAAAAAAAGCTATCTTTCTAATATAGCAGAGAAGAGAATTACCATTCTGCCTTTGTTATCAGAAACAAGTTTCTGATTGGTTATCTATATGAGCTCATTTAAGGTCAAATATTTGGTAGTGAGTGTTTCTGATTGTTTATTTATTAGATGATGGGTGTTAAGACTGTTAACGTTTCATTGTTGAATTTGTGTTTCTAGAGGCAGTCATGTAGTTTAATCATGTGAAAAGGTATTATGTATAATTGGCTATTGAATTGTTCATTCTTCTGACATTTGTTAGGTCTTGAGAGACAGTGTGCTACTCGTATACTTTGACAAGTTATTTAATTGTGGTAGCTAATGTACTAAGATTCACTCACAAATCCTTTTTCTTTATAAGGTTCACTGACTGGTCTTTATATAGTATACTGAACCTGTTCAACAGATTTATCTATGTGAACTTTTTAACCTTTTATTATGCGATCTATAGGTTCTTTTTTAAAAAAGGATAAAGGACCAATTAGTCTTAACCCTTATGTTTTATTTCATTAATTTGTGCCTACCAAACTATTTTGGGGTCTAACAATAAGTACTACTGGTTTCTAAGGAAAATGAGAACTATTGAGTATTAGTATAATTTTTTATCAATCTTTAATGATTGCCTGATAAGTTAAATACTAAAGTAGCTAATTAGAACATTATCCACTTCTGTCTATCATTTTCTGTTGGCATTGGCTACTTAAAACATCTCCTCAGAAATTTGTCTGTGCATTTGCTGACTGCTTTCACATTACACTAAGGGGAATCAACTTTCTCTAGATATAGGGGAAAAAAAGTACCTCTTTTCCCCTTTAAGGTCTCGTGTGCTGGTGATTACCAATATCTTCATAAATGAGGGTACAACCCTTGATTAGCTTCTATTCTTGTGATTCTAAGTATTTCTCCACTCACTCTAGGGTTTGTAATATGGTTAATTGCTCTGCTCAGCGGGGAAGTCACTTTTAGTGAATGAACCAAGGGGTTAGCTTTTACTCAAACTTCTCTAGCTTGTATGGGTCTTTGGACAAGGATATACACGCATAGATACCTTTGGATTATAGATGGTATTACAATGCGGAGGAAGTAGAGATTCATTTAGGAAGGATTGTAATGCTGGTTCATGGTGAATTTGGTTGCAGTTAAAGTGAACTATATCTGAAGAATTGTTGATGGATTGGATATATGTATTCTTTGTTTGATTAATGAGGTTTAAGTTGTATAAAGCTATGAAATACAACTTTAAAGTAATTCGACCAAATTTAGTTAAAGAATTATTTGGAATGATGGGAAGATGGACTAGGGTGGTGGAGCGCATGCTTTATGGTGAACTGGCAATAAGGTGGAGGTTTGGAACTAAGAGCGCATTAGGTTACACATCATTTGGAATTAAATGTTTCGCTTATAAGAGAGTTAATGGCAGACTGCTGCATTGCTTTGTGTGTGTATTATATTCTTTTCTGGATCTCCTGGTTTTTACTGAAACATTTTGGATCAAATATAGTTTTGCCATTAATGAAAAGTGGGGCTTGCATGAGGTTACACTTTTCCAAGAGCTTCACATCTGCAATATTGAACTCTTTCCTGTAGTGAATGGCTTTGTGGGGGGGGGGGGGGGGGGTGTCCAAGTTATAGAGTAGACCCAAAAACAACATATGAGGTAAGATGTACGCAGACCTTACCCTACCTTTGTGGAGTAGAGATGTTTCCGATAGACCCTCTGCCAAAAAAAGAGAAGTTATTCAGTGAAGGGAACTGATGCACCATCTGTAGGGATATAATACACGAACAAATCTTTTAACGCGTTTTTTTTTATGATCTGACCTATCTTTTGTTCCTATTTTCCTTCTTTTGAAGGTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAA</genome_strand>
        <mrna_strand>GAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGATGGAAGGAGGGTCAGGGACTTGGGAAGCTGGAACAAGGAATTACAACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGTGGGGTTATAGTGGCTAGTGAAGC--A--A--AGCAG---CAGCAGCAG---------CAACAACAACAGGCACCTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAATTTGGTACCGTAACTCGTGTCTTGATATTTGAGATAACAGAAACGAATTTCCCTCATGAAGAAGCTGTTCGGATCTTCATTCAATTTGAGAGAGCAGAACATGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTATGACGAGGAGAGGTTCGGCAATAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312539" ref_strand="+" ref_description="SGN-E312539 [cLEZ-20-H16]">
      <seq>gagggtattgggaggtcagagagtgggggtttgggattgggagcggaaggaaagatgacagctgcacaaaggatgatggctaagatgggttggaaggagggtcagggacttggaaagctggagcagggaattacgactccattgatggctaagaagactgataagagaggtggggttatagtggctagtgcagcagcagcagcaacagcaacaacaacaacaacaacaacaacaggcacctgaaaagaaggttaagagtgtcaatttcaatatgcctccaacaagggtcgtgctgcttaggaatatggttggtcctggcgaggttgatgatgacctagaaggtgaggtggctgaagagtgctctaagtttggtactgtaactcgtgtcttaatatttgagattacagaaacaaatttccctcatgaagaagctgttcggatattcgttcaatttgagagagcagaacacgcaactaaagcccttatagaacttgaaggtcgattttttggcggtaggattgttcatgcctgtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="95818" stop="92110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95522" g_stop="95211" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95210" i_stop="92640" i_length="2571">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92639" g_stop="92410" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="537" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E312539" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95522" e_stop="95211"/>
          <exon e_start="92639" e_stop="92410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTATTGGGAGGTCAGAGAGTGGGGGTTTGGGATTGGGAGCGGAAGGAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGTTGGAAGGAGGGTCAGGGACTTGGAAAGCTGGAGCAGGGAATTACGACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGTGGGGTTATAGTGGCTAGTGAAGCAAAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAACAACAACAGGCACCTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATGGTATGGATTGTTAAGATATTCTGTCAACTTATTTATTTGTTCTGCTTGCTTGGGGAGTTCTACTCTATGAGCTTGTTTAGCTGCATAAATTATGATGATTTCTTGCTAGAATAGTATCTTTCATATAGTTAAGTCGCTCAGGAATATGATATGGATTTTTATGATGTTCTATTGACTTACTTATTTGCTCTGTTTGATTTGGGATTTTTATTATATGAGCTTTTTTAGCTGTACAAATTATGATGGTTTCTTGCTAGAATAGTTTCTTTCATATGAGTTAATTTGGTTTCAGTCGTTTGAACTTTGGCTTAGTCTTACACTTAGTGCAAGTAGTTTCCAGGGGCTCAGCTGTGTTTTGAATCAGAGTTGTTTACGCTGAGGAAATTTGAAGTAGAAAAACTTTCGTCCTTTAGTGATTTCTGACCAACACACCCGTCAATTTGCTTTTATTTTTGGCCCGTAAAAGTGAAGTGCTCAGCCATGCCATTGAGAATAGTCTTTTAAATTTGGCTTCCACCTAATAAAATTGTTCACCTCATTGAGAAAAAGAAGAATTTGGCTTCCACCTTAATCTATCTTAGTAGCTTAGTTGTTTGACTACCTGAACTTTCACCTTGTTGGTGAGGGTTGGATTCCCCACCTTGTAATCCCCTTCCTCATTTCCCCTTTCCCTACCCCATTTTTTATTTTCCATTTTTTAAAAAAAAGCTATCTTTCTAATATAGCAGAGAAGAGAATTACCATTCTGCCTTTGTTATCAGAAACAAGTTTCTGATTGGTTATCTATATGAGCTCATTTAAGGTCAAATATTTGGTAGTGAGTGTTTCTGATTGTTTATTTATTAGATGATGGGTGTTAAGACTGTTAACGTTTCATTGTTGAATTTGTGTTTCTAGAGGCAGTCATGTAGTTTAATCATGTGAAAAGGTATTATGTATAATTGGCTATTGAATTGTTCATTCTTCTGACATTTGTTAGGTCTTGAGAGACAGTGTGCTACTCGTATACTTTGACAAGTTATTTAATTGTGGTAGCTAATGTACTAAGATTCACTCACAAATCCTTTTTCTTTATAAGGTTCACTGACTGGTCTTTATATAGTATACTGAACCTGTTCAACAGATTTATCTATGTGAACTTTTTAACCTTTTATTATGCGATCTATAGGTTCTTTTTTAAAAAAGGATAAAGGACCAATTAGTCTTAACCCTTATGTTTTATTTCATTAATTTGTGCCTACCAAACTATTTTGGGGTCTAACAATAAGTACTACTGGTTTCTAAGGAAAATGAGAACTATTGAGTATTAGTATAATTTTTTATCAATCTTTAATGATTGCCTGATAAGTTAAATACTAAAGTAGCTAATTAGAACATTATCCACTTCTGTCTATCATTTTCTGTTGGCATTGGCTACTTAAAACATCTCCTCAGAAATTTGTCTGTGCATTTGCTGACTGCTTTCACATTACACTAAGGGGAATCAACTTTCTCTAGATATAGGGGAAAAAAAGTACCTCTTTTCCCCTTTAAGGTCTCGTGTGCTGGTGATTACCAATATCTTCATAAATGAGGGTACAACCCTTGATTAGCTTCTATTCTTGTGATTCTAAGTATTTCTCCACTCACTCTAGGGTTTGTAATATGGTTAATTGCTCTGCTCAGCGGGGAAGTCACTTTTAGTGAATGAACCAAGGGGTTAGCTTTTACTCAAACTTCTCTAGCTTGTATGGGTCTTTGGACAAGGATATACACGCATAGATACCTTTGGATTATAGATGGTATTACAATGCGGAGGAAGTAGAGATTCATTTAGGAAGGATTGTAATGCTGGTTCATGGTGAATTTGGTTGCAGTTAAAGTGAACTATATCTGAAGAATTGTTGATGGATTGGATATATGTATTCTTTGTTTGATTAATGAGGTTTAAGTTGTATAAAGCTATGAAATACAACTTTAAAGTAATTCGACCAAATTTAGTTAAAGAATTATTTGGAATGATGGGAAGATGGACTAGGGTGGTGGAGCGCATGCTTTATGGTGAACTGGCAATAAGGTGGAGGTTTGGAACTAAGAGCGCATTAGGTTACACATCATTTGGAATTAAATGTTTCGCTTATAAGAGAGTTAATGGCAGACTGCTGCATTGCTTTGTGTGTGTATTATATTCTTTTCTGGATCTCCTGGTTTTTACTGAAACATTTTGGATCAAATATAGTTTTGCCATTAATGAAAAGTGGGGCTTGCATGAGGTTACACTTTTCCAAGAGCTTCACATCTGCAATATTGAACTCTTTCCTGTAGTGAATGGCTTTGTGGGGGGGGGGGGGGGGGGTGTCCAAGTTATAGAGTAGACCCAAAAACAACATATGAGGTAAGATGTACGCAGACCTTACCCTACCTTTGTGGAGTAGAGATGTTTCCGATAGACCCTCTGCCAAAAAAAGAGAAGTTATTCAGTGAAGGGAACTGATGCACCATCTGTAGGGATATAATACACGAACAAATCTTTTAACGCGTTTTTTTTTATGATCTGACCTATCTTTTGTTCCTATTTTCCTTCTTTTGAAGGTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTA</genome_strand>
        <mrna_strand>GAGGGTATTGGGAGGTCAGAGAGTGGGGGTTTGGGATTGGGAGCGGAAGGAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGTTGGAAGGAGGGTCAGGGACTTGGAAAGCTGGAGCAGGGAATTACGACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGTGGGGTTATAGTGGCTAGT---GC--AGCAGCAGCAGCAACAGCAACAACAACAACAACAACAACAACAGGCACCTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729475" ref_strand="+" ref_description="SGN-E729475 [LA21AG03]">
      <seq>gcggcttatacggcgatctccctccgccgtcgtcctccggcgacgatgacaagccaaccaacgccaccacagctaatgtgtggtccagcagtgctaagatggctccttcagcccttcgcaaacccttcgccccaccccaaacacttcttcgacctcagccgaagcccaaaccgcagccttcagcagctccaaaacctaatccatcgatccctcttgacgagaacactaatccaaatcccacctttgcaacgacgtcgtttcaaccagccctggtggctgttaccagcagtgtattagaagaatacgacccggctcggccgaatgattacgaagattatcggagggagaagaagaggaagcaaatggaggctgaggtgcggagagagttggaagaaagagagagaaaggagagggagcgagagagggaggaaaaggagaagagagaaaaagagagagaattgaatatttcaggtgaggaggcatggaggcggagggcggcaatgagtggaggtggtggaggaggaggcagtgctcccccacgctcgccttcgccaccatcagggaatgagtttagtattgggaggtcagagagtgggggtttgggattgggagcggaaggaaagatgacagctgcacaaaggatgatggctaagatgggttggaaggagggtcagggacttggaaagctggagcagggaattacgactccattgatggctaagaagactgataagagaggtggggttatagtggctagtgaagcaaagcagcagcagcaacagcagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="96391" stop="95003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96091" g_stop="95303" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E729475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96091" e_stop="95303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTTATACGGCGATCTCCCTCCGCCGTCGTCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTTGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAATTGAATATTTCAGGTGAGGAGGCATGGAGGCGGAGGGCGGCAATGAGTGGAGGTGGTGGAGGAGGAGGCAGTGCTCCCCCACGCTCGCCTTCGCCACCATCAGGGAATGAGTTTAGTATTGGGAGGTCAGAGAGTGGGGGTTTGGGATTGGGAGCGGAAGGAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGTTGGAAGGAGGGTCAGGGACTTGGAAAGCTGGAGCAGGGAATTACGACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGTGGGGTTATAGTGGCTAGTGAAGCAAAGCAGCAGCAGCAACAGCAGCAGC</genome_strand>
        <mrna_strand>GCGGCTTATACGGCGATCTCCCTCCGCCGTCGTCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTTGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAATTGAATATTTCAGGTGAGGAGGCATGGAGGCGGAGGGCGGCAATGAGTGGAGGTGGTGGAGGAGGAGGCAGTGCTCCCCCACGCTCGCCTTCGCCACCATCAGGGAATGAGTTTAGTATTGGGAGGTCAGAGAGTGGGGGTTTGGGATTGGGAGCGGAAGGAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGTTGGAAGGAGGGTCAGGGACTTGGAAAGCTGGAGCAGGGAATTACGACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGTGGGGTTATAGTGGCTAGTGAAGCAAAGCAGCAGCAGCAACAGCAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477810" ref_strand="+" ref_description="SGN-E477810 [cSTD-1-H14]">
      <seq>aatctccgatcagttcccgtcacaatgctcggcggcttatacggcgatctcccaccgccgtcgtcctctggcgacgatgacaagccaaccaacgccaccacagctaatgtgtggtccagtagtgctaagatggctccttcagcccttcgcaaacccttcgccccaccccaaacacttcttcgacctcagccgaagcccaaaccgcagccttcagcagctccgaaacctcatccctcgattcctcttgacgagaacactaatccaaatcccaccttcgcaacgacgtcgtttcaaccagccctggtggctgttaccagcagtgtattagaagaatacgacccggctcggccgaatgattacgaagattatcggagggagaagaagaggaagcaaatggaggctgaggtgcggagagagttggaagaaagagagagaaaggagagggaaagagagagggaggagaaggagaagagggaaaaagagagagaattgaatatttcaggtgaggaggcgtggcggcggagggcggcaatgagtggaggaggaggaggaggcagtgctcccccacggtcgccttcaccaccatcaggaaatgagtttagtattgggaggtcagagagtgggggtttgggattgggagctgaaggaaagatgacagctgcacaaggatgatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="96422" stop="95142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96122" g_stop="95442" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E477810" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96122" e_stop="95442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCCGATCGCTTTCCGTTACAATGCTCGGCGGCTTATACGGCGATCTCCCTCCGCCGTCGTCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTTGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAATTGAATATTTCAGGTGAGGAGGCATGGAGGCGGAGGGCGGCAATGAGTGGAGGTGGTGGAGGAGGAGGCAGTGCTCCCCCACGCTCGCCTTCGCCACCATCAGGGAATGAGTTTAGTATTGGGAGGTCAGAGAGTGGGGGTTTGGGATTGGGAGCGGAAGGAAAGATGACAGCTGCACAAAGGATGATGGCT</genome_strand>
        <mrna_strand>AATCTCCGATCAGTTCCCGTCACAATGCTCGGCGGCTTATACGGCGATCTCCCACCGCCGTCGTCCTCTGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGTAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCGAAACCTCATCCCTCGATTCCTCTTGACGAGAACACTAATCCAAATCCCACCTTCGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAAAGAGAGAGGGAGGAGAAGGAGAAGAGGGAAAAAGAGAGAGAATTGAATATTTCAGGTGAGGAGGCGTGGCGGCGGAGGGCGGCAATGAGTGGA---GGAGGAGGAGGAGGCAGTGCTCCCCCACGGTCGCCTTCACCACCATCAGGAAATGAGTTTAGTATTGGGAGGTCAGAGAGTGGGGGTTTGGGATTGGGAGCTGAAGGAAAGATGACAGCTGCAC-AAGGATGATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479910" ref_strand="+" ref_description="SGN-E479910 [cSTD-11-H12]">
      <seq>tgcttaaaccccatttccaccgaactcttcaattcgtcaattcagaatctccgatcagttcccgtcacaaatgctcggcggcttatacggcgatctcccaccgccgtcgtcctctggcgacgatgacaagccaaccaacgccaccacagctaatgtgtggtccagcagtgctaagatggctccttcagcccttcgcaaacccttcgccccaccccaaacacttcttcgacctcagccgaagcccaaaccgcagccttcagcagctccgaaacctcatccctcgattcctcttgacgagaacactaatccaaatcccaccttcgcaacgacgtcgtttcaaccagccctggttgctgttaccagcagtgtattagaagaatacgacccggctcggccgaatgattacgaagattatcggagggagaagaagaggaagcaaatggaggctgaggtgccgaaagagttggaagaaagagagagaaaggagaaggaaagagaaaggangagaaggagaagagggaaaagagagagaattgatatttcaggtgaagaggcgtggcggcggagggcagcaatgagtggaggaggaggaaggaggcagtgctcccccacggtcgccttcccaccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="96441" stop="95265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96122" g_stop="95533" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="630" r_length="585" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E479910" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96122" e_stop="95533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCCGATCGCTTTCCGTTACAA-TGCTCGGCGGCTTATACGGCGATCTCCCTCCGCCGTCGTCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTTGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAATTGAATATTTCAGGTGAGGAGGCATGGAGGCGGAGGGCGGCAATGAGTGGAGGTGGTGGAGGAGGAGGCAGTGCTCCCCCACGCTCGCCTTCGCCACCATC</genome_strand>
        <mrna_strand>AATCTCCGATCAGTTCCCGTCACAAATGCTCGGCGGCTTATACGGCGATCTCCCACCGCCGTCGTCCTCTGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCGAAACCTCATCCCTCGATTCCTCTTGACGAGAACACTAATCCAAATCCCACCTTCGCAACGACGTCGTTTCAACCAGCCCTGGTTGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCCGAAAGAGTTGGAAGAAAGAGAGAGAAAGGAGAAGGAAAGAGA-AAGGANGAGAAGGAGAAGAG-GGAAAAGAGAGAGAATTG-ATATTTCAGGTGAAGAGGCGTGGCGGCGGAGGGCAGCAATGAGTGGAGGAGGAGGA--AGGAGGCAGTGCTCCCCCACGGTCGCCTTC-CCACCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477880" ref_strand="+" ref_description="SGN-E477880 [cSTD-2-G13]">
      <seq>aatctccgatcagttcccgtcacaatgctcggcggcttatacggcgatctcccaccgccgtcgtcctctggcgacgatgacaagccaaccaacgccaccacagctaatgtgtggtccagtagtgctaagatggctccttcagcccttcgcaaacccttcgccccaccccaaacacttcttcgacctcagccgaagcccaaaccgcagccttcagcagctccgaaacctcatccctcgattcctcttgacgagaacactaatccaaatcccaccttcgcaacgacgtcgtttcaaccagccctggtggctgttaccagcagtgtattagaagaatacgacccggctcggccgaatgattacgaagattatcggagggagaagaagaggaagcaaatggaggctgaggtgcggagagagttggaagaaagagagagaaaggagagggaaagagagagggaggagaaggagaagagggaaaaagagagagaattgaatatttcaggtgaggaggcgtggcggcggagggcggcaatgagtggatgaggaggaggaggcagtgctcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="96422" stop="95265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96122" g_stop="95555" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E477880" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96122" e_stop="95555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCCGATCGCTTTCCGTTACAATGCTCGGCGGCTTATACGGCGATCTCCCTCCGCCGTCGTCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTTGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAATTGAATATTTCAGGTGAGGAGGCATGGAGGCGGAGGGCGGCAATGAGTGGAGGTGGTGGAGGAGGAGGCAGTGCTCCCC</genome_strand>
        <mrna_strand>AATCTCCGATCAGTTCCCGTCACAATGCTCGGCGGCTTATACGGCGATCTCCCACCGCCGTCGTCCTCTGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGTAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCGAAACCTCATCCCTCGATTCCTCTTGACGAGAACACTAATCCAAATCCCACCTTCGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAAAGAGAGAGGGAGGAGAAGGAGAAGAGGGAAAAAGAGAGAGAATTGAATATTTCAGGTGAGGAGGCGTGGCGGCGGAGGGCGGCAATGAGTGGA--T-GAGGAGGAGGAGGCAGTGCTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537510" ref_strand="+" ref_description="SGN-E537510 [TUS-56-C9]">
      <seq>tccgttacaatgctcggcggcttatacggcgatctccctccgccgtcgtcctccggcgacgatgacaagccaaccaacgccaccacagctaatgtgtggtccagcagtgctaagatggctccttcagcccttcgcaaacccttcgccccaccccaaacacttcttcgacctcagccgaagcccaaaccgcagccttcagcagctccaaaacctaatccatcgatccctcttgacgagaacactaatccaaatcccaccttcgcaacgacgtcgtttcaaccagccctggtggctgttaccagcagtgtattagaagaatacgacccggctcggccgaatgattacgaagattatcggagggagaagaagaggaagcaaatggaggctgaggtgcggagagagttggaagaaagagagagaaaggagagggagcgagagagggaggaaaaggagaagagagaaaaagagagagaattgaatatttcaggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="96407" stop="95317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96107" g_stop="95617" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E537510" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96107" e_stop="95617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTTACAATGCTCGGCGGCTTATACGGCGATCTCCCTCCGCCGTCGTCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTTGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAATTGAATATTTCAGGTGA</genome_strand>
        <mrna_strand>TCCGTTACAATGCTCGGCGGCTTATACGGCGATCTCCCTCCGCCGTCGTCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTCGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAATTGAATATTTCAGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266402" ref_strand="+" ref_description="SGN-E266402 [cLEI-3-O18]">
      <seq>ccgttacaatgctcggcggcttatacggcgatctccctccgccgtcggcctccggcgacgatgacaagccaaccaacgccaccacagctaatgtgtggtccagcagtgctaagatggctccttcagcccttcgcaaacccttcgccccaccccaaacacttcttcgacctcagccgaagcccaaaccgcagccttcagcagctccaaaacctaatccatcgatccctcttgacgagaacactaatccaaatcccaccttcgcaacgacgtcgtttcaaccagccctggtggctgttaccagcagtgtattagaagaatacgacccggctcggccgaatgattacgaagattatcggagggagaagaagaggaagcaaatggaggctgaggtgcggagagagttggaagaaagagagagaaaggagagggagcgagagagggaggaaaaggagaagagagaaaaagagagagaattgaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="96406" stop="95325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96106" g_stop="95625" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E266402" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96106" e_stop="95625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTACAATGCTCGGCGGCTTATACGGCGATCTCCCTCCGCCGTCGTCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTTGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAATTGAATATT</genome_strand>
        <mrna_strand>CCGTTACAATGCTCGGCGGCTTATACGGCGATCTCCCTCCGCCGTCGGCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTCGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAATTGAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427824" ref_strand="+" ref_description="SGN-E427824 [STM-49-M1]">
      <seq>aatctccgatcagttcccgtcacaatgctcggcggcttatacggcgatctcccaccgccgtcgtcctctggcgacgatgacaagccaaccaacgccaccacagctaatgtgtggtccagtagtgctaagatggctccttcagcccttcgcaaacccttcgccccaccccaaacacttcttcgacctcagccgaagcccaaaccgcagccttcagcagctccgaaacctcatccctcgattcctcttgacgagaacactaatccaaatcccaccttcgcaacgacgtcgtttcaaccagccctggtggctgttaccagcagtgtattagaagaatacgacccggctcggccgaatgattacgaagattatcggagggagaagaagaggaagcaaatggaggctgaagtgcggagagagttggaagaaagagagagacaggagaggggaagagagagggaggagaaggagaagagggcacaagagagagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="96422" stop="95333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96122" g_stop="95633" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E427824" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96122" e_stop="95633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCCGATCGCTTTCCGTTACAATGCTCGGCGGCTTATACGGCGATCTCCCTCCGCCGTCGTCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTTGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAAT</genome_strand>
        <mrna_strand>AATCTCCGATCAGTTCCCGTCACAATGCTCGGCGGCTTATACGGCGATCTCCCACCGCCGTCGTCCTCTGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGTAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCGAAACCTCATCCCTCGATTCCTCTTGACGAGAACACTAATCCAAATCCCACCTTCGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAAGTGCGGAGAGAGTTGGAAGAAAGAGAGAGACAGGAGAGGGGAAGAGAGAGGGAGGAGAAGGAGAAGAGGGCACAAGAGAGAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739119" ref_strand="+" ref_description="SGN-E739119 [LC16AG08]">
      <seq>cctcttgccgggacaaatgatattagtttcttctgtgtcaggtgaaactaatattattaggcccaggacaaatgatgatgcagctgctgatgaagatgatgatttggcagacactgcctcatctgatcgacctgagccaaaacaaagttctgatcatcctgcaccctctagtttgtctgaggacttgcatcgtgctacaagtaatgaaaccattaagcctcctgaatgggttgaatggcgagaaaactctaatacaattgcaacatccaatcaaacctcggattcagctggtgttgctgatgtggtcgggcctcctttacctaatggcgacgtcaaaaaggaatcagaagctccaaaggatactactcggtcataagaagaaaatgctcatattccacccactaatgtgtgcaccagtaatgtgaaagaaggatcatcaggtgatacctcacagcctccagaatcaggtggcagccaaagcgctagcaatgctagttcaagtagtgtggagaagccccctgctggaacggtgggatcatctagtggagaaaccaaaaagtgaagtgtggaaccactgtgaattctcgaggtgcagttgcgggagaaaaaacctggcacttttgctattggtctggtgcactgatgagagtctcagcgcttgctatcggctgggactaatatgtggttttggagcctgatgtatattactgggcttaaaagtcgatttagccacagatgattctttcctcaactcataggtaaagaatgctctctctttcctctcacttattaaaggcctttagtgcaggtgattcagtagatcatacttttattactaacacacaactgcctctagatgtgtccaaactgccaaagggagttgtgttgctgtacacattgaaagggatctcgttttatatcatctcatattttgtcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="98744" stop="97246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98438" g_stop="97547" g_length="892"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="936" r_length="892" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="937" polyA_stop="951"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E739119" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98438" e_stop="97547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAATATTATTAGGCCCAGCACAAATGATGATGCAGCTGCTGATGAAGATGATGATTTGGCAGACACTGCCTCATCTGATCAACCTGAGCCAAAACAAAGTTCTGATCATCCTGCACCCTCTAGTTTGTCTGAGGACTTGCATCGTGCTACAAGTAATGAAACCATTAAGCCTCCTGAATGGGTTGAATGGCGAGAAAACTCTAATACAATTGCAACATCCAATCAAACCTCGGATTCAGCTGGTGTTGCTGATGTGGTCGGGCCTCCTTTACCTAATGGCGACGTCAAAAAGGAATCAGAAGCTCCAAAGGATACTACTCGGTCAAAAGAAGAAAATGCTCATATTCCACCCACTAATGTGTGCACCAGTAATGTGAAAGAAGGATCATCAGGTGATACCTCACAGCCTCCAGAATCAGGTGGCAGCCAAAGCGCTAGCAATGCTAGTTCAAGTAGTGTGGAGAAGCCCCCTGCTGGAACGGTGGGATCATCTAGTGGAGAAACCAAAAAGTGAAGTGTGGAACCACTGTGAATTCTCGAGGTGCAGTTGCGGGAGAAAAAACCTGGCACTTTTGCTATTGGTCTGGTGCACTGATGAGAGTCTCAGCGCTTGCTATCGGCTGGGACTAATATGTGGTTTTGGAGCCTGATGTATATTACTGGGCTTAAAAGTCGATTTAGCCACAGATGATTCTTTCCTCAACTCATAGGTAAAGAATGCTCTCTCTTTCCTCTCACTTATTAAAGGCCTTTAGTGCAGGTGATTCAGTAGATCATACTTTTATTACTAACACACAACTGCCTCTAGATGTGTCCAAACTGCCAAAGGGAGTTGTGTTGCTGTACACATTGAAAGGATCTTCGTTTTATATCATCTCATATTTTGTC</genome_strand>
        <mrna_strand>AAACTAATATTATTAGGCCCAGGACAAATGATGATGCAGCTGCTGATGAAGATGATGATTTGGCAGACACTGCCTCATCTGATCGACCTGAGCCAAAACAAAGTTCTGATCATCCTGCACCCTCTAGTTTGTCTGAGGACTTGCATCGTGCTACAAGTAATGAAACCATTAAGCCTCCTGAATGGGTTGAATGGCGAGAAAACTCTAATACAATTGCAACATCCAATCAAACCTCGGATTCAGCTGGTGTTGCTGATGTGGTCGGGCCTCCTTTACCTAATGGCGACGTCAAAAAGGAATCAGAAGCTCCAAAGGATACTACTCGGTCATAAGAAGAAAATGCTCATATTCCACCCACTAATGTGTGCACCAGTAATGTGAAAGAAGGATCATCAGGTGATACCTCACAGCCTCCAGAATCAGGTGGCAGCCAAAGCGCTAGCAATGCTAGTTCAAGTAGTGTGGAGAAGCCCCCTGCTGGAACGGTGGGATCATCTAGTGGAGAAACCAAAAAGTGAAGTGTGGAACCACTGTGAATTCTCGAGGTGCAGTTGCGGGAGAAAAAACCTGGCACTTTTGCTATTGGTCTGGTGCACTGATGAGAGTCTCAGCGCTTGCTATCGGCTGGGACTAATATGTGGTTTTGGAGCCTGATGTATATTACTGGGCTTAAAAGTCGATTTAGCCACAGATGATTCTTTCCTCAACTCATAGGTAAAGAATGCTCTCTCTTTCCTCTCACTTATTAAAGGCCTTTAGTGCAGGTGATTCAGTAGATCATACTTTTATTACTAACACACAACTGCCTCTAGATGTGTCCAAACTGCCAAAGGGAGTTGTGTTGCTGTACACATTGAAAGGGATCTCGTTTTATATCATCTCATATTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739218" ref_strand="+" ref_description="SGN-E739218 [LC16CC10]">
      <seq>cctcgtgccgggacaaatgatattagtttcttctgtgtcaggtgaaactaatattattaggcccaggacaaatgatgatgcagctgctgatgaagatgatgatttggcagacactgcctcatctgatcgacctgagccaaaacaaagttctgatcatcctgcaccctctagtttgtctgaggacttgcatcgtgctacaagtaatgaaaccattaagcctcctgaatgggttgaatggcgagaaaactctaatacaattgcaacatccaatcaaacctcggattcagctggtgttgctgatgtggtcgggcctcctttacctaatggcgacgtcaaaaaggaatcagaagctccaaaggatactactcggtcataagaagaaaatgctcatattccacccactaatgtgtgcaccagtaatgtgaaagaaggatcatcaggtgatacctcacagcctccagaatcaggtggcagccaaagcgctagcaatgctagttcaagtagtgtggagaagccccctgctggaacggtgggatcatctagtggagaaaccaaaaagtgaagtgtggaaccactgtgaattctcgaggtgcagttgcgggagaaaaaacctggcacttttgctattggtctggtgcactgatgagagtctcagcgcttgctatcggctgggactaatatgtggttttggagcctgatgtatattactgggcttaaaagtcgatttagccacagatgattctttcctcaactcataggtaaagaatgctctctctttcctctcacttattaaaggcctttagtgcaggtgattcagtagatcatacttttattactaacacacaactgcctctagatgtgtccaaactgccaaagggagttgtgttgctgtacacattgaaaggatcttcgttttatatcatctcatattttgtcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="98744" stop="97246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98438" g_stop="97547" g_length="892"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="936" r_length="892" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="937" polyA_stop="950"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E739218" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98438" e_stop="97547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAATATTATTAGGCCCAGCACAAATGATGATGCAGCTGCTGATGAAGATGATGATTTGGCAGACACTGCCTCATCTGATCAACCTGAGCCAAAACAAAGTTCTGATCATCCTGCACCCTCTAGTTTGTCTGAGGACTTGCATCGTGCTACAAGTAATGAAACCATTAAGCCTCCTGAATGGGTTGAATGGCGAGAAAACTCTAATACAATTGCAACATCCAATCAAACCTCGGATTCAGCTGGTGTTGCTGATGTGGTCGGGCCTCCTTTACCTAATGGCGACGTCAAAAAGGAATCAGAAGCTCCAAAGGATACTACTCGGTCAAAAGAAGAAAATGCTCATATTCCACCCACTAATGTGTGCACCAGTAATGTGAAAGAAGGATCATCAGGTGATACCTCACAGCCTCCAGAATCAGGTGGCAGCCAAAGCGCTAGCAATGCTAGTTCAAGTAGTGTGGAGAAGCCCCCTGCTGGAACGGTGGGATCATCTAGTGGAGAAACCAAAAAGTGAAGTGTGGAACCACTGTGAATTCTCGAGGTGCAGTTGCGGGAGAAAAAACCTGGCACTTTTGCTATTGGTCTGGTGCACTGATGAGAGTCTCAGCGCTTGCTATCGGCTGGGACTAATATGTGGTTTTGGAGCCTGATGTATATTACTGGGCTTAAAAGTCGATTTAGCCACAGATGATTCTTTCCTCAACTCATAGGTAAAGAATGCTCTCTCTTTCCTCTCACTTATTAAAGGCCTTTAGTGCAGGTGATTCAGTAGATCATACTTTTATTACTAACACACAACTGCCTCTAGATGTGTCCAAACTGCCAAAGGGAGTTGTGTTGCTGTACACATTGAAAGGATCTTCGTTTTATATCATCTCATATTTTGTC</genome_strand>
        <mrna_strand>AAACTAATATTATTAGGCCCAGGACAAATGATGATGCAGCTGCTGATGAAGATGATGATTTGGCAGACACTGCCTCATCTGATCGACCTGAGCCAAAACAAAGTTCTGATCATCCTGCACCCTCTAGTTTGTCTGAGGACTTGCATCGTGCTACAAGTAATGAAACCATTAAGCCTCCTGAATGGGTTGAATGGCGAGAAAACTCTAATACAATTGCAACATCCAATCAAACCTCGGATTCAGCTGGTGTTGCTGATGTGGTCGGGCCTCCTTTACCTAATGGCGACGTCAAAAAGGAATCAGAAGCTCCAAAGGATACTACTCGGTCATAAGAAGAAAATGCTCATATTCCACCCACTAATGTGTGCACCAGTAATGTGAAAGAAGGATCATCAGGTGATACCTCACAGCCTCCAGAATCAGGTGGCAGCCAAAGCGCTAGCAATGCTAGTTCAAGTAGTGTGGAGAAGCCCCCTGCTGGAACGGTGGGATCATCTAGTGGAGAAACCAAAAAGTGAAGTGTGGAACCACTGTGAATTCTCGAGGTGCAGTTGCGGGAGAAAAAACCTGGCACTTTTGCTATTGGTCTGGTGCACTGATGAGAGTCTCAGCGCTTGCTATCGGCTGGGACTAATATGTGGTTTTGGAGCCTGATGTATATTACTGGGCTTAAAAGTCGATTTAGCCACAGATGATTCTTTCCTCAACTCATAGGTAAAGAATGCTCTCTCTTTCCTCTCACTTATTAAAGGCCTTTAGTGCAGGTGATTCAGTAGATCATACTTTTATTACTAACACACAACTGCCTCTAGATGTGTCCAAACTGCCAAAGGGAGTTGTGTTGCTGTACACATTGAAAGGATCTTCGTTTTATATCATCTCATATTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230405" ref_strand="+" ref_description="SGN-E230405 [cLEL-35-J1](-)">
      <seq>gtgggatcatctagtggagaaaccaaaaagtgaaccactgtgaattctcaaggtgcagttgcgggaaaaaaaacctggcacatttgctattggtctggtgcactgatgagagtctcagcgcttgctatcggctggaaataatatgtggttttggagcctgatgtatattactgggcttaaaagtcgatttagccacagatgattctttcctcaactcataggtaaagaatgctctctctttcctctcacttattaaaggcctttagtgcaggtgattcagtagatcatacttttattactaacacacaactgcctctagatgtgtccaaactgccaaagggagttgtgttgctgtacacattgaaaggatcttcgttttatatcatctcatattttgtcaangagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="98253" stop="97246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97953" g_stop="97547" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="416"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E230405" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97953" e_stop="97547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGATCATCTAGTGGAGAAACCAAAAAGTGAAGTGTGGAACCACTGTGAATTCTCGAGGTGCAGTTGCGGGAGAAAAAACCTGGCACTTTTGCTATTGGTCTGGTGCACTGATGAGAGTCTCAGCGCTTGCTATCGGCTGGGACTAATATGTGGTTTTGGAGCCTGATGTATATTACTGGGCTTAAAAGTCGATTTAGCCACAGATGATTCTTTCCTCAACTCATAGGTAAAGAATGCTCTCTCTTTCCTCTCACTTATTAAAGGCCTTTAGTGCAGGTGATTCAGTAGATCATACTTTTATTACTAACACACAACTGCCTCTAGATGTGTCCAAACTGCCAAAGGGAGTTGTGTTGCTGTACACATTGAAAGGATCTTCGTTTTATATCATCTCATATTTTGTC</genome_strand>
        <mrna_strand>GTGGGATCATCTAGTGGAGAAACC--AAA---AAGT---GAACCACTGTGAATTCTCAAGGTGCAGTTGCGGGAAAAAAAACCTGGCACATTTGCTATTGGTCTGGTGCACTGATGAGAGTCTCAGCGCTTGCTATCGGCTGGAAATAATATGTGGTTTTGGAGCCTGATGTATATTACTGGGCTTAAAAGTCGATTTAGCCACAGATGATTCTTTCCTCAACTCATAGGTAAAGAATGCTCTCTCTTTCCTCTCACTTATTAAAGGCCTTTAGTGCAGGTGATTCAGTAGATCATACTTTTATTACTAACACACAACTGCCTCTAGATGTGTCCAAACTGCCAAAGGGAGTTGTGTTGCTGTACACATTGAAAGGATCTTCGTTTTATATCATCTCATATTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215650" ref_strand="+" ref_description="SGN-E215650 [cLEL-15-M4](-)">
      <seq>aattctcgaggtgcagttgcgggagaaaaaacctggcacttttgctattggtctggtgcactgatgagagtctcagcgcttgctatcggctgggaataatatgtggttttggagcctgatgtatattactgggcttaaaagtcgatttagccacagatgattctttcctcaactcataggtaaagaatgctctctctttcctctcacttattaaaggcctttagtgcaggtgattcagtagatcatacttttattactaacacacaactgcctctagatgtgtccaaactgccaaagggagttgtgttgctgtacacattgaaaggatcttcgttttatatcatctcatattttgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="98203" stop="97246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97903" g_stop="97547" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="374"/>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E215650" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97903" e_stop="97547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCGAGGTGCAGTTGCGGGAGAAAAAACCTGGCACTTTTGCTATTGGTCTGGTGCACTGATGAGAGTCTCAGCGCTTGCTATCGGCTGGGACTAATATGTGGTTTTGGAGCCTGATGTATATTACTGGGCTTAAAAGTCGATTTAGCCACAGATGATTCTTTCCTCAACTCATAGGTAAAGAATGCTCTCTCTTTCCTCTCACTTATTAAAGGCCTTTAGTGCAGGTGATTCAGTAGATCATACTTTTATTACTAACACACAACTGCCTCTAGATGTGTCCAAACTGCCAAAGGGAGTTGTGTTGCTGTACACATTGAAAGGATCTTCGTTTTATATCATCTCATATTTTGTC</genome_strand>
        <mrna_strand>AATTCTCGAGGTGCAGTTGCGGGAGAAAAAACCTGGCACTTTTGCTATTGGTCTGGTGCACTGATGAGAGTCTCAGCGCTTGCTATCGGCTGGGAATAATATGTGGTTTTGGAGCCTGATGTATATTACTGGGCTTAAAAGTCGATTTAGCCACAGATGATTCTTTCCTCAACTCATAGGTAAAGAATGCTCTCTCTTTCCTCTCACTTATTAAAGGCCTTTAGTGCAGGTGATTCAGTAGATCATACTTTTATTACTAACACACAACTGCCTCTAGATGTGTCCAAACTGCCAAAGGGAGTTGTGTTGCTGTACACATTGAAAGGATCTTCGTTTTATATCATCTCATATTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425798" ref_strand="+" ref_description="SGN-E425798 [STM-45-H23]">
      <seq>cctttttttttagaaaatgataaaaatattagatataaaacaagatcctttcaacgtgtacagcatacaactccctttggcagtttggacacatctagaggcagttctgtgttactaataaaagtatgatctactgaatcacctgcacaaaaggcctttaataagtgagaataaagagagagcactctttacctataagttgaggaaagaatcatctgtggctaactcgacttttaagccccagtaatatacatcaggctccaaaaccacatattagtcccagccgacagcaagagctgagactctcatcagtgcaccaggtcaatggcaaaagtgctaggttttttctcccgcaactgcacctcgagaattcacagtggttccacacttcacttctcggtttctccactagataatcccactgttccagcagggggcttctccatactaccagaactaggattgctagaactttggctcccacctgtttctggaggctgtgaggtatcacctgatgatccttcagactctttttccacattactggtgcacccattagtgggtggaatatgagcattttcttcttttgactgaatagtatcctttggagcttctgattcctttttgatgtcgccattaggtaaaggaggcccgaccacatcagcaacaccagctgaaatccgaggttttgattggatgttccaattgtactagagctttctcgccattcaacccattcaggaggcttaatggtttcattacttgtagcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="97248" stop="98593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97560" g_stop="98293" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="773" r_length="743" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E425798" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97560" e_stop="98293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATAAAACGAAGATCCTTTCAATGTGTACAGCAACACAACTCCCTTTGGCAGTTTGGACACATCTAGAGGCAGTTGTGTGTTAGTAATAAAAGTATGATCTACTGAATCACCTGCACTAAAGGCCTTTAATAAGTGAGAGGAAAGAGAGAGCATTCTTTACCTATGAGTTGAGGAAAGAATCATCTGTGGCTAAATCGACTTTTAAG-CCCAGTAATATACATCAGGCTCCAAAACCACATATTAGTCCCAGCCGATAGCAAGCGCTGAGACTCTCATCAGTGCACCAGACCAATAGCAAAAGTGCCAGGTTTTTTCTCCCGCAACTGCACCTCGAGAATTCACAGTGGTTCCACACTTCACTTTTTGGTTTCTCCACTAGATGATCCCACCGTTCCAGCAGGGGGCTTCTCCACACTACTTGAACTAGCATTGCTAGCGCTTTGGCTGCCACCTGATTCTGGAGGCTGTGAGGTATCACCTGATGATCC-T-----TC--TTT-CACATTACTGGTGCACACATTAGTGGGTGGAATATGAGCATTTTCTTCTTTTGACCGAGTAGTATCCTTTGGAGCTTCTGATTCCTTTTTGACGTCGCCATTAGGTAAAGGAGGCCCGACCACATCAGCAACACCAGCTG-AATCCGAGG-TTTGATTGGATGTTGCAATTGTATTAGAGTTTTCTCGCCATTCAACCCATTCAGGAGGCTTAATGGTTTCATTACTTGTAGCACGA</genome_strand>
        <mrna_strand>A-GATATAAAAC-AAGATCCTTTCAACGTGTACAGC-ATACAACTCCCTTTGGCAGTTTGGACACATCTAGAGGCAGTTCTGTGTTACTAATAAAAGTATGATCTACTGAATCACCTGCACAAAAGGCCTTTAATAAGTGAGAATAAAGAGAGAGCACTCTTTACCTATAAGTTGAGGAAAGAATCATCTGTGGCTAACTCGACTTTTAAGCCCCAGTAATATACATCAGGCTCCAAAACCACATATTAGTCCCAGCCGACAGCAAGAGCTGAGACTCTCATCAGTGCACCAGGTCAATGGCAAAAGTGCTAGGTTTTTTCTCCCGCAACTGCACCTCGAGAATTCACAGTGGTTCCACACTTCACTTCTCGGTTTCTCCACTAGATAATCCCACTGTTCCAGCAGGGGGCTTCTCCATACTACCAGAACTAGGATTGCTAGAACTTTGGCTCCCACCTGTTTCTGGAGGCTGTGAGGTATCACCTGATGATCCTTCAGACTCTTTTTCCACATTACTGGTGCACCCATTAGTGGGTGGAATATGAGCATTTTCTTCTTTTGACTGAATAGTATCCTTTGGAGCTTCTGATTCCTTTTTGATGTCGCCATTAGGTAAAGGAGGCCCGACCACATCAGCAACACCAGCTGAAATCCGAGGTTTTGATTGGATGTTCCAATTGTACTAGAGCTTTCTCGCCATTCAACCCATTCAGGAGGCTTAATGGTTTCATTACTTGTAGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451873" ref_strand="+" ref_description="SGN-E451873 [cSTS-14-D21]">
      <seq>atcaagatagagactatgatgttgcagctctggcaaataatttaagtcaggccttccgctatggaatctataacaatgatgaacttgatgaggctcgtggttcacttgagcgggatgatgaggatgtctattttgatgatgagtctgctgaagttgtgatatcttcactacgtttgggggacgatcaggaaagtggatcactttttacaaattccaactggtttgctttcgaggatgacaaagagattcgtgaacagtacactgccttggttgcttctccctcacctgacactgaagaaactaatgttattaggcccagcacaaatgatgatgcagctgctgatgaagatgatgatttggcagacactgcctcatctgatcgacctgagccaaaacaaagttctgatcatcctgcaccctctagtttgtctgaggacttgcatcatgctacaagtaatgaaaccattaagcctcctgaatgggttgaatggcgagaaagctctagtacaattggaacatccaatcaaacctcggattcagctggtgttgctgatgtggtcgggcctcctttacctaatggcgacgtcaaaaaggaatcagaagctccaaaggatactattcagtcaaaagaagaaaatgctcatattccacccactaatgggtgcatcagtaatgtggaaaaagagtctgaaggatcatcangtgacacctcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="101747" stop="97732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101447" g_stop="101356" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101355" i_stop="100441" i_length="915">
            <donor d_prob="0.877" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100440" g_stop="100411" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="122" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100410" i_stop="98699" i_length="1712">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98698" g_stop="98628" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="193" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98627" i_stop="98543" i_length="85">
            <donor d_prob="0.762" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98542" g_stop="98051" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="685" r_length="492" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E451873" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101447" e_stop="101356"/>
          <exon e_start="100440" e_stop="100411"/>
          <exon e_start="98698" e_stop="98628"/>
          <exon e_start="98542" e_stop="98051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAGGTGTTCTTCATATCCCTTAACAAAAGACAACATGATTGTGCATTTCTTGATCTCTCTCTATCTTTTAGCATTTAATAGTGCTGGCTAGGTTCCTGTGTTTATATCTGGAGAAGGTAATGACAGAAGGTTTGGAACATTGATAGGTAGTTGGAGAATTTATCTTTCTTATATTTAGAGTAGTTCTTTCTTAGAGCTGCATGCTATGTATAATCTTTAGAGATGAAGTAAAATGAGCACAGTAAATGTGCTTTTTGATTCATATTAAGTGCCCACACCTTTTTGCATATCTAATTATTTATAATTGAATTTGAAGTGTGGTTTTGATTTTTATCTGCAAGTCCCAATCACAGGAATGTTGTTCAGAATCGGTGGTTGAATTTTTGACTGTAAAAAGCCTCTGCTGAAAATGGTATAAGATCCATAATTCAATATAGATGTAGCAGGGTTAGACAGAGGGTCCGGGAATCTGTGCCAGCCTCTTGTAACTGTTATATGGTCATGGTATAACAGCCTAGATGTAGTAGGTTAAGACAGAAACCAGTGAGAGCTAGAATGAATTTTATTCTGTTAATAGCATCTTCCTAATTCTGTCATAATTAGGAATGTTGGTATTTAGTGATCTTCCTTATTAAATGACTTTCATTTTAAGTTTAAAGAAACCTTATCTCAAGTAGCCTAAACTATGGAGCACTCTGTAGATTGTCTGCAAGCAATTCAATACAAGTTATATCTTAAAGTGCCAAAACAATGGATGCTTGATTTTGCTTTTTTTTTTTCCTTTCCTGGTTTTTCTTGTTTTGAACCTTTTTTTGTTCAACTTCATCTTTAATCTTCACATATCAATTTTTTAAGCACATGGTCATTAAGTGTATAATCATTAAAAATGTACTAAAGGAAGACTTTATCTGCGTGCAGGCTCGTGGTTCACTTGAGCGGGATGATGAGGTAACTGTTGAGGTTTTATTTAGTCCTTCAGTGATTACTTAGTTAATGAGATATACGAACTGTCTGCTACCGTACTTCTATATGCTGTTTCTGCATATGCTCTAGTGAGAGGGTACAGGGCGTACTTTCTCTCCCTCACCTCCACTTTTCATTCACAGCCATGAAGTGCGTCTTCATATAGCGGGAAGATATTTAGAGGAGGTGCAACTAATTTGTTACTAAGGCATAGTCAATTGTATTGATTGATTGATATCATTCTTCATAATGATGATCATTAGAGAAAGTTGAGTCGATTTGTAAGGCAGACCACCTCTGTTCCACCTTCAATACTGATCATCCCTTTAATTCAATGTGGCTGACAGGAACTTCTTTTTGGTCATTAGCAATACTTCCAACAACTCCCTCCGTCCGGATCTTGTCACATTTCCTTTTTCGAGGGTCAAACTTCATAAACCTTATCCAACATTCTAAGATGTATTTTCCACCGTATTGATATTAGAAAAAATGCAACTTATAGTACTTTTCATATAGTTTATGAATCGATAAGTTTTACTCTTAAAATATTAAATTAATCTAATTCAATTTAGCTCCGAAGATTAGTCACTCTAGAAAACGATACTTGACAAGTACTTTGGGACAGAGGGAGTAGTTCTGAAGTCACCTATTAGCTTATCAAAATACCCACATTGCCCTTAGCTTTTGATTGCTTTAAAGCCAGTTAGTTATCTGTGCATATTTAGTTTATTATTTTATTAATTAAATAAACATGTCATTTGTGATGGAAGAATGAAGCGATATAATATTGCATGTAGGAATATCTAACGGAATTTTCTTGCTAGCTGTATGTCCACCTTGTCATATCTTATAATATATATATCTCAAAGAAGTAGGCTCTACAAATGACTTTAAAGTTTAAAGGGTAATCTCATACAAACTGTTATACCCTTTAACCTTGAGTTTGGAGCATTTATAGATATCTTGTTAAAATTCTCATAGAGGGTATGTATAACAGTTCTGAGATAATGGTCGATTTTATAACTCACTTGTGTGCTTTCTCCTTAAGAAATTTCAAAAGCATTTTTCCAACTTAATTTTTTCTTTTGGAAATCCTCCTATTTAGTATTAATTATGTTGTCATGACCAATGTCACTAAGGCTCACATGGAAAAACCCTCTTAAGCCTAAAGCTTGGTGAAGCGCAGGTTGGGTGTTTTGGCTAAGCTTAGATGACCTTTTAGTGCAGTCACCAAGGTTCTAGGACCTATGCTTTATCACCATGGCTCTGGCTTTAGGAGGACCATACTAGAAAGTAAATATAGTTCGTGAAGTAGTAGATTGATTGCTAATAGAACATTATGAATGGAGTTCGAGTGATTACAACTAGAAATTAGTAAAATTTGGTATAAATACCTAGTCACTAAAACTTGGCACTGCATCCCTACATCTAAATCAGAACTTCAAATTTATGTTTGAACTCAGTGACATGATTTTTGCTTCATATATTTAATTTTAATCTTTCAATTCCTTAATCCAGATAATTGGTGTGTTTACATTTATTTTTTCTTCATTAGTGCTCTCTTCTCTGGACCTATTTGTGCTTTGCGCTCAAGTCTTAGTAGTCATGACGTTGCTTTACGCTTTTTGCCTGTGGCGATGCACAACTTGTGCCTCTTCAGGCAACTCATTTACACTAACTCTTCTGATTTTCTGTAGGATGTCTATTTTGATGATGAGTCTGCTGAAGTTGTGATATCTTCACTACGTCTGGGGGACGATCAGGAAAGGTGGGTAAAAGACAGTGTTCAAAATGCTTTGTGTCTGTCGCAGTATTATTAGTAACAATGATGTTACCTATAATTGTTTTTTCAGTGGATCACTTTTTACAAATTCCAACTGGTTTGCTTTTGAGGATGACAAAGAGATTCGTGAACAGTACACTGCTTTGGTTGCTTCTCCTTCACCTGACACAGAAGAAACTAATATTATTAGGCCCAGCACAAATGATGATGCAGCTGCTGATGAAGATGATGATTTGGCAGACACTGCCTCATCTGATCAACCTGAGCCAAAACAAAGTTCTGATCATCCTGCACCCTCTAGTTTGTCTGAGGACTTGCATCGTGCTACAAGTAATGAAACCATTAAGCCTCCTGAATGGGTTGAATGGCGAGAAAACTCTAATACAATTGCAACATCCAATCAAACCTCGGATTCAGCTGGTGTTGCTGATGTGGTCGGGCCTCCTTTACCTAATGGCGACGTCAAAAAGGAATCAGAAGCTCCAAAGGATACTACTCGGTCAAAAGAAGAAAATGCTCATATTCCACCCACTAATGTGTGCACCAGTAATGTGAAAGAAGG</genome_strand>
