<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:28:34"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443600" ref_strand="+" ref_description="SGN-E443600 [cSTA-39-C23]">
      <seq>aatttgtattacaaattacaatttacaactattagtagagtgcatagtttacgcagccaccttctaggaagggttctgtttcaactaagcctcaaatgtaatactaatagttgtatagtcccgtaaattctttctctaactcagctatagattgaccgtaatcaactactggtcttggtaaagctcgttgacgatcttgaagttccatgccatcgtcactaccacatccaatggcggaatctatgaaaagttcaaattgactatccaactttggaagtccttgatttctccgctcagcatttattcaatctcttaacaacaccgatatctccaaactgtcttctgctaacgaatatctgtggtctccaatttgaaatcttgccgcgctgaaagctgccttcgaagcaactgatgatccttgaattgcaagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="6009" stop="7033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6297" g_stop="6725" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E443600" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6297" e_stop="6725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTAATAAATTACAATTTCAATTTACAACTATTAGTAGAGTACATAGCTTACGCAGCCACCTTCTAGGAAGGGTTCTGTTTCAACTATGTCTCGAATGTAATATTAATAGTTGTATAGTCCCGTAAATCCTCTTTCTAACTCAGCTATGGATTGATTGTGATCAACTTCTGGTCTTGGTAAAGCTCGTTGACGATCTTGAATTTCGATGCCATCATCACTACCATATCCAATAGCTGAATCTATGAAAAGTTCAAATTGACTATCTAACTTTGGAAGTCCTTGATTTCTACGCTCAGCATTTATCCAGTCTCTAAATAACACTGATATCTCCAGGGTGTGTTCTGCTAACGAATATCTGTGGTCTCCAATTTGAAATCTTGTCGCGCTGAAAGCTGCCTCCGAAGCTACTGATGATCCTTGAATT</genome_strand>
        <mrna_strand>AATTTGT-ATTA--CA-AATTACAATTTACAACTATTAGTAGAGTGCATAGTTTACGCAGCCACCTTCTAGGAAGGGTTCTGTTTCAACTAAGCCTCAAATGTAATACTAATAGTTGTATAGTCCCGTAAATTCTTTCTCTAACTCAGCTATAGATTGACCGTAATCAACTACTGGTCTTGGTAAAGCTCGTTGACGATCTTGAAGTTCCATGCCATCGTCACTACCACATCCAATGGCGGAATCTATGAAAAGTTCAAATTGACTATCCAACTTTGGAAGTCCTTGATTTCTCCGCTCAGCATTTATTCAATCTCTTAACAACACCGATATCTCCAAACTGTCTTCTGCTAACGAATATCTGTGGTCTCCAATTTGAAATCTTGCCGCGCTGAAAGCTGCCTTCGAAGCAACTGATGATCCTTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342749" ref_strand="+" ref_description="SGN-E342749 [cTOF-7-A20]">
      <seq>aaacttggtcttgactcttctaataaatgtgaatttgttaaatatcttgaacagggtacagatgatattacaaacgataatggtataccggaactattgaactggtggagaaatcgtggagctcaatatccaaaacttagtaggatggtgaaggatgtgcttgcaattcaaggatcatcagtagcttcggaggcagctttcagcgcggcaagatttcaaattggagaccacagatattcgttagcagaagacagcctggagatatcagtgttatttagagattggataaatgctgagcgtagaaatcaaggacttccaaagttagatagtcaatttgaacttttcatagattcaactattggatgtggtagtgacgatggcatcgaaattcaagatcgtcaacgagctttaccaagaccagaagttgatcacaatcaatccctagctgagttagaaagaggatttacgggactatacaactattagtattacattcgagacatagttgaaacagaacccttcctagaaggtggctgcgtaagctatgtactctactaatagttgtaaattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="7189" stop="6015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6889" g_stop="6315" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E342749" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6889" e_stop="6315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTTAAATATCTTGAACAGGGTACAGATGATATTACAAACGATAATGGTATATCGGAACTATTGAACTGGTGGAGGAATCGTGGAGCTCAATATCCAAAACTTAGTAGGATGGTGAAGGATGTGCTTGCAATTCAAGGATCATCAGTAGCTTCGGAGGCAGCTTTCAGCGCGACAAGATTTCAAATTGGAGACCACAGATATTCGTTAGCAGAACACACCCTGGAGATATCAGTGTTATTTAGAGACTGGATAAATGCTGAGCGTAGAAATCAAGGACTTCCAAAGTTAGATAGTCAATTTGAACTTTTCATAGATTCAGCTATTGGATATGGTAGTGATGATGGCATCGAAATTCAAGATCGTCAACGAGCTTTACCAAGACCAGAAGTTGATCACAATCAATCCATAGCTGAGTTAGAAAGAGGATTTACGGGACTATACAACTATTAATATTACATTCGAGACATAGTTGAAACAGAACCCTTCCTAGAAGGTGGCTGCGTAAGCTATGTACTCTACTAATAGTTGTAAATTGAAAT</genome_strand>
        <mrna_strand>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTTAAATATCTTGAACAGGGTACAGATGATATTACAAACGATAATGGTATACCGGAACTATTGAACTGGTGGAGAAATCGTGGAGCTCAATATCCAAAACTTAGTAGGATGGTGAAGGATGTGCTTGCAATTCAAGGATCATCAGTAGCTTCGGAGGCAGCTTTCAGCGCGGCAAGATTTCAAATTGGAGACCACAGATATTCGTTAGCAGAAGACAGCCTGGAGATATCAGTGTTATTTAGAGATTGGATAAATGCTGAGCGTAGAAATCAAGGACTTCCAAAGTTAGATAGTCAATTTGAACTTTTCATAGATTCAACTATTGGATGTGGTAGTGACGATGGCATCGAAATTCAAGATCGTCAACGAGCTTTACCAAGACCAGAAGTTGATCACAATCAATCCCTAGCTGAGTTAGAAAGAGGATTTACGGGACTATACAACTATTAGTATTACATTCGAGACATAGTTGAAACAGAACCCTTCCTAGAAGGTGGCTGCGTAAGCTATGTACTCTACTAATAGTTGTAAATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426698" ref_strand="-" ref_description="SGN-E426698 [STM-47-E3]">