        <mrna_strand>ATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAATTTAAGTCAGGCCTTCCGCTATGGAATCTATAACAATGATGAACTTGATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTGGTTCACTTGAGCGGGATGATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCTATTTTGATGATGAGTCTGCTGAAGTTGTGATATCTTCACTACGTTTGGGGGACGATCAGGAAAG.....................................................................................TGGATCACTTTTTACAAATTCCAACTGGTTTGCTTTCGAGGATGACAAAGAGATTCGTGAACAGTACACTGCCTTGGTTGCTTCTCCCTCACCTGACACTGAAGAAACTAATGTTATTAGGCCCAGCACAAATGATGATGCAGCTGCTGATGAAGATGATGATTTGGCAGACACTGCCTCATCTGATCGACCTGAGCCAAAACAAAGTTCTGATCATCCTGCACCCTCTAGTTTGTCTGAGGACTTGCATCATGCTACAAGTAATGAAACCATTAAGCCTCCTGAATGGGTTGAATGGCGAGAAAGCTCTAGTACAATTGGAACATCCAATCAAACCTCGGATTCAGCTGGTGTTGCTGATGTGGTCGGGCCTCCTTTACCTAATGGCGACGTCAAAAAGGAATCAGAAGCTCCAAAGGATACTATTCAGTCAAAAGAAGAAAATGCTCATATTCCACCCACTAATGGGTGCATCAGTAATGTGGAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454989" ref_strand="+" ref_description="SGN-E454989 [cSTS-25-A17]">
      <seq>atcaagatagagactatgatgttgcagctctggcaaataatttaagtcaggccttccgctatggaatctataacaatgatgaacttgatgaggctcgtggttcacttgagcgggatgatgaggatgtctattttgatgatgagtctgctgaagttgtgatatcttcactacgtttgggggacgatcaggaaagtggatcactttttacaaattccaactggtttgctttcgaggatgacaaagagattcgtgaacagtacactgccttggttgcttctccctcacctgacactgaagaaactaatgttattaggcccagcacaaatgatgatgcagctgctgatgaagatgatgatttggcagacactgcctcatctgatcgacctgagccaaaacaaagttctgatcatcctgcaccctctagtttgtctgaggacttgcatcatgctacaagtaatgaaaccattaagcctcctgaatgggttgaatggcgagaaagctctagtacaattggaacatccaatcaaacctcggattcagctggtgttgctgatgtggtcgggcctcctttacctaatggcgacgtcaaaaaggaatcagaagctccaaaggatactattcagtcaaaagaagaaaatgctcatattccacccactaatgggtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="101747" stop="97770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101447" g_stop="101356" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101355" i_stop="100441" i_length="915">
            <donor d_prob="0.877" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100440" g_stop="100411" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="122" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100410" i_stop="98699" i_length="1712">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98698" g_stop="98628" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="193" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98627" i_stop="98543" i_length="85">
            <donor d_prob="0.762" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98542" g_stop="98069" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="667" r_length="474" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E454989" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101447" e_stop="101356"/>
          <exon e_start="100440" e_stop="100411"/>
          <exon e_start="98698" e_stop="98628"/>
          <exon e_start="98542" e_stop="98069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAGGTGTTCTTCATATCCCTTAACAAAAGACAACATGATTGTGCATTTCTTGATCTCTCTCTATCTTTTAGCATTTAATAGTGCTGGCTAGGTTCCTGTGTTTATATCTGGAGAAGGTAATGACAGAAGGTTTGGAACATTGATAGGTAGTTGGAGAATTTATCTTTCTTATATTTAGAGTAGTTCTTTCTTAGAGCTGCATGCTATGTATAATCTTTAGAGATGAAGTAAAATGAGCACAGTAAATGTGCTTTTTGATTCATATTAAGTGCCCACACCTTTTTGCATATCTAATTATTTATAATTGAATTTGAAGTGTGGTTTTGATTTTTATCTGCAAGTCCCAATCACAGGAATGTTGTTCAGAATCGGTGGTTGAATTTTTGACTGTAAAAAGCCTCTGCTGAAAATGGTATAAGATCCATAATTCAATATAGATGTAGCAGGGTTAGACAGAGGGTCCGGGAATCTGTGCCAGCCTCTTGTAACTGTTATATGGTCATGGTATAACAGCCTAGATGTAGTAGGTTAAGACAGAAACCAGTGAGAGCTAGAATGAATTTTATTCTGTTAATAGCATCTTCCTAATTCTGTCATAATTAGGAATGTTGGTATTTAGTGATCTTCCTTATTAAATGACTTTCATTTTAAGTTTAAAGAAACCTTATCTCAAGTAGCCTAAACTATGGAGCACTCTGTAGATTGTCTGCAAGCAATTCAATACAAGTTATATCTTAAAGTGCCAAAACAATGGATGCTTGATTTTGCTTTTTTTTTTTCCTTTCCTGGTTTTTCTTGTTTTGAACCTTTTTTTGTTCAACTTCATCTTTAATCTTCACATATCAATTTTTTAAGCACATGGTCATTAAGTGTATAATCATTAAAAATGTACTAAAGGAAGACTTTATCTGCGTGCAGGCTCGTGGTTCACTTGAGCGGGATGATGAGGTAACTGTTGAGGTTTTATTTAGTCCTTCAGTGATTACTTAGTTAATGAGATATACGAACTGTCTGCTACCGTACTTCTATATGCTGTTTCTGCATATGCTCTAGTGAGAGGGTACAGGGCGTACTTTCTCTCCCTCACCTCCACTTTTCATTCACAGCCATGAAGTGCGTCTTCATATAGCGGGAAGATATTTAGAGGAGGTGCAACTAATTTGTTACTAAGGCATAGTCAATTGTATTGATTGATTGATATCATTCTTCATAATGATGATCATTAGAGAAAGTTGAGTCGATTTGTAAGGCAGACCACCTCTGTTCCACCTTCAATACTGATCATCCCTTTAATTCAATGTGGCTGACAGGAACTTCTTTTTGGTCATTAGCAATACTTCCAACAACTCCCTCCGTCCGGATCTTGTCACATTTCCTTTTTCGAGGGTCAAACTTCATAAACCTTATCCAACATTCTAAGATGTATTTTCCACCGTATTGATATTAGAAAAAATGCAACTTATAGTACTTTTCATATAGTTTATGAATCGATAAGTTTTACTCTTAAAATATTAAATTAATCTAATTCAATTTAGCTCCGAAGATTAGTCACTCTAGAAAACGATACTTGACAAGTACTTTGGGACAGAGGGAGTAGTTCTGAAGTCACCTATTAGCTTATCAAAATACCCACATTGCCCTTAGCTTTTGATTGCTTTAAAGCCAGTTAGTTATCTGTGCATATTTAGTTTATTATTTTATTAATTAAATAAACATGTCATTTGTGATGGAAGAATGAAGCGATATAATATTGCATGTAGGAATATCTAACGGAATTTTCTTGCTAGCTGTATGTCCACCTTGTCATATCTTATAATATATATATCTCAAAGAAGTAGGCTCTACAAATGACTTTAAAGTTTAAAGGGTAATCTCATACAAACTGTTATACCCTTTAACCTTGAGTTTGGAGCATTTATAGATATCTTGTTAAAATTCTCATAGAGGGTATGTATAACAGTTCTGAGATAATGGTCGATTTTATAACTCACTTGTGTGCTTTCTCCTTAAGAAATTTCAAAAGCATTTTTCCAACTTAATTTTTTCTTTTGGAAATCCTCCTATTTAGTATTAATTATGTTGTCATGACCAATGTCACTAAGGCTCACATGGAAAAACCCTCTTAAGCCTAAAGCTTGGTGAAGCGCAGGTTGGGTGTTTTGGCTAAGCTTAGATGACCTTTTAGTGCAGTCACCAAGGTTCTAGGACCTATGCTTTATCACCATGGCTCTGGCTTTAGGAGGACCATACTAGAAAGTAAATATAGTTCGTGAAGTAGTAGATTGATTGCTAATAGAACATTATGAATGGAGTTCGAGTGATTACAACTAGAAATTAGTAAAATTTGGTATAAATACCTAGTCACTAAAACTTGGCACTGCATCCCTACATCTAAATCAGAACTTCAAATTTATGTTTGAACTCAGTGACATGATTTTTGCTTCATATATTTAATTTTAATCTTTCAATTCCTTAATCCAGATAATTGGTGTGTTTACATTTATTTTTTCTTCATTAGTGCTCTCTTCTCTGGACCTATTTGTGCTTTGCGCTCAAGTCTTAGTAGTCATGACGTTGCTTTACGCTTTTTGCCTGTGGCGATGCACAACTTGTGCCTCTTCAGGCAACTCATTTACACTAACTCTTCTGATTTTCTGTAGGATGTCTATTTTGATGATGAGTCTGCTGAAGTTGTGATATCTTCACTACGTCTGGGGGACGATCAGGAAAGGTGGGTAAAAGACAGTGTTCAAAATGCTTTGTGTCTGTCGCAGTATTATTAGTAACAATGATGTTACCTATAATTGTTTTTTCAGTGGATCACTTTTTACAAATTCCAACTGGTTTGCTTTTGAGGATGACAAAGAGATTCGTGAACAGTACACTGCTTTGGTTGCTTCTCCTTCACCTGACACAGAAGAAACTAATATTATTAGGCCCAGCACAAATGATGATGCAGCTGCTGATGAAGATGATGATTTGGCAGACACTGCCTCATCTGATCAACCTGAGCCAAAACAAAGTTCTGATCATCCTGCACCCTCTAGTTTGTCTGAGGACTTGCATCGTGCTACAAGTAATGAAACCATTAAGCCTCCTGAATGGGTTGAATGGCGAGAAAACTCTAATACAATTGCAACATCCAATCAAACCTCGGATTCAGCTGGTGTTGCTGATGTGGTCGGGCCTCCTTTACCTAATGGCGACGTCAAAAAGGAATCAGAAGCTCCAAAGGATACTACTCGGTCAAAAGAAGAAAATGCTCATATTCCACCCACTAATGTGTGCAC</genome_strand>
        <mrna_strand>ATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAATTTAAGTCAGGCCTTCCGCTATGGAATCTATAACAATGATGAACTTGATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTGGTTCACTTGAGCGGGATGATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCTATTTTGATGATGAGTCTGCTGAAGTTGTGATATCTTCACTACGTTTGGGGGACGATCAGGAAAG.....................................................................................TGGATCACTTTTTACAAATTCCAACTGGTTTGCTTTCGAGGATGACAAAGAGATTCGTGAACAGTACACTGCCTTGGTTGCTTCTCCCTCACCTGACACTGAAGAAACTAATGTTATTAGGCCCAGCACAAATGATGATGCAGCTGCTGATGAAGATGATGATTTGGCAGACACTGCCTCATCTGATCGACCTGAGCCAAAACAAAGTTCTGATCATCCTGCACCCTCTAGTTTGTCTGAGGACTTGCATCATGCTACAAGTAATGAAACCATTAAGCCTCCTGAATGGGTTGAATGGCGAGAAAGCTCTAGTACAATTGGAACATCCAATCAAACCTCGGATTCAGCTGGTGTTGCTGATGTGGTCGGGCCTCCTTTACCTAATGGCGACGTCAAAAAGGAATCAGAAGCTCCAAAGGATACTATTCAGTCAAAAGAAGAAAATGCTCATATTCCACCCACTAATGGGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728361" ref_strand="+" ref_description="SGN-E728361 [LA17CD01]">
      <seq>caataataccttctttcaggaggcctcaggcagtggacatttttcttgttaattactctctccatctcaatttatgtggcggtgtttgagaccacaagtttcaaaagcctttctttctttcttgcctcacataaattgggagaagtatataaagatgtcattctttttggaactgactaaaaaggaatgagtgtcacatagtttaggaaaaagggagtaccatgtttcatgatatataacaaattgtgggccttgaatgtctcatttattctgtaaaaagcattttgagtttcctagccgaattcctctaatgatatttaccttaccttacaagaaattcttgccgcgattgaaggagagaatcatgcccagatttgactgttcctcacttttgatcgtttgtgtaaattttataaaagtacgccattttttcatttgagttggacacaacattttgaagaaaatataatcattacatcctttctaataccaatgggatattttcatcttttcattggattgatcatgattgtagtttgttagtctttataccagcataatattgacttttatttcatgtaacctctctcaggagacccacatcactgcatgaccgaatgagggacagtgatgatgatgattatcaagatagagactatgatgttgcagctctggcaaataacttaagccaggccttccgctatggaatctataacaacgatgaacttgatgaggctcgtggttcacttgagcgggatgatgaggatgtctatcntgatgatgagtctgctgaagttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="102681" stop="98363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102382" g_stop="102300" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102299" i_stop="102019" i_length="281">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102018" g_stop="101356" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="734" r_length="651" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101355" i_stop="100441" i_length="915">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100440" g_stop="100411" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="764" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100410" i_stop="98699" i_length="1712">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98698" g_stop="98663" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="800" r_length="36" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E728361" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102382" e_stop="102300"/>
          <exon e_start="102018" e_stop="101356"/>
          <exon e_start="100440" e_stop="100411"/>
          <exon e_start="98698" e_stop="98663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGTGTTTGATTGGGCACAAAGTTTAAGAAAGAATGAATTTTGAAACTTGTGGTCTTGAACAAGCCGTAGATATTTGTATCATTAAAAATCTTCTCATTAAGGGTAGAATGGGAAGTATAAAATTCATTTGTTACTCCCTCTGTCCCGATTTATGTGGCAAACTTTCCTTTTTAGCCTGTCCCAAAAGGAATGATACATATCTATATTTAGTACAATTAAACTTTTTAAAATGTCTATGTTACCCTTAGTGAGATGATTTATAGCCACACCAACATCTATGGCTTGTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATTGGGATGCAGAAAGTACGAAATATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGTATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAGGTGTTCTTCATATCCCTTAACAAAAGACAACATGATTGTGCATTTCTTGATCTCTCTCTATCTTTTAGCATTTAATAGTGCTGGCTAGGTTCCTGTGTTTATATCTGGAGAAGGTAATGACAGAAGGTTTGGAACATTGATAGGTAGTTGGAGAATTTATCTTTCTTATATTTAGAGTAGTTCTTTCTTAGAGCTGCATGCTATGTATAATCTTTAGAGATGAAGTAAAATGAGCACAGTAAATGTGCTTTTTGATTCATATTAAGTGCCCACACCTTTTTGCATATCTAATTATTTATAATTGAATTTGAAGTGTGGTTTTGATTTTTATCTGCAAGTCCCAATCACAGGAATGTTGTTCAGAATCGGTGGTTGAATTTTTGACTGTAAAAAGCCTCTGCTGAAAATGGTATAAGATCCATAATTCAATATAGATGTAGCAGGGTTAGACAGAGGGTCCGGGAATCTGTGCCAGCCTCTTGTAACTGTTATATGGTCATGGTATAACAGCCTAGATGTAGTAGGTTAAGACAGAAACCAGTGAGAGCTAGAATGAATTTTATTCTGTTAATAGCATCTTCCTAATTCTGTCATAATTAGGAATGTTGGTATTTAGTGATCTTCCTTATTAAATGACTTTCATTTTAAGTTTAAAGAAACCTTATCTCAAGTAGCCTAAACTATGGAGCACTCTGTAGATTGTCTGCAAGCAATTCAATACAAGTTATATCTTAAAGTGCCAAAACAATGGATGCTTGATTTTGCTTTTTTTTTTTCCTTTCCTGGTTTTTCTTGTTTTGAACCTTTTTTTGTTCAACTTCATCTTTAATCTTCACATATCAATTTTTTAAGCACATGGTCATTAAGTGTATAATCATTAAAAATGTACTAAAGGAAGACTTTATCTGCGTGCAGGCTCGTGGTTCACTTGAGCGGGATGATGAGGTAACTGTTGAGGTTTTATTTAGTCCTTCAGTGATTACTTAGTTAATGAGATATACGAACTGTCTGCTACCGTACTTCTATATGCTGTTTCTGCATATGCTCTAGTGAGAGGGTACAGGGCGTACTTTCTCTCCCTCACCTCCACTTTTCATTCACAGCCATGAAGTGCGTCTTCATATAGCGGGAAGATATTTAGAGGAGGTGCAACTAATTTGTTACTAAGGCATAGTCAATTGTATTGATTGATTGATATCATTCTTCATAATGATGATCATTAGAGAAAGTTGAGTCGATTTGTAAGGCAGACCACCTCTGTTCCACCTTCAATACTGATCATCCCTTTAATTCAATGTGGCTGACAGGAACTTCTTTTTGGTCATTAGCAATACTTCCAACAACTCCCTCCGTCCGGATCTTGTCACATTTCCTTTTTCGAGGGTCAAACTTCATAAACCTTATCCAACATTCTAAGATGTATTTTCCACCGTATTGATATTAGAAAAAATGCAACTTATAGTACTTTTCATATAGTTTATGAATCGATAAGTTTTACTCTTAAAATATTAAATTAATCTAATTCAATTTAGCTCCGAAGATTAGTCACTCTAGAAAACGATACTTGACAAGTACTTTGGGACAGAGGGAGTAGTTCTGAAGTCACCTATTAGCTTATCAAAATACCCACATTGCCCTTAGCTTTTGATTGCTTTAAAGCCAGTTAGTTATCTGTGCATATTTAGTTTATTATTTTATTAATTAAATAAACATGTCATTTGTGATGGAAGAATGAAGCGATATAATATTGCATGTAGGAATATCTAACGGAATTTTCTTGCTAGCTGTATGTCCACCTTGTCATATCTTATAATATATATATCTCAAAGAAGTAGGCTCTACAAATGACTTTAAAGTTTAAAGGGTAATCTCATACAAACTGTTATACCCTTTAACCTTGAGTTTGGAGCATTTATAGATATCTTGTTAAAATTCTCATAGAGGGTATGTATAACAGTTCTGAGATAATGGTCGATTTTATAACTCACTTGTGTGCTTTCTCCTTAAGAAATTTCAAAAGCATTTTTCCAACTTAATTTTTTCTTTTGGAAATCCTCCTATTTAGTATTAATTATGTTGTCATGACCAATGTCACTAAGGCTCACATGGAAAAACCCTCTTAAGCCTAAAGCTTGGTGAAGCGCAGGTTGGGTGTTTTGGCTAAGCTTAGATGACCTTTTAGTGCAGTCACCAAGGTTCTAGGACCTATGCTTTATCACCATGGCTCTGGCTTTAGGAGGACCATACTAGAAAGTAAATATAGTTCGTGAAGTAGTAGATTGATTGCTAATAGAACATTATGAATGGAGTTCGAGTGATTACAACTAGAAATTAGTAAAATTTGGTATAAATACCTAGTCACTAAAACTTGGCACTGCATCCCTACATCTAAATCAGAACTTCAAATTTATGTTTGAACTCAGTGACATGATTTTTGCTTCATATATTTAATTTTAATCTTTCAATTCCTTAATCCAGATAATTGGTGTGTTTACATTTATTTTTTCTTCATTAGTGCTCTCTTCTCTGGACCTATTTGTGCTTTGCGCTCAAGTCTTAGTAGTCATGACGTTGCTTTACGCTTTTTGCCTGTGGCGATGCACAACTTGTGCCTCTTCAGGCAACTCATTTACACTAACTCTTCTGATTTTCTGTAGGATGTCTATTTTGATGATGAGTCTGCTGAAGTTGTG</genome_strand>
        <mrna_strand>CAATAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGT.........................................................................................................................................................................................................................................................................................GTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATT-GG--G-AG-AAGT-------ATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGGATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTGGTTCACTTGAGCGGGATGATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCTATCNTGATGATGAGTCTGCTGAAGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455393" ref_strand="+" ref_description="SGN-E455393 [cSTS-26-M5]">
      <seq>atgggagcttacatccaccgcttgggaagcatcgtctgaagataatagagtttgtttcagtcttggtgagtgttagcagtgaagctgctgaaaaggagttgattcggcttggtgctgttaaacacatcttagaattgttttttgagtatccatacaacaactttttgcatcatcatgttgagactataataatttcgtgcctggagagtaagaatattcaatttgttgaacatcttcttagtgactgtaatcttctcgtgaaaattctggaggcggagaaaaactcaacgcttgctgctgatccatccaagccaacagcctctgttgagggaagatccccacccaggattggaaacattgggcacgtgacgcgaatagctaacaaacttgttcaactagggaacaacaataatggcatacagtcgcgtctgcagtgaatggattgattggcagacaaatattcttcaaaaacggaatgctgtggaaaatgttttccagtgggcttgtgggagacccacatcactgcatgaccgaatgagggacagtgatgatgatgattatcaagatagagactatgatgttgcagctctggcaaataatttaagtcaggccttccgctatggaatctantacaatgatgaacttgatgaggctcgtggttcacttgagcaggatgatgangatgtctattttgatgatgagtctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="108973" stop="98370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108673" g_stop="108633" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108632" i_stop="106397" i_length="2236">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106396" g_stop="106293" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="145" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106292" i_stop="106180" i_length="113">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106179" g_stop="106014" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="311" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106013" i_stop="105905" i_length="109">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105904" g_stop="105782" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="434" r_length="123" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105781" i_stop="103368" i_length="2414">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103367" g_stop="103293" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="509" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="103292" i_stop="101498" i_length="1795">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101497" g_stop="101356" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="651" r_length="142" r_score="0.965"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101355" i_stop="100441" i_length="915">
            <donor d_prob="0.877" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100440" g_stop="100411" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="681" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100410" i_stop="98699" i_length="1712">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98698" g_stop="98670" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="710" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E455393" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108673" e_stop="108633"/>
          <exon e_start="106396" e_stop="106293"/>
          <exon e_start="106179" e_stop="106014"/>
          <exon e_start="105904" e_stop="105782"/>
          <exon e_start="103367" e_stop="103293"/>
          <exon e_start="101497" e_stop="101356"/>
          <exon e_start="100440" e_stop="100411"/>
          <exon e_start="98698" e_stop="98670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAGCTTACATCCACCTCTTGGGAAGCATCGTCTGAAGGTAGTTATCAAACATCTTCTTGTATGCAGAGATCGTAAATGCAAAGGTTGTTTATGCGGAGATTAATAATGAGGAGATCTTTATACATGAATTACTTGAACAGAATATTGTCTTTGAATAGTTTATTCCCCGTATTGCTAATACACGTATTTTCGATTCTCATTCTATCTTTAGATTCCACATGACTTTAATGTTTGTGTTAGTTAGTACTTCCAACCAAACGTTGCAGTTATGTTGTGATTATTTCTTTCTTATGAGGCTAACCAAATACTATACCATCTTTTCACCTTGAATTGGTCAAAATATGCAGACTTTCTTACTTTTCGTGGAGGATTAGAGGCGGAGTTTTATGGTTTGAGTAATTATTTCAAATCATCAAGTAAATGCTCTTCAAGCTTCTGTCTTGGAATTAGAAATGGATATAATTTAGTATCACTTTTGATCTAACTTAGAGAGGTCAGCATTGTCAAAGACGAAAAGTGCTTAACAACGTCAGGGTCTGATGAGCTTTAAGCGCAACACAATTCTTGAATACATTGTGCTGAATTTTATTTTGCAGGAAATGAAAAGTGTGTTCAAACTTTTTCTTCTTTCATTATTTGAGAGTTTTAATTGGTTTTTTTTTGTGAATAAAACACAAGTACACCCCACCCCCTTACTAAAATTGTTTTTCCTATACTTCGGCGGACTATTTTGAAGTGGAATTATTGTTCCCTCTTTTGCTGACATAGCATGGATTGATTTACTCTCTTAAAACGCATGAGAGGCATCGGGAAAACACTCTCTTGGCTTGGGAACTCAACTTTTGGTCGGCCAAGCTGTACCATTCAACTTCTACTTCACTCTATCTATCATTAAACGAGCTACATGACTCAGGTAGCTTGTCTCCAGAACCTCCACTTCCCACATCGAGCTTATCTCACTGACCTCCAATCCAACTCCTTTATCACACTAAGAGCTCCTTATTTAGCCGTAGCAAACAAACAATTAACATGTGCAGGAAACTACCCCATAACAAAATCCACTTACTTCACCTTGCAGACTTCAGTCCAAAACCACATCCTAGATCCATCTAAAGGGACCTTCTATATAGGTGCTTTCTGAAGAGATGCTTATAGCTCCAACTTAAGCTTGTTAGACTTAGTCCTAGGATTTTGCATTTGCTTTTTCAGTGAATGATCAGTTTTTTTTGCGTGTGATTTGTTGATTCGAGTGGTGAAAGTTGAGGTTTTTGTGTATAGAAAGGGAAGATGAAAGTGAAGCTAAAATAGGGAAAAAAAGGAGAAATGGGTAATGACATGGTGGCAGCACGTGTATATAAACACATTTTCTCATTTGGGTAAATAAATACTTCTTAGACCTGGAAGCATTCTAGATGTCCTAAGATGCTGGAATATGGATGGTAATGTGAGCAAGAAGGAAGAAAAATGGAAGATCGTCCCAGCATGTATTTGGTGGTCAATCTGAATTGAGAGGAACAAAAGGTGCTTTGAGGGGACTCAAAACAACATTCAGAATCTTAAAATGAATTGTTTAGGCCTTTATTATTTTTGGTGTGAGCAAAAACTACTAGCTCAAGCAGAAGATATTTGATGTTTTAAACTTTTGTAAGGCACAGAACTGAATCACAATATTTAAGTTGTAATACTTTTGAAGGGGTACTACATTATGGTTGTAGTATACCTGTGGATATATAGAAGTAAAGTTACCATTATAAAAAAAAAAGGGTGTGTGCTGTGAGATACAAGGAAGTGGGTAATTGAACCCCTCAAAATTCAACTGTGTAGTTCAGTAGTTGACAAATGAGGGGGCTAGTTTGGAGATCAATATTTAGCTTAAGCGTTAAAGTAGCGGCAAGTCCTCGTGTTTGTTGTACTTCGTTGAGTCCGTCAGTATTATATTTTTTGTAAATAAATTAATAAAGCTTTTCGAGCTCTCTTTAGACTTGTAAAAAAAGATTTTTGAGTATGTGAATAAGAGGACTATACTCTATCAGCCTTCCTTTATCAGAGATTTTTCATACTTCTTTGGTTTTTCCCTAGGCCCCTTTGCACTGTCCCTCCAAAAAAATGAATAATCATGTGATGCCCTCTGCTGTTCCATTCAATGAAACATTTACTTCATCAAAAAAAAAAAAAATCCTCCCGTCCACCTGCACTGTGTTTTAATGTTATGCTGGGTGGTAAATTAGACTTTGATTCCTCAAATTTTGATTTCGATCAACTGGGAATTTCAGATTATAGAGTTTGTTTCAGTCTTGGTGAGTGTTAGCAGTGAAGCTGCTGAAAAGGAGTTGATTCGGCTTGGTGCTGTTAAACGCATCTTAGAATTGTTTTTTGAGTAAGTGCTCTTTATAATTACTATGTTACTATATTATCAAATAACCTTCTGATTTCTGTTACTTGATAGAGTGTCTAGGTATTTGATGTCGGTTTCTTTGTTATTGAATCCAGGTATCCATACAACAACTTTTTGCATCATCATGTTGAGACTATAATAATTTCGTGCCTGGAGAGTAAGAATATTCAATTTGTTGACCATCTTCTTAGTGACTGTAATCTTCTCTTGAAAATTCTCGAGGCAGAGAAAAACTCAACGCTTGCTGCTGATCAATCCAAGGTATTAATCAAAATTTAGGTGTTTTGACTCAATATTCTTAATATTACTTGTATATTGGGCTGTATATGTTGAAACCTTTGGTCACTTAAGTTTTTAAATGTGGATGCAGCCAACGGCCTCTGTTGAGGGAAGAACCCCACCCAGGATTGGAAACATTGGGCATGTGACGCGAATAGCTAACAAACTTGTTCAACTAGGGAACAATAATAATGGCATACAGTCGCGTCTGCAGGTGTTTGAAATATCTTGTTTCATGTGTTATTTGTTCATGTAGTTCTTCCAATTTGATTACGTCCTGTTTTACTGTGCTATTCAGCTACACAAGGCACAAGGATGTTTGCACTTTGAGTAGCTGATTTTGCATTTGATAAATAGAGATTTCTTAAGGTCCATTTGGCAGTTGCTAAAGTAATGTGTTCTGCATTTTCATCAAGTGGGGCAATTAGGGGAAGTAATGAGAAGCATGACACTATTGAATAGGGATAGAGGGAGTGAGAATTTTCACAGGACACAAGTGACTTCTTTATGCATATTTCATTGGTCATCGCAGAAGTTGCTCTACTCATACTACCTGGTAGTGTAATAGATGTTCAATCAACTACTCCTCAATCCCTAACTAGTTGGGATTAATTATATGAATCCTCAATATTCATTCTGCTTTATTAGAGCCCATTTCATTCCAATATTAAGTTATGTCTTTTAAAAAAGTCACTAAATCCCACATGTACATTGTTATCTAAGTCTATATGCAGACTAATGAGTCTTATGACAAATACCAAACTTAATTAAAGTGTATCAACAATTAAACTTTATTTCAGTTAGTTGGTATTGCATATATGAATCCTTTATATGAGAGATCCTGACTCTGTGTGTATGATTTTAGGTCTACCTCCTCTTTTAGCACCTTTACTCATTATAGTGTTGCACCTAGATTGCTGTACGTATGGAGGTTCACATATGACAGTGCAAACCATCTTAGACAACTTTCTCTGTTTTTATCCTCTGCATGGTATATGCACCTTGTGGTAATTTTTTTTGTCTTTTCAATCTTGTATTGCCGCACATCCATCTTAGGATTAATATTTTTATGACATCCATCTTGTGAGACCCAATATTTGATTACATATATACAACCACTCTGTGTAAATTTCTATTGCATAACACTGTCATTGTGTTCTCATATTTCAACCATCTTGTTTTAATGGATGGGTCACATCTTGATTGTCACACCTTTTCCTAGAGACTGAATGTAGATTTACATATCATTTTTTGATAACTGAGAAATCCGTTCGTGACCCGCCATTTGGACCAATCACAGCCTTTTAAACTCGGGGAATAATGGGCCTGCCCCTCTACACTTTTCCACTTAAATACCAAGCTTCGTTTTGCGTGGTGTGGTGCAGGGCGACCTAAGCCGCAAATCCTCCACCTTTTGCCACTAGAGCTAGCCTTGGGGGCAGATTTACAAATCTGTTGCATTAGACGCTACATTCTCCTGGTAGTTTACTTGTGTTGCTAGAAGAAGCTTGACTTACTAAAAGCTCTGTGTTTGGGAAGTTGATGTTGAGGTGATTCTTTTTCTTGTTTCTCTTAGATTACCTACAAAGTTGCTCTAATACCTAATCATATTTCTTAACATAGCTTCATTTTGGCAAAATTTCATGGCTGGTAGTGGACGAATGATTTTGGCTAAATTTCATTGACCTAAAGTAAGTAGGCAGTAGTGTGTTGTCTGCTGCTAGTAATTGTTGTATTGCTCGTGTATTTTTTTGTCCCTTGATTTGTGTTACTTTTTGTTGTTTCTTGTACTTCGATCAGATTGCTTTGTTATGCTTTCACTTCTATTTATTCTTTTTCTGTACTGTGTTGGAGTACTGTTTTTCCTTGAGCGGAGGGTCTATCGGAAACAACCTCTCTACCTCTACTGTAGGGTATCCTCCCCAGACCCTACTTTGTGGGACTACAGTTAGTATGTTGTTATTTAGTACCTAATGTAAGTTTTATAACTAAAATATACCTTCAGTTTCAAAAAAACAAACAAACTAAAATATACTTAAATTCTACATTTAAATAACAGAAAGTCCAGCCCACATTTTTTTGATGTGGAAGAACAATTTCCAGTACAAAATATGTACACAAATTATCAAGAAGATCCAACTCACCTATCAACTACTTTTTAAAACCTATTTACCCATTACCTAAAATATGCGATATGCCCACATGATTATAAGTTGTATAGTGTATTACCTGTACTTATTTAGTCTATACGTACTGAGAAATTACATTGACCTCTGATGGAGTGATTTTCAATTGACCATTTGGAAAAAAATCTATATAATCATTTGGGGATAATCATCTTGGGTACCTTGAGGTTAATTTCAGAAGATGCCTTTTATTATATAGAGAATTCACCTACTCACGTCAAGTCTCTTCTATTTGATTGTTTTTCTTTAGTGCAGTCTCACTTTAGTGATTTGATATGGTCAAATTTCCTATCTGCATTAGTTTGCGAGGTTGTTAGTGATTGCCTCCGTTATGTATTCAAGTAGGAGCCCTTCACAGTTCCTTTTTATGCTTGACATTTGCAATTTTTTTTAAATGTAAATTCCTTGTCCTAAATGCAAGTTCTTTTTGGCAGGAGAATAGTGAATGGATTGATTGGCAGACAAATATTCTTCAAAAACGGAATGCTGTGGAAAATGTTTTCCAGTGGGCTTGTGGGTGAGTGCCTTATTGCCTGCTATCAATTTGTGCTGGTTATTTTTTTTTTTTTATAGTGTAGGGGGATGGGGGATTGCTTCCAAGTAAATAAACCACCTGCAGAGAAGAAGGCATGCACAAAGGATAGTGATGCAAATATGAAGATATTAGGTAGATTCATGTAGTGTCATACCGTGACTGCATTACTAGGATTATGAAATACTTGAGAACTGGAATTGAGCAGTCTTTGTTGTGGGATGTGTTGTGCATTGTTTGTTAATACAAGAGATGTATCAATCACACACTACTGCCCCCCTCCCCTTGCTACCTTCTTGTTGGAAAGGCATAACTTGATCTCTGTGAGTAACACAAATAATTTGGCTCAGCTATATTTCTCATTATTCGTTTTGCTCCAAATAATATTGTGAGGAGTCTTTGTTAATTGACTAGTTCTAGATTGGTTGTCAACCTATACACATCCACCTTTATCAGAATTCAGAAAAGGTTTGAGTTCTGCAACTTGTTTTATCCCGATTTAGGAATGGAAGTCTGAAATTCACAGACACTGAGCTGCCCAAGTTCAAAAACAGAGTTGGTTACATATTTGTTGAATTATTCAAAAACAGAAATTGAGCTGCGTAAGTTCTGGCTTCTCCTTTTGTTGGTTAACATGGATGATACTCATGATAGATCTCACTCTCACTCTCTCTCTCTCACACACACAAAAAAAAAAAAAATTAACACTTGCTAGCCATCTTGTTGAAAAGGCATTACCTGGACTCTGAATAAGGCAAATAGTAGCTGCATTGTTAGTACCTCTATTTTTATTTTGCTTGTTTTTTATTTGATACAGCAGGGGTGTGAGGCAGTGAAAACAAGGATTGTGTGTGTACTAAATTGTTGGTGTTGTTTGATTAAGAAGTGCAATGCAAAAGAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGTGTTTGATTGGGCACAAAGTTTAAGAAAGAATGAATTTTGAAACTTGTGGTCTTGAACAAGCCGTAGATATTTGTATCATTAAAAATCTTCTCATTAAGGGTAGAATGGGAAGTATAAAATTCATTTGTTACTCCCTCTGTCCCGATTTATGTGGCAAACTTTCCTTTTTAGCCTGTCCCAAAAGGAATGATACATATCTATATTTAGTACAATTAAACTTTTTAAAATGTCTATGTTACCCTTAGTGAGATGATTTATAGCCACACCAACATCTATGGCTTGTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATTGGGATGCAGAAAGTACGAAATATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGTATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAGGTGTTCTTCATATCCCTTAACAAAAGACAACATGATTGTGCATTTCTTGATCTCTCTCTATCTTTTAGCATTTAATAGTGCTGGCTAGGTTCCTGTGTTTATATCTGGAGAAGGTAATGACAGAAGGTTTGGAACATTGATAGGTAGTTGGAGAATTTATCTTTCTTATATTTAGAGTAGTTCTTTCTTAGAGCTGCATGCTATGTATAATCTTTAGAGATGAAGTAAAATGAGCACAGTAAATGTGCTTTTTGATTCATATTAAGTGCCCACACCTTTTTGCATATCTAATTATTTATAATTGAATTTGAAGTGTGGTTTTGATTTTTATCTGCAAGTCCCAATCACAGGAATGTTGTTCAGAATCGGTGGTTGAATTTTTGACTGTAAAAAGCCTCTGCTGAAAATGGTATAAGATCCATAATTCAATATAGATGTAGCAGGGTTAGACAGAGGGTCCGGGAATCTGTGCCAGCCTCTTGTAACTGTTATATGGTCATGGTATAACAGCCTAGATGTAGTAGGTTAAGACAGAAACCAGTGAGAGCTAGAATGAATTTTATTCTGTTAATAGCATCTTCCTAATTCTGTCATAATTAGGAATGTTGGTATTTAGTGATCTTCCTTATTAAATGACTTTCATTTTAAGTTTAAAGAAACCTTATCTCAAGTAGCCTAAACTATGGAGCACTCTGTAGATTGTCTGCAAGCAATTCAATACAAGTTATATCTTAAAGTGCCAAAACAATGGATGCTTGATTTTGCTTTTTTTTTTTCCTTTCCTGGTTTTTCTTGTTTTGAACCTTTTTTTGTTCAACTTCATCTTTAATCTTCACATATCAATTTTTTAAGCACATGGTCATTAAGTGTATAATCATTAAAAATGTACTAAAGGAAGACTTTATCTGCGTGCAGGCTCGTGGTTCACTTGAGCGGGATGATGAGGTAACTGTTGAGGTTTTATTTAGTCCTTCAGTGATTACTTAGTTAATGAGATATACGAACTGTCTGCTACCGTACTTCTATATGCTGTTTCTGCATATGCTCTAGTGAGAGGGTACAGGGCGTACTTTCTCTCCCTCACCTCCACTTTTCATTCACAGCCATGAAGTGCGTCTTCATATAGCGGGAAGATATTTAGAGGAGGTGCAACTAATTTGTTACTAAGGCATAGTCAATTGTATTGATTGATTGATATCATTCTTCATAATGATGATCATTAGAGAAAGTTGAGTCGATTTGTAAGGCAGACCACCTCTGTTCCACCTTCAATACTGATCATCCCTTTAATTCAATGTGGCTGACAGGAACTTCTTTTTGGTCATTAGCAATACTTCCAACAACTCCCTCCGTCCGGATCTTGTCACATTTCCTTTTTCGAGGGTCAAACTTCATAAACCTTATCCAACATTCTAAGATGTATTTTCCACCGTATTGATATTAGAAAAAATGCAACTTATAGTACTTTTCATATAGTTTATGAATCGATAAGTTTTACTCTTAAAATATTAAATTAATCTAATTCAATTTAGCTCCGAAGATTAGTCACTCTAGAAAACGATACTTGACAAGTACTTTGGGACAGAGGGAGTAGTTCTGAAGTCACCTATTAGCTTATCAAAATACCCACATTGCCCTTAGCTTTTGATTGCTTTAAAGCCAGTTAGTTATCTGTGCATATTTAGTTTATTATTTTATTAATTAAATAAACATGTCATTTGTGATGGAAGAATGAAGCGATATAATATTGCATGTAGGAATATCTAACGGAATTTTCTTGCTAGCTGTATGTCCACCTTGTCATATCTTATAATATATATATCTCAAAGAAGTAGGCTCTACAAATGACTTTAAAGTTTAAAGGGTAATCTCATACAAACTGTTATACCCTTTAACCTTGAGTTTGGAGCATTTATAGATATCTTGTTAAAATTCTCATAGAGGGTATGTATAACAGTTCTGAGATAATGGTCGATTTTATAACTCACTTGTGTGCTTTCTCCTTAAGAAATTTCAAAAGCATTTTTCCAACTTAATTTTTTCTTTTGGAAATCCTCCTATTTAGTATTAATTATGTTGTCATGACCAATGTCACTAAGGCTCACATGGAAAAACCCTCTTAAGCCTAAAGCTTGGTGAAGCGCAGGTTGGGTGTTTTGGCTAAGCTTAGATGACCTTTTAGTGCAGTCACCAAGGTTCTAGGACCTATGCTTTATCACCATGGCTCTGGCTTTAGGAGGACCATACTAGAAAGTAAATATAGTTCGTGAAGTAGTAGATTGATTGCTAATAGAACATTATGAATGGAGTTCGAGTGATTACAACTAGAAATTAGTAAAATTTGGTATAAATACCTAGTCACTAAAACTTGGCACTGCATCCCTACATCTAAATCAGAACTTCAAATTTATGTTTGAACTCAGTGACATGATTTTTGCTTCATATATTTAATTTTAATCTTTCAATTCCTTAATCCAGATAATTGGTGTGTTTACATTTATTTTTTCTTCATTAGTGCTCTCTTCTCTGGACCTATTTGTGCTTTGCGCTCAAGTCTTAGTAGTCATGACGTTGCTTTACGCTTTTTGCCTGTGGCGATGCACAACTTGTGCCTCTTCAGGCAACTCATTTACACTAACTCTTCTGATTTTCTGTAGGATGTCTATTTTGATGATGAGTCTGCTGA</genome_strand>
        <mrna_strand>ATGGGAGCTTACATCCACCGCTTGGGAAGCATCGTCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAGAGTTTGTTTCAGTCTTGGTGAGTGTTAGCAGTGAAGCTGCTGAAAAGGAGTTGATTCGGCTTGGTGCTGTTAAACACATCTTAGAATTGTTTTTTGA.................................................................................................................GTATCCATACAACAACTTTTTGCATCATCATGTTGAGACTATAATAATTTCGTGCCTGGAGAGTAAGAATATTCAATTTGTTGAACATCTTCTTAGTGACTGTAATCTTCTCGTGAAAATTCTGGAGGCGGAGAAAAACTCAACGCTTGCTGCTGATCCATCCAAG.............................................................................................................CCAACAGCCTCTGTTGAGGGAAGATCCCCACCCAGGATTGGAAACATTGGGCACGTGACGCGAATAGCTAACAAACTTGTTCAACTAGGGAACAACAATAATGGCATACAGTCGCGTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGGATTGATTGGCAGACAAATATTCTTCAAAAACGGAATGCTGTGGAAAATGTTTTCCAGTGGGCTTGTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAATTTAAGTCAGGCCTTCCGCTATGGAATCTANTACAATGATGAACTTGATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTGGTTCACTTGAGCAGGATGATGAN................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCTATTTTGATGATGAGTCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425797" ref_strand="+" ref_description="SGN-E425797 [STM-45-H23]">
      <seq>atgggagcttacatccaccgcttgggaagcatcgtctgaagataatagagtttgtttcagtcttggtgagtgttagcagtgaagctgctgaaaaggagttgattcggcttggtgctgttaaacacatcttagaattgttttttgagtatccatacaacaactttttgcatcatcatgttgagactataataatttcgtgcctggagagtaagaatattcaatttgttgaacatcttcttagtgactgtaatcttctcgtgaaaattctggaggcggagaaaaactcaacgcttgctgctgatccatccaagccaacagcctctgttgagggaagatccccacccaggattggaaacattgggcacgtgacgcgaatagctaacaaacttgttcaactagggaacaacaataatggcatacagtcgcgtctgcagtgaatggattgattggcagacaaatattcttcaaaaacggaatgctgtggaaaatgttttccagtgggcttgtgggagacccacatcactgcatgaccgaatgagggacagtgatgatgatgattatcaagatagagactatgatgttgcagctctggcaaataatttaagtcaggccttccgctatggaatctataacaatgatgaacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="108973" stop="101060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108673" g_stop="108633" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108632" i_stop="106397" i_length="2236">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106396" g_stop="106293" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="145" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106292" i_stop="106180" i_length="113">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106179" g_stop="106014" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="311" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106013" i_stop="105905" i_length="109">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105904" g_stop="105782" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="434" r_length="123" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105781" i_stop="103368" i_length="2414">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103367" g_stop="103293" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="509" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="103292" i_stop="101498" i_length="1795">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101497" g_stop="101360" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="647" r_length="138" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E425797" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108673" e_stop="108633"/>
          <exon e_start="106396" e_stop="106293"/>
          <exon e_start="106179" e_stop="106014"/>
          <exon e_start="105904" e_stop="105782"/>
          <exon e_start="103367" e_stop="103293"/>
          <exon e_start="101497" e_stop="101360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAGCTTACATCCACCTCTTGGGAAGCATCGTCTGAAGGTAGTTATCAAACATCTTCTTGTATGCAGAGATCGTAAATGCAAAGGTTGTTTATGCGGAGATTAATAATGAGGAGATCTTTATACATGAATTACTTGAACAGAATATTGTCTTTGAATAGTTTATTCCCCGTATTGCTAATACACGTATTTTCGATTCTCATTCTATCTTTAGATTCCACATGACTTTAATGTTTGTGTTAGTTAGTACTTCCAACCAAACGTTGCAGTTATGTTGTGATTATTTCTTTCTTATGAGGCTAACCAAATACTATACCATCTTTTCACCTTGAATTGGTCAAAATATGCAGACTTTCTTACTTTTCGTGGAGGATTAGAGGCGGAGTTTTATGGTTTGAGTAATTATTTCAAATCATCAAGTAAATGCTCTTCAAGCTTCTGTCTTGGAATTAGAAATGGATATAATTTAGTATCACTTTTGATCTAACTTAGAGAGGTCAGCATTGTCAAAGACGAAAAGTGCTTAACAACGTCAGGGTCTGATGAGCTTTAAGCGCAACACAATTCTTGAATACATTGTGCTGAATTTTATTTTGCAGGAAATGAAAAGTGTGTTCAAACTTTTTCTTCTTTCATTATTTGAGAGTTTTAATTGGTTTTTTTTTGTGAATAAAACACAAGTACACCCCACCCCCTTACTAAAATTGTTTTTCCTATACTTCGGCGGACTATTTTGAAGTGGAATTATTGTTCCCTCTTTTGCTGACATAGCATGGATTGATTTACTCTCTTAAAACGCATGAGAGGCATCGGGAAAACACTCTCTTGGCTTGGGAACTCAACTTTTGGTCGGCCAAGCTGTACCATTCAACTTCTACTTCACTCTATCTATCATTAAACGAGCTACATGACTCAGGTAGCTTGTCTCCAGAACCTCCACTTCCCACATCGAGCTTATCTCACTGACCTCCAATCCAACTCCTTTATCACACTAAGAGCTCCTTATTTAGCCGTAGCAAACAAACAATTAACATGTGCAGGAAACTACCCCATAACAAAATCCACTTACTTCACCTTGCAGACTTCAGTCCAAAACCACATCCTAGATCCATCTAAAGGGACCTTCTATATAGGTGCTTTCTGAAGAGATGCTTATAGCTCCAACTTAAGCTTGTTAGACTTAGTCCTAGGATTTTGCATTTGCTTTTTCAGTGAATGATCAGTTTTTTTTGCGTGTGATTTGTTGATTCGAGTGGTGAAAGTTGAGGTTTTTGTGTATAGAAAGGGAAGATGAAAGTGAAGCTAAAATAGGGAAAAAAAGGAGAAATGGGTAATGACATGGTGGCAGCACGTGTATATAAACACATTTTCTCATTTGGGTAAATAAATACTTCTTAGACCTGGAAGCATTCTAGATGTCCTAAGATGCTGGAATATGGATGGTAATGTGAGCAAGAAGGAAGAAAAATGGAAGATCGTCCCAGCATGTATTTGGTGGTCAATCTGAATTGAGAGGAACAAAAGGTGCTTTGAGGGGACTCAAAACAACATTCAGAATCTTAAAATGAATTGTTTAGGCCTTTATTATTTTTGGTGTGAGCAAAAACTACTAGCTCAAGCAGAAGATATTTGATGTTTTAAACTTTTGTAAGGCACAGAACTGAATCACAATATTTAAGTTGTAATACTTTTGAAGGGGTACTACATTATGGTTGTAGTATACCTGTGGATATATAGAAGTAAAGTTACCATTATAAAAAAAAAAGGGTGTGTGCTGTGAGATACAAGGAAGTGGGTAATTGAACCCCTCAAAATTCAACTGTGTAGTTCAGTAGTTGACAAATGAGGGGGCTAGTTTGGAGATCAATATTTAGCTTAAGCGTTAAAGTAGCGGCAAGTCCTCGTGTTTGTTGTACTTCGTTGAGTCCGTCAGTATTATATTTTTTGTAAATAAATTAATAAAGCTTTTCGAGCTCTCTTTAGACTTGTAAAAAAAGATTTTTGAGTATGTGAATAAGAGGACTATACTCTATCAGCCTTCCTTTATCAGAGATTTTTCATACTTCTTTGGTTTTTCCCTAGGCCCCTTTGCACTGTCCCTCCAAAAAAATGAATAATCATGTGATGCCCTCTGCTGTTCCATTCAATGAAACATTTACTTCATCAAAAAAAAAAAAAATCCTCCCGTCCACCTGCACTGTGTTTTAATGTTATGCTGGGTGGTAAATTAGACTTTGATTCCTCAAATTTTGATTTCGATCAACTGGGAATTTCAGATTATAGAGTTTGTTTCAGTCTTGGTGAGTGTTAGCAGTGAAGCTGCTGAAAAGGAGTTGATTCGGCTTGGTGCTGTTAAACGCATCTTAGAATTGTTTTTTGAGTAAGTGCTCTTTATAATTACTATGTTACTATATTATCAAATAACCTTCTGATTTCTGTTACTTGATAGAGTGTCTAGGTATTTGATGTCGGTTTCTTTGTTATTGAATCCAGGTATCCATACAACAACTTTTTGCATCATCATGTTGAGACTATAATAATTTCGTGCCTGGAGAGTAAGAATATTCAATTTGTTGACCATCTTCTTAGTGACTGTAATCTTCTCTTGAAAATTCTCGAGGCAGAGAAAAACTCAACGCTTGCTGCTGATCAATCCAAGGTATTAATCAAAATTTAGGTGTTTTGACTCAATATTCTTAATATTACTTGTATATTGGGCTGTATATGTTGAAACCTTTGGTCACTTAAGTTTTTAAATGTGGATGCAGCCAACGGCCTCTGTTGAGGGAAGAACCCCACCCAGGATTGGAAACATTGGGCATGTGACGCGAATAGCTAACAAACTTGTTCAACTAGGGAACAATAATAATGGCATACAGTCGCGTCTGCAGGTGTTTGAAATATCTTGTTTCATGTGTTATTTGTTCATGTAGTTCTTCCAATTTGATTACGTCCTGTTTTACTGTGCTATTCAGCTACACAAGGCACAAGGATGTTTGCACTTTGAGTAGCTGATTTTGCATTTGATAAATAGAGATTTCTTAAGGTCCATTTGGCAGTTGCTAAAGTAATGTGTTCTGCATTTTCATCAAGTGGGGCAATTAGGGGAAGTAATGAGAAGCATGACACTATTGAATAGGGATAGAGGGAGTGAGAATTTTCACAGGACACAAGTGACTTCTTTATGCATATTTCATTGGTCATCGCAGAAGTTGCTCTACTCATACTACCTGGTAGTGTAATAGATGTTCAATCAACTACTCCTCAATCCCTAACTAGTTGGGATTAATTATATGAATCCTCAATATTCATTCTGCTTTATTAGAGCCCATTTCATTCCAATATTAAGTTATGTCTTTTAAAAAAGTCACTAAATCCCACATGTACATTGTTATCTAAGTCTATATGCAGACTAATGAGTCTTATGACAAATACCAAACTTAATTAAAGTGTATCAACAATTAAACTTTATTTCAGTTAGTTGGTATTGCATATATGAATCCTTTATATGAGAGATCCTGACTCTGTGTGTATGATTTTAGGTCTACCTCCTCTTTTAGCACCTTTACTCATTATAGTGTTGCACCTAGATTGCTGTACGTATGGAGGTTCACATATGACAGTGCAAACCATCTTAGACAACTTTCTCTGTTTTTATCCTCTGCATGGTATATGCACCTTGTGGTAATTTTTTTTGTCTTTTCAATCTTGTATTGCCGCACATCCATCTTAGGATTAATATTTTTATGACATCCATCTTGTGAGACCCAATATTTGATTACATATATACAACCACTCTGTGTAAATTTCTATTGCATAACACTGTCATTGTGTTCTCATATTTCAACCATCTTGTTTTAATGGATGGGTCACATCTTGATTGTCACACCTTTTCCTAGAGACTGAATGTAGATTTACATATCATTTTTTGATAACTGAGAAATCCGTTCGTGACCCGCCATTTGGACCAATCACAGCCTTTTAAACTCGGGGAATAATGGGCCTGCCCCTCTACACTTTTCCACTTAAATACCAAGCTTCGTTTTGCGTGGTGTGGTGCAGGGCGACCTAAGCCGCAAATCCTCCACCTTTTGCCACTAGAGCTAGCCTTGGGGGCAGATTTACAAATCTGTTGCATTAGACGCTACATTCTCCTGGTAGTTTACTTGTGTTGCTAGAAGAAGCTTGACTTACTAAAAGCTCTGTGTTTGGGAAGTTGATGTTGAGGTGATTCTTTTTCTTGTTTCTCTTAGATTACCTACAAAGTTGCTCTAATACCTAATCATATTTCTTAACATAGCTTCATTTTGGCAAAATTTCATGGCTGGTAGTGGACGAATGATTTTGGCTAAATTTCATTGACCTAAAGTAAGTAGGCAGTAGTGTGTTGTCTGCTGCTAGTAATTGTTGTATTGCTCGTGTATTTTTTTGTCCCTTGATTTGTGTTACTTTTTGTTGTTTCTTGTACTTCGATCAGATTGCTTTGTTATGCTTTCACTTCTATTTATTCTTTTTCTGTACTGTGTTGGAGTACTGTTTTTCCTTGAGCGGAGGGTCTATCGGAAACAACCTCTCTACCTCTACTGTAGGGTATCCTCCCCAGACCCTACTTTGTGGGACTACAGTTAGTATGTTGTTATTTAGTACCTAATGTAAGTTTTATAACTAAAATATACCTTCAGTTTCAAAAAAACAAACAAACTAAAATATACTTAAATTCTACATTTAAATAACAGAAAGTCCAGCCCACATTTTTTTGATGTGGAAGAACAATTTCCAGTACAAAATATGTACACAAATTATCAAGAAGATCCAACTCACCTATCAACTACTTTTTAAAACCTATTTACCCATTACCTAAAATATGCGATATGCCCACATGATTATAAGTTGTATAGTGTATTACCTGTACTTATTTAGTCTATACGTACTGAGAAATTACATTGACCTCTGATGGAGTGATTTTCAATTGACCATTTGGAAAAAAATCTATATAATCATTTGGGGATAATCATCTTGGGTACCTTGAGGTTAATTTCAGAAGATGCCTTTTATTATATAGAGAATTCACCTACTCACGTCAAGTCTCTTCTATTTGATTGTTTTTCTTTAGTGCAGTCTCACTTTAGTGATTTGATATGGTCAAATTTCCTATCTGCATTAGTTTGCGAGGTTGTTAGTGATTGCCTCCGTTATGTATTCAAGTAGGAGCCCTTCACAGTTCCTTTTTATGCTTGACATTTGCAATTTTTTTTAAATGTAAATTCCTTGTCCTAAATGCAAGTTCTTTTTGGCAGGAGAATAGTGAATGGATTGATTGGCAGACAAATATTCTTCAAAAACGGAATGCTGTGGAAAATGTTTTCCAGTGGGCTTGTGGGTGAGTGCCTTATTGCCTGCTATCAATTTGTGCTGGTTATTTTTTTTTTTTTATAGTGTAGGGGGATGGGGGATTGCTTCCAAGTAAATAAACCACCTGCAGAGAAGAAGGCATGCACAAAGGATAGTGATGCAAATATGAAGATATTAGGTAGATTCATGTAGTGTCATACCGTGACTGCATTACTAGGATTATGAAATACTTGAGAACTGGAATTGAGCAGTCTTTGTTGTGGGATGTGTTGTGCATTGTTTGTTAATACAAGAGATGTATCAATCACACACTACTGCCCCCCTCCCCTTGCTACCTTCTTGTTGGAAAGGCATAACTTGATCTCTGTGAGTAACACAAATAATTTGGCTCAGCTATATTTCTCATTATTCGTTTTGCTCCAAATAATATTGTGAGGAGTCTTTGTTAATTGACTAGTTCTAGATTGGTTGTCAACCTATACACATCCACCTTTATCAGAATTCAGAAAAGGTTTGAGTTCTGCAACTTGTTTTATCCCGATTTAGGAATGGAAGTCTGAAATTCACAGACACTGAGCTGCCCAAGTTCAAAAACAGAGTTGGTTACATATTTGTTGAATTATTCAAAAACAGAAATTGAGCTGCGTAAGTTCTGGCTTCTCCTTTTGTTGGTTAACATGGATGATACTCATGATAGATCTCACTCTCACTCTCTCTCTCTCACACACACAAAAAAAAAAAAAATTAACACTTGCTAGCCATCTTGTTGAAAAGGCATTACCTGGACTCTGAATAAGGCAAATAGTAGCTGCATTGTTAGTACCTCTATTTTTATTTTGCTTGTTTTTTATTTGATACAGCAGGGGTGTGAGGCAGTGAAAACAAGGATTGTGTGTGTACTAAATTGTTGGTGTTGTTTGATTAAGAAGTGCAATGCAAAAGAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGTGTTTGATTGGGCACAAAGTTTAAGAAAGAATGAATTTTGAAACTTGTGGTCTTGAACAAGCCGTAGATATTTGTATCATTAAAAATCTTCTCATTAAGGGTAGAATGGGAAGTATAAAATTCATTTGTTACTCCCTCTGTCCCGATTTATGTGGCAAACTTTCCTTTTTAGCCTGTCCCAAAAGGAATGATACATATCTATATTTAGTACAATTAAACTTTTTAAAATGTCTATGTTACCCTTAGTGAGATGATTTATAGCCACACCAACATCTATGGCTTGTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATTGGGATGCAGAAAGTACGAAATATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGTATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGA</genome_strand>
        <mrna_strand>ATGGGAGCTTACATCCACCGCTTGGGAAGCATCGTCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAGAGTTTGTTTCAGTCTTGGTGAGTGTTAGCAGTGAAGCTGCTGAAAAGGAGTTGATTCGGCTTGGTGCTGTTAAACACATCTTAGAATTGTTTTTTGA.................................................................................................................GTATCCATACAACAACTTTTTGCATCATCATGTTGAGACTATAATAATTTCGTGCCTGGAGAGTAAGAATATTCAATTTGTTGAACATCTTCTTAGTGACTGTAATCTTCTCGTGAAAATTCTGGAGGCGGAGAAAAACTCAACGCTTGCTGCTGATCCATCCAAG.............................................................................................................CCAACAGCCTCTGTTGAGGGAAGATCCCCACCCAGGATTGGAAACATTGGGCACGTGACGCGAATAGCTAACAAACTTGTTCAACTAGGGAACAACAATAATGGCATACAGTCGCGTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGGATTGATTGGCAGACAAATATTCTTCAAAAACGGAATGCTGTGGAAAATGTTTTCCAGTGGGCTTGTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAATTTAAGTCAGGCCTTCCGCTATGGAATCTATAACAATGATGAACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576858" ref_strand="+" ref_description="SGN-E576858 [60142]">
      <seq>gctaagtataattcttttatgagcatgataacaattgaaccgaatccaatcttatcaaagactctgctccccacctttttatagggcttcctgggttcaagatcattgttggggttgttttctttttgttcctagatccaaattgttgaaaattctcttcggggtcggttcttgattctgaaaaaatggctatgttttggcgtatggctggcctctccactgcttctccagtggagacaattttggataaggaaaattttgcactgggatgagctcttgggacgaggatgaaataattcaagaatgtaaagctcttaatggacgccttattaattttctgcgagaaagagctcaagttgaacaacttgtcaggtacatagtggaagaggctccagaagatgctgagaagaaacgaacttttaagtttccttttattgcttgtgaaatctttacatgcgaggtggacataattcttaaaggctttggttgagaatgaggaggctaatgagcctgctattctcattttttggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="-" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="118424" stop="112320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118122" g_stop="117920" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="230" r_length="205" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117919" i_stop="114540" i_length="3380">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114539" g_stop="114436" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="336" r_length="106" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114435" i_stop="113065" i_length="1371">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113064" g_stop="112978" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="423" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112977" i_stop="112835" i_length="143">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112834" g_stop="112759" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="500" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112758" i_stop="112651" i_length="108">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.902" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112650" g_stop="112620" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="533" r_length="33" r_score="0.839"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="-" ref_id="SGN-E576858" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118122" e_stop="117920"/>
          <exon e_start="114539" e_stop="114436"/>
          <exon e_start="113064" e_stop="112978"/>
          <exon e_start="112834" e_stop="112759"/>
          <exon e_start="112650" e_stop="112620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAACAATTGAACCGAATCCAATCTTATCAAAGA--CTGCTCCCCACCTTTTTCTAGGGCTTCCTGGGTTCAAGATCATTGTTGGGGTTGTTTTCTTTTTGTTCCTAGATCCAAATTGTTGAAAATTCTCTTCTGGGTCGGTTCTTGATTCTGAAAAAATGGCTATGTTTTGGCGTATGGCTGGCCTCTCCACTGCTTCTCCAGTAACCCCTTTTATTCCCTGACTCATATTTTTATACTTTTTTGTGAAAGTTTATGTACGATTTGAATGTTTGGGGTGCTATATCATCTAGTGTTTATTTATTGGAATTGTATTGGGTGGTTTGTTTTTTAAGAATTTTGATTAATGCAAATGGGTTTTTGTTGAATTTCTTGTTATGCATGTTGTTTTGTGTTTTAGCAGTCTTAATTTTGAATTCAGAATTGTGTAAGGGAAGATTGGTAATGTGATTGTTCTGGACTTTTATAGTGGGGAGTACTTTTTTGGACTGAATTTCTAGTGGAAGTTAATGTTTTGGGGGTCTGGTGTTTACTTCTTATATTCAGATTGTCTTAATTATGCAACTCAAAGAGACTGAGTGTTAAATTCCTTATTGAAAGAGGGTAAAATGAAGAGAGTTGAGTGTTAGATGGACTTGGATGATGGTGGCATTTTTAAAGATATTTTTTGGGTTAATTTTTAGAGCAATGGAACAGTGGCAGAGGAGAAGTTTATGATGGACTGGTGGGCCTTATGATTGGATCTAATTTCTTGAACAAATAGCTGTGGTTTGATGAATTATACATCTTTATAACTGCTAATTGAAGAAAATAGTACCAATGAAGTTCCTGTCTATTAGGTCCTCAATGTTGAACCGCAATTCTACTTTGTGCAGCATTGTGGAATTTTTCGAGGAATGTACTTTTTGTAACTTGCTTTTTGTCTGAACTAAGTGCTAGATTATGTTGCAAATTTTAAGCTATTCTGCTTTCTAGATTGACATCAACGAAGTAAATGATATCTCTTGGTAAAATTATGTTCTTCCCAATGCACTATTTCACTTCAATTCTTATGCCACATACTTGGGCAATGTACCTTTTGCCCATACTAGACACCTTTTCTAAGCATGCCCCGGTAGCCTTTCATTTGGAATTTGTTGTTTTTATGGAATTTAGAGGAGCTGATCCGGGGAATGGAAATCCATTTCTTTGTACCACATACATAGGCCATTTCAAGTCCTATGCCATATACTTGGGCAATTTACCCTTTTCCCATCCTAGACACCTTTTCTAAGCATCTCCAGATAGCCTTTCATTAAGAAGTTGGTTGTTTTTATGGAAGTTAGAGGAGCAGATTCCAGGAATGGAAGTCCATTTGATCGTGCTCTGAAACTTTAAGCCATATAATTGTACTAAATAGGTACAATATATATTTTTCCCCTTTACCCAAGAGAATTCCCTGAGGATCAGTGGCGCACAGTTAGAAACTTGGTGGATAACCCCCTTCTTTTTTACACTTAATACCAGACTTTTGTCTCTAGAGGGTTCAAAACTTGTTATGTGTGCCTAAACCACACATAAAATATAACACCGATAGTATAAGATATCTAACACCTATTTGTTGACTCAATTGTTTGCTAGCTTATTTAATGGGCTAACTTGATAAAGGCTTAACTAATTGAATAATGATGTGACACAATGGCTATGAGTTTTTTTTTGGGGGGGGGGGGGTAAAGGATAAATATGGAATTTTGGAACGAGGTGGAGAACTAGAGACATCACTTTGCCTTTCAGGCGTTGTTTAATTTTGGGGAAATAGATGGCGCGGGGATGACACTTTGAAAGATGATTTCCAGTGTCTCTATAGAATTTCTTGCCAGAGAGATAGTTCAACAAATTAGGGGGACATAGGCGGAGAGACTTTTTGGGACTTGAGCTTTAGAAGGATGTTAAATGATTGGGAAGTATCAATTGTAATTTTAATTGTCTAAAATAATAAAATGATTGGGGAGTAGGTGAGCTCCAAAGATTGTTAGTCTTAGTACATAGGCAAGACAACCCTATTGATAAGCTTGATGCATGGTGGTAGAGATTTAAGGGAAAATGGCATGTTTATTGTGAAGACTTTCTATGAGAATCTATTGCTTAGGGAGGAGCAAGTGTTTCCATGTAATGCAATATGGATCCCAAAGGCACCAAGGAAGGTGTGCTTTTCACTTGGTTAGCCATAAGAGGCTCGATTTTACAATAAAGAACTTAAAAAAAGCAGAAGATTGTATTCATCGGCTGGTGTTACATCTGCAAGGAGGCGGGTGAGGATGTGGATCATCTTCTCCTACATTGCAGTTTGACAATGAGTGTATGGTGGGATATGTTTAGGTGGTTTGGCGCTCCATGGTTATGGAAAAAATGGTGAAAGAATTGATGTTCAGTTGGAAGAGTGGGAGGAGAAGAAGACGAAGGGATGAAATATGGTGCAACTTGCATAATGTGGGTTGTCTGGAGAGAGAAGAATAAAAGAGCTTTTGAAGGTGTAGAGTCGAGTTCCCCTCAAAGTATCATTCATTCCCTTATTTTATTTTGGTGCACTCAGAAAGTCCCCTATTGTGTAGACGATTGGGTGGAGTTTTTAGAGATTCAGTTGATTGTGTAGATTCTTTACCTTTTGGTATACCACTTGTGTATGGTCATTTTATGGCCTTGTTTATTATATGAAATATGTTTACTTGATCAAAAAGATGATGTGACACAAAGGGATGGTTTCATGATGATAATGTAGAGTGAACATGTCAGTTAACTGGACTAATGTAGATTGTTGACATAACAGTTAAATTGACATGTACTGTTCCCTAAAAAGCAGTTGTAGAGTGCTGATTTTACATGTTAGCTACGGGGACAAATGGATCTTCTTCTAGACAATGTGGATGTGTAGTCACTTTATATTACACTGGAAGGATACAGGGTTTCACCACAGCAATCAGTGTCATCTAGATGGTTAAAAGAGACGAAAATAATTGAATTATTAGGAAAGAAGAAAAAACTTTTTCTGTGCTCATGACCTATGGCAAGTCTACTAAATTGACATGTACTGTTCCCTAACAAGCAGTTGAGAGTTTCTGATATGAAGGATAAGGAGGAGACAAAAAAGAGAACTTTTCAAAGATTTTAGTAACAACGTAGGGACTCCATGTATAGTAGTTTGTCCTTTGGAAAACACAAGGTTCTTTATTAAATTGGACCTTGCTAGTGTTATTTAAACAGTAGGTAGGCAGTGAATGTATGACAACTATCTCTCAAGCACATCTTTAGTTCCAATCTCAATAATTAAATTGAATATTCTTCATCATATATTATGGAATTTAAAAATATTCTGCAACTTTTGCTTTGGAGTATTTCAGAAATATTCTTCTACATAAATTTTATGGATGCAAGCGCAAATTAATATTTGATTTCATTACTTCTCGGTTTTCAATATTGCTTACTCCAAAGCTTTGTATCAGTGTTCAATTGAATATTGATGTTGTTTCTCAATAAATAATGTGTGTGGATATTTTATAATAAAAATAATGTGCATAGATTTATAGGATACACTTACTATTTTCAGGTGGAGACAATTTTGGATAAGGAAAATTTTGCACT-GGATGAGCTCTT-GGACGAGGATGAAATAATTCAAGAATGTAAAGCTCTTAATGGACGCCTTATTAACTTGTAAGCACCTTATTCGCTTGGTATGCTAGATATAAGTTGTAATAAAATCAAGTTCTATTAATCTTGGATGTGATGTACAAACTACAAAGTATATCCCAACCATTGATGTTTCATGGAAAATCCATTTAAAGTAAATATCTTTTATTGTGAAAAGAAAAGTCTGGATTTGCTGCTGTATGATGAGGTTTATCTGAGGGAGTCTAGTGATGCATGCGTGCATTTGAAGCTTTATTTACGGTTTAAAATTGGCTAGTCTGGATTTAGTAAGAACAAGTGGTTAACTTTGTAATTCTGGTATGTTAATTAGGACTACAACAATTTTAGTGTGCACCAAATAAACATGCCAAGTTATCCTTCTTGAACACAATTTTTTGTTTTTTGTTTTTGTGGGTAGGGTGGGGGTGTTGGTGGGCTGAGGCAGTGCTTGTATTTTAACAAAACTTAGTTTTGTTTCACTATAGACTGTAAAGATCAGTGTTCTTACGAGTTATCAATTAAATGGTGAAGCAATGGGCTTCATAAAAGTGTGCACTTGAAACAATGACAAGCAATGTGATCCCAATGCGAAGTAGTCTCGGTTATTTGAATCTCAACTTTGAATAGTCGGATTAATATTAGCGTTATTGTTTATTGGATTGTGTAATCAGTTATTTTAATTGCATTCTGATCATTATTTTACTAAATTCATGTAATTTTGGTGATCTTTTTAATGTTGTGAATTCTGAGTTTTACTTCAAAGAAGCATATGCTTCACTTCCAGTATTTTGCTTTAAGCATCATGGACCTTGTCGCTATTTTTTTTCGCTTTTGCTTTTTAAAATACGAGTAAACCCTTCGGGGTGACCCAGTGGTTTGAGCTGGGACTTCCATGTTGGAGGTCACAAGTTCGAAACCCCTTGCCAACGAAAGCAAGGGGTTTGCCTTCTGGGTAGAGCTCGTCACACCAGGCTTGCCTAGTGCGGGTAACCTCTCCTATGTGGTCTGCGAACTATCGCATAGGAGCGGGGTTTTACCCTTTGCGCCCCCAAAAGGGTGGCGGCTGCGGGTTTTCCTTGTCGTCAAAAATAAAAATAAAAATACGAGTAAGATATTTTTGTTTGTTTAGACAATATGGAAGAAGTATCATGTGATGACAGGCTTCTATTTTGTAACTGTCTAACTTTGGGGGACTACCCAGTTTGGTATAGAATACCTGCTAATACATAGAATGTCACCATTATAAAAATGGTAATATTATGGAACTTCTGGTGCCATCTCTGCACAAAATTTTTCTTCTTGTAGGATTTAATGGTCATTTCTTGGAAGAACCTGTCAAAAAAGGAAGTCATTCCTTGGAAGAAACTGATCATATTATGCTTTTCTTTCTGACAGTCTGCGAGAAAGAGCTCAAGTTGAACAACTTGTCAGGTACATAGTGGAAGAGGCTCCAGAAGATGCAGAGAAGAAACGAACTTTTAAGTGAGTGTCTGACTGGTGCTGGAAAGTTATTTACATTTCATATGTTATAGGCTCTGAATATTTCTTTGGATGAAAATATGAGTTCTCTTTTTCCTTGACCCCAGTGCATGTATGAAAAGATATCTTGTTTTACTGTGCCACAGGTTTCCTTTTATTGCTTGTGAAATCTTTACATGCGAGGTGGACATAATTCTTAAA-GCATTGGTTGAGAATGAGGAGGTATTCACTCTTCTTTTTTTGTCATATATCTTTATTCTGCCTTTGTACTATATGCTCAGTTCCTTGAATATTGTTTATATAAATTGGCTTTGTCATTTTGGATGTCAG-CTAATGAACCTGCTATTCTCA-TTTTTGGAAC</genome_strand>
        <mrna_strand>TGATAACAATTGAACCGAATCCAATCTTATCAAAGACTCTGCTCCCCACCTTTTTATAGGGCTTCCTGGGTTCAAGATCATTGTTGGGGTTGTTTTCTTTTTGTTCCTAGATCCAAATTGTTGAAAATTCTCTTCGGGGTCGGTTCTTGATTCTGAAAAAATGGCTATGTTTTGGCGTATGGCTGGCCTCTCCACTGCTTCTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGACAATTTTGGATAAGGAAAATTTTGCACTGGGATGAGCTCTTGGGACGAGGATGAAATAATTCAAGAATGTAAAGCTCTTAATGGACGCCTTATTAATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGAGAAAGAGCTCAAGTTGAACAACTTGTCAGGTACATAGTGGAAGAGGCTCCAGAAGATGCTGAGAAGAAACGAACTTTTAA...............................................................................................................................................GTTTCCTTTTATTGCTTGTGAAATCTTTACATGCGAGGTGGACATAATTCTTAAAGGCTTTGGTTGAGAATGAGGAG............................................................................................................GCTAATGAGCCTGCTATTCTCATTTTTTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594814" ref_strand="+" ref_description="SGN-E594814 [38074]">
      <seq>tcaaaattgatagatcaaaatttttgccaacataaaaataaatattgacctcacaagaaagtacagagaaggctattcctccttttagcatgagccaaaatggacaatgagcaacaagctcaatatcacgaatgcttcaaaggatgcacaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0162I09-2M5zL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0162I09.2" temp_strand="+" temp_description="C02HBa0162I09.2  AC215403.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0162I09 sequenced_by:kribb upload_account_name:korea">
        <position start="119604" stop="120351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119895" g_stop="120051" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0162I09.2" gen_strand="+" ref_id="SGN-E594814" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0162I09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119895" e_stop="120051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATAAAATATATCAAAATTTTTGCCAACATAAAAATAAATATTGACCTCACAAGAAAGTACAGAGAAGGCTATTCCTCCTTTTAGCATGAGCCGAAGTGGACAATGACCAACAAGCTCAGTATCACGAATGCTTCAAAGGATGCACAAAAACTC</genome_strand>
        <mrna_strand>TCAAAATTGATAGATCAAAATTTTTGCCAACATAAAAATAAATATTGACCTCACAAGAAAGTACAGAGAAGGCTATTCCTCCTTTTAGCATGAGCCAAAATGGACAATGAGCAACAAGCTCAATATCACGAATGCTTCAAAGGATGCACAAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>179</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1125" PGL_stop="2622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1125" e_stop="1203"/>
            <exon e_start="2242" e_stop="2622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1125" e_stop="1203" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.957">
            <gDNA_intron_boundary i_start="1204" i_stop="2241" i_length="1038"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="2242" e_stop="2622" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1125" stop="1203"/>
              <exon start="2242" stop="2622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATGGAGATTCTTAAGCTGATCAAAAGGGAATTAACTGGAGAGTCTACCAAGCTAGTAAAATCATCTCCTGCTTAAG : ATAAAGAGTCTAATTCCCGGTGTTTTTTCATTCCAATCCTGCTGGTCCTAGTTTGAAGTTCAACACGATGCTAGAAAAACAGATTTTAGTTCAGCGGGACAGACGACATGTAGTTTGTAGCAACTTGAAATAGCACAAAGTTCTTGAAGTTTCAACTGACCTGTCTTGTAGAGGGTGAGATCCTAGTTAGTTCTGTATATTGTGTATCATCATCGGACAGGAAAATCCCCACATCTTAGTTGCAGCTGTGAAATTTTAGGTACATTTTGTCAGCTTTCTTGTATATAGAGAATCAAAATGTACAGCCTACTTTAGGCTAGTTTAGTTATGGAAATCCATGTGTTTATCATTTTTCTTTTATTGAATAATTCAATTCTGGAA</gDNA_template>
            <first_frame> I  M  E  I  L  K  L  I  K  R  E  L  T  G  E  S  T  K  L  V  K  S  S  P  A  *   : D  K  E  S  N  S  R  C  F  F  I  P  I  L  L  V  L  V  *  S  S  T  R  C  *  K  N  R  F  *  F  S  G  T  D  D  M  *  F  V  A  T  *  N  S  T  K  F  L  K  F  Q  L  T  C  L  V  E  G  E  I  L  V  S  S  V  Y  C  V  S  S  S  D  R  K  I  P  T  S  *  L  Q  L  *  N  F  R  Y  I  L  S  A  F  L  Y  I  E  N  Q  N  V  Q  P  T  L  G  *  F  S  Y  G  N  P  C  V  Y  H  F  S  F  I  E  *  F  N  S  G  </first_frame>
            <second_frame>  L  W  R  F  L  S  *  S  K  G  N  *  L  E  S  L  P  S  *  *  N  H  L  L  L  K  :  I  K  S  L  I  P  G  V  F  S  F  Q  S  C  W  S  *  F  E  V  Q  H  D  A  R  K  T  D  F  S  S  A  G  Q  T  T  C  S  L  *  Q  L  E  I  A  Q  S  S  *  S  F  N  *  P  V  L  *  R  V  R  S  *  L  V  L  Y  I  V  Y  H  H  R  T  G  K  S  P  H  L  S  C  S  C  E  I  L  G  T  F  C  Q  L  S  C  I  *  R  I  K  M  Y  S  L  L  *  A  S  L  V  M  E  I  H  V  F  I  I  F  L  L  L  N  N  S  I  L  E </second_frame>
            <third_frame>   Y  G  D  S  *  A  D  Q  K  G  I  N  W  R  V  Y  Q  A  S  K  I  I  S  C  L  R :   *  R  V  *  F  P  V  F  F  H  S  N  P  A  G  P  S  L  K  F  N  T  M  L  E  K  Q  I  L  V  Q  R  D  R  R  H  V  V  C  S  N  L  K  *  H  K  V  L  E  V  S  T  D  L  S  C  R  G  *  D  P  S  *  F  C  I  L  C  I  I  I  G  Q  E  N  P  H  I  L  V  A  A  V  K  F  *  V  H  F  V  S  F  L  V  Y  R  E  S  K  C  T  A  Y  F  R  L  V  *  L  W  K  S  M  C  L  S  F  F  F  Y  *  I  I  Q  F  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0162I09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7063" PGL_stop="6518"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7063" e_stop="6518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="7063" e_stop="6518" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7063" stop="6518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATTCGGGTGATCAGCACGAGCAGAGTCAAAGTACTGTATACAGTCTTGGACTAAAGGTTGAATACACGGTATGTAACCAGGTGAGCCTTCTGAGTAACCGTGACCTTGTAGGTCAAGAGAACAAACGAAAAATCCAGCTTTCACCATAGCTACTGCATTTAGCTCAAAAAGCCAACTGCTTTCGGACGTATAACCATGAATCATGCCTACAAGACCTCTTAACTGATTACTTGATTCAGGCTGCCAAGATTGTGTGAATATCTTCATGTTTTGTTTGTTTAACATGAAACTTTGTTTGTGCATGATTTTATGTTGCTTGTAAAACTCTTCTCTTGTCAAGTTACCATAAGGGCTGTTCTCATTAGATTGGAAAATTGGGTGAGACATTGTAATGACTGAGTTTGTCTGTTTGTGTTTTGTGTTTGTGTTTGTGTTTGTTGATATATACACACAAATGTGCATTATGATATATCTATGTTGTTCAAGAGTACTGATAGGGTTGGGAGTTTAGCCTCCCAACTGTTTCATGCTGGGGTAATAAAT</gDNA_template>
            <first_frame> E  I  R  V  I  S  T  S  R  V  K  V  L  Y  T  V  L  D  *  R  L  N  T  R  Y  V  T  R  *  A  F  *  V  T  V  T  L  *  V  K  R  T  N  E  K  S  S  F  H  H  S  Y  C  I  *  L  K  K  P  T  A  F  G  R  I  T  M  N  H  A  Y  K  T  S  *  L  I  T  *  F  R  L  P  R  L  C  E  Y  L  H  V  L  F  V  *  H  E  T  L  F  V  H  D  F  M  L  L  V  K  L  F  S  C  Q  V  T  I  R  A  V  L  I  R  L  E  N  W  V  R  H  C  N  D  *  V  C  L  F  V  F  C  V  C  V  C  V  C  *  Y  I  H  T  N  V  H  Y  D  I  S  M  L  F  K  S  T  D  R  V  G  S  L  A  S  Q  L  F  H  A  G  V  I  N </first_frame>
            <second_frame>  R  F  G  *  S  A  R  A  E  S  K  Y  C  I  Q  S  W  T  K  G  *  I  H  G  M  *  P  G  E  P  S  E  *  P  *  P  C  R  S  R  E  Q  T  K  N  P  A  F  T  I  A  T  A  F  S  S  K  S  Q  L  L  S  D  V  *  P  *  I  M  P  T  R  P  L  N  *  L  L  D  S  G  C  Q  D  C  V  N  I  F  M  F  C  L  F  N  M  K  L  C  L  C  M  I  L  C  C  L  *  N  S  S  L  V  K  L  P  *  G  L  F  S  L  D  W  K  I  G  *  D  I  V  M  T  E  F  V  C  L  C  F  V  F  V  F  V  F  V  D  I  Y  T  Q  M  C  I  M  I  Y  L  C  C  S  R  V  L  I  G  L  G  V  *  P  P  N  C  F  M  L  G  *  *   </second_frame>
            <third_frame>   D  S  G  D  Q  H  E  Q  S  Q  S  T  V  Y  S  L  G  L  K  V  E  Y  T  V  C  N  Q  V  S  L  L  S  N  R  D  L  V  G  Q  E  N  K  R  K  I  Q  L  S  P  *  L  L  H  L  A  Q  K  A  N  C  F  R  T  Y  N  H  E  S  C  L  Q  D  L  L  T  D  Y  L  I  Q  A  A  K  I  V  *  I  S  S  C  F  V  C  L  T  *  N  F  V  C  A  *  F  Y  V  A  C  K  T  L  L  L  S  S  Y  H  K  G  C  S  H  *  I  G  K  L  G  E  T  L  *  *  L  S  L  S  V  C  V  L  C  L  C  L  C  L  L  I  Y  T  H  K  C  A  L  *  Y  I  Y  V  V  Q  E  Y  *  *  G  W  E  F  S  L  P  T  V  S  C  W  G  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0162I09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="6723" PGL_stop="7415"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6723" e_stop="7415"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="6723" e_stop="7415" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6723" stop="7415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACAAGAGAAGAGTTTTACAAGCAACATAAAATCATGCACAAACAAAGTTTCATGTTAAACAAACAAAACATGAAGATATTCACACAATCTTGGCAGCCTGAATCAAGTAATCAGTTAAGAGGTCTTGTAGGCATGATTCATGGTTATACGTCCGAAAGCAGTTGGCTTTTTGAGCTAAATGCAGTAGCTATGGTGAAAGCTGGATTTTTCGTTTGTTCTCTTGACCTACAAGGTCACGGTTACTCAGAAGGCTCACCTGGTTACATACCGTGTATTCAACCTTTAGTCCAAGACTGTATACAGTACTTTGACTCTGCTCGTGCTGATCACCCGAATCTCCCTGCTTTCCTGTATGGTGAGTCATTAGGTGGTGCAATTTCTACACTCATATGTCTAAGGCAAAAGAATGTATGGAATGGTCTGATGTTAAGTGGACCGATGTTTGGAGTGTCAAAGAAATACAGACCTGTTTGGCCACTGGAGAAGCTACTACCGTTGGCCGCCTTCATAGCTCCATCATGGAGGATTGTGATCACCAAACCACCTGCATCTATATCATACAAAGAGGAGTGGAAGAGAAAGATTATCTCAAAAAGTCCAAATCGCCTGGCTTCCGAGAAGCCACCAGCTGCCACTGCACTAGAGCTTCTGAAAGTCTGTGAGTATATACAGAGGAACTCTCATGAACTAC</gDNA_template>
            <first_frame> *  Q  E  K  S  F  T  S  N  I  K  S  C  T  N  K  V  S  C  *  T  N  K  T  *  R  Y  S  H  N  L  G  S  L  N  Q  V  I  S  *  E  V  L  *  A  *  F  M  V  I  R  P  K  A  V  G  F  L  S  *  M  Q  *  L  W  *  K  L  D  F  S  F  V  L  L  T  Y  K  V  T  V  T  Q  K  A  H  L  V  T  Y  R  V  F  N  L  *  S  K  T  V  Y  S  T  L  T  L  L  V  L  I  T  R  I  S  L  L  S  C  M  V  S  H  *  V  V  Q  F  L  H  S  Y  V  *  G  K  R  M  Y  G  M  V  *  C  *  V  D  R  C  L  E  C  Q  R  N  T  D  L  F  G  H  W  R  S  Y  Y  R  W  P  P  S  *  L  H  H  G  G  L  *  S  P  N  H  L  H  L  Y  H  T  K  R  S  G  R  E  R  L  S  Q  K  V  Q  I  A  W  L  P  R  S  H  Q  L  P  L  H  *  S  F  *  K  S  V  S  I  Y  R  G  T  L  M  N  Y </first_frame>
            <second_frame>  D  K  R  R  V  L  Q  A  T  *  N  H  A  Q  T  K  F  H  V  K  Q  T  K  H  E  D  I  H  T  I  L  A  A  *  I  K  *  S  V  K  R  S  C  R  H  D  S  W  L  Y  V  R  K  Q  L  A  F  *  A  K  C  S  S  Y  G  E  S  W  I  F  R  L  F  S  *  P  T  R  S  R  L  L  R  R  L  T  W  L  H  T  V  Y  S  T  F  S  P  R  L  Y  T  V  L  *  L  C  S  C  *  S  P  E  S  P  C  F  P  V  W  *  V  I  R  W  C  N  F  Y  T  H  M  S  K  A  K  E  C  M  E  W  S  D  V  K  W  T  D  V  W  S  V  K  E  I  Q  T  C  L  A  T  G  E  A  T  T  V  G  R  L  H  S  S  I  M  E  D  C  D  H  Q  T  T  C  I  Y  I  I  Q  R  G  V  E  E  K  D  Y  L  K  K  S  K  S  P  G  F  R  E  A  T  S  C  H  C  T  R  A  S  E  S  L  *  V  Y  T  E  E  L  S  *  T   </second_frame>
            <third_frame>   T  R  E  E  F  Y  K  Q  H  K  I  M  H  K  Q  S  F  M  L  N  K  Q  N  M  K  I  F  T  Q  S  W  Q  P  E  S  S  N  Q  L  R  G  L  V  G  M  I  H  G  Y  T  S  E  S  S  W  L  F  E  L  N  A  V  A  M  V  K  A  G  F  F  V  C  S  L  D  L  Q  G  H  G  Y  S  E  G  S  P  G  Y  I  P  C  I  Q  P  L  V  Q  D  C  I  Q  Y  F  D  S  A  R  A  D  H  P  N  L  P  A  F  L  Y  G  E  S  L  G  G  A  I  S  T  L  I  C  L  R  Q  K  N  V  W  N  G  L  M  L  S  G  P  M  F  G  V  S  K  K  Y  R  P  V  W  P  L  E  K  L  L  P  L  A  A  F  I  A  P  S  W  R  I  V  I  T  K  P  P  A  S  I  S  Y  K  E  E  W  K  R  K  I  I  S  K  S  P  N  R  L  A  S  E  K  P  P  A  A  T  A  L  E  L  L  K  V  C  E  Y  I  Q  R  N  S  H  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6725" stop="7414"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TREEFYKQHKIMHKQSFMLNKQNMKIFTQSWQPESSNQLRGLVGMIHGYTSESSWLFELNAVAMVKAGFFVCSLDLQGHGYSEGSPGYIPCIQPLVQDCIQYFDSARADHPNLPAFLYGESLGGAISTLICLRQKNVWNGLMLSGPMFGVSKKYRPVWPLEKLLPLAAFIAPSWRIVITKPPASISYKEEWKRKIISKSPNRLASEKPPAATALELLKVCEYIQRNSHEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="11051" PGL_stop="8740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11051" e_stop="10425"/>
            <exon e_start="10313" e_stop="10132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.939"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="11051" e_stop="10425" e_length="627"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="10424" i_stop="10314" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.923">
            <gDNA_exon_boundary e_start="10313" e_stop="10132" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11051" stop="10425"/>
              <exon start="10313" stop="10132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGAAGTTGCGAAAGGCGTTTAACAGCAGACTACCTGTGGGCACCTAAGGAAGCAGCTATAATATGCTTTACCTCAGGCATATACTAACTACCTTTCCACATGTGTGTTTCTTGTTCTTCCATTTCTTTACCATGATTCAGAAAGTGATCTTCAAATACTCTCACACCTACGGAAACTGACAAAATGAAGTTCTAAGAGAAATGTGGTACTGGAAATATCTTTTTTTAACTAAGGAACATAATGTCTCTCCCACAATTTTATCTGGATCAGATTAGGGAAATATCGTGTTTCTTAGCCTCAGTAAAGTTATTTGTCTACTAGCAAAATTTTTGAACAAGAAGATGGTCATATATTTGCTCCAGTGAGAAATGTGTTGTGCAGGTTGAGTCATTGAACTGCATGTCCAAAGTAATGCTTATCTGTTCAATTCTTAAACCCTCAATCTAATCGTGTGTCCCCATTTCTGGTACAAGGAGTATTGCTGAGTGCATTGACTTATATTTAAGATTTTTTTTTTCTGTTCCCTAATGACAATAGGGACCACAGGGAGGCCAAAGGGAGTTACCCTAAGCCACTCAGCTTTGGTGGTGCAATCCCTTGCAAAAATTGCAATCGTTGGTTACG : GTCTATTTACACACTGCACCGCTGTGCCATATTGGTGGTATATCATCAGCCCTGGCCATGCTAATGGCAGGAGGTCGTCATATTTTACTACCAAAGTTTGAAGCTAAATTGGCTGTTGAATCCATAGACCAGCATAGTGTTACTTCTCTCATTACAGTTCCAGCTATGATGACTGATCTAAT</gDNA_template>
            <first_frame> K  R  S  C  E  R  R  L  T  A  D  Y  L  W  A  P  K  E  A  A  I  I  C  F  T  S  G  I  Y  *  L  P  F  H  M  C  V  S  C  S  S  I  S  L  P  *  F  R  K  *  S  S  N  T  L  T  P  T  E  T  D  K  M  K  F  *  E  K  C  G  T  G  N  I  F  F  *  L  R  N  I  M  S  L  P  Q  F  Y  L  D  Q  I  R  E  I  S  C  F  L  A  S  V  K  L  F  V  Y  *  Q  N  F  *  T  R  R  W  S  Y  I  C  S  S  E  K  C  V  V  Q  V  E  S  L  N  C  M  S  K  V  M  L  I  C  S  I  L  K  P  S  I  *  S  C  V  P  I  S  G  T  R  S  I  A  E  C  I  D  L  Y  L  R  F  F  F  S  V  P  *  *  Q  *  G  P  Q  G  G  Q  R  E  L  P  *  A  T  Q  L  W  W  C  N  P  L  Q  K  L  Q  S  L  V  T  :  V  Y  L  H  T  A  P  L  C  H  I  G  G  I  S  S  A  L  A  M  L  M  A  G  G  R  H  I  L  L  P  K  F  E  A  K  L  A  V  E  S  I  D  Q  H  S  V  T  S  L  I  T  V  P  A  M  M  T  D  L   </first_frame>
            <second_frame>  K  E  V  A  K  G  V  *  Q  Q  T  T  C  G  H  L  R  K  Q  L  *  Y  A  L  P  Q  A  Y  T  N  Y  L  S  T  C  V  F  L  V  L  P  F  L  Y  H  D  S  E  S  D  L  Q  I  L  S  H  L  R  K  L  T  K  *  S  S  K  R  N  V  V  L  E  I  S  F  F  N  *  G  T  *  C  L  S  H  N  F  I  W  I  R  L  G  K  Y  R  V  S  *  P  Q  *  S  Y  L  S  T  S  K  I  F  E  Q  E  D  G  H  I  F  A  P  V  R  N  V  L  C  R  L  S  H  *  T  A  C  P  K  *  C  L  S  V  Q  F  L  N  P  Q  S  N  R  V  S  P  F  L  V  Q  G  V  L  L  S  A  L  T  Y  I  *  D  F  F  F  L  F  P  N  D  N  R  D  H  R  E  A  K  G  S  Y  P  K  P  L  S  F  G  G  A  I  P  C  K  N  C  N  R  W  L  R :   S  I  Y  T  L  H  R  C  A  I  L  V  V  Y  H  Q  P  W  P  C  *  W  Q  E  V  V  I  F  Y  Y  Q  S  L  K  L  N  W  L  L  N  P  *  T  S  I  V  L  L  L  S  L  Q  F  Q  L  *  *  L  I  *  </second_frame>
            <third_frame>   K  K  L  R  K  A  F  N  S  R  L  P  V  G  T  *  G  S  S  Y  N  M  L  Y  L  R  H  I  L  T  T  F  P  H  V  C  F  L  F  F  H  F  F  T  M  I  Q  K  V  I  F  K  Y  S  H  T  Y  G  N  *  Q  N  E  V  L  R  E  M  W  Y  W  K  Y  L  F  L  T  K  E  H  N  V  S  P  T  I  L  S  G  S  D  *  G  N  I  V  F  L  S  L  S  K  V  I  C  L  L  A  K  F  L  N  K  K  M  V  I  Y  L  L  Q  *  E  M  C  C  A  G  *  V  I  E  L  H  V  Q  S  N  A  Y  L  F  N  S  *  T  L  N  L  I  V  C  P  H  F  W  Y  K  E  Y  C  *  V  H  *  L  I  F  K  I  F  F  F  C  S  L  M  T  I  G  T  T  G  R  P  K  G  V  T  L  S  H  S  A  L  V  V  Q  S  L  A  K  I  A  I  V  G  Y   : G  L  F  T  H  C  T  A  V  P  Y  W  W  Y  I  I  S  P  G  H  A  N  G  R  R  S  S  Y  F  T  T  K  V  *  S  *  I  G  C  *  I  H  R  P  A  *  C  Y  F  S  H  Y  S  S  S  Y  D  D  *  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10478" stop="10425"/>
                    <exon start="10313" stop="10134"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATQLWWCNPLQKLQSLVTVYLHTAPLCHIGGISSALAMLMAGGRHILLPKFEAKLAVESIDQHSVTSLITVPAMMTDL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10554" stop="10425"/>
                    <exon start="10313" stop="10213"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIFKIFFFCSLMTIGTTGRPKGVTLSHSALVVQSLAKIAIVGYGLFTHCTAVPYWWYIISPGHANGRRSSYFTTKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10419" e_stop="10414"/>
            <exon e_start="10313" e_stop="10120"/>
            <exon e_start="9783" e_stop="9656"/>
            <exon e_start="9360" e_stop="8981"/>
            <exon e_start="8765" e_stop="8740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.478" acc_prob="0.989" e_score="0.995"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.978" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10419" e_stop="10414" e_length="6"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.998">
            <gDNA_intron_boundary i_start="10413" i_stop="10314" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="10313" e_stop="10120" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.478" acc_prob="0.989">
            <gDNA_intron_boundary i_start="10119" i_stop="9784" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9783" e_stop="9656" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9655" i_stop="9361" i_length="295"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="9360" e_stop="8981" e_length="380"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.978">
            <gDNA_intron_boundary i_start="8980" i_stop="8766" i_length="215"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8765" e_stop="8740" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10419" stop="10414"/>
              <exon start="10313" stop="10120"/>
              <exon start="9783" stop="9656"/>
              <exon start="9360" stop="8981"/>
              <exon start="8765" stop="8740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317392" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGAT : GTCTATTTACACACTGCACCGCTGTGCCATATTGGTGGTATATCATCAGCCCTGGCCATGCTAATGGCAGGAGGTCGTCATATTTTACTACCAAAGTTTGAAGCTAAATTGGCTGTTGAATCCATAGACCAGCATAGTGTTACTTCTCTCATTACAGTTCCAGCTATGATGACTGATCTAATCTCTTTTTATAA : GACAAAGCACATATCTGTAGGGTCCAAATCTGTGAAGAAGGTTCTTAATGGAGCTGGGGGTCTTTCATCTAGTCTTATCAAAAATGTGATTGAGATATTCCCGAGGGCTAAACTTCTTTCAGCTTACG : GAATGACCGAGGCGTGTTCTTCTCTGACTTTCATGACTCTTTATGACCCGGCGAGAGAGAGTTGTATCCAGCATTCTTATGCCAACAGCTCCAATTTGGCACATAAACCAGATGGTATCTGTGTTGGAAAGCCTGCTCCACATATTGAAATAAGGATTGCTGGGGATGATTCGTCTTGTATAGGGAGGATTTTGACACGAGGTCCCCATTTAATGCTTGGATACTGGGATCAAATGCCAAGCAATAATTCTTCTCCAGTTGATGAATGTTGGCTTGACACTGGTGATATAGGGCATATAGATGATTGTGGAAATATCTGGCTCGTTGGGCGCTTGAAGGGCCGAATAAAGAGTGGGGGAGAAAATGTTTATCCTGAAGAG : GTGGAAGCTGTCTTATTGCAGCATCC</gDNA_template>
            <first_frame> D  D  :  V  Y  L  H  T  A  P  L  C  H  I  G  G  I  S  S  A  L  A  M  L  M  A  G  G  R  H  I  L  L  P  K  F  E  A  K  L  A  V  E  S  I  D  Q  H  S  V  T  S  L  I  T  V  P  A  M  M  T  D  L  I  S  F  Y  K :   T  K  H  I  S  V  G  S  K  S  V  K  K  V  L  N  G  A  G  G  L  S  S  S  L  I  K  N  V  I  E  I  F  P  R  A  K  L  L  S  A  Y   : G  M  T  E  A  C  S  S  L  T  F  M  T  L  Y  D  P  A  R  E  S  C  I  Q  H  S  Y  A  N  S  S  N  L  A  H  K  P  D  G  I  C  V  G  K  P  A  P  H  I  E  I  R  I  A  G  D  D  S  S  C  I  G  R  I  L  T  R  G  P  H  L  M  L  G  Y  W  D  Q  M  P  S  N  N  S  S  P  V  D  E  C  W  L  D  T  G  D  I  G  H  I  D  D  C  G  N  I  W  L  V  G  R  L  K  G  R  I  K  S  G  G  E  N  V  Y  P  E  E  :  V  E  A  V  L  L  Q  H   </first_frame>
            <second_frame>  M  M :   S  I  Y  T  L  H  R  C  A  I  L  V  V  Y  H  Q  P  W  P  C  *  W  Q  E  V  V  I  F  Y  Y  Q  S  L  K  L  N  W  L  L  N  P  *  T  S  I  V  L  L  L  S  L  Q  F  Q  L  *  *  L  I  *  S  L  F  I   : R  Q  S  T  Y  L  *  G  P  N  L  *  R  R  F  L  M  E  L  G  V  F  H  L  V  L  S  K  M  *  L  R  Y  S  R  G  L  N  F  F  Q  L  T  :  E  *  P  R  R  V  L  L  *  L  S  *  L  F  M  T  R  R  E  R  V  V  S  S  I  L  M  P  T  A  P  I  W  H  I  N  Q  M  V  S  V  L  E  S  L  L  H  I  L  K  *  G  L  L  G  M  I  R  L  V  *  G  G  F  *  H  E  V  P  I  *  C  L  D  T  G  I  K  C  Q  A  I  I  L  L  Q  L  M  N  V  G  L  T  L  V  I  *  G  I  *  M  I  V  E  I  S  G  S  L  G  A  *  R  A  E  *  R  V  G  E  K  M  F  I  L  K  R :   W  K  L  S  Y  C  S  I  </second_frame>
            <third_frame>   *   : C  L  F  T  H  C  T  A  V  P  Y  W  W  Y  I  I  S  P  G  H  A  N  G  R  R  S  S  Y  F  T  T  K  V  *  S  *  I  G  C  *  I  H  R  P  A  *  C  Y  F  S  H  Y  S  S  S  Y  D  D  *  S  N  L  F  L  *  :  D  K  A  H  I  C  R  V  Q  I  C  E  E  G  S  *  W  S  W  G  S  F  I  *  S  Y  Q  K  C  D  *  D  I  P  E  G  *  T  S  F  S  L  R :   N  D  R  G  V  F  F  S  D  F  H  D  S  L  *  P  G  E  R  E  L  Y  P  A  F  L  C  Q  Q  L  Q  F  G  T  *  T  R  W  Y  L  C  W  K  A  C  S  T  Y  *  N  K  D  C  W  G  *  F  V  L  Y  R  E  D  F  D  T  R  S  P  F  N  A  W  I  L  G  S  N  A  K  Q  *  F  F  S  S  *  *  M  L  A  *  H  W  *  Y  R  A  Y  R  *  L  W  K  Y  L  A  R  W  A  L  E  G  P  N  K  E  W  G  R  K  C  L  S  *  R   : G  G  S  C  L  I  A  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10419" stop="10414"/>
                    <exon start="10313" stop="10120"/>
                    <exon start="9783" stop="9656"/>
                    <exon start="9360" stop="8981"/>
                    <exon start="8765" stop="8742"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDVYLHTAPLCHIGGISSALAMLMAGGRHILLPKFEAKLAVESIDQHSVTSLITVPAMMTDLISFYKTKHISVGSKSVKKVLNGAGGLSSSLIKNVIEIFPRAKLLSAYGMTEACSSLTFMTLYDPARESCIQHSYANSSNLAHKPDGICVGKPAPHIEIRIAGDDSSCIGRILTRGPHLMLGYWDQMPSNNSSPVDECWLDTGDIGHIDDCGNIWLVGRLKGRIKSGGENVYPEEVEAVLLQH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="18240" PGL_stop="19084"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18240" e_stop="18994"/>
            <exon e_start="19047" e_stop="19084"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.242" e_score="0.982"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="18240" e_stop="18994" e_length="755"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.242">
            <gDNA_intron_boundary i_start="18995" i_stop="19046" i_length="52"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="19047" e_stop="19084" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18240" stop="18593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18242" stop="18893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18519" stop="18994"/>
              <exon start="19047" stop="19084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCTGCTTCTCTTAACTTTTTTTTTTTTTTTTCAATTCAAAATTTTATAATGAGGCAAAATTTTCTAGTTGTTGTTCTCACATTCATCGTCGTAGTATTATCGTCGTCTCGATCCAATTGCAGAGAGCTTCGTCCGGCGGAGCACGGATTGGCGACGACGGAGAATCAAAACTCAGATTCCAGTACTACAAACGATGAAATTCCGGAGATGATGTCGTTCTTCGGCGGTAATGGCGGCCGGCGGGATACTAAGCCGCCGGTAGCTAAGCCGATGGCGGAGAACGTGACGTGGATCGGCGGCGAGAGAGGAGGAATATCAGTTCATCACAACAGTAGAGATCATGTGAGGGATGTGTTGCTGATTTCCAGTTTGGTTTGTGGAGCTACCGGCGTCGTTTTGCTTGCCGTTTCAGTGTTTGTTTGTGTCGTTTTGAGGTTTCGGAAGGAGAAATCGGTGGAAAATGGAAAAGAAACGACGCCGTTGGGTACGCCAGTAGATGACGTTGTTCTCGCTCAGAAAGGAACTTAACTATCCTGCTTCGAAAATTACTCGAATGGTAAACATTTTTCACCTATAATTAATTATTACGAATTCGAGTCACTATCGAGCAAAGAGATAAAAAGCTCGCAGGGAAGAGATAAAAAAAACTTACAGTGGTCCATTTTCAATGTTTTTGTAGCACCTTTTTAATATTCTTCTTTCTTTTTGTTATTCTGTATGTATAGCCGGAGTATATATTTATCATTTTTTTT : GTAATAAAAATGGTAGGCAATCTATCATAGATTAAAAA</gDNA_template>
            <first_frame> S  S  A  S  L  N  F  F  F  F  F  S  I  Q  N  F  I  M  R  Q  N  F  L  V  V  V  L  T  F  I  V  V  V  L  S  S  S  R  S  N  C  R  E  L  R  P  A  E  H  G  L  A  T  T  E  N  Q  N  S  D  S  S  T  T  N  D  E  I  P  E  M  M  S  F  F  G  G  N  G  G  R  R  D  T  K  P  P  V  A  K  P  M  A  E  N  V  T  W  I  G  G  E  R  G  G  I  S  V  H  H  N  S  R  D  H  V  R  D  V  L  L  I  S  S  L  V  C  G  A  T  G  V  V  L  L  A  V  S  V  F  V  C  V  V  L  R  F  R  K  E  K  S  V  E  N  G  K  E  T  T  P  L  G  T  P  V  D  D  V  V  L  A  Q  K  G  T  *  L  S  C  F  E  N  Y  S  N  G  K  H  F  S  P  I  I  N  Y  Y  E  F  E  S  L  S  S  K  E  I  K  S  S  Q  G  R  D  K  K  N  L  Q  W  S  I  F  N  V  F  V  A  P  F  *  Y  S  S  F  F  L  L  F  C  M  Y  S  R  S  I  Y  L  S  F  F  L :   *  *  K  W  *  A  I  Y  H  R  L  K  </first_frame>
            <second_frame>  H  L  L  L  L  T  F  F  F  F  F  Q  F  K  I  L  *  *  G  K  I  F  *  L  L  F  S  H  S  S  S  *  Y  Y  R  R  L  D  P  I  A  E  S  F  V  R  R  S  T  D  W  R  R  R  R  I  K  T  Q  I  P  V  L  Q  T  M  K  F  R  R  *  C  R  S  S  A  V  M  A  A  G  G  I  L  S  R  R  *  L  S  R  W  R  R  T  *  R  G  S  A  A  R  E  E  E  Y  Q  F  I  T  T  V  E  I  M  *  G  M  C  C  *  F  P  V  W  F  V  E  L  P  A  S  F  C  L  P  F  Q  C  L  F  V  S  F  *  G  F  G  R  R  N  R  W  K  M  E  K  K  R  R  R  W  V  R  Q  *  M  T  L  F  S  L  R  K  E  L  N  Y  P  A  S  K  I  T  R  M  V  N  I  F  H  L  *  L  I  I  T  N  S  S  H  Y  R  A  K  R  *  K  A  R  R  E  E  I  K  K  T  Y  S  G  P  F  S  M  F  L  *  H  L  F  N  I  L  L  S  F  C  Y  S  V  C  I  A  G  V  Y  I  Y  H  F  F   : C  N  K  N  G  R  Q  S  I  I  D  *  K </second_frame>
            <third_frame>   I  C  F  S  *  L  F  F  F  F  F  N  S  K  F  Y  N  E  A  K  F  S  S  C  C  S  H  I  H  R  R  S  I  I  V  V  S  I  Q  L  Q  R  A  S  S  G  G  A  R  I  G  D  D  G  E  S  K  L  R  F  Q  Y  Y  K  R  *  N  S  G  D  D  V  V  L  R  R  *  W  R  P  A  G  Y  *  A  A  G  S  *  A  D  G  G  E  R  D  V  D  R  R  R  E  R  R  N  I  S  S  S  Q  Q  *  R  S  C  E  G  C  V  A  D  F  Q  F  G  L  W  S  Y  R  R  R  F  A  C  R  F  S  V  C  L  C  R  F  E  V  S  E  G  E  I  G  G  K  W  K  R  N  D  A  V  G  Y  A  S  R  *  R  C  S  R  S  E  R  N  L  T  I  L  L  R  K  L  L  E  W  *  T  F  F  T  Y  N  *  L  L  R  I  R  V  T  I  E  Q  R  D  K  K  L  A  G  K  R  *  K  K  L  T  V  V  H  F  Q  C  F  C  S  T  F  L  I  F  F  F  L  F  V  I  L  Y  V  *  P  E  Y  I  F  I  I  F  F  :  V  I  K  M  V  G  N  L  S  *  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18240" stop="18770"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSASLNFFFFFSIQNFIMRQNFLVVVLTFIVVVLSSSRSNCRELRPAEHGLATTENQNSDSSTTNDEIPEMMSFFGGNGGRRDTKPPVAKPMAENVTWIGGERGGISVHHNSRDHVRDVLLISSLVCGATGVVLLAVSVFVCVVLRFRKEKSVENGKETTPLGTPVDDVVLAQKGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18240" e_stop="19000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="18240" e_stop="19000" e_length="761"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18240" stop="18593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18242" stop="18893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18519" stop="19000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCTGCTTCTCTTAACTTTTTTTTTTTTTTTTCAATTCAAAATTTTATAATGAGGCAAAATTTTCTAGTTGTTGTTCTCACATTCATCGTCGTAGTATTATCGTCGTCTCGATCCAATTGCAGAGAGCTTCGTCCGGCGGAGCACGGATTGGCGACGACGGAGAATCAAAACTCAGATTCCAGTACTACAAACGATGAAATTCCGGAGATGATGTCGTTCTTCGGCGGTAATGGCGGCCGGCGGGATACTAAGCCGCCGGTAGCTAAGCCGATGGCGGAGAACGTGACGTGGATCGGCGGCGAGAGAGGAGGAATATCAGTTCATCACAACAGTAGAGATCATGTGAGGGATGTGTTGCTGATTTCCAGTTTGGTTTGTGGAGCTACCGGCGTCGTTTTGCTTGCCGTTTCAGTGTTTGTTTGTGTCGTTTTGAGGTTTCGGAAGGAGAAATCGGTGGAAAATGGAAAAGAAACGACGCCGTTGGGTACGCCAGTAGATGACGTTGTTCTCGCTCAGAAAGGAACTTAACTATCCTGCTTCGAAAATTACTCGAATGGTAAACATTTTTCACCTATAATTAATTATTACGAATTCGAGTCACTATCGAGCAAAGAGATAAAAAGCTCGCAGGGAAGAGATAAAAAAAACTTACAGTGGTCCATTTTCAATGTTTTTGTAGCACCTTTTTAATATTCTTCTTTCTTTTTGTTATTCTGTATGTATAGCCGGAGTATATATTTATCATTTTTTTTATCTTT</gDNA_template>
            <first_frame> S  S  A  S  L  N  F  F  F  F  F  S  I  Q  N  F  I  M  R  Q  N  F  L  V  V  V  L  T  F  I  V  V  V  L  S  S  S  R  S  N  C  R  E  L  R  P  A  E  H  G  L  A  T  T  E  N  Q  N  S  D  S  S  T  T  N  D  E  I  P  E  M  M  S  F  F  G  G  N  G  G  R  R  D  T  K  P  P  V  A  K  P  M  A  E  N  V  T  W  I  G  G  E  R  G  G  I  S  V  H  H  N  S  R  D  H  V  R  D  V  L  L  I  S  S  L  V  C  G  A  T  G  V  V  L  L  A  V  S  V  F  V  C  V  V  L  R  F  R  K  E  K  S  V  E  N  G  K  E  T  T  P  L  G  T  P  V  D  D  V  V  L  A  Q  K  G  T  *  L  S  C  F  E  N  Y  S  N  G  K  H  F  S  P  I  I  N  Y  Y  E  F  E  S  L  S  S  K  E  I  K  S  S  Q  G  R  D  K  K  N  L  Q  W  S  I  F  N  V  F  V  A  P  F  *  Y  S  S  F  F  L  L  F  C  M  Y  S  R  S  I  Y  L  S  F  F  L  S   </first_frame>
            <second_frame>  H  L  L  L  L  T  F  F  F  F  F  Q  F  K  I  L  *  *  G  K  I  F  *  L  L  F  S  H  S  S  S  *  Y  Y  R  R  L  D  P  I  A  E  S  F  V  R  R  S  T  D  W  R  R  R  R  I  K  T  Q  I  P  V  L  Q  T  M  K  F  R  R  *  C  R  S  S  A  V  M  A  A  G  G  I  L  S  R  R  *  L  S  R  W  R  R  T  *  R  G  S  A  A  R  E  E  E  Y  Q  F  I  T  T  V  E  I  M  *  G  M  C  C  *  F  P  V  W  F  V  E  L  P  A  S  F  C  L  P  F  Q  C  L  F  V  S  F  *  G  F  G  R  R  N  R  W  K  M  E  K  K  R  R  R  W  V  R  Q  *  M  T  L  F  S  L  R  K  E  L  N  Y  P  A  S  K  I  T  R  M  V  N  I  F  H  L  *  L  I  I  T  N  S  S  H  Y  R  A  K  R  *  K  A  R  R  E  E  I  K  K  T  Y  S  G  P  F  S  M  F  L  *  H  L  F  N  I  L  L  S  F  C  Y  S  V  C  I  A  G  V  Y  I  Y  H  F  F  Y  L  </second_frame>