      <seq>taatactaatagttgtatagtcccgtaaattctttctctaactcagctatagattgaccgtaatcaactactggtcttggtaaagctcgttgacgatcttgaagttccatgccatcgtcactaccacatccaatggcggaatctatgaaaagttcaaattgactatccaactttggaagtccttgatttctccgctcagcatttatccaatctctaaacaacaccgatatctccaaactgtcttctgctaacgaatatctgtggtctccaatttgaaatcttgccgcgctgaaagctgcctccgaagcaactgatgatccttgaattgcaagcacgtccttcaccatcctactaagttttggaaattgagttccacgagccctccaccagttcaataattgtggtataccttcatcgtttgtaatattatctgaaccctgttcaagatatttaacaaattcacatttattagaagagtcaagaccaagtttatgtttcactctaccatgggcacctacctgaggcatagacatttgaggattttcaacattatctaaagaacaatatttatcataaaaaaaaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="6099" stop="7275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6399" g_stop="6974" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E426698" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426698" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6399" e_stop="6974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATTAATAGTTGTATAGTCCCGTAAATCCTCTTTCTAACTCAGCTATGGATTGATTGTGATCAACTTCTGGTCTTGGTAAAGCTCGTTGACGATCTTGAATTTCGATGCCATCATCACTACCATATCCAATAGCTGAATCTATGAAAAGTTCAAATTGACTATCTAACTTTGGAAGTCCTTGATTTCTACGCTCAGCATTTATCCAGTCTCTAAATAACACTGATATCTCCAGGGTGTGTTCTGCTAACGAATATCTGTGGTCTCCAATTTGAAATCTTGTCGCGCTGAAAGCTGCCTCCGAAGCTACTGATGATCCTTGAATTGCAAGCACATCCTTCACCATCCTACTAAGTTTTGGATATTGAGCTCCACGATTCCTCCACCAGTTCAATAGTTCCGATATACCATTATCGTTTGTAATATCATCTGTACCCTGTTCAAGATATTTAACAAATTCACATTTATTAGAAGAGTCAAGACCAAGTTTATGTTTCACTCGTCCATGAGCACCTACTTGATTCGTAGACGTTTGAGGATTTTCAACATTATCTAAGAATGAATATTTATCATAC</genome_strand>
        <mrna_strand>TAATACTAATAGTTGTATAGTCCCGTAAATTCTTTCTCTAACTCAGCTATAGATTGACCGTAATCAACTACTGGTCTTGGTAAAGCTCGTTGACGATCTTGAAGTTCCATGCCATCGTCACTACCACATCCAATGGCGGAATCTATGAAAAGTTCAAATTGACTATCCAACTTTGGAAGTCCTTGATTTCTCCGCTCAGCATTTATCCAATCTCTAAACAACACCGATATCTCCAAACTGTCTTCTGCTAACGAATATCTGTGGTCTCCAATTTGAAATCTTGCCGCGCTGAAAGCTGCCTCCGAAGCAACTGATGATCCTTGAATTGCAAGCACGTCCTTCACCATCCTACTAAGTTTTGGAAATTGAGTTCCACGAGCCCTCCACCAGTTCAATAATTGTGGTATACCTTCATCGTTTGTAATATTATCTGAACCCTGTTCAAGATATTTAACAAATTCACATTTATTAGAAGAGTCAAGACCAAGTTTATGTTTCACTCTACCATGGGCACCTACCTGAGGCATAGACATTTGAGGATTTTCAACATTATCTAAAGAACAATATTTATCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567920" ref_strand="+" ref_description="SGN-E567920 [12121]">
      <seq>gtagtagtagaattaatcaatttaaagagctttgtaatgcatgtaaacttccgtttagaaaagttccgaagcatgtaaaaactagatggaattccttttatgaaatgcttgaagttgcttatacatataaagagcctattactatgcaatttaatagtcataatgcttatcctgaatttaaacttaatgatagtgattggaatgaagtaaatgaacttagaatatttttgaaatcgttttatgatgctactaaaattttttctggaatgtattatcctactatttctgaaattttaatacatatatgtgagatttcatatatctttgctgaatataaaacacatgaattatttaccattgctattgaagttatgattacaaaatttaagaaatatttttttcctatccctcaaatttatttaactgcaattcttttcaaccccgaatataaagaatatggtgcaaaagctttagttgaatgcatttatcaaaatttagatattaaaccagaagaaacactcgatttggtaacatgtcaaaatagtataaaattacttgctaaagaaatgtatgataaatattgttctttagataatgttgaaaatcctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="7842" stop="6631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7542" g_stop="6931" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E567920" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7542" e_stop="6931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTAGTAGAATTAATCAATTTAAAGAACTTTGTAAGGCATTTAAACTTCCGTTTAAAAAAGTTCCGAAGCATGTAAAAACTAGATGGAATTCCTTTTATGATATGCTTGAAGTTGCTTATGCATATAGGCAACCTATTACTACGCTATTTAATAATCATAATGCTTATCCTGAATTTAAAATTAATGATAGTGATTGGGATGAAGTAAATGAACTTAGAATATTTTTGAAATCATTTTATGATGCTAATAAAAAATTTTCTGGAATATATTATCCTACTATTTCTGAAATTTTAATACACATATGTGAGATTTCATCTATTTTTTCTGAATATAAAACAAATACTTTATTCACCTCTGCTATTGAAGTTATGATTACAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAATTTATTTAACTGCACTTCTTTTCAACCCCGAATATAAAGAATATGGTGCAAAAGCTTTAGTTGAATGCATTTATCAGAATTTAGATATTCAACCTGAAGAAGAACCTGATTTGGTAACATGTCAAAATAGTATAAAATACTTTGCAAAAGAAATGTATGATAAATATTCATTCTTAGATAATGTTGAAAATCCTCAAA</genome_strand>
        <mrna_strand>GTAGTAGTAGAATTAATCAATTTAAAGAGCTTTGTAATGCATGTAAACTTCCGTTTAGAAAAGTTCCGAAGCATGTAAAAACTAGATGGAATTCCTTTTATGAAATGCTTGAAGTTGCTTATACATATAAAGAGCCTATTACTATGCAATTTAATAGTCATAATGCTTATCCTGAATTTAAACTTAATGATAGTGATTGGAATGAAGTAAATGAACTTAGAATATTTTTGAAATCGTTTTATGATGCTACTAAAATTTTTTCTGGAATGTATTATCCTACTATTTCTGAAATTTTAATACATATATGTGAGATTTCATATATCTTTGCTGAATATAAAACACATGAATTATTTACCATTGCTATTGAAGTTATGATTACAAAATTTAAGAAATATTTTTTTCCTATCCCTCAAATTTATTTAACTGCAATTCTTTTCAACCCCGAATATAAAGAATATGGTGCAAAAGCTTTAGTTGAATGCATTTATCAAAATTTAGATATTAAACCAGAAGAAACACTCGATTTGGTAACATGTCAAAATAGTATAAAATTACTTGCTAAAGAAATGTATGATAAATATTGTTCTTTAGATAATGTTGAAAATCCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481787" ref_strand="+" ref_description="SGN-E481787 [cSTD-19-D23]">