            <third_frame>   I  C  F  S  *  L  F  F  F  F  F  N  S  K  F  Y  N  E  A  K  F  S  S  C  C  S  H  I  H  R  R  S  I  I  V  V  S  I  Q  L  Q  R  A  S  S  G  G  A  R  I  G  D  D  G  E  S  K  L  R  F  Q  Y  Y  K  R  *  N  S  G  D  D  V  V  L  R  R  *  W  R  P  A  G  Y  *  A  A  G  S  *  A  D  G  G  E  R  D  V  D  R  R  R  E  R  R  N  I  S  S  S  Q  Q  *  R  S  C  E  G  C  V  A  D  F  Q  F  G  L  W  S  Y  R  R  R  F  A  C  R  F  S  V  C  L  C  R  F  E  V  S  E  G  E  I  G  G  K  W  K  R  N  D  A  V  G  Y  A  S  R  *  R  C  S  R  S  E  R  N  L  T  I  L  L  R  K  L  L  E  W  *  T  F  F  T  Y  N  *  L  L  R  I  R  V  T  I  E  Q  R  D  K  K  L  A  G  K  R  *  K  K  L  T  V  V  H  F  Q  C  F  C  S  T  F  L  I  F  F  F  L  F  V  I  L  Y  V  *  P  E  Y  I  F  I  I  F  F  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18240" stop="18770"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSASLNFFFFFSIQNFIMRQNFLVVVLTFIVVVLSSSRSNCRELRPAEHGLATTENQNSDSSTTNDEIPEMMSFFGGNGGRRDTKPPVAKPMAENVTWIGGERGGISVHHNSRDHVRDVLLISSLVCGATGVVLLAVSVFVCVVLRFRKEKSVENGKETTPLGTPVDDVVLAQKGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="27966" PGL_stop="32784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27966" e_stop="28271"/>
            <exon e_start="29534" e_stop="29766"/>
            <exon e_start="30517" e_stop="30903"/>
            <exon e_start="32708" e_stop="32784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.888" e_score="0.895"/>
          <exon-intron don_prob="0.929" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.782" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="27966" e_stop="28271" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.888">
            <gDNA_intron_boundary i_start="28272" i_stop="29533" i_length="1262"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29534" e_stop="29766" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.929" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29767" i_stop="30516" i_length="750"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30517" e_stop="30903" e_length="387"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.782">
            <gDNA_intron_boundary i_start="30904" i_stop="32707" i_length="1804"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32708" e_stop="32784" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27966" stop="28271"/>
              <exon start="29534" stop="29766"/>
              <exon start="30517" stop="30670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28245" stop="28271"/>
              <exon start="29534" stop="29766"/>
              <exon start="30517" stop="30831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29542" stop="29766"/>
              <exon start="30517" stop="30903"/>
              <exon start="32708" stop="32784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29542" stop="29766"/>
              <exon start="30517" stop="30713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333675" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCCATTTGGCGCCCACTGCCTATTTACTTAAACCCTGTTTGTCTTAAGCTCACATTAACTTGCAAACGCAGGCGGGCCCTTAAATTTTCCAGTTCCCCAAATTTTCTTCTTCTCTCCTTTGTATTCTCTCGAGATTTCTCTCTCTTCTCTTTGGGTTTTAAATTTTAAAAATTGAAATCCTATCATTTTTTGAATTTTTGAAAAAGATTCATGTTAATGGCAACTCTTCTAGCTTCTTCTTCATGGGTTTAACCTATTTTTAATGGGGTTTTGAGATTCTAGATCAGCGTCAGCTTAAAACCTAG : GGATTAACAGCATTACAAGAGCAATGACAACTGTAAGTCCTTATTTTGATGACTTGCGATGTCAACCTGAGGTCATTCATCCTCCACAAAACGAAGACTGCATGGACATTGGTGAACATATGAATGAGCCTGCTCAACATACAGCAAAACCTAATGTGACTGTTTCCAGTAGTGTTCGTGAATTGTTGGAATGCCCTGTATGCTTAAATGCTATGTATCCACCCATCCATCAG : TGTTCCAACGGTCACACACTGTGTTCTGGTTGCAAACCTAGGGTTCACAATCGCTGTCCAACATGTCGGCATGAACTTGGTAATATCCGATGTCTTGCGTTGGAGAAGGTTGCTGCATCTCTTGAACTCCCATGTAAATACCAGAACTTTGGATGCATAGGCATCATTCCTTACTACAGCAAGCTAAAGCATGAGTCCCAATGCTCCTTCAGACCCTATAATTGTCCCTATGCGGGATCAGACTGCACTGTCATCGGTGACATACCATATATAGTTGCCCATCTAAAAGATGATCACAAAGTTGACATGCACATGGGCAGTACTTTCAACCATCGCTATGTGAAGTCAAAACCCCATGAAGTGGAAAATGCTACATGGATGCTCACA : GTTTTCAGTTGCTTTGGTCAGTACTTCTGTTTACACTTCGAAGCATTTCAACTTGGAATGGCACCAGTTTATATTGC</gDNA_template>
            <first_frame> P  H  L  A  P  T  A  Y  L  L  K  P  C  L  S  *  A  H  I  N  L  Q  T  Q  A  G  P  *  I  F  Q  F  P  K  F  S  S  S  L  L  C  I  L  S  R  F  L  S  L  L  F  G  F  *  I  L  K  I  E  I  L  S  F  F  E  F  L  K  K  I  H  V  N  G  N  S  S  S  F  F  F  M  G  L  T  Y  F  *  W  G  F  E  I  L  D  Q  R  Q  L  K  T  *  :  G  L  T  A  L  Q  E  Q  *  Q  L  *  V  L  I  L  M  T  C  D  V  N  L  R  S  F  I  L  H  K  T  K  T  A  W  T  L  V  N  I  *  M  S  L  L  N  I  Q  Q  N  L  M  *  L  F  P  V  V  F  V  N  C  W  N  A  L  Y  A  *  M  L  C  I  H  P  S  I  S :   V  P  T  V  T  H  C  V  L  V  A  N  L  G  F  T  I  A  V  Q  H  V  G  M  N  L  V  I  S  D  V  L  R  W  R  R  L  L  H  L  L  N  S  H  V  N  T  R  T  L  D  A  *  A  S  F  L  T  T  A  S  *  S  M  S  P  N  A  P  S  D  P  I  I  V  P  M  R  D  Q  T  A  L  S  S  V  T  Y  H  I  *  L  P  I  *  K  M  I  T  K  L  T  C  T  W  A  V  L  S  T  I  A  M  *  S  Q  N  P  M  K  W  K  M  L  H  G  C  S  Q :   F  S  V  A  L  V  S  T  S  V  Y  T  S  K  H  F  N  L  E  W  H  Q  F  I  L  </first_frame>
            <second_frame>  P  I  W  R  P  L  P  I  Y  L  N  P  V  C  L  K  L  T  L  T  C  K  R  R  R  A  L  K  F  S  S  S  P  N  F  L  L  L  S  F  V  F  S  R  D  F  S  L  F  S  L  G  F  K  F  *  K  L  K  S  Y  H  F  L  N  F  *  K  R  F  M  L  M  A  T  L  L  A  S  S  S  W  V  *  P  I  F  N  G  V  L  R  F  *  I  S  V  S  L  K  P  R :   D  *  Q  H  Y  K  S  N  D  N  C  K  S  L  F  *  *  L  A  M  S  T  *  G  H  S  S  S  T  K  R  R  L  H  G  H  W  *  T  Y  E  *  A  C  S  T  Y  S  K  T  *  C  D  C  F  Q  *  C  S  *  I  V  G  M  P  C  M  L  K  C  Y  V  S  T  H  P  S   : V  F  Q  R  S  H  T  V  F  W  L  Q  T  *  G  S  Q  S  L  S  N  M  S  A  *  T  W  *  Y  P  M  S  C  V  G  E  G  C  C  I  S  *  T  P  M  *  I  P  E  L  W  M  H  R  H  H  S  L  L  Q  Q  A  K  A  *  V  P  M  L  L  Q  T  L  *  L  S  L  C  G  I  R  L  H  C  H  R  *  H  T  I  Y  S  C  P  S  K  R  *  S  Q  S  *  H  A  H  G  Q  Y  F  Q  P  S  L  C  E  V  K  T  P  *  S  G  K  C  Y  M  D  A  H   : S  F  Q  L  L  W  S  V  L  L  F  T  L  R  S  I  S  T  W  N  G  T  S  L  Y  C </second_frame>
            <third_frame>   P  F  G  A  H  C  L  F  T  *  T  L  F  V  L  S  S  H  *  L  A  N  A  G  G  P  L  N  F  P  V  P  Q  I  F  F  F  S  P  L  Y  S  L  E  I  S  L  S  S  L  W  V  L  N  F  K  N  *  N  P  I  I  F  *  I  F  E  K  D  S  C  *  W  Q  L  F  *  L  L  L  H  G  F  N  L  F  L  M  G  F  *  D  S  R  S  A  S  A  *  N  L   : G  I  N  S  I  T  R  A  M  T  T  V  S  P  Y  F  D  D  L  R  C  Q  P  E  V  I  H  P  P  Q  N  E  D  C  M  D  I  G  E  H  M  N  E  P  A  Q  H  T  A  K  P  N  V  T  V  S  S  S  V  R  E  L  L  E  C  P  V  C  L  N  A  M  Y  P  P  I  H  Q  :  C  S  N  G  H  T  L  C  S  G  C  K  P  R  V  H  N  R  C  P  T  C  R  H  E  L  G  N  I  R  C  L  A  L  E  K  V  A  A  S  L  E  L  P  C  K  Y  Q  N  F  G  C  I  G  I  I  P  Y  Y  S  K  L  K  H  E  S  Q  C  S  F  R  P  Y  N  C  P  Y  A  G  S  D  C  T  V  I  G  D  I  P  Y  I  V  A  H  L  K  D  D  H  K  V  D  M  H  M  G  S  T  F  N  H  R  Y  V  K  S  K  P  H  E  V  E  N  A  T  W  M  L  T  :  V  F  S  C  F  G  Q  Y  F  C  L  H  F  E  A  F  Q  L  G  M  A  P  V  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28265" stop="28271"/>
                    <exon start="29534" stop="29766"/>
                    <exon start="30517" stop="30903"/>
                    <exon start="32708" stop="32782"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLGINSITRAMTTVSPYFDDLRCQPEVIHPPQNEDCMDIGEHMNEPAQHTAKPNVTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQNFGCIGIIPYYSKLKHESQCSFRPYNCPYAGSDCTVIGDIPYIVAHLKDDHKVDMHMGSTFNHRYVKSKPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="32873" PGL_stop="33334"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32873" e_stop="33334"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="32873" e_stop="33334" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32873" stop="33334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217410" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGGGGTACCTCGAAGCATCAGGGACAGTTACCGTAAGGTTCGAGACAGTTTTGATGGCCTCATCATTCAGCGTAATATGGCGCTCTTCTTTTCTGGTGGAGACCGGAAAGAACTGAAGCTCAGAGTTACTGGTAGGATATGGAAAGAACAATGACGTCCATTGTAGCAGTACACTTGTAGTTGTAGCAGTTGATGTACTGTTTTAGTCCAAGAAGTAGGTTTTTATTTATCTAGCAATCAGTTAAAAGTCTTCTGATCAATGTATTTTCTTGAACAAGAAGCAACCTCTCTTTGCTTTGTCCATGATTAAAATACATTAGTGAGAAGGCCTACGTCAGTTTGTAGAATGTGTCTTGCTGTAGGTTGTGTATTACTTACTGTCACAGTAAAAAATCTGTATCCATGAAAGTTCTCTTTATTGAAATTCAATAAGTTAGTTTAACCAAAAGGGGACAAGTAA</gDNA_template>
            <first_frame> Q  G  V  P  R  S  I  R  D  S  Y  R  K  V  R  D  S  F  D  G  L  I  I  Q  R  N  M  A  L  F  F  S  G  G  D  R  K  E  L  K  L  R  V  T  G  R  I  W  K  E  Q  *  R  P  L  *  Q  Y  T  C  S  C  S  S  *  C  T  V  L  V  Q  E  V  G  F  Y  L  S  S  N  Q  L  K  V  F  *  S  M  Y  F  L  E  Q  E  A  T  S  L  C  F  V  H  D  *  N  T  L  V  R  R  P  T  S  V  C  R  M  C  L  A  V  G  C  V  L  L  T  V  T  V  K  N  L  Y  P  *  K  F  S  L  L  K  F  N  K  L  V  *  P  K  G  D  K  * </first_frame>
            <second_frame>  K  G  Y  L  E  A  S  G  T  V  T  V  R  F  E  T  V  L  M  A  S  S  F  S  V  I  W  R  S  S  F  L  V  E  T  G  K  N  *  S  S  E  L  L  V  G  Y  G  K  N  N  D  V  H  C  S  S  T  L  V  V  V  A  V  D  V  L  F  *  S  K  K  *  V  F  I  Y  L  A  I  S  *  K  S  S  D  Q  C  I  F  L  N  K  K  Q  P  L  F  A  L  S  M  I  K  I  H  *  *  E  G  L  R  Q  F  V  E  C  V  L  L  *  V  V  Y  Y  L  L  S  Q  *  K  I  C  I  H  E  S  S  L  Y  *  N  S  I  S  *  F  N  Q  K  G  T  S   </second_frame>
            <third_frame>   R  G  T  S  K  H  Q  G  Q  L  P  *  G  S  R  Q  F  *  W  P  H  H  S  A  *  Y  G  A  L  L  F  W  W  R  P  E  R  T  E  A  Q  S  Y  W  *  D  M  E  R  T  M  T  S  I  V  A  V  H  L  *  L  *  Q  L  M  Y  C  F  S  P  R  S  R  F  L  F  I  *  Q  S  V  K  S  L  L  I  N  V  F  S  *  T  R  S  N  L  S  L  L  C  P  *  L  K  Y  I  S  E  K  A  Y  V  S  L  *  N  V  S  C  C  R  L  C  I  T  Y  C  H  S  K  K  S  V  S  M  K  V  L  F  I  E  I  Q  *  V  S  L  T  K  R  G  Q  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0162I09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="34144" PGL_stop="40192"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34258" e_stop="34378"/>
            <exon e_start="35097" e_stop="35160"/>
            <exon e_start="35912" e_stop="36057"/>
            <exon e_start="37955" e_stop="38062"/>
            <exon e_start="38153" e_stop="38317"/>
            <exon e_start="39553" e_stop="40192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.871" acc_prob="0.473" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34258" e_stop="34378" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.870">
            <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35097" e_stop="35160" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.856" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35912" e_stop="36057" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.871" acc_prob="0.473">
            <gDNA_intron_boundary i_start="36058" i_stop="37954" i_length="1897"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37955" e_stop="38062" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="38153" e_stop="38317" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38318" i_stop="39552" i_length="1235"/>
          </intron>
          <exon e_serial="6" e_score="0.977">
            <gDNA_exon_boundary e_start="39553" e_stop="40192" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34258" stop="34378"/>
              <exon start="35097" stop="35160"/>
              <exon start="35912" stop="36057"/>
              <exon start="37955" stop="38062"/>
              <exon start="38153" stop="38317"/>
              <exon start="39553" stop="40192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34259" stop="34378"/>
              <exon start="35097" stop="35160"/>
              <exon start="35912" stop="36057"/>
              <exon start="37955" stop="38062"/>
              <exon start="38153" stop="38317"/>
              <exon start="39553" stop="39687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34278" stop="34378"/>
              <exon start="35097" stop="35160"/>
              <exon start="35912" stop="36057"/>
              <exon start="37955" stop="38062"/>
              <exon start="38153" stop="38299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34297" stop="34378"/>
              <exon start="35097" stop="35160"/>
              <exon start="35912" stop="36057"/>
              <exon start="37955" stop="38062"/>
              <exon start="38153" stop="38317"/>
              <exon start="39553" stop="39591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34304" stop="34378"/>
              <exon start="35097" stop="35160"/>
              <exon start="35912" stop="36057"/>
              <exon start="37955" stop="38062"/>
              <exon start="38153" stop="38317"/>
              <exon start="39553" stop="39699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35125" stop="35160"/>
              <exon start="35912" stop="36057"/>
              <exon start="37955" stop="38062"/>
              <exon start="38153" stop="38317"/>
              <exon start="39553" stop="39782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35125" stop="35160"/>
              <exon start="35912" stop="36057"/>
              <exon start="37955" stop="38062"/>
              <exon start="38153" stop="38317"/>
              <exon start="39553" stop="39775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35125" stop="35160"/>
              <exon start="35912" stop="36057"/>
              <exon start="37955" stop="38062"/>
              <exon start="38153" stop="38317"/>
              <exon start="39553" stop="39582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35125" stop="35160"/>
              <exon start="35912" stop="36057"/>
              <exon start="37955" stop="38062"/>
              <exon start="38153" stop="38311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35970" stop="36057"/>
              <exon start="37955" stop="38062"/>
              <exon start="38153" stop="38317"/>
              <exon start="39553" stop="40009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37958" stop="38062"/>
              <exon start="38153" stop="38317"/>
              <exon start="39553" stop="40100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39631" stop="40066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39655" stop="40102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39687" stop="40104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228573" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG : GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG : ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG : TTGCAGGCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATG : GTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG : CCTTACTTGCATGAATCACGACATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAAACTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTAAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCCTTCAAAATGTTGTTCTAGTAAGTGTATGGAATATCGAGTCAGAAATTTGAGTAATAACGTTTGGCACTACGTTTTGTTAGTTTAAGAAGATAAGCGTGCAGCACTGTTGGTTGATGAATTCTAATTTTCCAAGGTCAATGCATTCTGTGTCAATATCTTGGTTATCTATAACCATATCCGCTG</gDNA_template>
            <first_frame> K  R  I  V  T  V  T  N  T  *  *  S  S  L  *  R  R  K  F  N  R  E  H  Q  N  *  S  C  L  L  V  F  V  Y  T  K  L  F  P  K   : G  L  L  L  W  R  F  C  G  K  Q  H  Y  D  V  L  A  S  L  S  F  R :   W  *  *  E  *  T  V  R  K  S  I  R  S  P  Q  R  V  F  I  A  C  S  W  N  V  C  P  W  H  C  N  N  K  Y  A  L  C  Y  A  Q  S  T  W  E  W  K  S  Y   : V  A  G  S  N  S  L  S  I  S  R  P  I  L  *  E  H  L  C  T  V  *  S  T  T  L  S  S  T  T  L  S  S  T  T  N   : G  S  H  S  A  N  G  N  S  T  S  G  C  S  F  A  I  R  C  D  R  R  T  C  F  C  *  C  K  T  V  S  W  H  L  E  A  S  T  I  S  R  E  S  *  V  R  K  E  T  S  E  S  *  E   : A  L  L  A  *  I  T  T  F  A  C  I  E  K  S  *  R  M  W  R  S  F  P  D  S  K  G  N  *  *  S  A  E  T  G  *  N  W  *  *  I  S  S  Q  H  *  S  R  V  W  K  R  Q  G  R  F  F  R  E  C  L  L  I  Y  A  I  S  R  T  L  W  T  I  V  C  C  Y  C  L  *  K  Q  Q  C  F  C  *  N  R  I  V  V  A  G  Q  N  Q  G  N  C  G  V  L  Y  V  Y  L  S  V  D  R  S  E  *  A  Y  S  F  E  S  Y  K  V  A  A  G  R  M  F  S  K  Y  H  L  S  E  L  V  C  R  H  S  F  L  S  F  R  N  C  L  V  I  P  S  K  C  C  S  S  K  C  M  E  Y  R  V  R  N  L  S  N  N  V  W  H  Y  V  L  L  V  *  E  D  K  R  A  A  L  L  V  D  E  F  *  F  S  K  V  N  A  F  C  V  N  I  L  V  I  Y  N  H  I  R   </first_frame>
            <second_frame>  K  E  *  *  Q  L  Q  T  R  S  K  A  L  S  R  E  G  N  S  T  E  N  T  K  I  K  A  A  Y  W  F  S  Y  T  R  S  S  S  R  K  :  V  C  Y  F  G  D  S  V  A  S  S  I  M  T  S  S  L  H  Y  H  S   : D  G  S  E  N  E  Q  S  E  N  Q  S  E  A  H  S  E  S  S  S  P  A  A  G  M  S  V  P  G  T  V  T  T  N  M  H  Y  V  M  P  N  Q  L  G  N  G  N  P  M  :  L  Q  A  Q  T  A  Y  P  Y  P  D  P  Y  Y  R  S  I  F  A  P  Y  D  P  Q  P  Y  P  P  Q  P  Y  P  A  Q  P  M  :  V  H  I  Q  L  M  G  I  Q  Q  A  G  V  P  L  P  S  D  A  I  D  E  P  V  F  V  N  A  K  Q  Y  H  G  I  L  R  R  R  Q  S  R  A  K  A  E  S  E  K  K  L  L  K  A  R  K  :  P  Y  L  H  E  S  R  H  L  H  A  L  K  R  A  R  G  C  G  G  R  F  L  T  A  K  E  T  D  N  Q  Q  K  Q  D  E  T  G  D  K  S  Q  V  N  I  N  L  E  S  G  K  D  K  V  A  S  S  E  N  A  S  *  S  M  Q  Y  Q  G  L  C  G  P  *  Y  V  V  T  V  C  R  N  S  S  A  F  V  K  I  E  L  W  *  L  G  K  I  R  V  I  V  V  F  C  M  F  I  *  V  *  I  D  R  N  R  P  T  R  L  R  A  T  K  W  P  L  G  V  C  S  L  N  T  I  S  L  S  L  F  V  D  I  L  S  C  P  F  V  I  A  L  *  F  L  Q  N  V  V  L  V  S  V  W  N  I  E  S  E  I  *  V  I  T  F  G  T  T  F  C  *  F  K  K  I  S  V  Q  H  C  W  L  M  N  S  N  F  P  R  S  M  H  S  V  S  I  S  W  L  S  I  T  I  S  A  </second_frame>
            <third_frame>   K  N  S  N  S  Y  K  H  V  V  K  L  S  L  E  K  E  I  Q  Q  R  T  P  K  L  K  L  L  I  G  F  R  I  H  E  A  L  P  E  R :   F  V  T  L  E  I  L  W  Q  A  A  L  *  R  P  R  F  I  I  I  Q  :  M  V  V  R  M  N  S  Q  K  I  N  Q  K  P  T  A  S  L  H  R  L  Q  L  E  C  L  S  L  A  L  *  Q  Q  I  C  T  M  L  C  P  I  N  L  G  M  E  I  L  C :   C  R  L  K  Q  L  I  H  I  Q  T  H  T  I  G  A  S  L  H  R  M  I  H  N  L  I  L  H  N  L  I  Q  H  N  Q  W :   F  T  F  S  *  W  E  F  N  K  R  V  F  L  C  H  Q  M  R  *  T  N  L  F  L  L  M  Q  N  S  I  M  A  S  *  G  V  D  N  L  A  R  K  L  S  Q  K  R  N  F  *  K  L  G  S :   L  T  C  M  N  H  D  I  C  M  H  *  K  E  L  E  D  V  E  V  V  S  *  Q  Q  R  K  L  I  I  S  R  N  R  M  K  L  V  I  N  L  K  S  T  L  I  S  S  L  E  K  T  R  S  L  L  Q  R  M  P  L  D  L  C  N  I  K  D  F  V  D  H  S  M  L  L  L  F  V  E  T  A  V  L  L  L  K  *  N  C  G  S  W  A  K  S  G  *  L  W  C  S  V  C  L  S  E  C  R  *  I  G  I  G  L  L  V  *  E  L  Q  S  G  R  W  A  Y  V  L  *  I  P  S  L  *  A  C  L  *  T  F  F  L  V  L  S  *  L  P  C  D  S  F  K  M  L  F  *  *  V  Y  G  I  S  S  Q  K  F  E  *  *  R  L  A  L  R  F  V  S  L  R  R  *  A  C  S  T  V  G  *  *  I  L  I  F  Q  G  Q  C  I  L  C  Q  Y  L  G  Y  L  *  P  Y  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34271" stop="34378"/>
                    <exon start="35097" stop="35160"/>
                    <exon start="35912" stop="36057"/>
                    <exon start="37955" stop="38062"/>
                    <exon start="38153" stop="38317"/>
                    <exon start="39553" stop="39738"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLQTRSKALSREGNSTENTKIKAAYWFSYTRSSSRKVCYFGDSVASSIMTSSLHYHSDGSENEQSENQSEAHSESSSPAAGMSVPGTVTTNMHYVMPNQLGNGNPMLQAQTAYPYPDPYYRSIFAPYDPQPYPPQPYPAQPMVHIQLMGIQQAGVPLPSDAIDEPVFVNAKQYHGILRRRQSRAKAESEKKLLKARKPYLHESRHLHALKRARGCGGRFLTAKETDNQQKQDETGDKSQVNINLESGKDKVASSENAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39894" stop="40094"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYSFESYKVAAGRMFSKYHLSELVCRHSFLSFRNCLVIPSKCCSSKCMEYRVRNLSNNVWHYVLLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35923" e_stop="37290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="35923" e_stop="37290" e_length="1368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35923" stop="36546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36487" stop="37072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36487" stop="36703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36698" stop="37290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327172" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATGGTATATTTGAAGCACCAATTAACTTCTAATGACCGATTTCTGAAAATCACTATTAAGTCCTGAATTGATATCTTCTGCTTGATAATTATTCTTGCTGATAGATGCAACCGCCTTCTTGTTCTTCCGATCAGATGTTATCATAGAACTGCTGTCGTGAATAAATTAGGGGTATTGTCAGAAGTCAAATAGGTTACAAATATCTGAAGAATTGATTGATTGTAATAGGTATGTAGATATATTGACGATGGTTCTGTGAATATTATCATTTTGCACTTGTTAATAGGCTTCTTTATTTTGGGAGATGAAGTGCACATGTTCATATTTGGCTATAATTAGAATGTGATATCGTTCTTCTCTTCATTAGCAGAGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTG</gDNA_template>
            <first_frame> N  E  Q  S  E  N  Q  S  E  A  H  S  E  S  S  S  P  A  A  G  M  S  V  P  G  T  V  T  T  N  M  H  Y  V  M  P  N  Q  L  G  N  G  N  P  M  V  Y  L  K  H  Q  L  T  S  N  D  R  F  L  K  I  T  I  K  S  *  I  D  I  F  C  L  I  I  I  L  A  D  R  C  N  R  L  L  V  L  P  I  R  C  Y  H  R  T  A  V  V  N  K  L  G  V  L  S  E  V  K  *  V  T  N  I  *  R  I  D  *  L  *  *  V  C  R  Y  I  D  D  G  S  V  N  I  I  I  L  H  L  L  I  G  F  F  I  L  G  D  E  V  H  M  F  I  F  G  Y  N  *  N  V  I  S  F  F  S  S  L  A  E  T  P  L  *  H  L  *  H  P  T  *  N  R  I  Y  F  L  P  K  *  L  V  V  Q  K  P  E  S  Q  V  D  H  K  Y  L  N  V  G  H  N  G  A  M  I  V  L  M  D  S  C  I  *  R  *  I  H  M  K  Q  N  I  L  F  *  I  Y  E  *  L  V  G  C  F  T  E  P  I  N  *  R  K  L  L  V  R  *  H  Y  *  I  H  W  G  R  S  D  Y  L  R  K  Q  *  V  N  M  N  L  R  K  G  Y  *  C  I  K  F  L  Y  Y  S  K  C  F  *  *  *  D  G  N  I  S  T  Y  R  L  S  C  C  T  P  G  G  Y  N  K  G  C  *  S  L  M  R  K  I  C  I  F  L  E  D  R  E  *  P  F  C  A  Y  C  F  *  L  V  D  D  F  L  *  I  G  V  R  S  *  N  H  *  *  E  H  S  V  V  R  R  N  T  C  T  L  S  S  V  C  L  Y  K  E  H  K  V  F  E  W  *  C  C  N  I  K  N  R  Y  F  M  T  S  R  Y  L  Q  S  I  I  V  G  F  V  N  H  N  *  R  D  L  G  T  E  S  D  F  H  F  G  L  V  F  W  Y  F  D  W  S  L  N  Q  V  W  L  G  *  T  Q  T  L  Q  L  *  S  L  I  S  V  L  G  N  I  L </first_frame>
            <second_frame>  M  N  S  Q  K  I  N  Q  K  P  T  A  S  L  H  R  L  Q  L  E  C  L  S  L  A  L  *  Q  Q  I  C  T  M  L  C  P  I  N  L  G  M  E  I  L  W  Y  I  *  S  T  N  *  L  L  M  T  D  F  *  K  S  L  L  S  P  E  L  I  S  S  A  *  *  L  F  L  L  I  D  A  T  A  F  L  F  F  R  S  D  V  I  I  E  L  L  S  *  I  N  *  G  Y  C  Q  K  S  N  R  L  Q  I  S  E  E  L  I  D  C  N  R  Y  V  D  I  L  T  M  V  L  *  I  L  S  F  C  T  C  *  *  A  S  L  F  W  E  M  K  C  T  C  S  Y  L  A  I  I  R  M  *  Y  R  S  S  L  H  *  Q  R  H  H  F  D  I  C  N  I  Q  H  E  T  A  Y  I  S  C  P  N  S  W  L  C  K  S  L  K  A  K  L  I  I  N  I  L  M  W  G  I  M  E  L  *  L  C  L  W  I  L  V  S  R  G  K  F  I  *  S  K  I  Y  Y  F  R  F  M  N  D  *  L  D  V  S  P  N  L  *  I  E  E  S  C  L  L  D  S  I  T  E  Y  I  G  V  V  Q  T  I  *  E  S  N  R  *  I  *  T  *  E  K  D  I  N  A  S  S  F  F  T  I  P  N  V  F  S  S  R  M  E  I  F  L  L  I  D  C  H  V  V  H  L  A  D  I  I  R  V  V  S  L  *  *  G  K  F  V  Y  F  L  K  I  G  N  D  L  F  V  L  I  A  F  D  *  L  M  T  F  S  R  *  E  L  E  V  R  T  T  N  K  N  I  Q  L  *  E  E  T  H  V  P  F  L  V  C  A  Y  T  K  S  I  K  F  L  N  G  D  V  V  T  L  R  I  D  I  S  *  L  L  D  I  Y  N  P  S  L  L  G  L  S  I  I  T  E  E  T  L  G  R  R  V  I  S  I  L  V  L  F  S  G  I  L  I  G  L  *  I  R  Y  G  W  V  R  H  K  H  F  N  Y  N  L  S  F  L  F  *  A  T  S   </second_frame>
            <third_frame>   *  T  V  R  K  S  I  R  S  P  Q  R  V  F  I  A  C  S  W  N  V  C  P  W  H  C  N  N  K  Y  A  L  C  Y  A  Q  S  T  W  E  W  K  S  Y  G  I  F  E  A  P  I  N  F  *  *  P  I  S  E  N  H  Y  *  V  L  N  *  Y  L  L  L  D  N  Y  S  C  *  *  M  Q  P  P  S  C  S  S  D  Q  M  L  S  *  N  C  C  R  E  *  I  R  G  I  V  R  S  Q  I  G  Y  K  Y  L  K  N  *  L  I  V  I  G  M  *  I  Y  *  R  W  F  C  E  Y  Y  H  F  A  L  V  N  R  L  L  Y  F  G  R  *  S  A  H  V  H  I  W  L  *  L  E  C  D  I  V  L  L  F  I  S  R  D  T  T  L  T  F  V  T  S  N  M  K  P  H  I  F  L  A  Q  I  V  G  C  A  K  A  *  K  P  S  *  S  *  I  S  *  C  G  A  *  W  S  Y  D  C  A  Y  G  F  L  Y  L  E  V  N  S  Y  E  A  K  Y  I  I  L  D  L  *  M  I  S  W  M  F  H  R  T  Y  K  L  K  K  V  A  C  *  I  A  L  L  N  T  L  G  S  F  R  L  F  E  K  A  I  G  E  Y  E  P  K  K  R  I  L  M  H  Q  V  S  L  L  F  Q  M  F  L  V  V  G  W  K  Y  F  Y  L  *  I  V  M  L  Y  T  W  R  I  *  *  G  L  L  V  S  D  E  E  N  L  Y  I  S  *  R  *  G  M  T  F  L  C  L  L  L  L  I  S  *  *  L  S  L  D  R  S  *  K  L  E  P  L  I  R  T  F  S  C  E  K  K  H  M  Y  P  F  *  C  V  L  I  Q  R  A  *  S  F  *  M  V  M  L  *  H  *  E  *  I  F  H  D  F  S  I  F  T  I  H  H  C  W  V  C  Q  S  *  L  K  R  P  W  D  G  E  *  F  P  F  W  S  C  F  L  V  F  *  L  V  F  K  S  G  M  V  G  L  D  T  N  T  S  I  I  I  S  H  F  C  F  R  Q  H  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35923" stop="36120"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NEQSENQSEAHSESSSPAAGMSVPGTVTTNMHYVMPNQLGNGNPMVYLKHQLTSNDRFLKITIKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="34274" e_stop="34378"/>
            <exon e_start="35097" e_stop="35160"/>
            <exon e_start="35912" e_stop="36057"/>
            <exon e_start="37961" e_stop="38062"/>
            <exon e_start="38153" e_stop="38317"/>
            <exon e_start="39553" e_stop="40104"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.871" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.980"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34274" e_stop="34378" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.870">
            <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35097" e_stop="35160" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.856" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35912" e_stop="36057" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.871" acc_prob="0.931">
            <gDNA_intron_boundary i_start="36058" i_stop="37960" i_length="1903"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="37961" e_stop="38062" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="38153" e_stop="38317" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38318" i_stop="39552" i_length="1235"/>
          </intron>
          <exon e_serial="6" e_score="0.950">
            <gDNA_exon_boundary e_start="39553" e_stop="40104" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34274" stop="34378"/>
              <exon start="35097" stop="35160"/>
              <exon start="35912" stop="36057"/>
              <exon start="37961" stop="38062"/>
              <exon start="38153" stop="38317"/>
              <exon start="39553" stop="39664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39631" stop="40066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39655" stop="40102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39687" stop="40104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228573" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG : GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG : ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG : GCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATG : GTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG : CCTTACTTGCATGAATCACGACATTTGCATGCATTGAAAAGAGCTAGAGGATGTGGAGGTCGTTTCCTGACAGCAAAGGAAACTGATAATCAGCAGAAACAGGATGAAACTGGTGATAAATCTCAAGTCAACATTAATCTCGAGTCTGGAAAAGACAAGGTCGCTTCTTCAGAGAATGCCTCTTGATCTATGCAATATCAAGGACTTTGTGGACCATAGTATGTTGTTACTGTTTGTAGAAACAGCAGTGCTTTTGTTAAAATAGAATTGTGGTAGCTGGGCAAAATCAGGGTAATTGTGGTGTTCTGTATGTTTATCTGAGTGTAGATAGATCGGAATAGGCCTACTCGTTTGAGAGCTACAAAGTGGCCGCTGGGCGTATGTTCTCTAAATACCATCTCTCTGAGCTTGTTTGTAGACATTCTTTCTTGTCCTTTCGTAATTGCCTTGTGATTCCTTCAAAATGTTGTTCTAGTAAGTGTATGGAATATCGAGTCAGAAATTTGAGTAATAACGTTTGGCACTACGTTTTGTTAGTTTAAGAAGATAAGC</gDNA_template>
            <first_frame> L  Q  T  R  S  K  A  L  S  R  E  G  N  S  T  E  N  T  K  I  K  A  A  Y  W  F  S  Y  T  R  S  S  S  R  K  :  V  C  Y  F  G  D  S  V  A  S  S  I  M  T  S  S  L  H  Y  H  S   : D  G  S  E  N  E  Q  S  E  N  Q  S  E  A  H  S  E  S  S  S  P  A  A  G  M  S  V  P  G  T  V  T  T  N  M  H  Y  V  M  P  N  Q  L  G  N  G  N  P  M  :  A  Q  T  A  Y  P  Y  P  D  P  Y  Y  R  S  I  F  A  P  Y  D  P  Q  P  Y  P  P  Q  P  Y  P  A  Q  P  M  :  V  H  I  Q  L  M  G  I  Q  Q  A  G  V  P  L  P  S  D  A  I  D  E  P  V  F  V  N  A  K  Q  Y  H  G  I  L  R  R  R  Q  S  R  A  K  A  E  S  E  K  K  L  L  K  A  R  K  :  P  Y  L  H  E  S  R  H  L  H  A  L  K  R  A  R  G  C  G  G  R  F  L  T  A  K  E  T  D  N  Q  Q  K  Q  D  E  T  G  D  K  S  Q  V  N  I  N  L  E  S  G  K  D  K  V  A  S  S  E  N  A  S  *  S  M  Q  Y  Q  G  L  C  G  P  *  Y  V  V  T  V  C  R  N  S  S  A  F  V  K  I  E  L  W  *  L  G  K  I  R  V  I  V  V  F  C  M  F  I  *  V  *  I  D  R  N  R  P  T  R  L  R  A  T  K  W  P  L  G  V  C  S  L  N  T  I  S  L  S  L  F  V  D  I  L  S  C  P  F  V  I  A  L  *  F  L  Q  N  V  V  L  V  S  V  W  N  I  E  S  E  I  *  V  I  T  F  G  T  T  F  C  *  F  K  K  I  S </first_frame>
            <second_frame>  Y  K  H  V  V  K  L  S  L  E  K  E  I  Q  Q  R  T  P  K  L  K  L  L  I  G  F  R  I  H  E  A  L  P  E  R :   F  V  T  L  E  I  L  W  Q  A  A  L  *  R  P  R  F  I  I  I  Q  :  M  V  V  R  M  N  S  Q  K  I  N  Q  K  P  T  A  S  L  H  R  L  Q  L  E  C  L  S  L  A  L  *  Q  Q  I  C  T  M  L  C  P  I  N  L  G  M  E  I  L  W :   L  K  Q  L  I  H  I  Q  T  H  T  I  G  A  S  L  H  R  M  I  H  N  L  I  L  H  N  L  I  Q  H  N  Q  W :   F  T  F  S  *  W  E  F  N  K  R  V  F  L  C  H  Q  M  R  *  T  N  L  F  L  L  M  Q  N  S  I  M  A  S  *  G  V  D  N  L  A  R  K  L  S  Q  K  R  N  F  *  K  L  G  S :   L  T  C  M  N  H  D  I  C  M  H  *  K  E  L  E  D  V  E  V  V  S  *  Q  Q  R  K  L  I  I  S  R  N  R  M  K  L  V  I  N  L  K  S  T  L  I  S  S  L  E  K  T  R  S  L  L  Q  R  M  P  L  D  L  C  N  I  K  D  F  V  D  H  S  M  L  L  L  F  V  E  T  A  V  L  L  L  K  *  N  C  G  S  W  A  K  S  G  *  L  W  C  S  V  C  L  S  E  C  R  *  I  G  I  G  L  L  V  *  E  L  Q  S  G  R  W  A  Y  V  L  *  I  P  S  L  *  A  C  L  *  T  F  F  L  V  L  S  *  L  P  C  D  S  F  K  M  L  F  *  *  V  Y  G  I  S  S  Q  K  F  E  *  *  R  L  A  L  R  F  V  S  L  R  R  *   </second_frame>
            <third_frame>   T  N  T  *  *  S  S  L  *  R  R  K  F  N  R  E  H  Q  N  *  S  C  L  L  V  F  V  Y  T  K  L  F  P  K   : G  L  L  L  W  R  F  C  G  K  Q  H  Y  D  V  L  A  S  L  S  F  R :   W  *  *  E  *  T  V  R  K  S  I  R  S  P  Q  R  V  F  I  A  C  S  W  N  V  C  P  W  H  C  N  N  K  Y  A  L  C  Y  A  Q  S  T  W  E  W  K  S  Y   : G  S  N  S  L  S  I  S  R  P  I  L  *  E  H  L  C  T  V  *  S  T  T  L  S  S  T  T  L  S  S  T  T  N   : G  S  H  S  A  N  G  N  S  T  S  G  C  S  F  A  I  R  C  D  R  R  T  C  F  C  *  C  K  T  V  S  W  H  L  E  A  S  T  I  S  R  E  S  *  V  R  K  E  T  S  E  S  *  E   : A  L  L  A  *  I  T  T  F  A  C  I  E  K  S  *  R  M  W  R  S  F  P  D  S  K  G  N  *  *  S  A  E  T  G  *  N  W  *  *  I  S  S  Q  H  *  S  R  V  W  K  R  Q  G  R  F  F  R  E  C  L  L  I  Y  A  I  S  R  T  L  W  T  I  V  C  C  Y  C  L  *  K  Q  Q  C  F  C  *  N  R  I  V  V  A  G  Q  N  Q  G  N  C  G  V  L  Y  V  Y  L  S  V  D  R  S  E  *  A  Y  S  F  E  S  Y  K  V  A  A  G  R  M  F  S  K  Y  H  L  S  E  L  V  C  R  H  S  F  L  S  F  R  N  C  L  V  I  P  S  K  C  C  S  S  K  C  M  E  Y  R  V  R  N  L  S  N  N  V  W  H  Y  V  L  L  V  *  E  D  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34274" stop="34378"/>
                    <exon start="35097" stop="35160"/>
                    <exon start="35912" stop="36057"/>
                    <exon start="37961" stop="38062"/>
                    <exon start="38153" stop="38317"/>
                    <exon start="39553" stop="39738"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQTRSKALSREGNSTENTKIKAAYWFSYTRSSSRKVCYFGDSVASSIMTSSLHYHSDGSENEQSENQSEAHSESSSPAAGMSVPGTVTTNMHYVMPNQLGNGNPMAQTAYPYPDPYYRSIFAPYDPQPYPPQPYPAQPMVHIQLMGIQQAGVPLPSDAIDEPVFVNAKQYHGILRRRQSRAKAESEKKLLKARKPYLHESRHLHALKRARGCGGRFLTAKETDNQQKQDETGDKSQVNINLESGKDKVASSENAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39894" stop="40094"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYSFESYKVAAGRMFSKYHLSELVCRHSFLSFRNCLVIPSKCCSSKCMEYRVRNLSNNVWHYVLLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="34242" e_stop="34378"/>
            <exon e_start="35097" e_stop="35160"/>
            <exon e_start="35912" e_stop="36057"/>
            <exon e_start="36425" e_stop="37290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.870" e_score="0.978"/>
          <exon-intron don_prob="0.856" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.871" acc_prob="0.897" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="34242" e_stop="34378" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.870">
            <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35097" e_stop="35160" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.856" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35912" e_stop="36057" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.871" acc_prob="0.897">
            <gDNA_intron_boundary i_start="36058" i_stop="36424" i_length="367"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="36425" e_stop="37290" e_length="866"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34242" stop="34378"/>
              <exon start="35097" stop="35160"/>
              <exon start="35912" stop="36057"/>
              <exon start="36425" stop="36580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36487" stop="37072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36487" stop="36703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36698" stop="37290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327172" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATAAAGGATGACAAAAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG : GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG : ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG : AGACACCACTTTGACATTTGTAACATCCAACATGAAACCGCATATATTTCTTGCCCAAATAGTTGGTTGTGCAAAAGCCTGAAAGCCAAGTTGATCATAAATATCTTAATGTGGGGCATAATGGAGCTATGATTGTGCTTATGGATTCTTGTATCTAGAGGTAAATTCATATGAAGCAAAATATATTATTTTAGATTTATGAATGATTAGTTGGATGTTTCACCGAACCTATAAATTGAAGAAAGTTGCTTGTTAGATAGCATTACTGAATACATTGGGGTCGTTCAGACTATTTGAGAAAGCAATAGGTGAATATGAACCTAAGAAAAGGATATTAATGCATCAAGTTTCTTTACTATTCCAAATGTTTTTAGTAGTAGGATGGAAATATTTCTACTTATAGATTGTCATGTTGTACACCTGGCGGATATAATAAGGGTTGTTAGTCTCTGATGAGGAAAATTTGTATATTTCTTGAAGATAGGGAATGACCTTTTTGTGCTTATTGCTTTTGATTAGTTGATGACTTTCTCTAGATAGGAGTTAGAAGTTAGAACCACTAATAAGAACATTCAGTTGTGAGAAGAAACACATGTACCCTTTCTAGTGTGTGCTTATACAAAGAGCATAAAGTTTTTGAATGGTGATGTTGTAACATTAAGAATAGATATTTCATGACTTCTCGATATTTACAATCCATCATTGTTGGGTTTGTCAATCATAACTGAAGAGACCTTGGGACGGAGAGTGATTTCCATTTTGGTCTTGTTTTCTGGTATTTTGATTGGTCTTTAAATCAGGTATGGTTGGGTTAGACACAAACACTTCAATTATAATCTCTCATTTCTGTTTTAGGCAACATCCTG</gDNA_template>
            <first_frame> K  I  K  D  D  K  K  N  S  N  S  Y  K  H  V  V  K  L  S  L  E  K  E  I  Q  Q  R  T  P  K  L  K  L  L  I  G  F  R  I  H  E  A  L  P  E  R :   F  V  T  L  E  I  L  W  Q  A  A  L  *  R  P  R  F  I  I  I  Q  :  M  V  V  R  M  N  S  Q  K  I  N  Q  K  P  T  A  S  L  H  R  L  Q  L  E  C  L  S  L  A  L  *  Q  Q  I  C  T  M  L  C  P  I  N  L  G  M  E  I  L  * :   D  T  T  L  T  F  V  T  S  N  M  K  P  H  I  F  L  A  Q  I  V  G  C  A  K  A  *  K  P  S  *  S  *  I  S  *  C  G  A  *  W  S  Y  D  C  A  Y  G  F  L  Y  L  E  V  N  S  Y  E  A  K  Y  I  I  L  D  L  *  M  I  S  W  M  F  H  R  T  Y  K  L  K  K  V  A  C  *  I  A  L  L  N  T  L  G  S  F  R  L  F  E  K  A  I  G  E  Y  E  P  K  K  R  I  L  M  H  Q  V  S  L  L  F  Q  M  F  L  V  V  G  W  K  Y  F  Y  L  *  I  V  M  L  Y  T  W  R  I  *  *  G  L  L  V  S  D  E  E  N  L  Y  I  S  *  R  *  G  M  T  F  L  C  L  L  L  L  I  S  *  *  L  S  L  D  R  S  *  K  L  E  P  L  I  R  T  F  S  C  E  K  K  H  M  Y  P  F  *  C  V  L  I  Q  R  A  *  S  F  *  M  V  M  L  *  H  *  E  *  I  F  H  D  F  S  I  F  T  I  H  H  C  W  V  C  Q  S  *  L  K  R  P  W  D  G  E  *  F  P  F  W  S  C  F  L  V  F  *  L  V  F  K  S  G  M  V  G  L  D  T  N  T  S  I  I  I  S  H  F  C  F  R  Q  H  P  </first_frame>
            <second_frame>  K  *  R  M  T  K  R  I  V  T  V  T  N  T  *  *  S  S  L  *  R  R  K  F  N  R  E  H  Q  N  *  S  C  L  L  V  F  V  Y  T  K  L  F  P  K   : G  L  L  L  W  R  F  C  G  K  Q  H  Y  D  V  L  A  S  L  S  F  R :   W  *  *  E  *  T  V  R  K  S  I  R  S  P  Q  R  V  F  I  A  C  S  W  N  V  C  P  W  H  C  N  N  K  Y  A  L  C  Y  A  Q  S  T  W  E  W  K  S  Y   : E  T  P  L  *  H  L  *  H  P  T  *  N  R  I  Y  F  L  P  K  *  L  V  V  Q  K  P  E  S  Q  V  D  H  K  Y  L  N  V  G  H  N  G  A  M  I  V  L  M  D  S  C  I  *  R  *  I  H  M  K  Q  N  I  L  F  *  I  Y  E  *  L  V  G  C  F  T  E  P  I  N  *  R  K  L  L  V  R  *  H  Y  *  I  H  W  G  R  S  D  Y  L  R  K  Q  *  V  N  M  N  L  R  K  G  Y  *  C  I  K  F  L  Y  Y  S  K  C  F  *  *  *  D  G  N  I  S  T  Y  R  L  S  C  C  T  P  G  G  Y  N  K  G  C  *  S  L  M  R  K  I  C  I  F  L  E  D  R  E  *  P  F  C  A  Y  C  F  *  L  V  D  D  F  L  *  I  G  V  R  S  *  N  H  *  *  E  H  S  V  V  R  R  N  T  C  T  L  S  S  V  C  L  Y  K  E  H  K  V  F  E  W  *  C  C  N  I  K  N  R  Y  F  M  T  S  R  Y  L  Q  S  I  I  V  G  F  V  N  H  N  *  R  D  L  G  T  E  S  D  F  H  F  G  L  V  F  W  Y  F  D  W  S  L  N  Q  V  W  L  G  *  T  Q  T  L  Q  L  *  S  L  I  S  V  L  G  N  I  L </second_frame>
            <third_frame>   N  K  G  *  Q  K  E  *  *  Q  L  Q  T  R  S  K  A  L  S  R  E  G  N  S  T  E  N  T  K  I  K  A  A  Y  W  F  S  Y  T  R  S  S  S  R  K  :  V  C  Y  F  G  D  S  V  A  S  S  I  M  T  S  S  L  H  Y  H  S   : D  G  S  E  N  E  Q  S  E  N  Q  S  E  A  H  S  E  S  S  S  P  A  A  G  M  S  V  P  G  T  V  T  T  N  M  H  Y  V  M  P  N  Q  L  G  N  G  N  P  M  :  R  H  H  F  D  I  C  N  I  Q  H  E  T  A  Y  I  S  C  P  N  S  W  L  C  K  S  L  K  A  K  L  I  I  N  I  L  M  W  G  I  M  E  L  *  L  C  L  W  I  L  V  S  R  G  K  F  I  *  S  K  I  Y  Y  F  R  F  M  N  D  *  L  D  V  S  P  N  L  *  I  E  E  S  C  L  L  D  S  I  T  E  Y  I  G  V  V  Q  T  I  *  E  S  N  R  *  I  *  T  *  E  K  D  I  N  A  S  S  F  F  T  I  P  N  V  F  S  S  R  M  E  I  F  L  L  I  D  C  H  V  V  H  L  A  D  I  I  R  V  V  S  L  *  *  G  K  F  V  Y  F  L  K  I  G  N  D  L  F  V  L  I  A  F  D  *  L  M  T  F  S  R  *  E  L  E  V  R  T  T  N  K  N  I  Q  L  *  E  E  T  H  V  P  F  L  V  C  A  Y  T  K  S  I  K  F  L  N  G  D  V  V  T  L  R  I  D  I  S  *  L  L  D  I  Y  N  P  S  L  L  G  L  S  I  I  T  E  E  T  L  G  R  R  V  I  S  I  L  V  L  F  S  G  I  L  I  G  L  *  I  R  Y  G  W  V  R  H  K  H  F  N  Y  N  L  S  F  L  F  *  A  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34271" stop="34378"/>
                    <exon start="35097" stop="35160"/>
                    <exon start="35912" stop="36057"/>
                    <exon start="36425" stop="36556"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLQTRSKALSREGNSTENTKIKAAYWFSYTRSSSRKVCYFGDSVASSIMTSSLHYHSDGSENEQSENQSEAHSESSSPAAGMSVPGTVTTNMHYVMPNQLGNGNPMRHHFDICNIQHETAYISCPNSWLCKSLKAKLIINILMWGIMEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="34144" e_stop="34378"/>
            <exon e_start="35097" e_stop="35160"/>
            <exon e_start="35912" e_stop="36057"/>
            <exon e_start="37961" e_stop="38062"/>
            <exon e_start="38153" e_stop="38317"/>
            <exon e_start="39510" e_stop="39591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.870" e_score="0.991"/>
          <exon-intron don_prob="0.856" acc_prob="0.994" e_score="0.984"/>
          <exon-intron don_prob="0.871" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.895" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="34144" e_stop="34378" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.870">
            <gDNA_intron_boundary i_start="34379" i_stop="35096" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="35097" e_stop="35160" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.856" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35161" i_stop="35911" i_length="751"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35912" e_stop="36057" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.871" acc_prob="0.931">
            <gDNA_intron_boundary i_start="36058" i_stop="37960" i_length="1903"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37961" e_stop="38062" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="38063" i_stop="38152" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="38153" e_stop="38317" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.895">
            <gDNA_intron_boundary i_start="38318" i_stop="39509" i_length="1192"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39510" e_stop="39591" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34144" stop="34378"/>
              <exon start="35097" stop="35160"/>
              <exon start="35912" stop="36057"/>
              <exon start="37961" stop="38062"/>
              <exon start="38153" stop="38317"/>
              <exon start="39510" stop="39591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722694" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTATCTTCTCAAACGAGATTTCCAATTCAAATTTAATCATATTATATTAATATCAATATAAATATCATATAAATCTAAATTTAATTATGCTCTCAGAAAATAAAGGATGACAAAAAGAATAGTAACAGTTACAAACACGTAGTAAAGCTCTCTCTAGAGAAGGAAATTCAACAGAGAACACCAAAATTAAAGCTGCTTATTGGTTTTCGTATACACGAAGCTCTTCCCGAAAG : GTTTGTTACTTTGGAGATTCTGTGGCAAGCAGCATTATGACGTCCTCGCTTCATTATCATTCAG : ATGGTAGTGAGAATGAACAGTCAGAAAATCAATCAGAAGCCCACAGCGAGTCTTCATCGCCTGCAGCTGGAATGTCTGTCCCTGGCACTGTAACAACAAATATGCACTATGTTATGCCCAATCAACTTGGGAATGGAAATCCTATG : GCTCAAACAGCTTATCCATATCCAGACCCATACTATAGGAGCATCTTTGCACCGTATGATCCACAACCTTATCCTCCACAACCTTATCCAGCACAACCAATG : GTTCACATTCAGCTAATGGGAATTCAACAAGCGGGTGTTCCTTTGCCATCAGATGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCATCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAG : CACGAATACCTTGGGAGGCTCACAGTGCAAAATAATCTTGCAGCCTTACTTGCATGAATCACGACATTTGCATGCATTGAAA</gDNA_template>
            <first_frame> I  Y  L  L  K  R  D  F  Q  F  K  F  N  H  I  I  L  I  S  I  *  I  S  Y  K  S  K  F  N  Y  A  L  R  K  *  R  M  T  K  R  I  V  T  V  T  N  T  *  *  S  S  L  *  R  R  K  F  N  R  E  H  Q  N  *  S  C  L  L  V  F  V  Y  T  K  L  F  P  K   : G  L  L  L  W  R  F  C  G  K  Q  H  Y  D  V  L  A  S  L  S  F  R :   W  *  *  E  *  T  V  R  K  S  I  R  S  P  Q  R  V  F  I  A  C  S  W  N  V  C  P  W  H  C  N  N  K  Y  A  L  C  Y  A  Q  S  T  W  E  W  K  S  Y   : G  S  N  S  L  S  I  S  R  P  I  L  *  E  H  L  C  T  V  *  S  T  T  L  S  S  T  T  L  S  S  T  T  N   : G  S  H  S  A  N  G  N  S  T  S  G  C  S  F  A  I  R  C  D  R  R  T  C  F  C  *  C  K  T  V  S  W  H  L  E  A  S  T  I  S  R  E  S  *  V  R  K  E  T  S  E  S  *  E   : A  R  I  P  W  E  A  H  S  A  K  *  S  C  S  L  T  C  M  N  H  D  I  C  M  H  *   </first_frame>
            <second_frame>  S  I  F  S  N  E  I  S  N  S  N  L  I  I  L  Y  *  Y  Q  Y  K  Y  H  I  N  L  N  L  I  M  L  S  E  N  K  G  *  Q  K  E  *  *  Q  L  Q  T  R  S  K  A  L  S  R  E  G  N  S  T  E  N  T  K  I  K  A  A  Y  W  F  S  Y  T  R  S  S  S  R  K  :  V  C  Y  F  G  D  S  V  A  S  S  I  M  T  S  S  L  H  Y  H  S   : D  G  S  E  N  E  Q  S  E  N  Q  S  E  A  H  S  E  S  S  S  P  A  A  G  M  S  V  P  G  T  V  T  T  N  M  H  Y  V  M  P  N  Q  L  G  N  G  N  P  M  :  A  Q  T  A  Y  P  Y  P  D  P  Y  Y  R  S  I  F  A  P  Y  D  P  Q  P  Y  P  P  Q  P  Y  P  A  Q  P  M  :  V  H  I  Q  L  M  G  I  Q  Q  A  G  V  P  L  P  S  D  A  I  D  E  P  V  F  V  N  A  K  Q  Y  H  G  I  L  R  R  R  Q  S  R  A  K  A  E  S  E  K  K  L  L  K  A  R  K  :  H  E  Y  L  G  R  L  T  V  Q  N  N  L  A  A  L  L  A  *  I  T  T  F  A  C  I  E  </second_frame>
            <third_frame>   L  S  S  Q  T  R  F  P  I  Q  I  *  S  Y  Y  I  N  I  N  I  N  I  I  *  I  *  I  *  L  C  S  Q  K  I  K  D  D  K  K  N  S  N  S  Y  K  H  V  V  K  L  S  L  E  K  E  I  Q  Q  R  T  P  K  L  K  L  L  I  G  F  R  I  H  E  A  L  P  E  R :   F  V  T  L  E  I  L  W  Q  A  A  L  *  R  P  R  F  I  I  I  Q  :  M  V  V  R  M  N  S  Q  K  I  N  Q  K  P  T  A  S  L  H  R  L  Q  L  E  C  L  S  L  A  L  *  Q  Q  I  C  T  M  L  C  P  I  N  L  G  M  E  I  L  W :   L  K  Q  L  I  H  I  Q  T  H  T  I  G  A  S  L  H  R  M  I  H  N  L  I  L  H  N  L  I  Q  H  N  Q  W :   F  T  F  S  *  W  E  F  N  K  R  V  F  L  C  H  Q  M  R  *  T  N  L  F  L  L  M  Q  N  S  I  M  A  S  *  G  V  D  N  L  A  R  K  L  S  Q  K  R  N  F  *  K  L  G  S :   T  N  T  L  G  G  S  Q  C  K  I  I  L  Q  P  Y  L  H  E  S  R  H  L  H  A  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34271" stop="34378"/>
                    <exon start="35097" stop="35160"/>
                    <exon start="35912" stop="36057"/>
                    <exon start="37961" stop="38062"/>
                    <exon start="38153" stop="38317"/>
                    <exon start="39510" stop="39566"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLQTRSKALSREGNSTENTKIKAAYWFSYTRSSSRKVCYFGDSVASSIMTSSLHYHSDGSENEQSENQSEAHSESSSPAAGMSVPGTVTTNMHYVMPNQLGNGNPMAQTAYPYPDPYYRSIFAPYDPQPYPPQPYPAQPMVHIQLMGIQQAGVPLPSDAIDEPVFVNAKQYHGILRRRQSRAKAESEKKLLKARKHEYLGRLTVQNNLAALLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="47681" PGL_stop="39632"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42916" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42916" e_stop="42832" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="41020" e_stop="40724" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42916" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42914" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42908" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42905" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42905" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42904" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42901" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42894" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42894" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42889" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587393" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42878" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42878" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42877" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42876" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42869" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42863" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42863" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42861" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42860" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42859" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42851" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42842" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42842" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624022" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42745" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42717" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283899" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42717" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288670" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42709" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42708" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42690" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42550" stop="42449"/>
              <exon start="41020" stop="40756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42478" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTAGTATT</gDNA_template>
            <first_frame> F  S  S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  T  L  C  L  D  N  F  V  L  *  V  E  D  L  L  L  I  E  L  L  G  F  R  K  L  C  N  L  L  L  K  I  F  M  S  S  R  P  L  F  G  S  *  Y  </first_frame>
            <second_frame>  S  L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K  H  Y  V  *  T  I  L  C  Y  E  L  K  I  C  Y  S  L  N  C  W  A  S  E  N  Y  A  T  F  C  *  K  Y  S  C  P  P  G  L  F  L  V  L  S  I </second_frame>
            <third_frame>   L  F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E  N  T  M  F  R  Q  F  C  A  M  S  *  R  F  V  T  H  *  I  V  G  L  P  K  I  M  Q  P  F  A  E  N  I  H  V  L  Q  A  S  F  W  F  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42916" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40761"/>
            <exon e_start="40479" e_stop="40461"/>
            <exon e_start="40257" e_stop="40187"/>
            <exon e_start="40008" e_stop="39999"/>
            <exon e_start="39739" e_stop="39718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.000" e_score="0.632"/>
          <exon-intron don_prob="0.000" acc_prob="0.479" e_score="0.423"/>
          <exon-intron don_prob="0.969" acc_prob="0.472" e_score="0.700"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42916" e_stop="42832" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41020" e_stop="40761" e_length="260"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40760" i_stop="40480" i_length="281"/>
          </intron>
          <exon e_serial="5" e_score="0.632">
            <gDNA_exon_boundary e_start="40479" e_stop="40461" e_length="19"/>
          </exon>
          <intron i_serial="5" don_prob="0.877" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40460" i_stop="40258" i_length="203"/>
          </intron>
          <exon e_serial="6" e_score="0.423">
            <gDNA_exon_boundary e_start="40257" e_stop="40187" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.479">
            <gDNA_intron_boundary i_start="40186" i_stop="40009" i_length="178"/>
          </intron>
          <exon e_serial="7" e_score="0.700">
            <gDNA_exon_boundary e_start="40008" e_stop="39999" e_length="10"/>
          </exon>
          <intron i_serial="7" don_prob="0.969" acc_prob="0.472">
            <gDNA_intron_boundary i_start="39998" i_stop="39740" i_length="259"/>
          </intron>
          <exon e_serial="8" e_score="0.500">
            <gDNA_exon_boundary e_start="39739" e_stop="39718" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42916" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42914" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42908" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42905" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42904" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42901" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42894" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42889" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587393" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42878" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42878" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42877" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42876" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42869" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42863" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42861" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42860" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42859" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42851" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42842" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624022" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42745" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42717" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40761"/>
              <exon start="40479" stop="40461"/>
              <exon start="40257" stop="40187"/>
              <exon start="40008" stop="39999"/>
              <exon start="39739" stop="39718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42717" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288670" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42709" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42708" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42690" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42478" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATA : ATAAAAAACCTTAAGAAAG : AAGTAAATACAACAGGATATAAATACAAGACCTGCTGCTTTGCAAGACACAAGAATCAATAATCGCAGCGG : GAATCACAAG : ATCAAGAGGCATTCTCTGAAGA</gDNA_template>
            <first_frame> F  S  S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  T  L  C  L  D  N  F  V  L  *  V  E  D  L  L  L  I  E  L  L  G  F  R  K  L  C  N  L  L  L  K  I  :  I  K  N  L  K  K   : E  V  N  T  T  G  Y  K  Y  K  T  C  C  F  A  R  H  K  N  Q  *  S  Q  R  :  E  S  Q   : D  Q  E  A  F  S  E   </first_frame>
            <second_frame>  S  L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K  H  Y  V  *  T  I  L  C  Y  E  L  K  I  C  Y  S  L  N  C  W  A  S  E  N  Y  A  T  F  C  *  K  * :   *  K  T  L  R  K  :  K  *  I  Q  Q  D  I  N  T  R  P  A  A  L  Q  D  T  R  I  N  N  R  S  G :   N  H  K  :  I  K  R  H  S  L  K  </second_frame>
            <third_frame>   L  F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E  N  T  M  F  R  Q  F  C  A  M  S  *  R  F  V  T  H  *  I  V  G  L  P  K  I  M  Q  P  F  A  E  N   : N  K  K  P  *  E  R :   S  K  Y  N  R  I  *  I  Q  D  L  L  L  C  K  T  Q  E  S  I  I  A  A   : G  I  T  R :   S  R  G  I  L  *  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="42916" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40762"/>
            <exon e_start="40242" e_stop="40226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.562" e_score="1.000"/>
          <exon-only e_score="0.529"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42916" e_stop="42832" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41020" e_stop="40762" e_length="259"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.562">
            <gDNA_intron_boundary i_start="40761" i_stop="40243" i_length="519"/>
          </intron>
          <exon e_serial="5" e_score="0.529">
            <gDNA_exon_boundary e_start="40242" e_stop="40226" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42916" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42914" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42908" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42905" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42904" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42901" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42894" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42889" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587393" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42878" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42878" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42877" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40762"/>
              <exon start="40242" stop="40226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42877" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42876" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42869" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42863" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42861" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42860" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42859" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42851" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42842" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624022" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42745" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42717" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288670" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42709" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42708" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42690" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42478" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAAT : GATATAAATACAAGACC</gDNA_template>
            <first_frame> F  S  S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  T  L  C  L  D  N  F  V  L  *  V  E  D  L  L  L  I  E  L  L  G  F  R  K  L  C  N  L  L  L  K  M :   I  *  I  Q  D  </first_frame>
            <second_frame>  S  L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K  H  Y  V  *  T  I  L  C  Y  E  L  K  I  C  Y  S  L  N  C  W  A  S  E  N  Y  A  T  F  C  *  K   : *  Y  K  Y  K  T </second_frame>
            <third_frame>   L  F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E  N  T  M  F  R  Q  F  C  A  M  S  *  R  F  V  T  H  *  I  V  G  L  P  K  I  M  Q  P  F  A  E  N  :  D  I  N  T  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="42916" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40764"/>
            <exon e_start="40482" e_stop="40461"/>
            <exon e_start="40242" e_stop="40230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.562" e_score="0.636"/>
          <exon-only e_score="0.615"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42916" e_stop="42832" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41020" e_stop="40764" e_length="257"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40763" i_stop="40483" i_length="281"/>
          </intron>
          <exon e_serial="5" e_score="0.636">
            <gDNA_exon_boundary e_start="40482" e_stop="40461" e_length="22"/>
          </exon>
          <intron i_serial="5" don_prob="0.877" acc_prob="0.562">
            <gDNA_intron_boundary i_start="40460" i_stop="40243" i_length="218"/>
          </intron>
          <exon e_serial="6" e_score="0.615">
            <gDNA_exon_boundary e_start="40242" e_stop="40230" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42916" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42914" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42908" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42905" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42904" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42901" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42894" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42889" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587393" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42878" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42878" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42877" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42876" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42869" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42863" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42861" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42860" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42859" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42851" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42842" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624022" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42745" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42717" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288670" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42708" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42690" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42496" stop="42449"/>
              <exon start="41020" stop="40764"/>
              <exon start="40482" stop="40461"/>
              <exon start="40242" stop="40230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42478" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAA : TCCATAAAAAACCTTAAGAAAG : GATATAAATACAA</gDNA_template>
            <first_frame> F  S  S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  T  L  C  L  D  N  F  V  L  *  V  E  D  L  L  L  I  E  L  L  G  F  R  K  L  C  N  L  L  L  K  :  S  I  K  N  L  K  K   : G  Y  K  Y   </first_frame>
            <second_frame>  S  L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K  H  Y  V  *  T  I  L  C  Y  E  L  K  I  C  Y  S  L  N  C  W  A  S  E  N  Y  A  T  F  C  *  N :   P  *  K  T  L  R  K  :  D  I  N  T  </second_frame>
            <third_frame>   L  F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E  N  T  M  F  R  Q  F  C  A  M  S  *  R  F  V  T  H  *  I  V  G  L  P  K  I  M  Q  P  F  A  E   : I  H  K  K  P  *  E  R :   I  *  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="42916" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40764"/>
            <exon e_start="40242" e_stop="40231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.562" e_score="1.000"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42916" e_stop="42832" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41020" e_stop="40764" e_length="257"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.562">
            <gDNA_intron_boundary i_start="40763" i_stop="40243" i_length="521"/>
          </intron>
          <exon e_serial="5" e_score="0.583">
            <gDNA_exon_boundary e_start="40242" e_stop="40231" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42916" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42914" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42908" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42905" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42904" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42901" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42894" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42889" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587393" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42878" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42878" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42877" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42876" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42869" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42863" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42861" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42860" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42859" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42851" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42850" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
              <exon start="40242" stop="40231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42842" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624022" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42745" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42717" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288670" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42708" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42690" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42478" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAA : GATATAAATACA</gDNA_template>
            <first_frame> F  S  S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  T  L  C  L  D  N  F  V  L  *  V  E  D  L  L  L  I  E  L  L  G  F  R  K  L  C  N  L  L  L  K  :  D  I  N  T </first_frame>
            <second_frame>  S  L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K  H  Y  V  *  T  I  L  C  Y  E  L  K  I  C  Y  S  L  N  C  W  A  S  E  N  Y  A  T  F  C  *  K :   I  *  I   </second_frame>
            <third_frame>   L  F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E  N  T  M  F  R  Q  F  C  A  M  S  *  R  F  V  T  H  *  I  V  G  L  P  K  I  M  Q  P  F  A  E   : R  Y  K  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="42916" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40763"/>
            <exon e_start="40257" e_stop="40228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42916" e_stop="42832" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41020" e_stop="40763" e_length="258"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40762" i_stop="40258" i_length="505"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="40257" e_stop="40228" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42916" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42914" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42908" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42905" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42904" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42901" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42894" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42889" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40763"/>
              <exon start="40257" stop="40228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587393" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42878" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42878" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42877" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42876" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42869" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42863" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42861" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42860" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42859" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42851" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42842" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624022" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42745" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42717" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288670" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42708" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42690" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42478" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAA : AAGTAAATACAACAGGATATAAATACAAGA</gDNA_template>
            <first_frame> F  S  S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  T  L  C  L  D  N  F  V  L  *  V  E  D  L  L  L  I  E  L  L  G  F  R  K  L  C  N  L  L  L  K   : K  V  N  T  T  G  Y  K  Y  K  </first_frame>
            <second_frame>  S  L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K  H  Y  V  *  T  I  L  C  Y  E  L  K  I  C  Y  S  L  N  C  W  A  S  E  N  Y  A  T  F  C  *  K  :  K  *  I  Q  Q  D  I  N  T  R </second_frame>
            <third_frame>   L  F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E  N  T  M  F  R  Q  F  C  A  M  S  *  R  F  V  T  H  *  I  V  G  L  P  K  I  M  Q  P  F  A  E  K :   S  K  Y  N  R  I  *  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="42912" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40804"/>
            <exon e_start="40267" e_stop="40228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.550"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42912" e_stop="42832" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41020" e_stop="40804" e_length="217"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40803" i_stop="40268" i_length="536"/>
          </intron>
          <exon e_serial="5" e_score="0.550">
            <gDNA_exon_boundary e_start="40267" e_stop="40228" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42908" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42905" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42904" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42901" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42894" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42889" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587393" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42877" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42869" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42861" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42860" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42842" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624022" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42746" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
              <exon start="40267" stop="40228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42478" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA : GAATATCTAGAAGTAAATACAACAGGATATAAATACAAGA</gDNA_template>
            <first_frame> L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K  H  Y  V  *  T  I  L  C  Y  E  L  K  I  C  Y  S  L   : R  I  S  R  S  K  Y  N  R  I  *  I  Q   </first_frame>
            <second_frame>  F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E  N  T  M  F  R  Q  F  C  A  M  S  *  R  F  V  T  H  *  :  E  Y  L  E  V  N  T  T  G  Y  K  Y  K  </second_frame>
            <third_frame>   S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  T  L  C  L  D  N  F  V  L  *  V  E  D  L  L  L  I  E :   N  I  *  K  *  I  Q  Q  D  I  N  T  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="42912" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40803"/>
            <exon e_start="40242" e_stop="40230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.562" e_score="1.000"/>
          <exon-only e_score="0.615"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42912" e_stop="42832" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41020" e_stop="40803" e_length="218"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.562">
            <gDNA_intron_boundary i_start="40802" i_stop="40243" i_length="560"/>
          </intron>
          <exon e_serial="5" e_score="0.615">
            <gDNA_exon_boundary e_start="40242" e_stop="40230" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42908" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42905" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42904" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42901" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42894" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42889" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587393" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42877" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42869" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42863" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40803"/>
              <exon start="40242" stop="40230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42861" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42860" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42842" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624022" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42478" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAA : GATATAAATACAA</gDNA_template>
            <first_frame> L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K  H  Y  V  *  T  I  L  C  Y  E  L  K  I  C  Y  S  L  K :   I  *  I  Q </first_frame>
            <second_frame>  F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E  N  T  M  F  R  Q  F  C  A  M  S  *  R  F  V  T  H  *   : R  Y  K  Y   </second_frame>
            <third_frame>   S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  T  L  C  L  D  N  F  V  L  *  V  E  D  L  L  L  I  E  :  D  I  N  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="42912" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40801"/>
            <exon e_start="40242" e_stop="40228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.562" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42912" e_stop="42832" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41020" e_stop="40801" e_length="220"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.562">
            <gDNA_intron_boundary i_start="40800" i_stop="40243" i_length="558"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="40242" e_stop="40228" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42908" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42905" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42904" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42901" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42894" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42889" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587393" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42877" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42876" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40801"/>
              <exon start="40242" stop="40228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587002" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42869" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42861" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42860" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42842" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624022" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42478" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATT : GATATAAATACAAGA</gDNA_template>
            <first_frame> L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K  H  Y  V  *  T  I  L  C  Y  E  L  K  I  C  Y  S  L  N   : *  Y  K  Y  K  </first_frame>
            <second_frame>  F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E  N  T  M  F  R  Q  F  C  A  M  S  *  R  F  V  T  H  *  I  :  D  I  N  T  R </second_frame>
            <third_frame>   S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  T  L  C  L  D  N  F  V  L  *  V  E  D  L  L  L  I  E  L :   I  *  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="42912" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40801"/>
            <exon e_start="40267" e_stop="40230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.553"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42912" e_stop="42832" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41020" e_stop="40801" e_length="220"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40800" i_stop="40268" i_length="533"/>
          </intron>
          <exon e_serial="5" e_score="0.553">
            <gDNA_exon_boundary e_start="40267" e_stop="40230" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40801"/>