      <seq>aaaatttgtcaaaagaaaaaaactggaatgtatattgctactactgtgttggaaattttagattttttcggtctttgtgataaagtcattagtattactttagataatgcttctgctaatttaaatgctattaatatgctagaaactagactttgtcctattagtaaatatgcttttcatgttagatgtgctgcgcatatattaaatttggttgttagtgacggtgtgaaattatttgaaaatagttgtgataaagttgataatgcttgtttttatatttttcatatgaatagtagtagtagaattaatcaatttaaagagctttgtaatgcatgtaaacttccgtttagaaaagttccgaagcatgtaaaaactagatggaattccttttatgaaatgcttgaagttgcttatacatataaagagcctattactatgcaatttaatagtcataatgcttatcctgaatttaaacttaatgatagtgattggaatgaagtaaatgaacttagaatatttttgaaatcgttttatgatgctactaaaattttttctggaatgtattatcctactatttctgaaattttaatacatatatgtgagatttcatatatctttgctgaatataaaacacatgaattatttaccattgctattgaagttatgattacaaaatttaagaaatatttttttcctatccctcaaatttatttaaactgcattcttttcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="8134" stop="6802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7834" g_stop="7102" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E481787" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7834" e_stop="7102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTCAAAAGAAAAAAACCGGAATTTATATTGCTACTACTATGTTGGAAATTTTAGATTTTTTTGGTCTTTGTGATAAAGTTGTTAGTATTACTTTAGATAATGCCTCTGCTAATTTAAATGCTATTAATATGCTAGAACCTAGACTTTGTCCTATTAGTAAATATGTTTTTCATGTTAGATGTGCCGCGCATATATTAAATTTGGTTGGTAGTGACGGTGTGAAATTATTTGAAAATAGTTGTGATAAAATTGATAATGCTTGTTTTTACATTTTTCATATGAATAGTAGTAGTAGAATTAATCAATTTAAAGAACTTTGTAAGGCATTTAAACTTCCGTTTAAAAAAGTTCCGAAGCATGTAAAAACTAGATGGAATTCCTTTTATGATATGCTTGAAGTTGCTTATGCATATAGGCAACCTATTACTACGCTATTTAATAATCATAATGCTTATCCTGAATTTAAAATTAATGATAGTGATTGGGATGAAGTAAATGAACTTAGAATATTTTTGAAATCATTTTATGATGCTAATAAAAAATTTTCTGGAATATATTATCCTACTATTTCTGAAATTTTAATACACATATGTGAGATTTCATCTATTTTTTCTGAATATAAAACAAATACTTTATTCACCTCTGCTATTGAAGTTATGATTACAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAATTTATTT-AACTGCACTTCTTTTCAACC</genome_strand>
        <mrna_strand>AAAATTTGTCAAAAGAAAAAAACTGGAATGTATATTGCTACTACTGTGTTGGAAATTTTAGATTTTTTCGGTCTTTGTGATAAAGTCATTAGTATTACTTTAGATAATGCTTCTGCTAATTTAAATGCTATTAATATGCTAGAAACTAGACTTTGTCCTATTAGTAAATATGCTTTTCATGTTAGATGTGCTGCGCATATATTAAATTTGGTTGTTAGTGACGGTGTGAAATTATTTGAAAATAGTTGTGATAAAGTTGATAATGCTTGTTTTTATATTTTTCATATGAATAGTAGTAGTAGAATTAATCAATTTAAAGAGCTTTGTAATGCATGTAAACTTCCGTTTAGAAAAGTTCCGAAGCATGTAAAAACTAGATGGAATTCCTTTTATGAAATGCTTGAAGTTGCTTATACATATAAAGAGCCTATTACTATGCAATTTAATAGTCATAATGCTTATCCTGAATTTAAACTTAATGATAGTGATTGGAATGAAGTAAATGAACTTAGAATATTTTTGAAATCGTTTTATGATGCTACTAAAATTTTTTCTGGAATGTATTATCCTACTATTTCTGAAATTTTAATACATATATGTGAGATTTCATATATCTTTGCTGAATATAAAACACATGAATTATTTACCATTGCTATTGAAGTTATGATTACAAAATTTAAGAAATATTTTTTTCCTATCCCTCAAATTTATTTAAACTGCA-TTCTTTTCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561175" ref_strand="+" ref_description="SGN-E561175 [17126]">
      <seq>tgattatttaactgttactgcgcattggactgattataattggaatttacaaaaaagaattattggttataaaatttgtcaaaagaaaaaaactggaatgtatattgctactactgtgttggaaattttagattttttcggtctttgtgataaagtcattagtattactttagataatgcttctgctaatttaaatgctattaatatgctagaaactagactttgtcctattagtaaatatgcttttcatgttagatgtgctgcgcatatattaaatttggttgttagtgacggtgtgaaattatttgaaaatagttgtgataaagttgataatgcttgtttttatatttttcatatgaatagtagtagtagaattaatcaatttaaagagctttgtaatgcatgtaaacttccgtttagaaaagttccgaagcatgtaaaaactagatggaattccttttatgaaatgcttgaagttgcttatacatataaagagcctattactatgcaatttaatagtcataatgcttatcctgaatttaaacttaatgatagtgattggaatgaagtaaatgaacttagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="8204" stop="7021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7904" g_stop="7321" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E561175" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7904" e_stop="7321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTATTTAACTGTTACTGCGCATTGGATCGATTATAATTGGAATTTACAAAAAAGAATTATTGGTTATAAAATTTGTCAAAAGAAAAAAACCGGAATTTATATTGCTACTACTATGTTGGAAATTTTAGATTTTTTTGGTCTTTGTGATAAAGTTGTTAGTATTACTTTAGATAATGCCTCTGCTAATTTAAATGCTATTAATATGCTAGAACCTAGACTTTGTCCTATTAGTAAATATGTTTTTCATGTTAGATGTGCCGCGCATATATTAAATTTGGTTGGTAGTGACGGTGTGAAATTATTTGAAAATAGTTGTGATAAAATTGATAATGCTTGTTTTTACATTTTTCATATGAATAGTAGTAGTAGAATTAATCAATTTAAAGAACTTTGTAAGGCATTTAAACTTCCGTTTAAAAAAGTTCCGAAGCATGTAAAAACTAGATGGAATTCCTTTTATGATATGCTTGAAGTTGCTTATGCATATAGGCAACCTATTACTACGCTATTTAATAATCATAATGCTTATCCTGAATTTAAAATTAATGATAGTGATTGGGATGAAGTAAATGAACTTAGAA</genome_strand>
        <mrna_strand>TGATTATTTAACTGTTACTGCGCATTGGACTGATTATAATTGGAATTTACAAAAAAGAATTATTGGTTATAAAATTTGTCAAAAGAAAAAAACTGGAATGTATATTGCTACTACTGTGTTGGAAATTTTAGATTTTTTCGGTCTTTGTGATAAAGTCATTAGTATTACTTTAGATAATGCTTCTGCTAATTTAAATGCTATTAATATGCTAGAAACTAGACTTTGTCCTATTAGTAAATATGCTTTTCATGTTAGATGTGCTGCGCATATATTAAATTTGGTTGTTAGTGACGGTGTGAAATTATTTGAAAATAGTTGTGATAAAGTTGATAATGCTTGTTTTTATATTTTTCATATGAATAGTAGTAGTAGAATTAATCAATTTAAAGAGCTTTGTAATGCATGTAAACTTCCGTTTAGAAAAGTTCCGAAGCATGTAAAAACTAGATGGAATTCCTTTTATGAAATGCTTGAAGTTGCTTATACATATAAAGAGCCTATTACTATGCAATTTAATAGTCATAATGCTTATCCTGAATTTAAACTTAATGATAGTGATTGGAATGAAGTAAATGAACTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447237" ref_strand="+" ref_description="SGN-E447237 [cSTA-25-K24]">