              <exon start="40267" stop="40230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42908" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42905" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42904" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42901" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42894" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42889" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587393" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42877" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42869" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42861" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42860" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42842" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624022" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42478" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="10" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATT : GAATATCTAGAAGTAAATACAACAGGATATAAATACAA</gDNA_template>
            <first_frame> L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K  H  Y  V  *  T  I  L  C  Y  E  L  K  I  C  Y  S  L  N   : *  I  S  R  S  K  Y  N  R  I  *  I  Q </first_frame>
            <second_frame>  F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E  N  T  M  F  R  Q  F  C  A  M  S  *  R  F  V  T  H  *  I  :  E  Y  L  E  V  N  T  T  G  Y  K  Y   </second_frame>
            <third_frame>   S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  T  L  C  L  D  N  F  V  L  *  V  E  D  L  L  L  I  E  L :   N  I  *  K  *  I  Q  Q  D  I  N  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="10" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="11">
          <exon_coordinates>
            <exon e_start="42912" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40804"/>
            <exon e_start="40242" e_stop="40228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.562" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42912" e_stop="42832" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41020" e_stop="40804" e_length="217"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.562">
            <gDNA_intron_boundary i_start="40803" i_stop="40243" i_length="561"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="40242" e_stop="40228" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
              <exon start="40242" stop="40228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42908" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42905" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42904" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42901" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42894" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42889" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587393" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42877" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42869" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42861" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42860" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42842" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624022" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42478" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="11" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGA : GATATAAATACAAGA</gDNA_template>
            <first_frame> L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K  H  Y  V  *  T  I  L  C  Y  E  L  K  I  C  Y  S  L   : R  Y  K  Y  K  </first_frame>
            <second_frame>  F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E  N  T  M  F  R  Q  F  C  A  M  S  *  R  F  V  T  H  *  :  D  I  N  T  R </second_frame>
            <third_frame>   S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  T  L  C  L  D  N  F  V  L  *  V  E  D  L  L  L  I  E :   I  *  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="11" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="12">
          <exon_coordinates>
            <exon e_start="42921" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40801"/>
            <exon e_start="40008" e_stop="39954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.479" e_score="1.000"/>
          <exon-only e_score="0.491"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42921" e_stop="42832" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41020" e_stop="40801" e_length="220"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.479">
            <gDNA_intron_boundary i_start="40800" i_stop="40009" i_length="792"/>
          </intron>
          <exon e_serial="5" e_score="0.491">
            <gDNA_exon_boundary e_start="40008" e_stop="39954" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42921" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40801"/>
              <exon start="40008" stop="39954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42912" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42911" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42908" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42905" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42904" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42901" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42894" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42889" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42884" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587393" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42882" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42877" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42875" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42874" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42869" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42866" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42861" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42860" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42842" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624022" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42478" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="12" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCCTTTCTCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATT : GAATCACAAGGCAATTACGAAAGGACAAGAAAGAATGTCTACAAACAAGCTCAGA</gDNA_template>
            <first_frame> R  L  S  L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K  H  Y  V  *  T  I  L  C  Y  E  L  K  I  C  Y  S  L  N   : *  I  T  R  Q  L  R  K  D  K  K  E  C  L  Q  T  S  S   </first_frame>
            <second_frame>  A  F  L  F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E  N  T  M  F  R  Q  F  C  A  M  S  *  R  F  V  T  H  *  I  :  E  S  Q  G  N  Y  E  R  T  R  K  N  V  Y  K  Q  A  Q  </second_frame>
            <third_frame>   P  F  S  S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  T  L  C  L  D  N  F  V  L  *  V  E  D  L  L  L  I  E  L :   N  H  K  A  I  T  K  G  Q  E  R  M  S  T  N  K  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="12" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="13">
          <exon_coordinates>
            <exon e_start="47679" e_stop="47465"/>
            <exon e_start="44150" e_stop="43753"/>
            <exon e_start="43639" e_stop="43591"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="0.942"/>
          <exon-intron don_prob="0.900" acc_prob="1.000" e_score="0.367"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.993"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="47679" e_stop="47465" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="44150" e_stop="43753" e_length="398"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="43752" i_stop="43640" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="0.367">
            <gDNA_exon_boundary e_start="43639" e_stop="43591" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43590" i_stop="42751" i_length="840"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="41020" e_stop="40729" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47679" stop="47465"/>
              <exon start="44150" stop="43858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47678" stop="47465"/>
              <exon start="44150" stop="43756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47666" stop="47465"/>
              <exon start="44150" stop="43753"/>
              <exon start="43639" stop="43591"/>
              <exon start="42750" stop="42735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47650" stop="47465"/>
              <exon start="44150" stop="43822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47650" stop="47465"/>
              <exon start="44150" stop="43822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47649" stop="47465"/>
              <exon start="44150" stop="43822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42745" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42717" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283899" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42717" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288670" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42709" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42708" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42690" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42550" stop="42449"/>
              <exon start="41020" stop="40756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42478" stop="42449"/>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41020" stop="40804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="13" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAGAAGCAGAGAAGAAGGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGG : GTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTAATTTTATGTTACTACTCTTCCGTCCACTTTTATTCTGTTTACTGTAATAAAAAATTGCAAAACATATTT : GTATAAAAGAGAACTCTAGCCTACCTACGTGGCGCTACTACAAATCAAA : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAAACACTATGTTTAGACAATTTTGTGCTATGAGTTGAAGATTTGTTACTCATTGAATTGTTGGGCTTCCGAAAATTATGCAACCTTTTGCTGAAAATATTCATGTCCTCCAGGCCTCTTTTTGGTTCTTA</gDNA_template>
            <first_frame> V  R  S  R  E  E  G  T  R  R  *  T  R  R  K  C  L  S  *  L  K  G  F  E  E  E  L  K  I  A  *  E  *  Q  E  K  E  L  R  R  R  F  S  T  H  T  E  T  A  A  T  R  R  G  I  C  V  L  S  G  F  N  A  S  M  P  E  L  V  N  T  G :   *  I  M  A  I  S  C  T  G  *  *  R  R  T  Y  S  *  T  G  K  S  C  Q  N  C  R  C  T  N  H  T  A  S  R  P  S  W  M  S  L  A  A  L  S  L  G  I  R  S  P  *  Y  L  Q  R  R  K  D  L  L  L  F  F  E  L  V  S  C  V  V  L  C  V  L  F  F  F  F  V  R  H  N  F  V  L  A  F  L  L  A  S  L  Y  Q  W  Y  *  S  L  L  F  T  T  V  L  *  W  K  F  N  F  M  L  L  L  F  R  P  L  L  F  C  L  L  *  *  K  I  A  K  H  I   : C  I  K  E  N  S  S  L  P  T  W  R  Y  Y  K  S  K :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E  N  T  M  F  R  Q  F  C  A  M  S  *  R  F  V  T  H  *  I  V  G  L  P  K  I  M  Q  P  F  A  E  N  I  H  V  L  Q  A  S  F  W  F  L </first_frame>
            <second_frame>  *  E  A  E  K  K  A  Q  E  D  E  Q  E  G  S  V  *  A  S  *  R  V  S  R  K  S  *  K  L  H  K  N  S  K  R  K  S  *  E  G  A  S  V  L  I  Q  R  P  P  Q  Q  E  E  G  Y  A  F  S  L  D  S  T  H  Q  C  R  N  S  S  T  R   : G  E  L  W  Q  F  H  A  R  V  D  E  G  E  R  T  A  E  Q  E  S  L  V  R  T  V  D  A  R  T  I  Q  L  Q  G  P  R  G  C  L  S  Q  R  F  P  W  E  *  E  V  H  S  T  S  K  E  G  R  T  C  C  C  S  L  N  *  F  P  V  L  C  F  V  Y  S  S  S  S  S  L  G  I  I  L  C  *  H  F  C  *  Q  V  S  T  N  G  I  E  V  F  C  L  R  Q  C  F  N  G  N  L  I  L  C  Y  Y  S  S  V  H  F  Y  S  V  Y  C  N  K  K  L  Q  N  I  F  :  V  *  K  R  T  L  A  Y  L  R  G  A  T  T  N  Q   : S  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  T  L  C  L  D  N  F  V  L  *  V  E  D  L  L  L  I  E  L  L  G  F  R  K  L  C  N  L  L  L  K  I  F  M  S  S  R  P  L  F  G  S   </second_frame>
            <third_frame>   E  K  Q  R  R  R  H  K  K  M  N  K  K  E  V  F  K  L  A  K  G  F  R  G  R  A  K  N  C  I  R  I  A  R  E  R  V  E  K  A  L  Q  Y  S  Y  R  D  R  R  N  K  K  R  D  M  R  S  L  W  I  Q  R  I  N  A  G  T  R  Q  H  G  :  V  N  Y  G  N  F  M  H  G  L  M  K  E  N  V  Q  L  N  R  K  V  L  S  E  L  S  M  H  E  P  Y  S  F  K  A  L  V  D  V  S  R  S  A  F  P  G  N  K  K  S  I  V  P  P  K  K  E  G  L  A  V  V  L  *  I  S  F  L  C  C  A  L  C  T  L  L  L  L  R  *  A  *  F  C  A  S  I  S  V  S  K  S  L  P  M  V  L  K  S  S  V  Y  D  S  A  L  M  E  I  *  F  Y  V  T  T  L  P  S  T  F  I  L  F  T  V  I  K  N  C  K  T  Y  L :   Y  K  R  E  L  *  P  T  Y  V  A  L  L  Q  I  K  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K  H  Y  V  *  T  I  L  C  Y  E  L  K  I  C  Y  S  L  N  C  W  A  S  E  N  Y  A  T  F  C  *  K  Y  S  C  P  P  G  L  F  L  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="13" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47677" stop="47465"/>
                    <exon start="44150" stop="43959"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKQRRRHKKMNKKEVFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDVSRSAFPGNKKSIVPPKKEGLAVVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="13" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43620" stop="43591"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTYVALLQIKAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="14">
          <exon_coordinates>
            <exon e_start="47681" e_stop="47465"/>
            <exon e_start="44150" e_stop="43809"/>
            <exon e_start="43639" e_stop="43619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="0.986"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.615"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="47681" e_stop="47465" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44150" e_stop="43809" e_length="342"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="43808" i_stop="43640" i_length="169"/>
          </intron>
          <exon e_serial="3" e_score="0.615">
            <gDNA_exon_boundary e_start="43639" e_stop="43619" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47681" stop="47465"/>
              <exon start="44150" stop="43809"/>
              <exon start="43639" stop="43627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47679" stop="47465"/>
              <exon start="44150" stop="43858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47665" stop="47465"/>
              <exon start="44150" stop="43809"/>
              <exon start="43639" stop="43619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431396" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47665" stop="47465"/>
              <exon start="44150" stop="43809"/>
              <exon start="43639" stop="43620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47650" stop="47465"/>
              <exon start="44150" stop="43822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47650" stop="47465"/>
              <exon start="44150" stop="43822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47649" stop="47465"/>
              <exon start="44150" stop="43822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="14" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTGAGAAGCAGAGAAGAAGGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGG : GTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTAATTTTATGTTACT : GTATAAAAGAGAACTCTAGCC</gDNA_template>
            <first_frame> *  *  E  A  E  K  K  A  Q  E  D  E  Q  E  G  S  V  *  A  S  *  R  V  S  R  K  S  *  K  L  H  K  N  S  K  R  K  S  *  E  G  A  S  V  L  I  Q  R  P  P  Q  Q  E  E  G  Y  A  F  S  L  D  S  T  H  Q  C  R  N  S  S  T  R   : G  E  L  W  Q  F  H  A  R  V  D  E  G  E  R  T  A  E  Q  E  S  L  V  R  T  V  D  A  R  T  I  Q  L  Q  G  P  R  G  C  L  S  Q  R  F  P  W  E  *  E  V  H  S  T  S  K  E  G  R  T  C  C  C  S  L  N  *  F  P  V  L  C  F  V  Y  S  S  S  S  S  L  G  I  I  L  C  *  H  F  C  *  Q  V  S  T  N  G  I  E  V  F  C  L  R  Q  C  F  N  G  N  L  I  L  C  Y   : C  I  K  E  N  S  S  </first_frame>
            <second_frame>  S  E  K  Q  R  R  R  H  K  K  M  N  K  K  E  V  F  K  L  A  K  G  F  R  G  R  A  K  N  C  I  R  I  A  R  E  R  V  E  K  A  L  Q  Y  S  Y  R  D  R  R  N  K  K  R  D  M  R  S  L  W  I  Q  R  I  N  A  G  T  R  Q  H  G  :  V  N  Y  G  N  F  M  H  G  L  M  K  E  N  V  Q  L  N  R  K  V  L  S  E  L  S  M  H  E  P  Y  S  F  K  A  L  V  D  V  S  R  S  A  F  P  G  N  K  K  S  I  V  P  P  K  K  E  G  L  A  V  V  L  *  I  S  F  L  C  C  A  L  C  T  L  L  L  L  R  *  A  *  F  C  A  S  I  S  V  S  K  S  L  P  M  V  L  K  S  S  V  Y  D  S  A  L  M  E  I  *  F  Y  V  T  :  V  *  K  R  T  L  A </second_frame>
            <third_frame>   V  R  S  R  E  E  G  T  R  R  *  T  R  R  K  C  L  S  *  L  K  G  F  E  E  E  L  K  I  A  *  E  *  Q  E  K  E  L  R  R  R  F  S  T  H  T  E  T  A  A  T  R  R  G  I  C  V  L  S  G  F  N  A  S  M  P  E  L  V  N  T  G :   *  I  M  A  I  S  C  T  G  *  *  R  R  T  Y  S  *  T  G  K  S  C  Q  N  C  R  C  T  N  H  T  A  S  R  P  S  W  M  S  L  A  A  L  S  L  G  I  R  S  P  *  Y  L  Q  R  R  K  D  L  L  L  F  F  E  L  V  S  C  V  V  L  C  V  L  F  F  F  F  V  R  H  N  F  V  L  A  F  L  L  A  S  L  Y  Q  W  Y  *  S  L  L  F  T  T  V  L  *  W  K  F  N  F  M  L  L :   Y  K  R  E  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="14" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47680" stop="47465"/>
                    <exon start="44150" stop="43959"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEKQRRRHKKMNKKEVFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDVSRSAFPGNKKSIVPPKKEGLAVVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="15">
          <exon_coordinates>
            <exon e_start="47679" e_stop="47465"/>
            <exon e_start="44150" e_stop="43730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="0.995"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="47679" e_stop="47465" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="44150" e_stop="43730" e_length="421"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47679" stop="47465"/>
              <exon start="44150" stop="43858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47678" stop="47465"/>
              <exon start="44150" stop="43756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47669" stop="47465"/>
              <exon start="44150" stop="43730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47650" stop="47465"/>
              <exon start="44150" stop="43822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47650" stop="47465"/>
              <exon start="44150" stop="43822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47649" stop="47465"/>
              <exon start="44150" stop="43822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="15" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAGAAGCAGAGAAGAAGGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGG : GTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTAATTTTATGTTACTACTCTTCCGTCCACTTTTATTCTGTTTACTGTAATAAAAAATTGCAAAACATATTTCACTTGTTAAATACTGTAATTAT</gDNA_template>
            <first_frame> V  R  S  R  E  E  G  T  R  R  *  T  R  R  K  C  L  S  *  L  K  G  F  E  E  E  L  K  I  A  *  E  *  Q  E  K  E  L  R  R  R  F  S  T  H  T  E  T  A  A  T  R  R  G  I  C  V  L  S  G  F  N  A  S  M  P  E  L  V  N  T  G :   *  I  M  A  I  S  C  T  G  *  *  R  R  T  Y  S  *  T  G  K  S  C  Q  N  C  R  C  T  N  H  T  A  S  R  P  S  W  M  S  L  A  A  L  S  L  G  I  R  S  P  *  Y  L  Q  R  R  K  D  L  L  L  F  F  E  L  V  S  C  V  V  L  C  V  L  F  F  F  F  V  R  H  N  F  V  L  A  F  L  L  A  S  L  Y  Q  W  Y  *  S  L  L  F  T  T  V  L  *  W  K  F  N  F  M  L  L  L  F  R  P  L  L  F  C  L  L  *  *  K  I  A  K  H  I  S  L  V  K  Y  C  N  Y </first_frame>
            <second_frame>  *  E  A  E  K  K  A  Q  E  D  E  Q  E  G  S  V  *  A  S  *  R  V  S  R  K  S  *  K  L  H  K  N  S  K  R  K  S  *  E  G  A  S  V  L  I  Q  R  P  P  Q  Q  E  E  G  Y  A  F  S  L  D  S  T  H  Q  C  R  N  S  S  T  R   : G  E  L  W  Q  F  H  A  R  V  D  E  G  E  R  T  A  E  Q  E  S  L  V  R  T  V  D  A  R  T  I  Q  L  Q  G  P  R  G  C  L  S  Q  R  F  P  W  E  *  E  V  H  S  T  S  K  E  G  R  T  C  C  C  S  L  N  *  F  P  V  L  C  F  V  Y  S  S  S  S  S  L  G  I  I  L  C  *  H  F  C  *  Q  V  S  T  N  G  I  E  V  F  C  L  R  Q  C  F  N  G  N  L  I  L  C  Y  Y  S  S  V  H  F  Y  S  V  Y  C  N  K  K  L  Q  N  I  F  H  L  L  N  T  V  I   </second_frame>
            <third_frame>   E  K  Q  R  R  R  H  K  K  M  N  K  K  E  V  F  K  L  A  K  G  F  R  G  R  A  K  N  C  I  R  I  A  R  E  R  V  E  K  A  L  Q  Y  S  Y  R  D  R  R  N  K  K  R  D  M  R  S  L  W  I  Q  R  I  N  A  G  T  R  Q  H  G  :  V  N  Y  G  N  F  M  H  G  L  M  K  E  N  V  Q  L  N  R  K  V  L  S  E  L  S  M  H  E  P  Y  S  F  K  A  L  V  D  V  S  R  S  A  F  P  G  N  K  K  S  I  V  P  P  K  K  E  G  L  A  V  V  L  *  I  S  F  L  C  C  A  L  C  T  L  L  L  L  R  *  A  *  F  C  A  S  I  S  V  S  K  S  L  P  M  V  L  K  S  S  V  Y  D  S  A  L  M  E  I  *  F  Y  V  T  T  L  P  S  T  F  I  L  F  T  V  I  K  N  C  K  T  Y  F  T  C  *  I  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="15" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47677" stop="47465"/>
                    <exon start="44150" stop="43959"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKQRRRHKKMNKKEVFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDVSRSAFPGNKKSIVPPKKEGLAVVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="16">
          <exon_coordinates>
            <exon e_start="47679" e_stop="47465"/>
            <exon e_start="44150" e_stop="43815"/>
            <exon e_start="43639" e_stop="43628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="47679" e_stop="47465" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="47464" i_stop="44151" i_length="3314"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44150" e_stop="43815" e_length="336"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="43814" i_stop="43640" i_length="175"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="43639" e_stop="43628" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47679" stop="47465"/>
              <exon start="44150" stop="43858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47664" stop="47465"/>
              <exon start="44150" stop="43815"/>
              <exon start="43639" stop="43628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47650" stop="47465"/>
              <exon start="44150" stop="43822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47650" stop="47465"/>
              <exon start="44150" stop="43822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47649" stop="47465"/>
              <exon start="44150" stop="43822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="16" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAGAAGCAGAGAAGAAGGCACAAGAAGATGAACAAGAAGGAAGTGTTTAAGCTAGCTAAAGGGTTTCGAGGAAGAGCTAAAAATTGCATAAGAATAGCAAGAGAAAGAGTTGAGAAGGCGCTTCAGTACTCATACAGAGACCGCCGCAACAAGAAGAGGGATATGCGTTCTCTCTGGATTCAACGCATCAATGCCGGAACTCGTCAACACGGG : GTGAATTATGGCAATTTCATGCACGGGTTGATGAAGGAGAACGTACAGCTGAACAGGAAAGTCTTGTCAGAACTGTCGATGCACGAACCATACAGCTTCAAGGCCCTCGTGGATGTCTCTCGCAGCGCTTTCCCTGGGAATAAGAAGTCCATAGTACCTCCAAAGAAGGAAGGACTTGCTGTTGTTCTTTGAATTAGTTTCCTGTGTTGTGCTTTGTGTACTCTTCTTCTTCTTCGTTAGGCATAATTTTGTGCTAGCATTTCTGTTAGCAAGTCTCTACCAATGGTATTGAAGTCTTCTGTTTACGACAGTGCTTTAATGGAAATTTAATTTTAT : GTATAAAAGAGA</gDNA_template>
            <first_frame> V  R  S  R  E  E  G  T  R  R  *  T  R  R  K  C  L  S  *  L  K  G  F  E  E  E  L  K  I  A  *  E  *  Q  E  K  E  L  R  R  R  F  S  T  H  T  E  T  A  A  T  R  R  G  I  C  V  L  S  G  F  N  A  S  M  P  E  L  V  N  T  G :   *  I  M  A  I  S  C  T  G  *  *  R  R  T  Y  S  *  T  G  K  S  C  Q  N  C  R  C  T  N  H  T  A  S  R  P  S  W  M  S  L  A  A  L  S  L  G  I  R  S  P  *  Y  L  Q  R  R  K  D  L  L  L  F  F  E  L  V  S  C  V  V  L  C  V  L  F  F  F  F  V  R  H  N  F  V  L  A  F  L  L  A  S  L  Y  Q  W  Y  *  S  L  L  F  T  T  V  L  *  W  K  F  N  F  M :   Y  K  R   </first_frame>
            <second_frame>  *  E  A  E  K  K  A  Q  E  D  E  Q  E  G  S  V  *  A  S  *  R  V  S  R  K  S  *  K  L  H  K  N  S  K  R  K  S  *  E  G  A  S  V  L  I  Q  R  P  P  Q  Q  E  E  G  Y  A  F  S  L  D  S  T  H  Q  C  R  N  S  S  T  R   : G  E  L  W  Q  F  H  A  R  V  D  E  G  E  R  T  A  E  Q  E  S  L  V  R  T  V  D  A  R  T  I  Q  L  Q  G  P  R  G  C  L  S  Q  R  F  P  W  E  *  E  V  H  S  T  S  K  E  G  R  T  C  C  C  S  L  N  *  F  P  V  L  C  F  V  Y  S  S  S  S  S  L  G  I  I  L  C  *  H  F  C  *  Q  V  S  T  N  G  I  E  V  F  C  L  R  Q  C  F  N  G  N  L  I  L   : C  I  K  E  </second_frame>
            <third_frame>   E  K  Q  R  R  R  H  K  K  M  N  K  K  E  V  F  K  L  A  K  G  F  R  G  R  A  K  N  C  I  R  I  A  R  E  R  V  E  K  A  L  Q  Y  S  Y  R  D  R  R  N  K  K  R  D  M  R  S  L  W  I  Q  R  I  N  A  G  T  R  Q  H  G  :  V  N  Y  G  N  F  M  H  G  L  M  K  E  N  V  Q  L  N  R  K  V  L  S  E  L  S  M  H  E  P  Y  S  F  K  A  L  V  D  V  S  R  S  A  F  P  G  N  K  K  S  I  V  P  P  K  K  E  G  L  A  V  V  L  *  I  S  F  L  C  C  A  L  C  T  L  L  L  L  R  *  A  *  F  C  A  S  I  S  V  S  K  S  L  P  M  V  L  K  S  S  V  Y  D  S  A  L  M  E  I  *  F  Y  :  V  *  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="16" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47677" stop="47465"/>
                    <exon start="44150" stop="43959"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKQRRRHKKMNKKEVFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDVSRSAFPGNKKSIVPPKKEGLAVVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="17">
          <exon_coordinates>
            <exon e_start="42910" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42449"/>
            <exon e_start="41020" e_stop="40857"/>
            <exon e_start="40008" e_stop="39632"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="0.987"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.970"/>
          <exon-intron don_prob="0.000" acc_prob="0.479" e_score="0.961"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="42910" e_stop="42832" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="42583" e_stop="42449" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42448" i_stop="41021" i_length="1428"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="41020" e_stop="40857" e_length="164"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.479">
            <gDNA_intron_boundary i_start="40856" i_stop="40009" i_length="848"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="40008" e_stop="39632" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42908" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42449"/>
              <exon start="41020" stop="40997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40888" stop="40857"/>
              <exon start="40008" stop="39632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309651" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="17" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGG : ATTAGTGGATCCCTTGCCAGGAAGGCAATTAGGGAATTGATGGCTAAAGGTTTGATCAGGATGGTGTCTGCTCATGCTAGCCAGCAGATTTACACCCGAGCTACAAACACCTAAGGCTTTAATATTTAGAGTTTGTTGTTTATTAGCCTTCATTTTGTTTGAAA : GAATCACAAGGCAATTACGAAAGGACAAGAAAGAATGTCTACAAACAAGCTCAGAGAGATGGTATTTAGAGAACATACGCCCAGCGGCCACTTTGTAGCTCTCAAACGAGTAGGCCTATTCCGATCTATCTACACTCAGATAAACATACAGAACACCACAATTACCCTGATTTTGCCCAGCTACCACAATTCTATTTTAACAAAAGCACTGCTGTTTCTACAAACAGTAACAACATACTATGGTCCACAAAGTCCTTGATATTGCATAGATCAAGAGGCATTCTCTGAAGAAGCGACCTTGTCTTTTCCAGACTCGAGATTAATGTTGACTTGAGATTTATCACCAGTTTCATCCTGTTTCTGCTGATTATCAGTTT</gDNA_template>
            <first_frame> S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E   : D  *  W  I  P  C  Q  E  G  N  *  G  I  D  G  *  R  F  D  Q  D  G  V  C  S  C  *  P  A  D  L  H  P  S  Y  K  H  L  R  L  *  Y  L  E  F  V  V  Y  *  P  S  F  C  L  K  :  E  S  Q  G  N  Y  E  R  T  R  K  N  V  Y  K  Q  A  Q  R  D  G  I  *  R  T  Y  A  Q  R  P  L  C  S  S  Q  T  S  R  P  I  P  I  Y  L  H  S  D  K  H  T  E  H  H  N  Y  P  D  F  A  Q  L  P  Q  F  Y  F  N  K  S  T  A  V  S  T  N  S  N  N  I  L  W  S  T  K  S  L  I  L  H  R  S  R  G  I  L  *  R  S  D  L  V  F  S  R  L  E  I  N  V  D  L  R  F  I  T  S  F  I  L  F  L  L  I  I  S   </first_frame>
            <second_frame>  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  :  I  S  G  S  L  A  R  K  A  I  R  E  L  M  A  K  G  L  I  R  M  V  S  A  H  A  S  Q  Q  I  Y  T  R  A  T  N  T  *  G  F  N  I  *  S  L  L  F  I  S  L  H  F  V  *  K :   N  H  K  A  I  T  K  G  Q  E  R  M  S  T  N  K  L  R  E  M  V  F  R  E  H  T  P  S  G  H  F  V  A  L  K  R  V  G  L  F  R  S  I  Y  T  Q  I  N  I  Q  N  T  T  I  T  L  I  L  P  S  Y  H  N  S  I  L  T  K  A  L  L  F  L  Q  T  V  T  T  Y  Y  G  P  Q  S  P  *  Y  C  I  D  Q  E  A  F  S  E  E  A  T  L  S  F  P  D  S  R  L  M  L  T  *  D  L  S  P  V  S  S  C  F  C  *  L  S  V  </second_frame>
            <third_frame>   I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G :   L  V  D  P  L  P  G  R  Q  L  G  N  *  W  L  K  V  *  S  G  W  C  L  L  M  L  A  S  R  F  T  P  E  L  Q  T  P  K  A  L  I  F  R  V  C  C  L  L  A  F  I  L  F  E   : R  I  T  R  Q  L  R  K  D  K  K  E  C  L  Q  T  S  S  E  R  W  Y  L  E  N  I  R  P  A  A  T  L  *  L  S  N  E  *  A  Y  S  D  L  S  T  L  R  *  T  Y  R  T  P  Q  L  P  *  F  C  P  A  T  T  I  L  F  *  Q  K  H  C  C  F  Y  K  Q  *  Q  H  T  M  V  H  K  V  L  D  I  A  *  I  K  R  H  S  L  K  K  R  P  C  L  F  Q  T  R  D  *  C  *  L  E  I  Y  H  Q  F  H  P  V  S  A  D  Y  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="17" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42449"/>
                    <exon start="41020" stop="40907"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRISGSLARKAIRELMAKGLIRMVSAHASQQIYTRATNT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="17" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40858" stop="40857"/>
                    <exon start="40008" stop="39750"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNHKAITKGQERMSTNKLREMVFREHTPSGHFVALKRVGLFRSIYTQINIQNTTITLILPSYHNSILTKALLFLQTVTTYYGPQSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="18">
          <exon_coordinates>
            <exon e_start="42913" e_stop="42832"/>
            <exon e_start="42750" e_stop="42676"/>
            <exon e_start="42583" e_stop="42052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.927"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="0.987"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="42913" e_stop="42832" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42831" i_stop="42751" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="42750" e_stop="42676" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="42675" i_stop="42584" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="42583" e_stop="42052" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42913" stop="42832"/>
              <exon start="42750" stop="42676"/>
              <exon start="42583" stop="42140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42691" stop="42676"/>
              <exon start="42583" stop="42052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="18" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCATTCCAGTTCCTTCTTCTGTTGCCCTAGCCTCCGCCACTCCCCATCCCCTTACCCCTAATAACTTCCGGCGACAATG : GCACCTAAGAAGGAAAAGGCTCCTCCACCGTCTTCCAAGCCCGCCAAGTCCGGTGGTGGCAAGCAGAAGAAGAAG : AAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTCGATAAGGGTACATACGACAAGCTTATCACTGAAGCACCCAAGTATAAGCTTATCACTCCTTCCGTCCTCTCTGACCGTTTGAGGGTATGTGTATTCTTTTAGCATGGATCTAGTTATTATGTATTGAATATGAAGTGTGTTTTGTGCAATGTGAATATGCTTGCTTATAAGAATGAATTTTTATCAACTGTTGGTCATTTAGATTAGTTATTGAAATATATTGCTCAGGGTTCTGTGTGGTATAGTTTGTGAAGTTGTCGAATGATTCTACGGTGTTTATATTTGAATAGTTGTGTTTTACATAAACTAACTCAGCTGAAAAGCATAGCTAGTGAATTGTGGTGTTGTAGATTTTCAAAATACTCGGCAGCAGTAGTGTACGAGTCTAGCAATAGTGTATGAGTCTAATGATTTAGTTCTGGTTGAGTCGCAGCAGACAAGTTTGTTTTTGGTTTTTGGAGTACGCGTACCAAATTTCTTT</gDNA_template>
            <first_frame> S  S  F  Q  F  L  L  L  L  P  *  P  P  P  L  P  I  P  L  P  L  I  T  S  G  D  N   : G  T  *  E  G  K  G  S  S  T  V  F  Q  A  R  Q  V  R  W  W  Q  A  E  E  E   : E  V  E  Q  G  K  A  K  G  K  G  E  Q  H  G  F  V  R  *  G  Y  I  R  Q  A  Y  H  *  S  T  Q  V  *  A  Y  H  S  F  R  P  L  *  P  F  E  G  M  C  I  L  L  A  W  I  *  L  L  C  I  E  Y  E  V  C  F  V  Q  C  E  Y  A  C  L  *  E  *  I  F  I  N  C  W  S  F  R  L  V  I  E  I  Y  C  S  G  F  C  V  V  *  F  V  K  L  S  N  D  S  T  V  F  I  F  E  *  L  C  F  T  *  T  N  S  A  E  K  H  S  *  *  I  V  V  L  *  I  F  K  I  L  G  S  S  S  V  R  V  *  Q  *  C  M  S  L  M  I  *  F  W  L  S  R  S  R  Q  V  C  F  W  F  L  E  Y  A  Y  Q  I  S   </first_frame>
            <second_frame>  L  H  S  S  S  F  F  C  C  P  S  L  R  H  S  P  S  P  Y  P  *  *  L  P  A  T  M  :  A  P  K  K  E  K  A  P  P  P  S  S  K  P  A  K  S  G  G  G  K  Q  K  K  K  :  K  W  S  K  G  K  Q  K  E  K  V  N  N  M  V  L  F  D  K  G  T  Y  D  K  L  I  T  E  A  P  K  Y  K  L  I  T  P  S  V  L  S  D  R  L  R  V  C  V  F  F  *  H  G  S  S  Y  Y  V  L  N  M  K  C  V  L  C  N  V  N  M  L  A  Y  K  N  E  F  L  S  T  V  G  H  L  D  *  L  L  K  Y  I  A  Q  G  S  V  W  Y  S  L  *  S  C  R  M  I  L  R  C  L  Y  L  N  S  C  V  L  H  K  L  T  Q  L  K  S  I  A  S  E  L  W  C  C  R  F  S  K  Y  S  A  A  V  V  Y  E  S  S  N  S  V  *  V  *  *  F  S  S  G  *  V  A  A  D  K  F  V  F  G  F  W  S  T  R  T  K  F  L  </second_frame>
            <third_frame>   F  I  P  V  P  S  S  V  A  L  A  S  A  T  P  H  P  L  T  P  N  N  F  R  R  Q  W :   H  L  R  R  K  R  L  L  H  R  L  P  S  P  P  S  P  V  V  A  S  R  R  R  R :   S  G  A  R  E  S  K  R  K  R  *  T  T  W  F  C  S  I  R  V  H  T  T  S  L  S  L  K  H  P  S  I  S  L  S  L  L  P  S  S  L  T  V  *  G  Y  V  Y  S  F  S  M  D  L  V  I  M  Y  *  I  *  S  V  F  C  A  M  *  I  C  L  L  I  R  M  N  F  Y  Q  L  L  V  I  *  I  S  Y  *  N  I  L  L  R  V  L  C  G  I  V  C  E  V  V  E  *  F  Y  G  V  Y  I  *  I  V  V  F  Y  I  N  *  L  S  *  K  A  *  L  V  N  C  G  V  V  D  F  Q  N  T  R  Q  Q  *  C  T  S  L  A  I  V  Y  E  S  N  D  L  V  L  V  E  S  Q  Q  T  S  L  F  L  V  F  G  V  R  V  P  N  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="18" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42846" stop="42832"/>
                    <exon start="42750" stop="42676"/>
                    <exon start="42583" stop="42431"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPATMAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKGTYDKLITEAPKYKLITPSVLSDRLRVCVFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="56708" PGL_stop="59216"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56708" e_stop="56864"/>
            <exon e_start="56969" e_stop="57157"/>
            <exon e_start="57267" e_stop="57347"/>
            <exon e_start="57430" e_stop="57564"/>
            <exon e_start="57822" e_stop="58147"/>
            <exon e_start="58439" e_stop="58553"/>
            <exon e_start="58673" e_stop="58822"/>
            <exon e_start="59047" e_stop="59216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.819" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.988"/>
          <exon-intron don_prob="0.730" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.992" e_score="0.985"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56708" e_stop="56864" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56865" i_stop="56968" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56969" e_stop="57157" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.819">
            <gDNA_intron_boundary i_start="57158" i_stop="57266" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="57267" e_stop="57347" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57348" i_stop="57429" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57430" e_stop="57564" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.730" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57565" i_stop="57821" i_length="257"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="57822" e_stop="58147" e_length="326"/>
          </exon>
          <intron i_serial="5" don_prob="0.903" acc_prob="0.992">
            <gDNA_intron_boundary i_start="58148" i_stop="58438" i_length="291"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58439" e_stop="58553" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58554" i_stop="58672" i_length="119"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58673" e_stop="58822" e_length="150"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58823" i_stop="59046" i_length="224"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="59047" e_stop="59216" e_length="170"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56708" stop="56864"/>
              <exon start="56969" stop="57157"/>
              <exon start="57267" stop="57347"/>
              <exon start="57430" stop="57564"/>
              <exon start="57822" stop="58044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56709" stop="56864"/>
              <exon start="56969" stop="57157"/>
              <exon start="57267" stop="57347"/>
              <exon start="57430" stop="57564"/>
              <exon start="57822" stop="57884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57338" stop="57347"/>
              <exon start="57430" stop="57564"/>
              <exon start="57822" stop="58147"/>
              <exon start="58439" stop="58539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58016" stop="58147"/>
              <exon start="58439" stop="58553"/>
              <exon start="58673" stop="58822"/>
              <exon start="59047" stop="59216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGGTTGGACAATTATGGGTAGTGATGGTGTTGATGATGTAACAATTGCTGTAAACTCATCACCAAGTAAATTCCTTGATGCACAATACAACACCTTGTCAATTCTCCCTACTTTTGGAGGAGTACTGTGTGCACGGGCATCAATGCTTCTTCAG : GATGTTTGCCCTGCTTTGCTTGTCCGTTTCCTTAGGGAGCACCGTTCGGAGTGGGCTGACTATGGAGTTGATGCTTACTCTTCTGCATCTCTTAAAGCCAGTCCTTATGCTGTCCCTTGTGCCAGACCTGGTGTCTTCCCCAGTAGCCAGGTCATTTTACCGCTTGCTCAGACTGTGGAACATGAGGAG : TTTCTTGAGGTTGTTCGGCTAGAGGGTCATGCTTTCTCTCCAGAGGACATAGCTTTATCGCGGGATATGTATTTGTTACAG : CTATGCAGTGGAGTTGAAGAGAATGCCACAGGTGCCTGTGCGCAGCTTGTTTTTGCACATATTGATGAATCTTTTGGTGATGATGCTCCATTGCTTCCATCTGGTTTCTCTGTCATTCCACTGGAGCCTAAATCA : GATTCTCCTAGTGCTGCTCGGACTTTAGATTTAGCTTCAACTCTTGAAGCTAGAACTGGTGGGACACGGCCAGCTGGTGAAGTTGAAGGAAGCAGTTACAACCATCGTTCAGTCTTGACAATTGCATTCCAGTTTGCCTTTGAGAATCACTATCGAGAAAATGTAGCTGCTATGGCTCGCCAATATGTACGAAGCATTGTAGGCTCTGTTCAGAGAGTTGCTATGGCTATTGCACCCTCTCGACTCTGCTCTCAGTTGACACCTAAATCCTTCCCTGGTTCACCAGAAGCTGTCACTTTGGCGAGATGGATTTGCAGGAGCTATAA : GAATCATACTGGTGGAGAATTGCTACAGATGGATTCTCAAGCTGCCGGTGATGCTGTTCTGAAGCAACTATGGCATCATACTGATTCAATAATGTGCTGCTCCGTCAAAATGAAT : GATTCTGCATTTTTTTCATTTGCAAACCAAGCAGGACTTGACATGCTTGAAACCACTCTAATAGCTCTTCAGGATATAATGCTTGATAAGATCCTAGATGAAGCTGGTCGAAAGGTCCTCCTTTCAGAGTTCCCCAAGATTATGCAGCAG : GGCTTTGCTTATCTGCCAGCAGGGCTATGTGTATCGAGCATGGGGAGGCCAGTGTCGTACGAGCAAGCTGTTGCATGGAAGGTCCTTAATGATGACAACTCCAATCACTGCCTAGCTTTCATGTTCACAAACTGGTCTTTTATTTAAGTTCAAAACATATGATCTGCGTA</gDNA_template>
            <first_frame> *  W  L  D  N  Y  G  *  *  W  C  *  *  C  N  N  C  C  K  L  I  T  K  *  I  P  *  C  T  I  Q  H  L  V  N  S  P  Y  F  W  R  S  T  V  C  T  G  I  N  A  S  S   : G  C  L  P  C  F  A  C  P  F  P  *  G  A  P  F  G  V  G  *  L  W  S  *  C  L  L  F  C  I  S  *  S  Q  S  L  C  C  P  L  C  Q  T  W  C  L  P  Q  *  P  G  H  F  T  A  C  S  D  C  G  T  *  G   : V  S  *  G  C  S  A  R  G  S  C  F  L  S  R  G  H  S  F  I  A  G  Y  V  F  V  T   : A  M  Q  W  S  *  R  E  C  H  R  C  L  C  A  A  C  F  C  T  Y  *  *  I  F  W  *  *  C  S  I  A  S  I  W  F  L  C  H  S  T  G  A  *  I   : R  F  S  *  C  C  S  D  F  R  F  S  F  N  S  *  S  *  N  W  W  D  T  A  S  W  *  S  *  R  K  Q  L  Q  P  S  F  S  L  D  N  C  I  P  V  C  L  *  E  S  L  S  R  K  C  S  C  Y  G  S  P  I  C  T  K  H  C  R  L  C  S  E  S  C  Y  G  Y  C  T  L  S  T  L  L  S  V  D  T  *  I  L  P  W  F  T  R  S  C  H  F  G  E  M  D  L  Q  E  L  *  :  E  S  Y  W  W  R  I  A  T  D  G  F  S  S  C  R  *  C  C  S  E  A  T  M  A  S  Y  *  F  N  N  V  L  L  R  Q  N  E   : *  F  C  I  F  F  I  C  K  P  S  R  T  *  H  A  *  N  H  S  N  S  S  S  G  Y  N  A  *  *  D  P  R  *  S  W  S  K  G  P  P  F  R  V  P  Q  D  Y  A  A   : G  L  C  L  S  A  S  R  A  M  C  I  E  H  G  E  A  S  V  V  R  A  S  C  C  M  E  G  P  *  *  *  Q  L  Q  S  L  P  S  F  H  V  H  K  L  V  F  Y  L  S  S  K  H  M  I  C  V </first_frame>
            <second_frame>  D  G  W  T  I  M  G  S  D  G  V  D  D  V  T  I  A  V  N  S  S  P  S  K  F  L  D  A  Q  Y  N  T  L  S  I  L  P  T  F  G  G  V  L  C  A  R  A  S  M  L  L  Q  :  D  V  C  P  A  L  L  V  R  F  L  R  E  H  R  S  E  W  A  D  Y  G  V  D  A  Y  S  S  A  S  L  K  A  S  P  Y  A  V  P  C  A  R  P  G  V  F  P  S  S  Q  V  I  L  P  L  A  Q  T  V  E  H  E  E  :  F  L  E  V  V  R  L  E  G  H  A  F  S  P  E  D  I  A  L  S  R  D  M  Y  L  L  Q  :  L  C  S  G  V  E  E  N  A  T  G  A  C  A  Q  L  V  F  A  H  I  D  E  S  F  G  D  D  A  P  L  L  P  S  G  F  S  V  I  P  L  E  P  K  S  :  D  S  P  S  A  A  R  T  L  D  L  A  S  T  L  E  A  R  T  G  G  T  R  P  A  G  E  V  E  G  S  S  Y  N  H  R  S  V  L  T  I  A  F  Q  F  A  F  E  N  H  Y  R  E  N  V  A  A  M  A  R  Q  Y  V  R  S  I  V  G  S  V  Q  R  V  A  M  A  I  A  P  S  R  L  C  S  Q  L  T  P  K  S  F  P  G  S  P  E  A  V  T  L  A  R  W  I  C  R  S  Y  K :   N  H  T  G  G  E  L  L  Q  M  D  S  Q  A  A  G  D  A  V  L  K  Q  L  W  H  H  T  D  S  I  M  C  C  S  V  K  M  N  :  D  S  A  F  F  S  F  A  N  Q  A  G  L  D  M  L  E  T  T  L  I  A  L  Q  D  I  M  L  D  K  I  L  D  E  A  G  R  K  V  L  L  S  E  F  P  K  I  M  Q  Q  :  G  F  A  Y  L  P  A  G  L  C  V  S  S  M  G  R  P  V  S  Y  E  Q  A  V  A  W  K  V  L  N  D  D  N  S  N  H  C  L  A  F  M  F  T  N  W  S  F  I  *  V  Q  N  I  *  S  A   </second_frame>
            <third_frame>   M  V  G  Q  L  W  V  V  M  V  L  M  M  *  Q  L  L  *  T  H  H  Q  V  N  S  L  M  H  N  T  T  P  C  Q  F  S  L  L  L  E  E  Y  C  V  H  G  H  Q  C  F  F  R :   M  F  A  L  L  C  L  S  V  S  L  G  S  T  V  R  S  G  L  T  M  E  L  M  L  T  L  L  H  L  L  K  P  V  L  M  L  S  L  V  P  D  L  V  S  S  P  V  A  R  S  F  Y  R  L  L  R  L  W  N  M  R  S :   F  L  R  L  F  G  *  R  V  M  L  S  L  Q  R  T  *  L  Y  R  G  I  C  I  C  Y  S :   Y  A  V  E  L  K  R  M  P  Q  V  P  V  R  S  L  F  L  H  I  L  M  N  L  L  V  M  M  L  H  C  F  H  L  V  S  L  S  F  H  W  S  L  N  Q :   I  L  L  V  L  L  G  L  *  I  *  L  Q  L  L  K  L  E  L  V  G  H  G  Q  L  V  K  L  K  E  A  V  T  T  I  V  Q  S  *  Q  L  H  S  S  L  P  L  R  I  T  I  E  K  M  *  L  L  W  L  A  N  M  Y  E  A  L  *  A  L  F  R  E  L  L  W  L  L  H  P  L  D  S  A  L  S  *  H  L  N  P  S  L  V  H  Q  K  L  S  L  W  R  D  G  F  A  G  A  I   : R  I  I  L  V  E  N  C  Y  R  W  I  L  K  L  P  V  M  L  F  *  S  N  Y  G  I  I  L  I  Q  *  C  A  A  P  S  K  *  M :   I  L  H  F  F  H  L  Q  T  K  Q  D  L  T  C  L  K  P  L  *  *  L  F  R  I  *  C  L  I  R  S  *  M  K  L  V  E  R  S  S  F  Q  S  S  P  R  L  C  S  R :   A  L  L  I  C  Q  Q  G  Y  V  Y  R  A  W  G  G  Q  C  R  T  S  K  L  L  H  G  R  S  L  M  M  T  T  P  I  T  A  *  L  S  C  S  Q  T  G  L  L  F  K  F  K  T  Y  D  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56709" stop="56864"/>
                    <exon start="56969" stop="57157"/>
                    <exon start="57267" stop="57347"/>
                    <exon start="57430" stop="57564"/>
                    <exon start="57822" stop="58147"/>
                    <exon start="58439" stop="58553"/>
                    <exon start="58673" stop="58822"/>
                    <exon start="59047" stop="59193"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1296</number_coding_nucleotides>
                  <number_encoded_amino_acids>432</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGWTIMGSDGVDDVTIAVNSSPSKFLDAQYNTLSILPTFGGVLCARASMLLQDVCPALLVRFLREHRSEWADYGVDAYSSASLKASPYAVPCARPGVFPSSQVILPLAQTVEHEEFLEVVRLEGHAFSPEDIALSRDMYLLQLCSGVEENATGACAQLVFAHIDESFGDDAPLLPSGFSVIPLEPKSDSPSAARTLDLASTLEARTGGTRPAGEVEGSSYNHRSVLTIAFQFAFENHYRENVAAMARQYVRSIVGSVQRVAMAIAPSRLCSQLTPKSFPGSPEAVTLARWICRSYKNHTGGELLQMDSQAAGDAVLKQLWHHTDSIMCCSVKMNDSAFFSFANQAGLDMLETTLIALQDIMLDKILDEAGRKVLLSEFPKIMQQGFAYLPAGLCVSSMGRPVSYEQAVAWKVLNDDNSNHCLAFMFTNWSFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="61470" PGL_stop="64913"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61470" e_stop="61589"/>
            <exon e_start="64206" e_stop="64358"/>
            <exon e_start="64553" e_stop="64913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="0.975"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.987"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="61470" e_stop="61589" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61590" i_stop="64205" i_length="2616"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="64206" e_stop="64358" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64359" i_stop="64552" i_length="194"/>
          </intron>
          <exon e_serial="3" e_score="0.922">
            <gDNA_exon_boundary e_start="64553" e_stop="64913" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61470" stop="61589"/>
              <exon start="64206" stop="64358"/>
              <exon start="64553" stop="64913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605239" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61470" stop="61589"/>
              <exon start="64206" stop="64358"/>
              <exon start="64553" stop="64909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605153" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATGGAGGAAACAGAGAAAGAATCCATCAAATCTGCATCCGAAGAGATTTCCAGTGAATTCAAAACCCTAATCAACGCTAAGGATTTGGATTCTTTGAAGCAATTGCAAAACCTCAT : ATTGGGACGGTTGCAGGACAGCAATGCAGTCCTTTCTCACTTCAATGAGTACTCAGAACATTGTTACGCAGAGGTCTCGGCAGATTTCTCTAGAAATACACGTCTCTTAAAATCTATGAAGTCAGACCTTGATTACATATTTCTGAAGTTGAG : GAACATGAAGGCAAAAATCATATCAACGTACCCAGATGCTCTTCCAGACAATACAACTATTCAGGCACTTGATCAAAGGCCTGATCTTGAAATGCCACAATAAGTAAGTTTGGTAATGTAAATGGTGGGGAAATGTTTGGCTTCTTCTATTTCTTCCTTTGCAAGTATGGAAAAGCTGGTTTAGGGTGGATAGTCTCAACTGTTTTTATCTGATAGTTCTGCAGCTGTATACTTCAAGTCGCGTTATGATAAGTTGTGGTCTCTCCTGAACAGTAGTTGTGCTTCGATTTGTGCTTTGCATATACCTTTTCGGGGGCAAGGCATGGATCTGTTTATCGTAAGGATTCTGAGTTTTCGATTA</gDNA_template>
            <first_frame> K  N  G  G  N  R  E  R  I  H  Q  I  C  I  R  R  D  F  Q  *  I  Q  N  P  N  Q  R  *  G  F  G  F  F  E  A  I  A  K  P  H  :  I  G  T  V  A  G  Q  Q  C  S  P  F  S  L  Q  *  V  L  R  T  L  L  R  R  G  L  G  R  F  L  *  K  Y  T  S  L  K  I  Y  E  V  R  P  *  L  H  I  S  E  V  E  :  E  H  E  G  K  N  H  I  N  V  P  R  C  S  S  R  Q  Y  N  Y  S  G  T  *  S  K  A  *  S  *  N  A  T  I  S  K  F  G  N  V  N  G  G  E  M  F  G  F  F  Y  F  F  L  C  K  Y  G  K  A  G  L  G  W  I  V  S  T  V  F  I  *  *  F  C  S  C  I  L  Q  V  A  L  *  *  V  V  V  S  P  E  Q  *  L  C  F  D  L  C  F  A  Y  T  F  S  G  A  R  H  G  S  V  Y  R  K  D  S  E  F  S  I  </first_frame>
            <second_frame>  K  M  E  E  T  E  K  E  S  I  K  S  A  S  E  E  I  S  S  E  F  K  T  L  I  N  A  K  D  L  D  S  L  K  Q  L  Q  N  L  I :   L  G  R  L  Q  D  S  N  A  V  L  S  H  F  N  E  Y  S  E  H  C  Y  A  E  V  S  A  D  F  S  R  N  T  R  L  L  K  S  M  K  S  D  L  D  Y  I  F  L  K  L  R :   N  M  K  A  K  I  I  S  T  Y  P  D  A  L  P  D  N  T  T  I  Q  A  L  D  Q  R  P  D  L  E  M  P  Q  *  V  S  L  V  M  *  M  V  G  K  C  L  A  S  S  I  S  S  F  A  S  M  E  K  L  V  *  G  G  *  S  Q  L  F  L  S  D  S  S  A  A  V  Y  F  K  S  R  Y  D  K  L  W  S  L  L  N  S  S  C  A  S  I  C  A  L  H  I  P  F  R  G  Q  G  M  D  L  F  I  V  R  I  L  S  F  R  L </second_frame>
            <third_frame>   K  W  R  K  Q  R  K  N  P  S  N  L  H  P  K  R  F  P  V  N  S  K  P  *  S  T  L  R  I  W  I  L  *  S  N  C  K  T  S   : Y  W  D  G  C  R  T  A  M  Q  S  F  L  T  S  M  S  T  Q  N  I  V  T  Q  R  S  R  Q  I  S  L  E  I  H  V  S  *  N  L  *  S  Q  T  L  I  T  Y  F  *  S  *   : G  T  *  R  Q  K  S  Y  Q  R  T  Q  M  L  F  Q  T  I  Q  L  F  R  H  L  I  K  G  L  I  L  K  C  H  N  K  *  V  W  *  C  K  W  W  G  N  V  W  L  L  L  F  L  P  L  Q  V  W  K  S  W  F  R  V  D  S  L  N  C  F  Y  L  I  V  L  Q  L  Y  T  S  S  R  V  M  I  S  C  G  L  S  *  T  V  V  V  L  R  F  V  L  C  I  Y  L  F  G  G  K  A  W  I  C  L  S  *  G  F  *  V  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61471" stop="61589"/>
                    <exon start="64206" stop="64358"/>
                    <exon start="64553" stop="64655"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEETEKESIKSASEEISSEFKTLINAKDLDSLKQLQNLILGRLQDSNAVLSHFNEYSEHCYAEVSADFSRNTRLLKSMKSDLDYIFLKLRNMKAKIISTYPDALPDNTTIQALDQRPDLEMPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="85631" PGL_stop="92475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89616" e_stop="90956"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="89616" e_stop="90956" e_length="1341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89616" stop="90368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89662" stop="90596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89662" stop="90530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89662" stop="90530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89662" stop="90494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89662" stop="90468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89668" stop="90431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89672" stop="90492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89673" stop="90562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89675" stop="90070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89676" stop="90072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89683" stop="90391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89686" stop="90131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89686" stop="90131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89687" stop="90070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89690" stop="90221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89691" stop="90530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89695" stop="90131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89695" stop="89959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89696" stop="90353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89696" stop="90350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89702" stop="90364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89702" stop="90273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89716" stop="90390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89716" stop="90238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89749" stop="90241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89801" stop="90262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89968" stop="90690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89997" stop="90526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90000" stop="90548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90221" stop="90956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90249" stop="90956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90380" stop="90956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCCCCCACAATTATAAATAACCCATATTCATGCAAATTTATAGTATACCCAAGAAAAAATAAAATTTTTCATAATTTGTGTTTATTTTACTTTTTAGAAATTTCCTAAAATGGTTCATGATAAGCAAGTTAAAGATGTAGTTTCCGGTTGGCTTACAGTTTTTGACGACGGTTCAGTAGACCGGACATGGACTGGTCCACCTGAAGTCAAGTTCATGGCTGAGCCTGTTCCACCGCATGACGACTTCATTGACGGCGTTGCCGTCAAAGATGTGGTCGCCGGGGAGAATTCCGGTAGTCGTTTCCGTATTTACTTACCTGAACGTAATGATAGTTCGGTTGATAAGCTTCCCGTCATTCTTCACTTCCACGGCGGTGGTTTTTGTATCAGCCAAGCTGATTGGTTCATGTACTATGCTGTCTACACTCGCTTAGCGCGTGTGGCAAACGCTATTGTTGTTTCCGTCTTCCTACCTCTGGCGCCGGAGCACCGCCTCCCTGCCGCTTGTGATGCCGGCTTCGCCGGCCTCCTCTGGCTCCGTGACGTATCCCGGGAACAAGGTCACGAGCCCTGGCTCAACGAATACGCCGATTTCAACCGCGTATTCCTCATCGGAGACAGCTCCGGCGGAAACGTCGTCCATCAAGTTGCCGCCAGAGCCGGAGAAGAAGACTTATCTCCGATGAAGCTCGCCGGCGCAATCCCGATCCATCCAGGCTTCATGCGATCCCAGCGAAGCAAATCGGAGCTAGAACAGGAACAAACCCCCTTTCTAACCTTAGATATGGTGGATAAATTTATGGAACTGGCTTTACCGATTGGTAGCACTAAGGATCACCCGATCACTTGTCCGATGGGTGATGCGGCACCGGCGGTGGAGGAGCTGAAATTGCCGCCTTACTTGTACTGTGTAGCGGAGAAGGATCTGATAAAAGACACTGAAATGGAATTTTACGAATCACTGAAAACAGGGGAAAAAGATGTTGAACTGTTGATTAACAATGGCGTGGGACACAGTTTTTACCTGAACAAAATTGCTGTTGATATGGACCCTGTTACTGGTTCTGCAACTGAAAAGCTTTTTGAAGCCATTGCAGAGTTCATCAACAAGCACTGATCAAATGAGAAATTAATTTACTATAAGATTTATGAGTGCAAATAAGCATGATATTTTATGAGAATTTTTTTGCATGCTGAACATCTGAAACGATTGTATCGTATTGTTAGTTTAAATATTCATGTTTGTTTTGATGATTGTTATTTTAACTATATTGTATCCAATTATAAAATATTAAAATTTCATAATAATCGATATGATCGGACTACATCTTTATCATA</gDNA_template>
            <first_frame> F  S  P  T  I  I  N  N  P  Y  S  C  K  F  I  V  Y  P  R  K  N  K  I  F  H  N  L  C  L  F  Y  F  L  E  I  S  *  N  G  S  *  *  A  S  *  R  C  S  F  R  L  A  Y  S  F  *  R  R  F  S  R  P  D  M  D  W  S  T  *  S  Q  V  H  G  *  A  C  S  T  A  *  R  L  H  *  R  R  C  R  Q  R  C  G  R  R  G  E  F  R  *  S  F  P  Y  L  L  T  *  T  *  *  *  F  G  *  *  A  S  R  H  S  S  L  P  R  R  W  F  L  Y  Q  P  S  *  L  V  H  V  L  C  C  L  H  S  L  S  A  C  G  K  R  Y  C  C  F  R  L  P  T  S  G  A  G  A  P  P  P  C  R  L  *  C  R  L  R  R  P  P  L  A  P  *  R  I  P  G  T  R  S  R  A  L  A  Q  R  I  R  R  F  Q  P  R  I  P  H  R  R  Q  L  R  R  K  R  R  P  S  S  C  R  Q  S  R  R  R  R  L  I  S  D  E  A  R  R  R  N  P  D  P  S  R  L  H  A  I  P  A  K  Q  I  G  A  R  T  G  T  N  P  L  S  N  L  R  Y  G  G  *  I  Y  G  T  G  F  T  D  W  *  H  *  G  S  P  D  H  L  S  D  G  *  C  G  T  G  G  G  G  A  E  I  A  A  L  L  V  L  C  S  G  E  G  S  D  K  R  H  *  N  G  I  L  R  I  T  E  N  R  G  K  R  C  *  T  V  D  *  Q  W  R  G  T  Q  F  L  P  E  Q  N  C  C  *  Y  G  P  C  Y  W  F  C  N  *  K  A  F  *  S  H  C  R  V  H  Q  Q  A  L  I  K  *  E  I  N  L  L  *  D  L  *  V  Q  I  S  M  I  F  Y  E  N  F  F  A  C  *  T  S  E  T  I  V  S  Y  C  *  F  K  Y  S  C  L  F  *  *  L  L  F  *  L  Y  C  I  Q  L  *  N  I  K  I  S  *  *  S  I  *  S  D  Y  I  F  I  I </first_frame>
            <second_frame>  F  P  P  Q  L  *  I  T  H  I  H  A  N  L  *  Y  T  Q  E  K  I  K  F  F  I  I  C  V  Y  F  T  F  *  K  F  P  K  M  V  H  D  K  Q  V  K  D  V  V  S  G  W  L  T  V  F  D  D  G  S  V  D  R  T  W  T  G  P  P  E  V  K  F  M  A  E  P  V  P  P  H  D  D  F  I  D  G  V  A  V  K  D  V  V  A  G  E  N  S  G  S  R  F  R  I  Y  L  P  E  R  N  D  S  S  V  D  K  L  P  V  I  L  H  F  H  G  G  G  F  C  I  S  Q  A  D  W  F  M  Y  Y  A  V  Y  T  R  L  A  R  V  A  N  A  I  V  V  S  V  F  L  P  L  A  P  E  H  R  L  P  A  A  C  D  A  G  F  A  G  L  L  W  L  R  D  V  S  R  E  Q  G  H  E  P  W  L  N  E  Y  A  D  F  N  R  V  F  L  I  G  D  S  S  G  G  N  V  V  H  Q  V  A  A  R  A  G  E  E  D  L  S  P  M  K  L  A  G  A  I  P  I  H  P  G  F  M  R  S  Q  R  S  K  S  E  L  E  Q  E  Q  T  P  F  L  T  L  D  M  V  D  K  F  M  E  L  A  L  P  I  G  S  T  K  D  H  P  I  T  C  P  M  G  D  A  A  P  A  V  E  E  L  K  L  P  P  Y  L  Y  C  V  A  E  K  D  L  I  K  D  T  E  M  E  F  Y  E  S  L  K  T  G  E  K  D  V  E  L  L  I  N  N  G  V  G  H  S  F  Y  L  N  K  I  A  V  D  M  D  P  V  T  G  S  A  T  E  K  L  F  E  A  I  A  E  F  I  N  K  H  *  S  N  E  K  L  I  Y  Y  K  I  Y  E  C  K  *  A  *  Y  F  M  R  I  F  L  H  A  E  H  L  K  R  L  Y  R  I  V  S  L  N  I  H  V  C  F  D  D  C  Y  F  N  Y  I  V  S  N  Y  K  I  L  K  F  H  N  N  R  Y  D  R  T  T  S  L  S   </second_frame>
            <third_frame>   F  P  H  N  Y  K  *  P  I  F  M  Q  I  Y  S  I  P  K  K  K  *  N  F  S  *  F  V  F  I  L  L  F  R  N  F  L  K  W  F  M  I  S  K  L  K  M  *  F  P  V  G  L  Q  F  L  T  T  V  Q  *  T  G  H  G  L  V  H  L  K  S  S  S  W  L  S  L  F  H  R  M  T  T  S  L  T  A  L  P  S  K  M  W  S  P  G  R  I  P  V  V  V  S  V  F  T  Y  L  N  V  M  I  V  R  L  I  S  F  P  S  F  F  T  S  T  A  V  V  F  V  S  A  K  L  I  G  S  C  T  M  L  S  T  L  A  *  R  V  W  Q  T  L  L  L  F  P  S  S  Y  L  W  R  R  S  T  A  S  L  P  L  V  M  P  A  S  P  A  S  S  G  S  V  T  Y  P  G  N  K  V  T  S  P  G  S  T  N  T  P  I  S  T  A  Y  S  S  S  E  T  A  P  A  E  T  S  S  I  K  L  P  P  E  P  E  K  K  T  Y  L  R  *  S  S  P  A  Q  S  R  S  I  Q  A  S  C  D  P  S  E  A  N  R  S  *  N  R  N  K  P  P  F  *  P  *  I  W  W  I  N  L  W  N  W  L  Y  R  L  V  A  L  R  I  T  R  S  L  V  R  W  V  M  R  H  R  R  W  R  S  *  N  C  R  L  T  C  T  V  *  R  R  R  I  *  *  K  T  L  K  W  N  F  T  N  H  *  K  Q  G  K  K  M  L  N  C  *  L  T  M  A  W  D  T  V  F  T  *  T  K  L  L  L  I  W  T  L  L  L  V  L  Q  L  K  S  F  L  K  P  L  Q  S  S  S  T  S  T  D  Q  M  R  N  *  F  T  I  R  F  M  S  A  N  K  H  D  I  L  *  E  F  F  C  M  L  N  I  *  N  D  C  I  V  L  L  V  *  I  F  M  F  V  L  M  I  V  I  L  T  I  L  Y  P  I  I  K  Y  *  N  F  I  I  I  D  M  I  G  L  H  L  Y  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89716" stop="90735"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFPKMVHDKQVKDVVSGWLTVFDDGSVDRTWTGPPEVKFMAEPVPPHDDFIDGVAVKDVVAGENSGSRFRIYLPERNDSSVDKLPVILHFHGGGFCISQADWFMYYAVYTRLARVANAIVVSVFLPLAPEHRLPAACDAGFAGLLWLRDVSREQGHEPWLNEYADFNRVFLIGDSSGGNVVHQVAARAGEEDLSPMKLAGAIPIHPGFMRSQRSKSELEQEQTPFLTLDMVDKFMELALPIGSTKDHPITCPMGDAAPAVEELKLPPYLYCVAEKDLIKDTEMEFYESLKTGEKDVELLINNGVGHSFYLNKIAVDMDPVTGSATEKLFEAIAEFINKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="85631" e_stop="85647"/>
            <exon e_start="92112" e_stop="92475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.882"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.882">
            <gDNA_exon_boundary e_start="85631" e_stop="85647" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85648" i_stop="92111" i_length="6464"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="92112" e_stop="92475" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85631" stop="85647"/>
              <exon start="92112" stop="92475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239389" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85631" stop="85647"/>
              <exon start="92112" stop="92471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238903" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTTTTTTACTT : GAACCAACGGTAAAACAATAATTCTCTAATATCTTGCATTACAATGAAAACTAAGGACCCAAACCAATTTCCCTCAAGAGTAATAATGTGAAGTTTTTCGATACATAGCTTTGTGTAAACTTGAGACGATAGGTACAAGGAGATGTATCACGTAAGGCACGCTAAACAAGCTTGCAAAATTACAGTCCCGGTTAAAAAATAAAGAGAAGTTACATTTGGACAATAACTGTTTGGTCAAAAGCCAGGAATTTCTCCTGGCATGGGAGCTAATTCGTTATTGCCAAACCTCTCCTCGTCGTAGAAACAGGCATGAACAATCCTACCGCCAAAAAATCGACCTTCAAGTTCTATAAGGGCTTTAGTT</gDNA_template>
            <first_frame> F  F  F  F  Y  L :   N  Q  R  *  N  N  N  S  L  I  S  C  I  T  M  K  T  K  D  P  N  Q  F  P  S  R  V  I  M  *  S  F  S  I  H  S  F  V  *  T  *  D  D  R  Y  K  E  M  Y  H  V  R  H  A  K  Q  A  C  K  I  T  V  P  V  K  K  *  R  E  V  T  F  G  Q  *  L  F  G  Q  K  P  G  I  S  P  G  M  G  A  N  S  L  L  P  N  L  S  S  S  *  K  Q  A  *  T  I  L  P  P  K  N  R  P  S  S  S  I  R  A  L  V </first_frame>
            <second_frame>  F  F  F  F  T   : *  T  N  G  K  T  I  I  L  *  Y  L  A  L  Q  *  K  L  R  T  Q  T  N  F  P  Q  E  *  *  C  E  V  F  R  Y  I  A  L  C  K  L  E  T  I  G  T  R  R  C  I  T  *  G  T  L  N  K  L  A  K  L  Q  S  R  L  K  N  K  E  K  L  H  L  D  N  N  C  L  V  K  S  Q  E  F  L  L  A  W  E  L  I  R  Y  C  Q  T  S  P  R  R  R  N  R  H  E  Q  S  Y  R  Q  K  I  D  L  Q  V  L  *  G  L  *   </second_frame>
            <third_frame>   F  F  F  L  L  :  E  P  T  V  K  Q  *  F  S  N  I  L  H  Y  N  E  N  *  G  P  K  P  I  S  L  K  S  N  N  V  K  F  F  D  T  *  L  C  V  N  L  R  R  *  V  Q  G  D  V  S  R  K  A  R  *  T  S  L  Q  N  Y  S  P  G  *  K  I  K  R  S  Y  I  W  T  I  T  V  W  S  K  A  R  N  F  S  W  H  G  S  *  F  V  I  A  K  P  L  L  V  V  E  T  G  M  N  N  P  T  A  K  K  S  T  F  K  F  Y  K  G  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92267" stop="92464"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTLNKLAKLQSRLKNKEKLHLDNNCLVKSQEFLLAWELIRYCQTSPRRRNRHEQSYRQKIDLQVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="88506" PGL_stop="87910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88506" e_stop="87910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="88506" e_stop="87910" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88506" stop="87910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88480" stop="87929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTCTCTCTCTCATGGTTATCTTTTATGATTTTCCTCCAACATTCAAGTTGCAAATATCTTTTTGCCATATATTTTGATTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCCAATTTTATTTTTGTTTAAATATTAAAAAAATGTTATTTGTATTTTTCAACTTCCGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTATTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATAAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTTAAAACACAAATGTAGAATCTTTGTCTACTCGTGAGGATCTTGAAAAAAACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTCTTTTTTAGAATTT</gDNA_template>
            <first_frame> K  I  I  L  S  H  I  Y  L  F  K  L  L  I  L  S  P  I  *  F  S  L  S  H  G  Y  L  L  *  F  S  S  N  I  Q  V  A  N  I  F  L  P  Y  I  L  I  V  F  L  I  Q  N  *  I  N  K  N  P  F  D  *  G  I  S  N  L  Y  P  I  F  R  F  L  F  Q  F  Y  F  C  L  N  I  K  K  M  L  F  V  F  F  N  F  R  Y  D  L  L  S  N  G  *  I  Q  E  T  Y  *  R  Y  S  S  *  S  T  N  F  W  *  F  F  I  L  *  F  I  Y  Y  L  T  N  S  V  *  C  M  I  R  C  *  N  K  G  R  K  R  V  R  T  F  T  R  L  I  G  V  Q  N  L  P  Q  I  *  N  T  N  V  E  S  L  S  T  R  E  D  L  E  K  N  D  E  D  R  E  Q  F  S  I  S  L  F  C  I  Y  S  S  F  L  E  F </first_frame>
            <second_frame>  K  L  F  S  L  I  F  I  F  S  N  C  *  F  S  L  P  F  N  F  L  S  L  M  V  I  F  Y  D  F  P  P  T  F  K  L  Q  I  S  F  C  H  I  F  *  L  F  F  *  S  K  I  E  S  T  R  I  P  L  I  K  V  S  L  I  F  I  L  F  S  D  F  F  S  N  F  I  F  V  *  I  L  K  K  C  Y  L  Y  F  S  T  S  V  M  I  Y  S  P  M  A  E  S  K  R  L  T  R  G  I  H  L  N  Q  P  I  S  G  D  F  S  S  F  N  L  F  I  I  *  Q  I  V  Y  N  V  *  S  A  A  K  I  R  E  E  R  G  *  E  H  L  Q  D  S  L  V  C  K  T  F  L  K  F  K  T  Q  M  *  N  L  C  L  L  V  R  I  L  K  K  T  T  K  I  A  N  N  F  L  L  V  C  F  V  F  I  V  L  F  *  N   </second_frame>
            <third_frame>   N  Y  S  L  S  Y  L  S  F  Q  I  V  N  S  L  S  H  L  I  F  S  L  S  W  L  S  F  M  I  F  L  Q  H  S  S  C  K  Y  L  F  A  I  Y  F  D  C  F  F  N  P  K  L  N  Q  Q  E  S  L  *  L  R  Y  L  *  S  L  S  Y  F  Q  I  S  F  P  I  L  F  L  F  K  Y  *  K  N  V  I  C  I  F  Q  L  P  L  *  F  T  L  Q  W  L  N  P  R  D  L  L  E  V  F  I  L  I  N  Q  F  L  V  I  F  H  P  L  I  Y  L  L  F  N  K  *  C  I  M  Y  D  P  L  L  K  *  G  K  K  E  G  K  N  I  Y  K  T  H  W  C  A  K  P  S  S  N  L  K  H  K  C  R  I  F  V  Y  S  *  G  S  *  K  K  R  R  R  S  R  T  I  F  Y  *  F  V  L  Y  L  *  F  F  F  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0162I09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="96122" PGL_stop="91634"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96122" e_stop="95211"/>
            <exon e_start="92639" e_stop="92108"/>
            <exon e_start="91654" e_stop="91634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="0.810"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96122" e_stop="95211" e_length="912"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95210" i_stop="92640" i_length="2571"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="92639" e_stop="92108" e_length="532"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92107" i_stop="91655" i_length="453"/>
          </intron>
          <exon e_serial="3" e_score="0.810">
            <gDNA_exon_boundary e_start="91654" e_stop="91634" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96122" stop="95442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96122" stop="95533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96122" stop="95555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96122" stop="95633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96107" stop="95617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96106" stop="95625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96091" stop="95303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95522" stop="95211"/>
              <exon start="92639" stop="92410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95504" stop="95211"/>
              <exon start="92639" stop="92189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95473" stop="95211"/>
              <exon start="92639" stop="92382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95333" stop="95211"/>
              <exon start="92639" stop="92175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95269" stop="95211"/>
              <exon start="92639" stop="92108"/>
              <exon start="91654" stop="91634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95233" stop="95211"/>
              <exon start="92639" stop="92121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301258" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTCCGATCGCTTTCCGTTACAATGCTCGGCGGCTTATACGGCGATCTCCCTCCGCCGTCGTCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTTGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAATTGAATATTTCAGGTGAGGAGGCATGGAGGCGGAGGGCGGCAATGAGTGGAGGTGGTGGAGGAGGAGGCAGTGCTCCCCCACGCTCGCCTTCGCCACCATCAGGGAATGAGTTTAGTATTGGGAGGTCAGAGAGTGGGGGTTTGGGATTGGGAGCGGAAGGAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGTTGGAAGGAGGGTCAGGGACTTGGAAAGCTGGAGCAGGGAATTACGACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGTGGGGTTATAGTGGCTAGTGAAGCAAAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAACAACAACAGGCACCTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATG : GTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATTGTCCAAATGTAACTTCTCTTTATTTTTTAACCGGGACTGTAATTTTGCAAGCTTGTTTAGCGTGCCTTACGTGATACATCTCCTTGTACCTATCGTCTCAAGTTTACACAAAGCTATGTATCGAAAAACTTCACATTATTACTCTTGAGGGAAATTGGTTTGGGTCCTTAGTTTTCATTGTAATGCAAGATATTAGAGAATTATTGTTTTACCGTTGGTTCATTA : AATTAAAAAAAAAAAATCAAA</gDNA_template>
            <first_frame> N  L  R  S  L  S  V  T  M  L  G  G  L  Y  G  D  L  P  P  P  S  S  S  G  D  D  D  K  P  T  N  A  T  T  A  N  V  W  S  S  S  A  K  M  A  P  S  A  L  R  K  P  F  A  P  P  Q  T  L  L  R  P  Q  P  K  P  K  P  Q  P  S  A  A  P  K  P  N  P  S  I  P  L  D  E  N  T  N  P  N  P  T  F  A  T  T  S  F  Q  P  A  L  V  A  V  T  S  S  V  L  E  E  Y  D  P  A  R  P  N  D  Y  E  D  Y  R  R  E  K  K  R  K  Q  M  E  A  E  V  R  R  E  L  E  E  R  E  R  K  E  R  E  R  E  R  E  E  K  E  K  R  E  K  E  R  E  L  N  I  S  G  E  E  A  W  R  R  R  A  A  M  S  G  G  G  G  G  G  G  S  A  P  P  R  S  P  S  P  P  S  G  N  E  F  S  I  G  R  S  E  S  G  G  L  G  L  G  A  E  G  K  M  T  A  A  Q  R  M  M  A  K  M  G  W  K  E  G  Q  G  L  G  K  L  E  Q  G  I  T  T  P  L  M  A  K  K  T  D  K  R  G  G  V  I  V  A  S  E  A  K  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  A  P  E  K  K  V  K  S  V  N  F  N  M  P  P  T  R  V  V  L  L  R  N  M  :  V  G  P  G  E  V  D  D  D  L  E  G  E  V  A  E  E  C  S  K  F  G  T  V  T  R  V  L  I  F  E  I  T  E  T  N  F  P  H  E  E  A  V  R  I  F  V  Q  F  E  R  A  E  H  A  T  K  A  L  I  E  L  E  G  R  F  F  G  G  R  I  V  H  A  C  F  Y  D  E  E  R  F  G  N  N  E  L  A  P  M  P  G  E  I  P  G  F  *  P  N  S  Y  C  P  N  V  T  S  L  Y  F  L  T  G  T  V  I  L  Q  A  C  L  A  C  L  T  *  Y  I  S  L  Y  L  S  S  Q  V  Y  T  K  L  C  I  E  K  L  H  I  I  T  L  E  G  N  W  F  G  S  L  V  F  I  V  M  Q  D  I  R  E  L  L  F  Y  R  W  F  I   : K  L  K  K  K  N  Q  </first_frame>
            <second_frame>  I  S  D  R  F  P  L  Q  C  S  A  A  Y  T  A  I  S  L  R  R  R  P  P  A  T  M  T  S  Q  P  T  P  P  Q  L  M  C  G  P  A  V  L  R  W  L  L  Q  P  F  A  N  P  S  P  H  P  K  H  F  F  D  L  S  R  S  P  N  R  S  L  Q  Q  L  Q  N  L  I  H  R  S  L  L  T  R  T  L  I  Q  I  P  P  L  Q  R  R  R  F  N  Q  P  W  W  L  L  P  A  V  Y  *  K  N  T  T  R  L  G  R  M  I  T  K  I  I  G  G  R  R  R  G  S  K  W  R  L  R  C  G  E  S  W  K  K  E  R  E  R  R  G  S  E  R  G  R  K  R  R  R  E  K  K  R  E  N  *  I  F  Q  V  R  R  H  G  G  G  G  R  Q  *  V  E  V  V  E  E  E  A  V  L  P  H  A  R  L  R  H  H  Q  G  M  S  L  V  L  G  G  Q  R  V  G  V  W  D  W  E  R  K  E  R  *  Q  L  H  K  G  *  W  L  R  W  V  G  R  R  V  R  D  L  E  S  W  S  R  E  L  R  L  H  *  W  L  R  R  L  I  R  E  V  G  L  *  W  L  V  K  Q  S  S  S  S  N  S  S  S  N  N  N  N  N  N  R  H  L  K  R  R  L  R  V  S  I  S  I  C  L  Q  Q  G  S  C  C  L  G  I  W :   L  V  L  A  R  L  M  M  T  *  K  V  R  W  L  K  S  A  L  S  L  V  L  *  L  V  S  *  Y  L  R  L  Q  K  Q  I  S  L  M  K  K  L  F  G  Y  S  F  N  L  R  E  Q  N  T  Q  L  K  P  L  *  N  L  K  V  D  F  L  A  V  G  L  F  M  P  V  S  T  T  R  R  G  L  A  I  T  N  *  L  P  C  Q  E  K  F  L  A  F  D  Q  T  V  I  V  Q  M  *  L  L  F  I  F  *  P  G  L  *  F  C  K  L  V  *  R  A  L  R  D  T  S  P  C  T  Y  R  L  K  F  T  Q  S  Y  V  S  K  N  F  T  L  L  L  L  R  E  I  G  L  G  P  *  F  S  L  *  C  K  I  L  E  N  Y  C  F  T  V  G  S  L  :  N  *  K  K  K  I  K </second_frame>
            <third_frame>   S  P  I  A  F  R  Y  N  A  R  R  L  I  R  R  S  P  S  A  V  V  L  R  R  R  *  Q  A  N  Q  R  H  H  S  *  C  V  V  Q  Q  C  *  D  G  S  F  S  P  S  Q  T  L  R  P  T  P  N  T  S  S  T  S  A  E  A  Q  T  A  A  F  S  S  S  K  T  *  S  I  D  P  S  *  R  E  H  *  S  K  S  H  L  C  N  D  V  V  S  T  S  P  G  G  C  Y  Q  Q  C  I  R  R  I  R  P  G  S  A  E  *  L  R  R  L  S  E  G  E  E  E  E  A  N  G  G  *  G  A  E  R  V  G  R  K  R  E  K  G  E  G  A  R  E  G  G  K  G  E  E  R  K  R  E  R  I  E  Y  F  R  *  G  G  M  E  A  E  G  G  N  E  W  R  W  W  R  R  R  Q  C  S  P  T  L  A  F  A  T  I  R  E  *  V  *  Y  W  E  V  R  E  W  G  F  G  I  G  S  G  R  K  D  D  S  C  T  K  D  D  G  *  D  G  L  E  G  G  S  G  T  W  K  A  G  A  G  N  Y  D  S  I  D  G  *  E  D  *  *  E  R  W  G  Y  S  G  *  *  S  K  A  A  A  A  T  A  A  A  T  T  T  T  T  T  G  T  *  K  E  G  *  E  C  Q  F  Q  Y  A  S  N  K  G  R  A  A  *  E  Y   : G  W  S  W  R  G  *  *  *  P  R  R  *  G  G  *  R  V  L  *  V  W  Y  C  N  S  C  L  N  I  *  D  Y  R  N  K  F  P  S  *  R  S  C  S  D  I  R  S  I  *  E  S  R  T  R  N  *  S  P  Y  R  T  *  R  S  I  F  W  R  *  D  C  S  C  L  F  L  R  R  G  E  V  W  Q  *  R  I  S  S  H  A  R  R  N  S  W  L  L  T  K  Q  L  L  S  K  C  N  F  S  L  F  F  N  R  D  C  N  F  A  S  L  F  S  V  P  Y  V  I  H  L  L  V  P  I  V  S  S  L  H  K  A  M  Y  R  K  T  S  H  Y  Y  S  *  G  K  L  V  W  V  L  S  F  H  C  N  A  R  Y  *  R  I  I  V  L  P  L  V  H  * :   I  K  K  K  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96122" stop="95211"/>
                    <exon start="92639" stop="92346"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLRSLSVTMLGGLYGDLPPPSSSGDDDKPTNATTANVWSSSAKMAPSALRKPFAPPQTLLRPQPKPKPQPSAAPKPNPSIPLDENTNPNPTFATTSFQPALVAVTSSVLEEYDPARPNDYEDYRREKKRKQMEAEVRRELEERERKEREREREEKEKREKERELNISGEEAWRRRAAMSGGGGGGGSAPPRSPSPPSGNEFSIGRSESGGLGLGAEGKMTAAQRMMAKMGWKEGQGLGKLEQGITTPLMAKKTDKRGGVIVASEAKQQQQQQQQQQQQQQAPEKKVKSVNFNMPPTRVVLLRNMVGPGEVDDDLEGEVAEECSKFGTVTRVLIFEITETNFPHEEAVRIFVQFERAEHATKALIELEGRFFGGRIVHACFYDEERFGNNELAPMPGEIPGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96122" e_stop="95211"/>
            <exon e_start="92639" e_stop="92325"/>
            <exon e_start="91951" e_stop="91781"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.734" acc_prob="0.975" e_score="0.949"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96122" e_stop="95211" e_length="912"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95210" i_stop="92640" i_length="2571"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="92639" e_stop="92325" e_length="315"/>
          </exon>
          <intron i_serial="2" don_prob="0.734" acc_prob="0.975">
            <gDNA_intron_boundary i_start="92324" i_stop="91952" i_length="373"/>
          </intron>
          <exon e_serial="3" e_score="0.889">
            <gDNA_exon_boundary e_start="91951" e_stop="91781" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96122" stop="95442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96122" stop="95533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96122" stop="95555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96122" stop="95633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96107" stop="95617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96106" stop="95625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96091" stop="95303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95522" stop="95211"/>
              <exon start="92639" stop="92410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95489" stop="95211"/>
              <exon start="92639" stop="92325"/>
              <exon start="91951" stop="91781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427825" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95473" stop="95211"/>
              <exon start="92639" stop="92382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576367" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTCCGATCGCTTTCCGTTACAATGCTCGGCGGCTTATACGGCGATCTCCCTCCGCCGTCGTCCTCCGGCGACGATGACAAGCCAACCAACGCCACCACAGCTAATGTGTGGTCCAGCAGTGCTAAGATGGCTCCTTCAGCCCTTCGCAAACCCTTCGCCCCACCCCAAACACTTCTTCGACCTCAGCCGAAGCCCAAACCGCAGCCTTCAGCAGCTCCAAAACCTAATCCATCGATCCCTCTTGACGAGAACACTAATCCAAATCCCACCTTTGCAACGACGTCGTTTCAACCAGCCCTGGTGGCTGTTACCAGCAGTGTATTAGAAGAATACGACCCGGCTCGGCCGAATGATTACGAAGATTATCGGAGGGAGAAGAAGAGGAAGCAAATGGAGGCTGAGGTGCGGAGAGAGTTGGAAGAAAGAGAGAGAAAGGAGAGGGAGCGAGAGAGGGAGGAAAAGGAGAAGAGAGAAAAAGAGAGAGAATTGAATATTTCAGGTGAGGAGGCATGGAGGCGGAGGGCGGCAATGAGTGGAGGTGGTGGAGGAGGAGGCAGTGCTCCCCCACGCTCGCCTTCGCCACCATCAGGGAATGAGTTTAGTATTGGGAGGTCAGAGAGTGGGGGTTTGGGATTGGGAGCGGAAGGAAAGATGACAGCTGCACAAAGGATGATGGCTAAGATGGGTTGGAAGGAGGGTCAGGGACTTGGAAAGCTGGAGCAGGGAATTACGACTCCATTGATGGCTAAGAAGACTGATAAGAGAGGTGGGGTTATAGTGGCTAGTGAAGCAAAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAACAACAACAGGCACCTGAAAAGAAGGTTAAGAGTGTCAATTTCAATATGCCTCCAACAAGGGTCGTGCTGCTTAGGAATATG : GTTGGTCCTGGCGAGGTTGATGATGACCTAGAAGGTGAGGTGGCTGAAGAGTGCTCTAAGTTTGGTACTGTAACTCGTGTCTTAATATTTGAGATTACAGAAACAAATTTCCCTCATGAAGAAGCTGTTCGGATATTCGTTCAATTTGAGAGAGCAGAACACGCAACTAAAGCCCTTATAGAACTTGAAGGTCGATTTTTTGGCGGTAGGATTGTTCATGCCTGTTTCTACGACGAGGAGAGGTTTGGCAATAACGAATTAGCTCCCATGCCAGGAGAAATTCCTGGCTTTTGACCAAACAGTTATTGTCCAAAT : GAAGATCTGAGATTGTTTTTTGAAGTGATAAACTTGAGTGGCTTGTAATGACTATTCTTTTTTTAAAAAAGATAATCAATGTGTTGCTAAAAAGGGGAACACACTACATATCTCCACCATACTAAAAAACATCTGTAGTTCTCTGTAATGTGGAAGTTGGTATATAGTCTT</gDNA_template>