      <seq>gttcaaggtgaattaaatacttcgaacccaagtggtcctcttacacatcgaacctataataaggatcgtgatcgtgaaaattttgctaaaatggttgttgtttgtggtttaccttttagttttggagaacatccgggttttattgcatatattcgtgatacatataatcctagttttaaaggtttatcaagaagcatggtaaaaagagatatttttgaatttcaagaaaaacattgtcaatatttgcgtgcctattttgaaataatggattgtagagttgctattaccactgatatgggtcgtagtcctaatggttttgattatttaactgttactgcgcattggactgattataattggaatttacaaaaaagaattattggttataaaatttgtcaaaagaaaaaaactggaatgtatattgctactactgtgttggaaattttagattttttcggtctttgtgataaagtcattagtattactttagataatgcttctgctaatttaaatgctattaatatgctagaaactagactttgtcctattagtaaatatgcttttcatgttagatgtgctgcgcatatattaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="8521" stop="7325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8221" g_stop="7625" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E447237" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8221" e_stop="7625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAAGTGAGTTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAACAAGGATCGTGATCGTGAAAACTTTGCTAAAATGGTTGTTGTTTGTGGTTTACCTTTTAGTTTTGGAGAACATCCGGGTTTTATTGCTTATATTCGTGAAACATATAATCCTAGTTTTCAAGGTTTATCAAGAAGCATGGTAAAAAGAGATATTTTTGAATTTCAAGAAAAACATTGTCAATATTTACGTGCCTATTTTGAACTAATGGATTGTAGAGTTGCTATTACTACTGATATGGGTCGTAGTCCTAATGGTTTTGATTATTTAACTGTTACTGCGCATTGGATCGATTATAATTGGAATTTACAAAAAAGAATTATTGGTTATAAAATTTGTCAAAAGAAAAAAACCGGAATTTATATTGCTACTACTATGTTGGAAATTTTAGATTTTTTTGGTCTTTGTGATAAAGTTGTTAGTATTACTTTAGATAATGCCTCTGCTAATTTAAATGCTATTAATATGCTAGAACCTAGACTTTGTCCTATTAGTAAATATGTTTTTCATGTTAGATGTGCCGCGCATATATTAAATTTG</genome_strand>
        <mrna_strand>GTTCAAGGTGAATTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAATAAGGATCGTGATCGTGAAAATTTTGCTAAAATGGTTGTTGTTTGTGGTTTACCTTTTAGTTTTGGAGAACATCCGGGTTTTATTGCATATATTCGTGATACATATAATCCTAGTTTTAAAGGTTTATCAAGAAGCATGGTAAAAAGAGATATTTTTGAATTTCAAGAAAAACATTGTCAATATTTGCGTGCCTATTTTGAAATAATGGATTGTAGAGTTGCTATTACCACTGATATGGGTCGTAGTCCTAATGGTTTTGATTATTTAACTGTTACTGCGCATTGGACTGATTATAATTGGAATTTACAAAAAAGAATTATTGGTTATAAAATTTGTCAAAAGAAAAAAACTGGAATGTATATTGCTACTACTGTGTTGGAAATTTTAGATTTTTTCGGTCTTTGTGATAAAGTCATTAGTATTACTTTAGATAATGCTTCTGCTAATTTAAATGCTATTAATATGCTAGAAACTAGACTTTGTCCTATTAGTAAATATGCTTTTCATGTTAGATGTGCTGCGCATATATTAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447233" ref_strand="+" ref_description="SGN-E447233 [cSTA-25-K12]">
      <seq>ttttattgcatatattcgtgatacatataatcctagttttaaaggtttatcaagaagcatggtcaaaagagatatttttgaatttcaagaaaaacattgtcaatatttgcgtgcctattttgaaataatggattgtagagttgctattaccactgatatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="8384" stop="7622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8084" g_stop="7922" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E447233" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8084" e_stop="7922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTGCTTATATTCGTGAAACATATAATCCTAGTTTTCAAGGTTTATCAAGAAGCATGGTAAAAAGAGATATTTTTGAATTTCAAGAAAAACATTGTCAATATTTACGTGCCTATTTTGAACTAATGGATTGTAGAGTTGCTATTACTACTGATATGGGT</genome_strand>
        <mrna_strand>TTTTATTGCATATATTCGTGATACATATAATCCTAGTTTTAAAGGTTTATCAAGAAGCATGGTCAAAAGAGATATTTTTGAATTTCAAGAAAAACATTGTCAATATTTGCGTGCCTATTTTGAAATAATGGATTGTAGAGTTGCTATTACCACTGATATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438066" ref_strand="+" ref_description="SGN-E438066 [cSTA-6-E3]">
      <seq>acattttaaatatacatctggtgggagtggaggttcaacggggggattaaaaaaacatttgattaataagcatagtaaagagtggtttgcatatatatcttctcttaatgtttgtgaaaattctaacattgaaacatcggttagagggtcaaatatggttcaaggtgaattaaatacttcgaacccaagtggtcctcttacacatcgaacctataataaggatcgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="8678" stop="7850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8378" g_stop="8150" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E438066" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8378" e_stop="8150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTTAAATATACATCTGGTGGGACGGGAGGTTCAACGGGGGGATTAAAAAAACATTTGATTAACAAGCATAGTAAAGAGCGGTTTGCATATATGTCTTCTCTTGAAGTTGTTGGAAATTGTAATGTTGAAGAATCGGTTAGAGGATCAAATATGGTTCAAAGTGAGTTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAACAAGGATCGTGAT</genome_strand>
        <mrna_strand>ACATTTTAAATATACATCTGGTGGGAGTGGAGGTTCAACGGGGGGATTAAAAAAACATTTGATTAATAAGCATAGTAAAGAGTGGTTTGCATATATATCTTCTCTTAATGTTTGTGAAAATTCTAACATTGAAACATCGGTTAGAGGGTCAAATATGGTTCAAGGTGAATTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAATAAGGATCGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E623014" ref_strand="+" ref_description="SGN-E623014 [73387]">