            <first_frame> N  L  R  S  L  S  V  T  M  L  G  G  L  Y  G  D  L  P  P  P  S  S  S  G  D  D  D  K  P  T  N  A  T  T  A  N  V  W  S  S  S  A  K  M  A  P  S  A  L  R  K  P  F  A  P  P  Q  T  L  L  R  P  Q  P  K  P  K  P  Q  P  S  A  A  P  K  P  N  P  S  I  P  L  D  E  N  T  N  P  N  P  T  F  A  T  T  S  F  Q  P  A  L  V  A  V  T  S  S  V  L  E  E  Y  D  P  A  R  P  N  D  Y  E  D  Y  R  R  E  K  K  R  K  Q  M  E  A  E  V  R  R  E  L  E  E  R  E  R  K  E  R  E  R  E  R  E  E  K  E  K  R  E  K  E  R  E  L  N  I  S  G  E  E  A  W  R  R  R  A  A  M  S  G  G  G  G  G  G  G  S  A  P  P  R  S  P  S  P  P  S  G  N  E  F  S  I  G  R  S  E  S  G  G  L  G  L  G  A  E  G  K  M  T  A  A  Q  R  M  M  A  K  M  G  W  K  E  G  Q  G  L  G  K  L  E  Q  G  I  T  T  P  L  M  A  K  K  T  D  K  R  G  G  V  I  V  A  S  E  A  K  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  Q  A  P  E  K  K  V  K  S  V  N  F  N  M  P  P  T  R  V  V  L  L  R  N  M  :  V  G  P  G  E  V  D  D  D  L  E  G  E  V  A  E  E  C  S  K  F  G  T  V  T  R  V  L  I  F  E  I  T  E  T  N  F  P  H  E  E  A  V  R  I  F  V  Q  F  E  R  A  E  H  A  T  K  A  L  I  E  L  E  G  R  F  F  G  G  R  I  V  H  A  C  F  Y  D  E  E  R  F  G  N  N  E  L  A  P  M  P  G  E  I  P  G  F  *  P  N  S  Y  C  P  N  :  E  D  L  R  L  F  F  E  V  I  N  L  S  G  L  *  *  L  F  F  F  *  K  R  *  S  M  C  C  *  K  G  E  H  T  T  Y  L  H  H  T  K  K  H  L  *  F  S  V  M  W  K  L  V  Y  S  L </first_frame>
            <second_frame>  I  S  D  R  F  P  L  Q  C  S  A  A  Y  T  A  I  S  L  R  R  R  P  P  A  T  M  T  S  Q  P  T  P  P  Q  L  M  C  G  P  A  V  L  R  W  L  L  Q  P  F  A  N  P  S  P  H  P  K  H  F  F  D  L  S  R  S  P  N  R  S  L  Q  Q  L  Q  N  L  I  H  R  S  L  L  T  R  T  L  I  Q  I  P  P  L  Q  R  R  R  F  N  Q  P  W  W  L  L  P  A  V  Y  *  K  N  T  T  R  L  G  R  M  I  T  K  I  I  G  G  R  R  R  G  S  K  W  R  L  R  C  G  E  S  W  K  K  E  R  E  R  R  G  S  E  R  G  R  K  R  R  R  E  K  K  R  E  N  *  I  F  Q  V  R  R  H  G  G  G  G  R  Q  *  V  E  V  V  E  E  E  A  V  L  P  H  A  R  L  R  H  H  Q  G  M  S  L  V  L  G  G  Q  R  V  G  V  W  D  W  E  R  K  E  R  *  Q  L  H  K  G  *  W  L  R  W  V  G  R  R  V  R  D  L  E  S  W  S  R  E  L  R  L  H  *  W  L  R  R  L  I  R  E  V  G  L  *  W  L  V  K  Q  S  S  S  S  N  S  S  S  N  N  N  N  N  N  R  H  L  K  R  R  L  R  V  S  I  S  I  C  L  Q  Q  G  S  C  C  L  G  I  W :   L  V  L  A  R  L  M  M  T  *  K  V  R  W  L  K  S  A  L  S  L  V  L  *  L  V  S  *  Y  L  R  L  Q  K  Q  I  S  L  M  K  K  L  F  G  Y  S  F  N  L  R  E  Q  N  T  Q  L  K  P  L  *  N  L  K  V  D  F  L  A  V  G  L  F  M  P  V  S  T  T  R  R  G  L  A  I  T  N  *  L  P  C  Q  E  K  F  L  A  F  D  Q  T  V  I  V  Q  M :   K  I  *  D  C  F  L  K  *  *  T  *  V  A  C  N  D  Y  S  F  F  K  K  D  N  Q  C  V  A  K  K  G  N  T  L  H  I  S  T  I  L  K  N  I  C  S  S  L  *  C  G  S  W  Y  I  V   </second_frame>
            <third_frame>   S  P  I  A  F  R  Y  N  A  R  R  L  I  R  R  S  P  S  A  V  V  L  R  R  R  *  Q  A  N  Q  R  H  H  S  *  C  V  V  Q  Q  C  *  D  G  S  F  S  P  S  Q  T  L  R  P  T  P  N  T  S  S  T  S  A  E  A  Q  T  A  A  F  S  S  S  K  T  *  S  I  D  P  S  *  R  E  H  *  S  K  S  H  L  C  N  D  V  V  S  T  S  P  G  G  C  Y  Q  Q  C  I  R  R  I  R  P  G  S  A  E  *  L  R  R  L  S  E  G  E  E  E  E  A  N  G  G  *  G  A  E  R  V  G  R  K  R  E  K  G  E  G  A  R  E  G  G  K  G  E  E  R  K  R  E  R  I  E  Y  F  R  *  G  G  M  E  A  E  G  G  N  E  W  R  W  W  R  R  R  Q  C  S  P  T  L  A  F  A  T  I  R  E  *  V  *  Y  W  E  V  R  E  W  G  F  G  I  G  S  G  R  K  D  D  S  C  T  K  D  D  G  *  D  G  L  E  G  G  S  G  T  W  K  A  G  A  G  N  Y  D  S  I  D  G  *  E  D  *  *  E  R  W  G  Y  S  G  *  *  S  K  A  A  A  A  T  A  A  A  T  T  T  T  T  T  G  T  *  K  E  G  *  E  C  Q  F  Q  Y  A  S  N  K  G  R  A  A  *  E  Y   : G  W  S  W  R  G  *  *  *  P  R  R  *  G  G  *  R  V  L  *  V  W  Y  C  N  S  C  L  N  I  *  D  Y  R  N  K  F  P  S  *  R  S  C  S  D  I  R  S  I  *  E  S  R  T  R  N  *  S  P  Y  R  T  *  R  S  I  F  W  R  *  D  C  S  C  L  F  L  R  R  G  E  V  W  Q  *  R  I  S  S  H  A  R  R  N  S  W  L  L  T  K  Q  L  L  S  K   : *  R  S  E  I  V  F  *  S  D  K  L  E  W  L  V  M  T  I  L  F  L  K  K  I  I  N  V  L  L  K  R  G  T  H  Y  I  S  P  P  Y  *  K  T  S  V  V  L  C  N  V  E  V  G  I  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96122" stop="95211"/>
                    <exon start="92639" stop="92346"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLRSLSVTMLGGLYGDLPPPSSSGDDDKPTNATTANVWSSSAKMAPSALRKPFAPPQTLLRPQPKPKPQPSAAPKPNPSIPLDENTNPNPTFATTSFQPALVAVTSSVLEEYDPARPNDYEDYRREKKRKQMEAEVRRELEERERKEREREREEKEKREKERELNISGEEAWRRRAAMSGGGGGGGSAPPRSPSPPSGNEFSIGRSESGGLGLGAEGKMTAAQRMMAKMGWKEGQGLGKLEQGITTPLMAKKTDKRGGVIVASEAKQQQQQQQQQQQQQQAPEKKVKSVNFNMPPTRVVLLRNMVGPGEVDDDLEGEVAEECSKFGTVTRVLIFEITETNFPHEEAVRIFVQFERAEHATKALIELEGRFFGGRIVHACFYDEERFGNNELAPMPGEIPGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="108673" PGL_stop="97547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108673" e_stop="108633"/>
            <exon e_start="106396" e_stop="106293"/>
            <exon e_start="106179" e_stop="106014"/>
            <exon e_start="105904" e_stop="105782"/>
            <exon e_start="103367" e_stop="103293"/>
            <exon e_start="101497" e_stop="101356"/>
            <exon e_start="100440" e_stop="100411"/>
            <exon e_start="98698" e_stop="98628"/>
            <exon e_start="98542" e_stop="97547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.933" e_score="0.976"/>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.981"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.970"/>
          <exon-intron don_prob="0.975" acc_prob="0.000" e_score="0.967"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.982" e_score="0.978"/>
          <exon-intron don_prob="0.982" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.762" acc_prob="0.907" e_score="0.986"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="108673" e_stop="108633" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.933">
            <gDNA_intron_boundary i_start="108632" i_stop="106397" i_length="2236"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="106396" e_stop="106293" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="106292" i_stop="106180" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="106179" e_stop="106014" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106013" i_stop="105905" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="105904" e_stop="105782" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105781" i_stop="103368" i_length="2414"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="103367" e_stop="103293" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103292" i_stop="101498" i_length="1795"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="101497" e_stop="101356" e_length="142"/>
          </exon>
          <intron i_serial="6" don_prob="0.877" acc_prob="0.982">
            <gDNA_intron_boundary i_start="101355" i_stop="100441" i_length="915"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="100440" e_stop="100411" e_length="30"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.988">
            <gDNA_intron_boundary i_start="100410" i_stop="98699" i_length="1712"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="98698" e_stop="98628" e_length="71"/>
          </exon>
          <intron i_serial="8" don_prob="0.762" acc_prob="0.907">
            <gDNA_intron_boundary i_start="98627" i_stop="98543" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="0.992">
            <gDNA_exon_boundary e_start="98542" e_stop="97547" e_length="996"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108673" stop="108633"/>
              <exon start="106396" stop="106293"/>
              <exon start="106179" stop="106014"/>
              <exon start="105904" stop="105782"/>
              <exon start="103367" stop="103293"/>
              <exon start="101497" stop="101356"/>
              <exon start="100440" stop="100411"/>
              <exon start="98698" stop="98670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108673" stop="108633"/>
              <exon start="106396" stop="106293"/>
              <exon start="106179" stop="106014"/>
              <exon start="105904" stop="105782"/>
              <exon start="103367" stop="103293"/>
              <exon start="101497" stop="101360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101447" stop="101356"/>
              <exon start="100440" stop="100411"/>
              <exon start="98698" stop="98628"/>
              <exon start="98542" stop="98051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101447" stop="101356"/>
              <exon start="100440" stop="100411"/>
              <exon start="98698" stop="98628"/>
              <exon start="98542" stop="98069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98438" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98438" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97953" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97903" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGGAGCTTACATCCACCTCTTGGGAAGCATCGTCTGAAG : ATTATAGAGTTTGTTTCAGTCTTGGTGAGTGTTAGCAGTGAAGCTGCTGAAAAGGAGTTGATTCGGCTTGGTGCTGTTAAACGCATCTTAGAATTGTTTTTTGA : GTATCCATACAACAACTTTTTGCATCATCATGTTGAGACTATAATAATTTCGTGCCTGGAGAGTAAGAATATTCAATTTGTTGACCATCTTCTTAGTGACTGTAATCTTCTCTTGAAAATTCTCGAGGCAGAGAAAAACTCAACGCTTGCTGCTGATCAATCCAAG : CCAACGGCCTCTGTTGAGGGAAGAACCCCACCCAGGATTGGAAACATTGGGCATGTGACGCGAATAGCTAACAAACTTGTTCAACTAGGGAACAATAATAATGGCATACAGTCGCGTCTGCAG : TGAATGGATTGATTGGCAGACAAATATTCTTCAAAAACGGAATGCTGTGGAAAATGTTTTCCAGTGGGCTTGTGG : GAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAG : GCTCGTGGTTCACTTGAGCGGGATGATGAG : GATGTCTATTTTGATGATGAGTCTGCTGAAGTTGTGATATCTTCACTACGTCTGGGGGACGATCAGGAAAG : TGGATCACTTTTTACAAATTCCAACTGGTTTGCTTTTGAGGATGACAAAGAGATTCGTGAACAGTACACTGCTTTGGTTGCTTCTCCTTCACCTGACACAGAAGAAACTAATATTATTAGGCCCAGCACAAATGATGATGCAGCTGCTGATGAAGATGATGATTTGGCAGACACTGCCTCATCTGATCAACCTGAGCCAAAACAAAGTTCTGATCATCCTGCACCCTCTAGTTTGTCTGAGGACTTGCATCGTGCTACAAGTAATGAAACCATTAAGCCTCCTGAATGGGTTGAATGGCGAGAAAACTCTAATACAATTGCAACATCCAATCAAACCTCGGATTCAGCTGGTGTTGCTGATGTGGTCGGGCCTCCTTTACCTAATGGCGACGTCAAAAAGGAATCAGAAGCTCCAAAGGATACTACTCGGTCAAAAGAAGAAAATGCTCATATTCCACCCACTAATGTGTGCACCAGTAATGTGAAAGAAGGATCATCAGGTGATACCTCACAGCCTCCAGAATCAGGTGGCAGCCAAAGCGCTAGCAATGCTAGTTCAAGTAGTGTGGAGAAGCCCCCTGCTGGAACGGTGGGATCATCTAGTGGAGAAACCAAAAAGTGAAGTGTGGAACCACTGTGAATTCTCGAGGTGCAGTTGCGGGAGAAAAAACCTGGCACTTTTGCTATTGGTCTGGTGCACTGATGAGAGTCTCAGCGCTTGCTATCGGCTGGGACTAATATGTGGTTTTGGAGCCTGATGTATATTACTGGGCTTAAAAGTCGATTTAGCCACAGATGATTCTTTCCTCAACTCATAGGTAAAGAATGCTCTCTCTTTCCTCTCACTTATTAAAGGCCTTTAGTGCAGGTGATTCAGTAGATCATACTTTTATTACTAACACACAACTGCCTCTAGATGTGTCCAAACTGCCAAAGGGAGTTGTGTTGCTGTACACATTGAAAGGATCTTCGTTTTATATCATCTCATATTTTGTC</gDNA_template>
            <first_frame> M  G  A  Y  I  H  L  L  G  S  I  V  *  R :   L  *  S  L  F  Q  S  W  *  V  L  A  V  K  L  L  K  R  S  *  F  G  L  V  L  L  N  A  S  *  N  C  F  L   : S  I  H  T  T  T  F  C  I  I  M  L  R  L  *  *  F  R  A  W  R  V  R  I  F  N  L  L  T  I  F  L  V  T  V  I  F  S  *  K  F  S  R  Q  R  K  T  Q  R  L  L  L  I  N  P  S :   Q  R  P  L  L  R  E  E  P  H  P  G  L  E  T  L  G  M  *  R  E  *  L  T  N  L  F  N  *  G  T  I  I  M  A  Y  S  R  V  C  S :   E  W  I  D  W  Q  T  N  I  L  Q  K  R  N  A  V  E  N  V  F  Q  W  A  C  G :   R  P  T  S  L  H  D  R  M  R  D  S  D  D  D  D  Y  Q  D  R  D  Y  D  V  A  A  L  A  N  N  L  S  Q  A  F  R  Y  G  I  Y  N  N  D  E  L  D  E  :  A  R  G  S  L  E  R  D  D  E  :  D  V  Y  F  D  D  E  S  A  E  V  V  I  S  S  L  R  L  G  D  D  Q  E  S :   G  S  L  F  T  N  S  N  W  F  A  F  E  D  D  K  E  I  R  E  Q  Y  T  A  L  V  A  S  P  S  P  D  T  E  E  T  N  I  I  R  P  S  T  N  D  D  A  A  A  D  E  D  D  D  L  A  D  T  A  S  S  D  Q  P  E  P  K  Q  S  S  D  H  P  A  P  S  S  L  S  E  D  L  H  R  A  T  S  N  E  T  I  K  P  P  E  W  V  E  W  R  E  N  S  N  T  I  A  T  S  N  Q  T  S  D  S  A  G  V  A  D  V  V  G  P  P  L  P  N  G  D  V  K  K  E  S  E  A  P  K  D  T  T  R  S  K  E  E  N  A  H  I  P  P  T  N  V  C  T  S  N  V  K  E  G  S  S  G  D  T  S  Q  P  P  E  S  G  G  S  Q  S  A  S  N  A  S  S  S  S  V  E  K  P  P  A  G  T  V  G  S  S  S  G  E  T  K  K  *  S  V  E  P  L  *  I  L  E  V  Q  L  R  E  K  K  P  G  T  F  A  I  G  L  V  H  *  *  E  S  Q  R  L  L  S  A  G  T  N  M  W  F  W  S  L  M  Y  I  T  G  L  K  S  R  F  S  H  R  *  F  F  P  Q  L  I  G  K  E  C  S  L  F  P  L  T  Y  *  R  P  L  V  Q  V  I  Q  *  I  I  L  L  L  L  T  H  N  C  L  *  M  C  P  N  C  Q  R  E  L  C  C  C  T  H  *  K  D  L  R  F  I  S  S  H  I  L   </first_frame>
            <second_frame>  W  E  L  T  S  T  S  W  E  A  S  S  E   : D  Y  R  V  C  F  S  L  G  E  C  *  Q  *  S  C  *  K  G  V  D  S  A  W  C  C  *  T  H  L  R  I  V  F  *  :  V  S  I  Q  Q  L  F  A  S  S  C  *  D  Y  N  N  F  V  P  G  E  *  E  Y  S  I  C  *  P  S  S  *  *  L  *  S  S  L  E  N  S  R  G  R  E  K  L  N  A  C  C  *  S  I  Q   : A  N  G  L  C  *  G  K  N  P  T  Q  D  W  K  H  W  A  C  D  A  N  S  *  Q  T  C  S  T  R  E  Q  *  *  W  H  T  V  A  S  A   : V  N  G  L  I  G  R  Q  I  F  F  K  N  G  M  L  W  K  M  F  S  S  G  L  V   : G  D  P  H  H  C  M  T  E  *  G  T  V  M  M  M  I  I  K  I  E  T  M  M  L  Q  L  W  Q  I  T  *  A  R  P  S  A  M  E  S  I  T  T  M  N  L  M  R :   L  V  V  H  L  S  G  M  M  R :   M  S  I  L  M  M  S  L  L  K  L  *  Y  L  H  Y  V  W  G  T  I  R  K   : V  D  H  F  L  Q  I  P  T  G  L  L  L  R  M  T  K  R  F  V  N  S  T  L  L  W  L  L  L  L  H  L  T  Q  K  K  L  I  L  L  G  P  A  Q  M  M  M  Q  L  L  M  K  M  M  I  W  Q  T  L  P  H  L  I  N  L  S  Q  N  K  V  L  I  I  L  H  P  L  V  C  L  R  T  C  I  V  L  Q  V  M  K  P  L  S  L  L  N  G  L  N  G  E  K  T  L  I  Q  L  Q  H  P  I  K  P  R  I  Q  L  V  L  L  M  W  S  G  L  L  Y  L  M  A  T  S  K  R  N  Q  K  L  Q  R  I  L  L  G  Q  K  K  K  M  L  I  F  H  P  L  M  C  A  P  V  M  *  K  K  D  H  Q  V  I  P  H  S  L  Q  N  Q  V  A  A  K  A  L  A  M  L  V  Q  V  V  W  R  S  P  L  L  E  R  W  D  H  L  V  E  K  P  K  S  E  V  W  N  H  C  E  F  S  R  C  S  C  G  R  K  N  L  A  L  L  L  L  V  W  C  T  D  E  S  L  S  A  C  Y  R  L  G  L  I  C  G  F  G  A  *  C  I  L  L  G  L  K  V  D  L  A  T  D  D  S  F  L  N  S  *  V  K  N  A  L  S  F  L  S  L  I  K  G  L  *  C  R  *  F  S  R  S  Y  F  Y  Y  *  H  T  T  A  S  R  C  V  Q  T  A  K  G  S  C  V  A  V  H  I  E  R  I  F  V  L  Y  H  L  I  F  C  </second_frame>
            <third_frame>   G  S  L  H  P  P  L  G  K  H  R  L  K  :  I  I  E  F  V  S  V  L  V  S  V  S  S  E  A  A  E  K  E  L  I  R  L  G  A  V  K  R  I  L  E  L  F  F  E :   Y  P  Y  N  N  F  L  H  H  H  V  E  T  I  I  I  S  C  L  E  S  K  N  I  Q  F  V  D  H  L  L  S  D  C  N  L  L  L  K  I  L  E  A  E  K  N  S  T  L  A  A  D  Q  S  K  :  P  T  A  S  V  E  G  R  T  P  P  R  I  G  N  I  G  H  V  T  R  I  A  N  K  L  V  Q  L  G  N  N  N  N  G  I  Q  S  R  L  Q  :  *  M  D  *  L  A  D  K  Y  S  S  K  T  E  C  C  G  K  C  F  P  V  G  L  W  :  E  T  H  I  T  A  *  P  N  E  G  Q  *  *  *  *  L  S  R  *  R  L  *  C  C  S  S  G  K  *  L  K  P  G  L  P  L  W  N  L  *  Q  R  *  T  *  *   : G  S  W  F  T  *  A  G  *  *   : G  C  L  F  *  *  *  V  C  *  S  C  D  I  F  T  T  S  G  G  R  S  G  K  :  W  I  T  F  Y  K  F  Q  L  V  C  F  *  G  *  Q  R  D  S  *  T  V  H  C  F  G  C  F  S  F  T  *  H  R  R  N  *  Y  Y  *  A  Q  H  K  *  *  C  S  C  *  *  R  *  *  F  G  R  H  C  L  I  *  S  T  *  A  K  T  K  F  *  S  S  C  T  L  *  F  V  *  G  L  A  S  C  Y  K  *  *  N  H  *  A  S  *  M  G  *  M  A  R  K  L  *  Y  N  C  N  I  Q  S  N  L  G  F  S  W  C  C  *  C  G  R  A  S  F  T  *  W  R  R  Q  K  G  I  R  S  S  K  G  Y  Y  S  V  K  R  R  K  C  S  Y  S  T  H  *  C  V  H  Q  *  C  E  R  R  I  I  R  *  Y  L  T  A  S  R  I  R  W  Q  P  K  R  *  Q  C  *  F  K  *  C  G  E  A  P  C  W  N  G  G  I  I  *  W  R  N  Q  K  V  K  C  G  T  T  V  N  S  R  G  A  V  A  G  E  K  T  W  H  F  C  Y  W  S  G  A  L  M  R  V  S  A  L  A  I  G  W  D  *  Y  V  V  L  E  P  D  V  Y  Y  W  A  *  K  S  I  *  P  Q  M  I  L  S  S  T  H  R  *  R  M  L  S  L  S  S  H  L  L  K  A  F  S  A  G  D  S  V  D  H  T  F  I  T  N  T  Q  L  P  L  D  V  S  K  L  P  K  G  V  V  L  L  Y  T  L  K  G  S  S  F  Y  I  I  S  Y  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105816" stop="105782"/>
                    <exon start="103367" stop="103293"/>
                    <exon start="101497" stop="101356"/>
                    <exon start="100440" stop="100411"/>
                    <exon start="98698" stop="98628"/>
                    <exon start="98542" stop="97921"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTIIMAYSRVCSEWIDWQTNILQKRNAVENVFQWACGRPTSLHDRMRDSDDDDYQDRDYDVAALANNLSQAFRYGIYNNDELDEARGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDKEIREQYTALVASPSPDTEETNIIRPSTNDDAAADEDDDLADTASSDQPEPKQSSDHPAPSSLSEDLHRATSNETIKPPEWVEWRENSNTIATSNQTSDSAGVADVVGPPLPNGDVKKESEAPKDTTRSKEENAHIPPTNVCTSNVKEGSSGDTSQPPESGGSQSASNASSSSVEKPPAGTVGSSSGETKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="102382" e_stop="102300"/>
            <exon e_start="102018" e_stop="101356"/>
            <exon e_start="100440" e_stop="100411"/>
            <exon e_start="98698" e_stop="98628"/>
            <exon e_start="98542" e_stop="97547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.976"/>
          <exon-intron don_prob="0.877" acc_prob="0.982" e_score="0.980"/>
          <exon-intron don_prob="0.982" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.762" acc_prob="0.907" e_score="0.986"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="102382" e_stop="102300" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102299" i_stop="102019" i_length="281"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="102018" e_stop="101356" e_length="663"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="0.982">
            <gDNA_intron_boundary i_start="101355" i_stop="100441" i_length="915"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100440" e_stop="100411" e_length="30"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.988">
            <gDNA_intron_boundary i_start="100410" i_stop="98699" i_length="1712"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="98698" e_stop="98628" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.762" acc_prob="0.907">
            <gDNA_intron_boundary i_start="98627" i_stop="98543" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="98542" e_stop="97547" e_length="996"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102382" stop="102300"/>
              <exon start="102018" stop="101356"/>
              <exon start="100440" stop="100411"/>
              <exon start="98698" stop="98663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101447" stop="101356"/>
              <exon start="100440" stop="100411"/>
              <exon start="98698" stop="98628"/>
              <exon start="98542" stop="98051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101447" stop="101356"/>
              <exon start="100440" stop="100411"/>
              <exon start="98698" stop="98628"/>
              <exon start="98542" stop="98069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98438" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98438" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97953" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97903" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGT : GTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATTGGGATGCAGAAAGTACGAAATATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGTATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAG : GCTCGTGGTTCACTTGAGCGGGATGATGAG : GATGTCTATTTTGATGATGAGTCTGCTGAAGTTGTGATATCTTCACTACGTCTGGGGGACGATCAGGAAAG : TGGATCACTTTTTACAAATTCCAACTGGTTTGCTTTTGAGGATGACAAAGAGATTCGTGAACAGTACACTGCTTTGGTTGCTTCTCCTTCACCTGACACAGAAGAAACTAATATTATTAGGCCCAGCACAAATGATGATGCAGCTGCTGATGAAGATGATGATTTGGCAGACACTGCCTCATCTGATCAACCTGAGCCAAAACAAAGTTCTGATCATCCTGCACCCTCTAGTTTGTCTGAGGACTTGCATCGTGCTACAAGTAATGAAACCATTAAGCCTCCTGAATGGGTTGAATGGCGAGAAAACTCTAATACAATTGCAACATCCAATCAAACCTCGGATTCAGCTGGTGTTGCTGATGTGGTCGGGCCTCCTTTACCTAATGGCGACGTCAAAAAGGAATCAGAAGCTCCAAAGGATACTACTCGGTCAAAAGAAGAAAATGCTCATATTCCACCCACTAATGTGTGCACCAGTAATGTGAAAGAAGGATCATCAGGTGATACCTCACAGCCTCCAGAATCAGGTGGCAGCCAAAGCGCTAGCAATGCTAGTTCAAGTAGTGTGGAGAAGCCCCCTGCTGGAACGGTGGGATCATCTAGTGGAGAAACCAAAAAGTGAAGTGTGGAACCACTGTGAATTCTCGAGGTGCAGTTGCGGGAGAAAAAACCTGGCACTTTTGCTATTGGTCTGGTGCACTGATGAGAGTCTCAGCGCTTGCTATCGGCTGGGACTAATATGTGGTTTTGGAGCCTGATGTATATTACTGGGCTTAAAAGTCGATTTAGCCACAGATGATTCTTTCCTCAACTCATAGGTAAAGAATGCTCTCTCTTTCCTCTCACTTATTAAAGGCCTTTAGTGCAGGTGATTCAGTAGATCATACTTTTATTACTAACACACAACTGCCTCTAGATGTGTCCAAACTGCCAAAGGGAGTTGTGTTGCTGTACACATTGAAAGGATCTTCGTTTTATATCATCTCATATTTTGTC</gDNA_template>
            <first_frame> K  E  Y  L  L  S  G  G  L  R  Q  W  T  F  F  L  L  I  T  L  S  I  S  I  Y  V  A  V :   F  E  T  T  S  F  K  S  L  S  F  F  L  A  S  H  K  L  G  C  R  K  Y  E  I  Y  K  D  V  I  L  F  G  T  D  *  K  G  M  S  V  T  *  F  R  K  K  G  V  P  C  F  M  I  Y  N  K  L  W  A  L  N  V  S  F  I  L  *  K  A  F  *  V  S  *  P  N  S  S  N  D  I  Y  L  T  L  Q  E  I  L  A  A  I  E  G  E  N  H  A  Q  I  *  L  F  L  T  F  D  R  L  C  K  F  Y  K  S  T  P  F  F  H  L  S  W  T  Q  H  F  E  E  N  I  I  I  T  S  F  L  I  P  M  V  Y  F  H  L  F  I  G  L  I  M  I  V  V  C  *  S  L  Y  Q  H  N  I  D  F  Y  F  M  *  P  L  S  G  D  P  H  H  C  M  T  E  *  G  T  V  M  M  M  I  I  K  I  E  T  M  M  L  Q  L  W  Q  I  T  *  A  R  P  S  A  M  E  S  I  T  T  M  N  L  M  R :   L  V  V  H  L  S  G  M  M  R :   M  S  I  L  M  M  S  L  L  K  L  *  Y  L  H  Y  V  W  G  T  I  R  K   : V  D  H  F  L  Q  I  P  T  G  L  L  L  R  M  T  K  R  F  V  N  S  T  L  L  W  L  L  L  L  H  L  T  Q  K  K  L  I  L  L  G  P  A  Q  M  M  M  Q  L  L  M  K  M  M  I  W  Q  T  L  P  H  L  I  N  L  S  Q  N  K  V  L  I  I  L  H  P  L  V  C  L  R  T  C  I  V  L  Q  V  M  K  P  L  S  L  L  N  G  L  N  G  E  K  T  L  I  Q  L  Q  H  P  I  K  P  R  I  Q  L  V  L  L  M  W  S  G  L  L  Y  L  M  A  T  S  K  R  N  Q  K  L  Q  R  I  L  L  G  Q  K  K  K  M  L  I  F  H  P  L  M  C  A  P  V  M  *  K  K  D  H  Q  V  I  P  H  S  L  Q  N  Q  V  A  A  K  A  L  A  M  L  V  Q  V  V  W  R  S  P  L  L  E  R  W  D  H  L  V  E  K  P  K  S  E  V  W  N  H  C  E  F  S  R  C  S  C  G  R  K  N  L  A  L  L  L  L  V  W  C  T  D  E  S  L  S  A  C  Y  R  L  G  L  I  C  G  F  G  A  *  C  I  L  L  G  L  K  V  D  L  A  T  D  D  S  F  L  N  S  *  V  K  N  A  L  S  F  L  S  L  I  K  G  L  *  C  R  *  F  S  R  S  Y  F  Y  Y  *  H  T  T  A  S  R  C  V  Q  T  A  K  G  S  C  V  A  V  H  I  E  R  I  F  V  L  Y  H  L  I  F  C  </first_frame>
            <second_frame>  K  N  T  F  F  Q  E  A  S  G  S  G  H  F  S  C  *  L  L  S  P  S  Q  F  M  W  R   : C  L  R  P  Q  V  S  K  A  F  L  S  F  L  P  H  I  N  W  D  A  E  S  T  K  Y  I  K  M  S  F  F  L  E  L  T  K  K  E  *  V  S  H  S  L  G  K  R  E  Y  H  V  S  *  Y  I  T  N  C  G  P  *  M  S  H  L  F  C  K  K  H  F  E  F  P  S  R  I  P  L  M  I  F  T  L  P  Y  K  K  F  L  P  R  L  K  E  R  I  M  P  R  F  D  C  S  S  L  L  I  V  C  V  N  F  I  K  V  R  H  F  F  I  *  V  G  H  N  I  L  K  K  I  *  S  L  H  P  F  *  Y  Q  W  Y  I  F  I  F  S  L  D  *  S  *  L  *  F  V  S  L  Y  T  S  I  I  L  T  F  I  S  C  N  L  S  Q  E  T  H  I  T  A  *  P  N  E  G  Q  *  *  *  *  L  S  R  *  R  L  *  C  C  S  S  G  K  *  L  K  P  G  L  P  L  W  N  L  *  Q  R  *  T  *  *   : G  S  W  F  T  *  A  G  *  *   : G  C  L  F  *  *  *  V  C  *  S  C  D  I  F  T  T  S  G  G  R  S  G  K  :  W  I  T  F  Y  K  F  Q  L  V  C  F  *  G  *  Q  R  D  S  *  T  V  H  C  F  G  C  F  S  F  T  *  H  R  R  N  *  Y  Y  *  A  Q  H  K  *  *  C  S  C  *  *  R  *  *  F  G  R  H  C  L  I  *  S  T  *  A  K  T  K  F  *  S  S  C  T  L  *  F  V  *  G  L  A  S  C  Y  K  *  *  N  H  *  A  S  *  M  G  *  M  A  R  K  L  *  Y  N  C  N  I  Q  S  N  L  G  F  S  W  C  C  *  C  G  R  A  S  F  T  *  W  R  R  Q  K  G  I  R  S  S  K  G  Y  Y  S  V  K  R  R  K  C  S  Y  S  T  H  *  C  V  H  Q  *  C  E  R  R  I  I  R  *  Y  L  T  A  S  R  I  R  W  Q  P  K  R  *  Q  C  *  F  K  *  C  G  E  A  P  C  W  N  G  G  I  I  *  W  R  N  Q  K  V  K  C  G  T  T  V  N  S  R  G  A  V  A  G  E  K  T  W  H  F  C  Y  W  S  G  A  L  M  R  V  S  A  L  A  I  G  W  D  *  Y  V  V  L  E  P  D  V  Y  Y  W  A  *  K  S  I  *  P  Q  M  I  L  S  S  T  H  R  *  R  M  L  S  L  S  S  H  L  L  K  A  F  S  A  G  D  S  V  D  H  T  F  I  T  N  T  Q  L  P  L  D  V  S  K  L  P  K  G  V  V  L  L  Y  T  L  K  G  S  S  F  Y  I  I  S  Y  F  V </second_frame>
            <third_frame>   R  I  P  S  F  R  R  P  Q  A  V  D  I  F  L  V  N  Y  S  L  H  L  N  L  C  G  G  :  V  *  D  H  K  F  Q  K  P  F  F  L  S  C  L  T  *  I  G  M  Q  K  V  R  N  I  *  R  C  H  S  F  W  N  *  L  K  R  N  E  C  H  I  V  *  E  K  G  S  T  M  F  H  D  I  *  Q  I  V  G  L  E  C  L  I  Y  S  V  K  S  I  L  S  F  L  A  E  F  L  *  *  Y  L  P  Y  L  T  R  N  S  C  R  D  *  R  R  E  S  C  P  D  L  T  V  P  H  F  *  S  F  V  *  I  L  *  K  Y  A  I  F  S  F  E  L  D  T  T  F  *  R  K  Y  N  H  Y  I  L  S  N  T  N  G  I  F  S  S  F  H  W  I  D  H  D  C  S  L  L  V  F  I  P  A  *  Y  *  L  L  F  H  V  T  S  L  R  R  P  T  S  L  H  D  R  M  R  D  S  D  D  D  D  Y  Q  D  R  D  Y  D  V  A  A  L  A  N  N  L  S  Q  A  F  R  Y  G  I  Y  N  N  D  E  L  D  E  :  A  R  G  S  L  E  R  D  D  E  :  D  V  Y  F  D  D  E  S  A  E  V  V  I  S  S  L  R  L  G  D  D  Q  E  S :   G  S  L  F  T  N  S  N  W  F  A  F  E  D  D  K  E  I  R  E  Q  Y  T  A  L  V  A  S  P  S  P  D  T  E  E  T  N  I  I  R  P  S  T  N  D  D  A  A  A  D  E  D  D  D  L  A  D  T  A  S  S  D  Q  P  E  P  K  Q  S  S  D  H  P  A  P  S  S  L  S  E  D  L  H  R  A  T  S  N  E  T  I  K  P  P  E  W  V  E  W  R  E  N  S  N  T  I  A  T  S  N  Q  T  S  D  S  A  G  V  A  D  V  V  G  P  P  L  P  N  G  D  V  K  K  E  S  E  A  P  K  D  T  T  R  S  K  E  E  N  A  H  I  P  P  T  N  V  C  T  S  N  V  K  E  G  S  S  G  D  T  S  Q  P  P  E  S  G  G  S  Q  S  A  S  N  A  S  S  S  S  V  E  K  P  P  A  G  T  V  G  S  S  S  G  E  T  K  K  *  S  V  E  P  L  *  I  L  E  V  Q  L  R  E  K  K  P  G  T  F  A  I  G  L  V  H  *  *  E  S  Q  R  L  L  S  A  G  T  N  M  W  F  W  S  L  M  Y  I  T  G  L  K  S  R  F  S  H  R  *  F  F  P  Q  L  I  G  K  E  C  S  L  F  P  L  T  Y  *  R  P  L  V  Q  V  I  Q  *  I  I  L  L  L  L  T  H  N  C  L  *  M  C  P  N  C  Q  R  E  L  C  C  C  T  H  *  K  D  L  R  F  I  S  S  H  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101523" stop="101356"/>
                    <exon start="100440" stop="100411"/>
                    <exon start="98698" stop="98628"/>
                    <exon start="98542" stop="97921"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFHVTSLRRPTSLHDRMRDSDDDDYQDRDYDVAALANNLSQAFRYGIYNNDELDEARGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDKEIREQYTALVASPSPDTEETNIIRPSTNDDAAADEDDDLADTASSDQPEPKQSSDHPAPSSLSEDLHRATSNETIKPPEWVEWRENSNTIATSNQTSDSAGVADVVGPPLPNGDVKKESEAPKDTTRSKEENAHIPPTNVCTSNVKEGSSGDTSQPPESGGSQSASNASSSSVEKPPAGTVGSSSGETKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="97560" PGL_stop="98293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97560" e_stop="98293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="97560" e_stop="98293" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97560" stop="98293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATATAAAACGAAGATCCTTTCAATGTGTACAGCAACACAACTCCCTTTGGCAGTTTGGACACATCTAGAGGCAGTTGTGTGTTAGTAATAAAAGTATGATCTACTGAATCACCTGCACTAAAGGCCTTTAATAAGTGAGAGGAAAGAGAGAGCATTCTTTACCTATGAGTTGAGGAAAGAATCATCTGTGGCTAAATCGACTTTTAAGCCCAGTAATATACATCAGGCTCCAAAACCACATATTAGTCCCAGCCGATAGCAAGCGCTGAGACTCTCATCAGTGCACCAGACCAATAGCAAAAGTGCCAGGTTTTTTCTCCCGCAACTGCACCTCGAGAATTCACAGTGGTTCCACACTTCACTTTTTGGTTTCTCCACTAGATGATCCCACCGTTCCAGCAGGGGGCTTCTCCACACTACTTGAACTAGCATTGCTAGCGCTTTGGCTGCCACCTGATTCTGGAGGCTGTGAGGTATCACCTGATGATCCTTCTTTCACATTACTGGTGCACACATTAGTGGGTGGAATATGAGCATTTTCTTCTTTTGACCGAGTAGTATCCTTTGGAGCTTCTGATTCCTTTTTGACGTCGCCATTAGGTAAAGGAGGCCCGACCACATCAGCAACACCAGCTGAATCCGAGGTTTGATTGGATGTTGCAATTGTATTAGAGTTTTCTCGCCATTCAACCCATTCAGGAGGCTTAATGGTTTCATTACTTGTAGCACGA</gDNA_template>
            <first_frame> M  I  *  N  E  D  P  F  N  V  Y  S  N  T  T  P  F  G  S  L  D  T  S  R  G  S  C  V  L  V  I  K  V  *  S  T  E  S  P  A  L  K  A  F  N  K  *  E  E  R  E  S  I  L  Y  L  *  V  E  E  R  I  I  C  G  *  I  D  F  *  A  Q  *  Y  T  S  G  S  K  T  T  Y  *  S  Q  P  I  A  S  A  E  T  L  I  S  A  P  D  Q  *  Q  K  C  Q  V  F  S  P  A  T  A  P  R  E  F  T  V  V  P  H  F  T  F  W  F  L  H  *  M  I  P  P  F  Q  Q  G  A  S  P  H  Y  L  N  *  H  C  *  R  F  G  C  H  L  I  L  E  A  V  R  Y  H  L  M  I  L  L  S  H  Y  W  C  T  H  *  W  V  E  Y  E  H  F  L  L  L  T  E  *  Y  P  L  E  L  L  I  P  F  *  R  R  H  *  V  K  E  A  R  P  H  Q  Q  H  Q  L  N  P  R  F  D  W  M  L  Q  L  Y  *  S  F  L  A  I  Q  P  I  Q  E  A  *  W  F  H  Y  L  *  H   </first_frame>
            <second_frame>  *  Y  K  T  K  I  L  S  M  C  T  A  T  Q  L  P  L  A  V  W  T  H  L  E  A  V  V  C  *  *  *  K  Y  D  L  L  N  H  L  H  *  R  P  L  I  S  E  R  K  E  R  A  F  F  T  Y  E  L  R  K  E  S  S  V  A  K  S  T  F  K  P  S  N  I  H  Q  A  P  K  P  H  I  S  P  S  R  *  Q  A  L  R  L  S  S  V  H  Q  T  N  S  K  S  A  R  F  F  L  P  Q  L  H  L  E  N  S  Q  W  F  H  T  S  L  F  G  F  S  T  R  *  S  H  R  S  S  R  G  L  L  H  T  T  *  T  S  I  A  S  A  L  A  A  T  *  F  W  R  L  *  G  I  T  *  *  S  F  F  H  I  T  G  A  H  I  S  G  W  N  M  S  I  F  F  F  *  P  S  S  I  L  W  S  F  *  F  L  F  D  V  A  I  R  *  R  R  P  D  H  I  S  N  T  S  *  I  R  G  L  I  G  C  C  N  C  I  R  V  F  S  P  F  N  P  F  R  R  L  N  G  F  I  T  C  S  T  </second_frame>
            <third_frame>   D  I  K  R  R  S  F  Q  C  V  Q  Q  H  N  S  L  W  Q  F  G  H  I  *  R  Q  L  C  V  S  N  K  S  M  I  Y  *  I  T  C  T  K  G  L  *  *  V  R  G  K  R  E  H  S  L  P  M  S  *  G  K  N  H  L  W  L  N  R  L  L  S  P  V  I  Y  I  R  L  Q  N  H  I  L  V  P  A  D  S  K  R  *  D  S  H  Q  C  T  R  P  I  A  K  V  P  G  F  F  S  R  N  C  T  S  R  I  H  S  G  S  T  L  H  F  L  V  S  P  L  D  D  P  T  V  P  A  G  G  F  S  T  L  L  E  L  A  L  L  A  L  W  L  P  P  D  S  G  G  C  E  V  S  P  D  D  P  S  F  T  L  L  V  H  T  L  V  G  G  I  *  A  F  S  S  F  D  R  V  V  S  F  G  A  S  D  S  F  L  T  S  P  L  G  K  G  G  P  T  T  S  A  T  P  A  E  S  E  V  *  L  D  V  A  I  V  L  E  F  S  R  H  S  T  H  S  G  G  L  M  V  S  L  L  V  A  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97832" stop="98095"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSHQCTRPIAKVPGFFSRNCTSRIHSGSTLHFLVSPLDDPTVPAGGFSTLLELALLALWLPPDSGGCEVSPDDPSFTLLVHTLVGGI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="118122" PGL_stop="112620"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118122" e_stop="117920"/>
            <exon e_start="114539" e_stop="114436"/>
            <exon e_start="113064" e_stop="112978"/>
            <exon e_start="112834" e_stop="112759"/>
            <exon e_start="112650" e_stop="112620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="0.970"/>
          <exon-intron don_prob="0.944" acc_prob="0.837" e_score="0.952"/>
          <exon-intron don_prob="0.973" acc_prob="0.964" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="0.902" e_score="0.961"/>
          <exon-only e_score="0.839"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="118122" e_stop="117920" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="117919" i_stop="114540" i_length="3380"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="114539" e_stop="114436" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.837">
            <gDNA_intron_boundary i_start="114435" i_stop="113065" i_length="1371"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="113064" e_stop="112978" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.964">
            <gDNA_intron_boundary i_start="112977" i_stop="112835" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="112834" e_stop="112759" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.902">
            <gDNA_intron_boundary i_start="112758" i_stop="112651" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="0.839">
            <gDNA_exon_boundary e_start="112650" e_stop="112620" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118122" stop="117920"/>
              <exon start="114539" stop="114436"/>
              <exon start="113064" stop="112978"/>
              <exon start="112834" stop="112759"/>
              <exon start="112650" stop="112620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATAACAATTGAACCGAATCCAATCTTATCAAAGACTGCTCCCCACCTTTTTCTAGGGCTTCCTGGGTTCAAGATCATTGTTGGGGTTGTTTTCTTTTTGTTCCTAGATCCAAATTGTTGAAAATTCTCTTCTGGGTCGGTTCTTGATTCTGAAAAAATGGCTATGTTTTGGCGTATGGCTGGCCTCTCCACTGCTTCTCCA : GTGGAGACAATTTTGGATAAGGAAAATTTTGCACTGGATGAGCTCTTGGACGAGGATGAAATAATTCAAGAATGTAAAGCTCTTAATGGACGCCTTATTAACTT : TCTGCGAGAAAGAGCTCAAGTTGAACAACTTGTCAGGTACATAGTGGAAGAGGCTCCAGAAGATGCAGAGAAGAAACGAACTTTTAA : GTTTCCTTTTATTGCTTGTGAAATCTTTACATGCGAGGTGGACATAATTCTTAAAGCATTGGTTGAGAATGAGGAG : CTAATGAACCTGCTATTCTCATTTTTGGAAC</gDNA_template>
            <first_frame> *  *  Q  L  N  R  I  Q  S  Y  Q  R  L  L  P  T  F  F  *  G  F  L  G  S  R  S  L  L  G  L  F  S  F  C  S  *  I  Q  I  V  E  N  S  L  L  G  R  F  L  I  L  K  K  W  L  C  F  G  V  W  L  A  S  P  L  L  L  Q :   W  R  Q  F  W  I  R  K  I  L  H  W  M  S  S  W  T  R  M  K  *  F  K  N  V  K  L  L  M  D  A  L  L  T   : F  C  E  K  E  L  K  L  N  N  L  S  G  T  *  W  K  R  L  Q  K  M  Q  R  R  N  E  L  L   : S  F  L  L  L  L  V  K  S  L  H  A  R  W  T  *  F  L  K  H  W  L  R  M  R  S :   *  *  T  C  Y  S  H  F  W  N </first_frame>
            <second_frame>  D  N  N  *  T  E  S  N  L  I  K  D  C  S  P  P  F  S  R  A  S  W  V  Q  D  H  C  W  G  C  F  L  F  V  P  R  S  K  L  L  K  I  L  F  W  V  G  S  *  F  *  K  N  G  Y  V  L  A  Y  G  W  P  L  H  C  F  S   : S  G  D  N  F  G  *  G  K  F  C  T  G  *  A  L  G  R  G  *  N  N  S  R  M  *  S  S  *  W  T  P  Y  *  L  :  S  A  R  K  S  S  S  *  T  T  C  Q  V  H  S  G  R  G  S  R  R  C  R  E  E  T  N  F  *  :  V  S  F  Y  C  L  *  N  L  Y  M  R  G  G  H  N  S  *  S  I  G  *  E  *  G   : A  N  E  P  A  I  L  I  F  G   </second_frame>
            <third_frame>   I  T  I  E  P  N  P  I  L  S  K  T  A  P  H  L  F  L  G  L  P  G  F  K  I  I  V  G  V  V  F  F  L  F  L  D  P  N  C  *  K  F  S  S  G  S  V  L  D  S  E  K  M  A  M  F  W  R  M  A  G  L  S  T  A  S  P  :  V  E  T  I  L  D  K  E  N  F  A  L  D  E  L  L  D  E  D  E  I  I  Q  E  C  K  A  L  N  G  R  L  I  N  F :   L  R  E  R  A  Q  V  E  Q  L  V  R  Y  I  V  E  E  A  P  E  D  A  E  K  K  R  T  F  K :   F  P  F  I  A  C  E  I  F  T  C  E  V  D  I  I  L  K  A  L  V  E  N  E  E  :  L  M  N  L  L  F  S  F  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0162I09.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118000" stop="117920"/>
                    <exon start="114539" stop="114436"/>
                    <exon start="113064" stop="112978"/>
                    <exon start="112834" stop="112759"/>
                    <exon start="112650" stop="112621"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFSSGSVLDSEKMAMFWRMAGLSTASPVETILDKENFALDELLDEDEIIQECKALNGRLINFLRERAQVEQLVRYIVEEAPEDAEKKRTFKFPFIACEIFTCEVDIILKALVENEELMNLLFSFLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="119895" PGL_stop="120051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119895" e_stop="120051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="119895" e_stop="120051" e_length="157"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119895" stop="120051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAATAAAATATATCAAAATTTTTGCCAACATAAAAATAAATATTGACCTCACAAGAAAGTACAGAGAAGGCTATTCCTCCTTTTAGCATGAGCCGAAGTGGACAATGACCAACAAGCTCAGTATCACGAATGCTTCAAAGGATGCACAAAAACTC</gDNA_template>
            <first_frame> A  N  K  I  Y  Q  N  F  C  Q  H  K  N  K  Y  *  P  H  K  K  V  Q  R  R  L  F  L  L  L  A  *  A  E  V  D  N  D  Q  Q  A  Q  Y  H  E  C  F  K  G  C  T  K  T  </first_frame>
            <second_frame>  R  I  K  Y  I  K  I  F  A  N  I  K  I  N  I  D  L  T  R  K  Y  R  E  G  Y  S  S  F  *  H  E  P  K  W  T  M  T  N  K  L  S  I  T  N  A  S  K  D  A  Q  K  L </second_frame>
            <third_frame>   E  *  N  I  S  K  F  L  P  T  *  K  *  I  L  T  S  Q  E  S  T  E  K  A  I  P  P  F  S  M  S  R  S  G  Q  *  P  T  S  S  V  S  R  M  L  Q  R  M  H  K  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0162I09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 277 chains have been computed
$ 
$ memory statistics:
$ 2202648 bytes spliced alignments in total
$ 179 spliced alignments have been stored
$ 12305 bytes was the average size of a spliced alignment
$ 37952 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 2108 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 323 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:34:11
-->