      <seq>cttctgattcaaaaacagatagcaaatcaaagagacgaacacacagtaattcatatatgattcgtcctcgaaccctactgttttactactcaaactcatcatcaatctctcacatttcacacagatggatttcttccacaacgcaactccatggttcatggatcaacaatattaaaggtgtattcaccggccaaaaatcctcccccgatgccgccaaagtacccatttccgagtcattcactctccttcgatttgcggatgaattgggcagagcaaagaagttggggactctgaagcagtatgtagtagggagaggtagtgaagttacatttgctgaagcttttgagaagcagcaagctattcttcaatatcttggtgcattggatcccactggagagaatcttcaaacaattcaaaagcaacaggcagcaaaacattgcaaatgcacaatacgttgatgtcgagaatatgttggcaaagtttacttgggcaaaagaagcacaaatgaaacttgagaagcatgaaggaagaagggaagccattgccaaagagcatggccgaggttcaaaagttgatgggttcatccccgctggatgttgcacgatcaaacatggctaagagtgggcaaacttagtaggaatgcattctgtccttgtggttccaaggaagagataccaaaaggtgttgcggggaaggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="14698" stop="9801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14398" g_stop="14160" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14159" i_stop="14037" i_length="123">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14036" g_stop="13888" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="398" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13887" i_stop="11114" i_length="2774">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11113" g_stop="10952" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="562" r_length="164" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10951" i_stop="10224" i_length="728">
            <donor d_prob="0.884" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10223" g_stop="10108" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="680" r_length="118" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E623014" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14398" e_stop="14160"/>
          <exon e_start="14036" e_stop="13888"/>
          <exon e_start="11113" e_stop="10952"/>
          <exon e_start="10223" e_stop="10108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCGATTCAAAAACAGA-AGCAAATCAAAGAGACGAACTCACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACT-C--------ATCATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGCTTCATGGATCAACAAGATTAAAGGTGTATTCACCGGCCAAAAAACCTCCACCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTCGTAAGTTTTATGCACCACTTTAACTATTAGTAAATGTAGATTAGAGGTGGAGCCAAGATTTAAAGTTTATGAGTTTATTCTAGTTTTCTTAAGTTATTGTGTTATAACTCTGTTTGAATTTAGGATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTGGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAGGTTTATACCCATTTACTTTAGCTCTCTCTATTTTAATGTGGTTAATCCTGTAGTATTCTGATTAAATGCCAAGTGTATTAACAAATACTTTATGTAGTTATTGTACTGTTCCCTCTGGTTTCTTTTTGTCTCTTTGGATTCTAGCTAAGTGGAATGCTTATATCCGTTATAGATTCATAAAGCAGTTGGATTCGTTATAAACATACCTACGAAGCGATTGACTAGGAGTGTTGAGTTGAATGATGGAGTTTAGGGGTAACCGTTGATGTTTTTCTTGGTCTGTTTTAAAGCTTTAGTTCCTCTACGCACATAATAAAGTATTGTTAAGTGCAGTTGGGAGGAGGAAAATGATCAGGAAGTAGATAAAGCTGCTCATCCTTTATGCAGAATTGAAAAATTGAAGGTGCTAGGCGATAGACCTAATTCTTTGAAGTGGGGACCAGAAGAAATGGATAATAGTTTCTATTAATTTACATGACAAACTTAAATGATATTACAACAGTTATGCAAACAGAGTAAATGAAAAACGTTATCCATGTAAAATGAAATGGATGTCAAAAGCTTCTCCTGGAGCAGCATGGTTACAATGAATTGCTAGGTCTGCGGCCTTTGTCACTCAGTGCAACCTGTAGAAATAGGTTAGTTTGTCCAACGGGTTTCTATTGCGCTCGAGAAATATGAAAGCCCATATCACCTATTCATATTACTGCAATTATAATTGGGACATCTGGTATGTTCTTAAGCATATTTGGAGTGCAGCTGGTTATGACAGGATCAGCTAATTACACAGTTGAAAGCTGGCAAATGCCGCAAGTTGAAAGGAGAAGCAGACACGCATGAAAGTCACAGTACACCAACAAATAGTTTTTGCAAAATGTCCAAAGAAAGAATTCATAGATCTTTTGAATACAAAGTCATGACTATTTTTTGCTCAAAGTATAGATGTTGTAATGTTTAATTGGTGTACCATGTCTTTTATTCATTGTGTAATTCTTTTGTGGGTTGAATAGATTCATTGTAGTGCTAAAAGTGAATTCAGAGCTCTTTTCTAGGTAGATGTTTTTCACTTTCTTGGTGCACTGAAATAGAGTTTTGCGATACTTGTCCAGAAATAATGAGTCATCATGAAGTATTTTTATAAACTGAGATGTAACCTATCACATTTTATCTTATTAAATTAGTAGTCTTGTGTAGGAGAGATGTAAGAGAAGTGTTTCCTAAACAGGTAAGGACTTCATAAATGTCAACAACCAAGCACTTGGAAAGGACTCGTTAAAATATAAGGAAGCACCTGGAAGGAGTTCCAACATTTAATCAATTTTTTCTTAGATGGTAAGATTAGGATGTGGCAAGATGAATGGAATGAAGAGAAATCCGTTAGGCAAAGCTTCTCATATCTCTACACAATTGTGATGAATCAGAATGCAACTATTGTATGCATATTGGAAGATGGGGACCTAAATTACGTCAGGAGCTGTCTAATGACTGCAAGGTAGACTGCCACTCAACTAATATGCATAATTGAGAAATAGAAGGAGCTGCACGATAGCTCCGATTCGTAGAAGCAGACCAAACAAAAATGCTATATTTTCTGCTTAATCATGTTACAACAGCTTAGATAGAATAGATAAAATGGAACAGTGTCGGCCATGGAAAATGGAATGGAGGTCAAAAGCCCTTTTCCACGCTAAAGCAATATGTTTTGAGTGAAAAGTTACGCATGAAGCTTGTCTTACCTAGAATGTGTAGAGAAGAGGATTTTATTTGTATTTACGTAATATAGGCATGAGAAGAGTTTAAATGGAATATCATGGACAGTGAGGATTCATAGTAGCTAATCCCAACTTGTTTGGGATTGAAGGGTAATTGTTGTAAGAGTTGTTTTCTGTGCTTGAGGACTACAGAAACCCCTGGTCACTTTGCACTGCGGTTATGCTTGGGAATTCAGGTTGTTCCTAAACATATTGGAGCATATTAGGTCTTGCCAGGATCAGTTAGGGCAGCAGCTGAAAGCTAGCAAGGGCAAAAAGTTGAAAGATGAAGACATGACAAAAAAAGCATGTATTTTTTGATGAACGGTCGGGAGGGAAAGAAATAATAAATGTTTGAAGAGAAATAACCGCCTTTTTTTAGATTAAATTTTTTACGAAGTCCGAACTTATAGTGTTACATGACTTTAATTATTTATGCAACTGTGGAGGATTTATAGATTCCCTACAGTGGAAAAAGGGAATTCGAAGTCCTTTAATGCAAAATATTGTGCTCCTTCTTTGTGCATTTAAATGAAATTTCACATCACATAACCCCAAGAAATAAAAGAAACTCCTTTTGTTACAAATAGAATATATTAGTAAATGCTTGAATATGGTGGACAGTATGGAAAGAGAAACTCCAGACTTTTTGAAGATAGGGGCAGTCATATGCAGGATATAGTTCCACTTTTAATTTGGTGTAAAGAATGGTTGTTAGAGGAGGAGATTTCTTTAGTAGATTTGATAGGGTAGCTGTAATTGTTTCTAGGGGTTTGTTCGGTTGTGGACTTGTGATGATGTGTTCTATGTAAATATGGCTTCCGCACTGTCCTAGTGCTTTCAATACCAAGGCAACCAATTTTGAAAAAAAGAAAAAAAAAAGGTTAGTAAATAATGTGAAAGACTATCTTAGTAAGCTAGTAGTCATGTGTATGAGAGATGAAAATAAACTGTTAATGTGAATAGATTTGGATAAACTATTGAATCCCTTTTTGTCATTAATTTTTTATTCTTTTTTAATAGAATCTTCAAACACATCAAAAGCAACAGGCAGCAAAACATTGCAAGTGCACAATA-GTTGATGTCGAGAATATGTTGGCAAAGTTTACTTGGGCAAAAGAAGCACAAATGAAACTTGAGAAG-ATGAAGGAAGAAGGGAAGCCATTGCCAAAGAGCATGGCTGAGGTACTGGTTATTGCATTTCAGATTGCTGTTCTGTGGCATTTTTTCACTTTTTTTCTTAGCTTCCTTCAAGAACCTTCTTTTTTAGAATGTTTAAAAAGATTGGTGCATTATCTATGCTTGAAAACTATTTAATCTTGGAATCATGTCAACTTTAATGGCATGATTTATCGGGACTCCACTTGATATAAGATATGACATTATTATAGGGAGAGAGAAAGATAAAAAGACACATGGAATTCTTACCGTCTCTAGTTTTATTGTTGGTAAAAAGAGCACATATGGTACTTCACTTATAACTTCATGACCAGTCAAACTTCTTTGCATAAAATGTGACAAAAGGAGTAATATTTTTGTTTTTTACCTTTTTATATTTTAGATCTTCTATATAGATTCTTTAATTTCTGGGTGAGATTTTTGTTTGCATTGTACAGATATGCAATATGCTATGTGTATAATATGAAAAGAAATTTTCAGCTGTAGTGCCTGTAATTTAGGTGCATGTGTATCATTGTGAAGTGTGTGTTTTTGTTCTCTCTGGTCCATGTCGGAGTTATGGGATGTCCTGTAAATTAAGCAGTAGTTAAGACACTCCTCTTCCGATACTTGGATTCTGCAGAGTCTCTATAGAACATGCGAAAAGAACACATAATATGTTCTGCTGTTGGTGCTTCCTTTTCCATGGTTATATGATGTTTGACATACTTAAATTAGGTTCTTCTGATATATAGGTTCAAAAGTTGATGGGTTCATCCCCGCTGGATGTTGCACGATCAAACATGGCTAAGAGTGGGCAAA-TTAGTAGGAATGCATTCTGTCCTTGTGGTTCCAA-GAAGAGATACAAAAG</genome_strand>
        <mrna_strand>CTTCTGATTCAAAAACAGATAGCAAATCAAAGAGACGAACACACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACTACTCAAACTCATCATCAATCTCTCACATTTCACACAGATGGATTTCTTCCACAACGCAACTCCATGGTTCATGGATCAACAATATTAAAGGTGTATTCACCGGCCAAAAATCCTCCCCCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTC...........................................................................................................................GATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTAGTAGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTCAAACAATTCAAAAGCAACAGGCAGCAAAACATTGCAAATGCACAATACGTTGATGTCGAGAATATGTTGGCAAAGTTTACTTGGGCAAAAGAAGCACAAATGAAACTTGAGAAGCATGAAGGAAGAAGGGAAGCCATTGCCAAAGAGCATGGCCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAAGTTGATGGGTTCATCCCCGCTGGATGTTGCACGATCAAACATGGCTAAGAGTGGGCAAACTTAGTAGGAATGCATTCTGTCCTTGTGGTTCCAAGGAAGAGATACCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E617904" ref_strand="+" ref_description="SGN-E617904 [68576]">
      <seq>tcaaatcaaagagacgaacacacagtaattcatatatgattcgtcctcgaaccctactgttttactactcaaactcatcatcaatctctcacatttcacacagatggattcttccacaacgcaactccatggtccatggatcaccaatataaagggtgtattcacccggccaaaaatcctcccccgatgccgccaaagtacccatttccgagtcattcactctccttcgatttgcggatgaattgggcagagcaaagaagttggggactctgaagcagtatgtagtagggagaggtagtgaagttacatttgctgaagcttttgagaagcagcaagctattcttcaatatcttggtgcattggatcccactggagagaatcttcaaacaattcaaaagcaacaggcagcaaaacattgcaaatgcacaatagttgatgtcgagaatatgttggcaaagtttacttgggcaaaagaagcacaaatgaaacttgagaagatgaaggaagaagggaagccattgccaaagagcatgngcgaggttcaaaagttgatgggttcatccccgctggatgttgcacgatcaaacatggctaagagtgggcaaattagtacgaatgcattctgtccttgtggttccaagacagagatacaaaaggtgttgcggggaaggattcaaccattttaaatcgacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="14677" stop="9801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14378" g_stop="14160" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.849"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14159" i_stop="14037" i_length="123">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14036" g_stop="13888" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="377" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13887" i_stop="11114" i_length="2774">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11113" g_stop="10952" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="539" r_length="162" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10951" i_stop="10224" i_length="728">
            <donor d_prob="0.884" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10223" g_stop="10108" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="656" r_length="117" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E617904" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14378" e_stop="14160"/>
          <exon e_start="14036" e_stop="13888"/>
          <exon e_start="11113" e_stop="10952"/>
          <exon e_start="10223" e_stop="10108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCAAAGAGACGAACTCACAGTAATTCATATATGATTCGTCCTCGAACCCTACTG-TTT--TACTC--A-TC---ATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGCTTCATGGATCAACAAGATTAAAGGTGTATTCA-CCGGCCAAAAAACCTCCACCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTCGTAAGTTTTATGCACCACTTTAACTATTAGTAAATGTAGATTAGAGGTGGAGCCAAGATTTAAAGTTTATGAGTTTATTCTAGTTTTCTTAAGTTATTGTGTTATAACTCTGTTTGAATTTAGGATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTGGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAGGTTTATACCCATTTACTTTAGCTCTCTCTATTTTAATGTGGTTAATCCTGTAGTATTCTGATTAAATGCCAAGTGTATTAACAAATACTTTATGTAGTTATTGTACTGTTCCCTCTGGTTTCTTTTTGTCTCTTTGGATTCTAGCTAAGTGGAATGCTTATATCCGTTATAGATTCATAAAGCAGTTGGATTCGTTATAAACATACCTACGAAGCGATTGACTAGGAGTGTTGAGTTGAATGATGGAGTTTAGGGGTAACCGTTGATGTTTTTCTTGGTCTGTTTTAAAGCTTTAGTTCCTCTACGCACATAATAAAGTATTGTTAAGTGCAGTTGGGAGGAGGAAAATGATCAGGAAGTAGATAAAGCTGCTCATCCTTTATGCAGAATTGAAAAATTGAAGGTGCTAGGCGATAGACCTAATTCTTTGAAGTGGGGACCAGAAGAAATGGATAATAGTTTCTATTAATTTACATGACAAACTTAAATGATATTACAACAGTTATGCAAACAGAGTAAATGAAAAACGTTATCCATGTAAAATGAAATGGATGTCAAAAGCTTCTCCTGGAGCAGCATGGTTACAATGAATTGCTAGGTCTGCGGCCTTTGTCACTCAGTGCAACCTGTAGAAATAGGTTAGTTTGTCCAACGGGTTTCTATTGCGCTCGAGAAATATGAAAGCCCATATCACCTATTCATATTACTGCAATTATAATTGGGACATCTGGTATGTTCTTAAGCATATTTGGAGTGCAGCTGGTTATGACAGGATCAGCTAATTACACAGTTGAAAGCTGGCAAATGCCGCAAGTTGAAAGGAGAAGCAGACACGCATGAAAGTCACAGTACACCAACAAATAGTTTTTGCAAAATGTCCAAAGAAAGAATTCATAGATCTTTTGAATACAAAGTCATGACTATTTTTTGCTCAAAGTATAGATGTTGTAATGTTTAATTGGTGTACCATGTCTTTTATTCATTGTGTAATTCTTTTGTGGGTTGAATAGATTCATTGTAGTGCTAAAAGTGAATTCAGAGCTCTTTTCTAGGTAGATGTTTTTCACTTTCTTGGTGCACTGAAATAGAGTTTTGCGATACTTGTCCAGAAATAATGAGTCATCATGAAGTATTTTTATAAACTGAGATGTAACCTATCACATTTTATCTTATTAAATTAGTAGTCTTGTGTAGGAGAGATGTAAGAGAAGTGTTTCCTAAACAGGTAAGGACTTCATAAATGTCAACAACCAAGCACTTGGAAAGGACTCGTTAAAATATAAGGAAGCACCTGGAAGGAGTTCCAACATTTAATCAATTTTTTCTTAGATGGTAAGATTAGGATGTGGCAAGATGAATGGAATGAAGAGAAATCCGTTAGGCAAAGCTTCTCATATCTCTACACAATTGTGATGAATCAGAATGCAACTATTGTATGCATATTGGAAGATGGGGACCTAAATTACGTCAGGAGCTGTCTAATGACTGCAAGGTAGACTGCCACTCAACTAATATGCATAATTGAGAAATAGAAGGAGCTGCACGATAGCTCCGATTCGTAGAAGCAGACCAAACAAAAATGCTATATTTTCTGCTTAATCATGTTACAACAGCTTAGATAGAATAGATAAAATGGAACAGTGTCGGCCATGGAAAATGGAATGGAGGTCAAAAGCCCTTTTCCACGCTAAAGCAATATGTTTTGAGTGAAAAGTTACGCATGAAGCTTGTCTTACCTAGAATGTGTAGAGAAGAGGATTTTATTTGTATTTACGTAATATAGGCATGAGAAGAGTTTAAATGGAATATCATGGACAGTGAGGATTCATAGTAGCTAATCCCAACTTGTTTGGGATTGAAGGGTAATTGTTGTAAGAGTTGTTTTCTGTGCTTGAGGACTACAGAAACCCCTGGTCACTTTGCACTGCGGTTATGCTTGGGAATTCAGGTTGTTCCTAAACATATTGGAGCATATTAGGTCTTGCCAGGATCAGTTAGGGCAGCAGCTGAAAGCTAGCAAGGGCAAAAAGTTGAAAGATGAAGACATGACAAAAAAAGCATGTATTTTTTGATGAACGGTCGGGAGGGAAAGAAATAATAAATGTTTGAAGAGAAATAACCGCCTTTTTTTAGATTAAATTTTTTACGAAGTCCGAACTTATAGTGTTACATGACTTTAATTATTTATGCAACTGTGGAGGATTTATAGATTCCCTACAGTGGAAAAAGGGAATTCGAAGTCCTTTAATGCAAAATATTGTGCTCCTTCTTTGTGCATTTAAATGAAATTTCACATCACATAACCCCAAGAAATAAAAGAAACTCCTTTTGTTACAAATAGAATATATTAGTAAATGCTTGAATATGGTGGACAGTATGGAAAGAGAAACTCCAGACTTTTTGAAGATAGGGGCAGTCATATGCAGGATATAGTTCCACTTTTAATTTGGTGTAAAGAATGGTTGTTAGAGGAGGAGATTTCTTTAGTAGATTTGATAGGGTAGCTGTAATTGTTTCTAGGGGTTTGTTCGGTTGTGGACTTGTGATGATGTGTTCTATGTAAATATGGCTTCCGCACTGTCCTAGTGCTTTCAATACCAAGGCAACCAATTTTGAAAAAAAGAAAAAAAAAAGGTTAGTAAATAATGTGAAAGACTATCTTAGTAAGCTAGTAGTCATGTGTATGAGAGATGAAAATAAACTGTTAATGTGAATAGATTTGGATAAACTATTGAATCCCTTTTTGTCATTAATTTTTTATTCTTTTTTAATAGAATCTTCAAACACATCAAAAGCAACAGGCAGCAAAACATTGCAAGTGCACAATAGTTGATGTCGAGAATATGTTGGCAAAGTTTACTTGGGCAAAAGAAGCACAAATGAAACTTGAGAAGATGAAGGAAGAAGGGAAGCCATTGCCAAAGAGCATGGCTGAGGTACTGGTTATTGCATTTCAGATTGCTGTTCTGTGGCATTTTTTCACTTTTTTTCTTAGCTTCCTTCAAGAACCTTCTTTTTTAGAATGTTTAAAAAGATTGGTGCATTATCTATGCTTGAAAACTATTTAATCTTGGAATCATGTCAACTTTAATGGCATGATTTATCGGGACTCCACTTGATATAAGATATGACATTATTATAGGGAGAGAGAAAGATAAAAAGACACATGGAATTCTTACCGTCTCTAGTTTTATTGTTGGTAAAAAGAGCACATATGGTACTTCACTTATAACTTCATGACCAGTCAAACTTCTTTGCATAAAATGTGACAAAAGGAGTAATATTTTTGTTTTTTACCTTTTTATATTTTAGATCTTCTATATAGATTCTTTAATTTCTGGGTGAGATTTTTGTTTGCATTGTACAGATATGCAATATGCTATGTGTATAATATGAAAAGAAATTTTCAGCTGTAGTGCCTGTAATTTAGGTGCATGTGTATCATTGTGAAGTGTGTGTTTTTGTTCTCTCTGGTCCATGTCGGAGTTATGGGATGTCCTGTAAATTAAGCAGTAGTTAAGACACTCCTCTTCCGATACTTGGATTCTGCAGAGTCTCTATAGAACATGCGAAAAGAACACATAATATGTTCTGCTGTTGGTGCTTCCTTTTCCATGGTTATATGATGTTTGACATACTTAAATTAGGTTCTTCTGATATATAGGTTCAAAAGTTGATGGGTTCATCCCCGCTGGATGTTGCACGATCAAACATGGCTAAGAGTGGGCAAATTAGTAGGAATGCATTCTGTCCTTGTGGTTCCAAGA-AGAGATACAAAAG</genome_strand>
        <mrna_strand>TCAAATCAAAGAGACGAACACACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACTACTCAAACTCATCATCAATCTCTCACATTTCACACAGAT-GGATTCTTCCACAACGCAACTCCATGGTCCATGGATCACCAATATAAAGGGTGTATTCACCCGGCCAAAAATCCTCCCCCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTC...........................................................................................................................GATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTAGTAGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTCAAACAATTCAAAAGCAACAGGCAGCAAAACATTGCAAATGCACAATAGTTGATGTCGAGAATATGTTGGCAAAGTTTACTTGGGCAAAAGAAGCACAAATGAAACTTGAGAAGATGAAGGAAGAAGGGAAGCCATTGCCAAAGAGCATGNGCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAAGTTGATGGGTTCATCCCCGCTGGATGTTGCACGATCAAACATGGCTAAGAGTGGGCAAATTAGTACGAATGCATTCTGTCCTTGTGGTTCCAAGACAGAGATACAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358354" ref_strand="+" ref_description="SGN-E358354 [cLHT-28-L3]">
      <seq>aacccctctcagtcgtcaagtctcttgtccttccgattcagaaacagaagcaaatcaaagagacgaactcacagtaattcatatatgattcgtcctcgaaccctactgttttactcatcatcaatctctcacatttcacacagatgggtttcttccacaacacaactccatggttcatggatcaacaagattaaaggtgtattcaccggccaacaaacctccacagatgccgccaaagcacccatttccgagtcattcactctccttcgatttgcggatgaattgggcagagcaaagaagttggggactctgaagcagtatgttgtagggagaggtagtgaagttacatttgctgaagcttttgagaagcagcaagctattcttcaatatcttggtgcattggatcccactggagagaatcttcaaacacatcaaaagcaacaggcagcaaaacattgcaagtgcacaatagttgatgtcgagaatatgttggcaaagtttacttgggcaaaagaagcacaaatgaaacttgagaagatgaaggaagaagggaagccattgccaaagagcatggctgaggttcaaaagttgatgggttcatccccgctggatgttgcacgatcaaacatggctaagagtgggcaaattagtaggaatgcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="14727" stop="9839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14427" g_stop="14160" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14159" i_stop="14037" i_length="123">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14036" g_stop="13888" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="417" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13887" i_stop="11114" i_length="2774">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11113" g_stop="10952" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="579" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10951" i_stop="10224" i_length="728">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10223" g_stop="10139" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="664" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E358354" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14427" e_stop="14160"/>
          <exon e_start="14036" e_stop="13888"/>
          <exon e_start="11113" e_stop="10952"/>
          <exon e_start="10223" e_stop="10139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCTCTCAGTCGTCAAGTCTCTTGTCCTTCCGATTCAAAAACAGAAGCAAATCAAAGAGACGAACTCACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACTCATCATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGCTTCATGGATCAACAAGATTAAAGGTGTATTCACCGGCCAAAAAACCTCCACCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTCGTAAGTTTTATGCACCACTTTAACTATTAGTAAATGTAGATTAGAGGTGGAGCCAAGATTTAAAGTTTATGAGTTTATTCTAGTTTTCTTAAGTTATTGTGTTATAACTCTGTTTGAATTTAGGATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTGGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAGGTTTATACCCATTTACTTTAGCTCTCTCTATTTTAATGTGGTTAATCCTGTAGTATTCTGATTAAATGCCAAGTGTATTAACAAATACTTTATGTAGTTATTGTACTGTTCCCTCTGGTTTCTTTTTGTCTCTTTGGATTCTAGCTAAGTGGAATGCTTATATCCGTTATAGATTCATAAAGCAGTTGGATTCGTTATAAACATACCTACGAAGCGATTGACTAGGAGTGTTGAGTTGAATGATGGAGTTTAGGGGTAACCGTTGATGTTTTTCTTGGTCTGTTTTAAAGCTTTAGTTCCTCTACGCACATAATAAAGTATTGTTAAGTGCAGTTGGGAGGAGGAAAATGATCAGGAAGTAGATAAAGCTGCTCATCCTTTATGCAGAATTGAAAAATTGAAGGTGCTAGGCGATAGACCTAATTCTTTGAAGTGGGGACCAGAAGAAATGGATAATAGTTTCTATTAATTTACATGACAAACTTAAATGATATTACAACAGTTATGCAAACAGAGTAAATGAAAAACGTTATCCATGTAAAATGAAATGGATGTCAAAAGCTTCTCCTGGAGCAGCATGGTTACAATGAATTGCTAGGTCTGCGGCCTTTGTCACTCAGTGCAACCTGTAGAAATAGGTTAGTTTGTCCAACGGGTTTCTATTGCGCTCGAGAAATATGAAAGCCCATATCACCTATTCATATTACTGCAATTATAATTGGGACATCTGGTATGTTCTTAAGCATATTTGGAGTGCAGCTGGTTATGACAGGATCAGCTAATTACACAGTTGAAAGCTGGCAAATGCCGCAAGTTGAAAGGAGAAGCAGACACGCATGAAAGTCACAGTACACCAACAAATAGTTTTTGCAAAATGTCCAAAGAAAGAATTCATAGATCTTTTGAATACAAAGTCATGACTATTTTTTGCTCAAAGTATAGATGTTGTAATGTTTAATTGGTGTACCATGTCTTTTATTCATTGTGTAATTCTTTTGTGGGTTGAATAGATTCATTGTAGTGCTAAAAGTGAATTCAGAGCTCTTTTCTAGGTAGATGTTTTTCACTTTCTTGGTGCACTGAAATAGAGTTTTGCGATACTTGTCCAGAAATAATGAGTCATCATGAAGTATTTTTATAAACTGAGATGTAACCTATCACATTTTATCTTATTAAATTAGTAGTCTTGTGTAGGAGAGATGTAAGAGAAGTGTTTCCTAAACAGGTAAGGACTTCATAAATGTCAACAACCAAGCACTTGGAAAGGACTCGTTAAAATATAAGGAAGCACCTGGAAGGAGTTCCAACATTTAATCAATTTTTTCTTAGATGGTAAGATTAGGATGTGGCAAGATGAATGGAATGAAGAGAAATCCGTTAGGCAAAGCTTCTCATATCTCTACACAATTGTGATGAATCAGAATGCAACTATTGTATGCATATTGGAAGATGGGGACCTAAATTACGTCAGGAGCTGTCTAATGACTGCAAGGTAGACTGCCACTCAACTAATATGCATAATTGAGAAATAGAAGGAGCTGCACGATAGCTCCGATTCGTAGAAGCAGACCAAACAAAAATGCTATATTTTCTGCTTAATCATGTTACAACAGCTTAGATAGAATAGATAAAATGGAACAGTGTCGGCCATGGAAAATGGAATGGAGGTCAAAAGCCCTTTTCCACGCTAAAGCAATATGTTTTGAGTGAAAAGTTACGCATGAAGCTTGTCTTACCTAGAATGTGTAGAGAAGAGGATTTTATTTGTATTTACGTAATATAGGCATGAGAAGAGTTTAAATGGAATATCATGGACAGTGAGGATTCATAGTAGCTAATCCCAACTTGTTTGGGATTGAAGGGTAATTGTTGTAAGAGTTGTTTTCTGTGCTTGAGGACTACAGAAACCCCTGGTCACTTTGCACTGCGGTTATGCTTGGGAATTCAGGTTGTTCCTAAACATATTGGAGCATATTAGGTCTTGCCAGGATCAGTTAGGGCAGCAGCTGAAAGCTAGCAAGGGCAAAAAGTTGAAAGATGAAGACATGACAAAAAAAGCATGTATTTTTTGATGAACGGTCGGGAGGGAAAGAAATAATAAATGTTTGAAGAGAAATAACCGCCTTTTTTTAGATTAAATTTTTTACGAAGTCCGAACTTATAGTGTTACATGACTTTAATTATTTATGCAACTGTGGAGGATTTATAGATTCCCTACAGTGGAAAAAGGGAATTCGAAGTCCTTTAATGCAAAATATTGTGCTCCTTCTTTGTGCATTTAAATGAAATTTCACATCACATAACCCCAAGAAATAAAAGAAACTCCTTTTGTTACAAATAGAATATATTAGTAAATGCTTGAATATGGTGGACAGTATGGAAAGAGAAACTCCAGACTTTTTGAAGATAGGGGCAGTCATATGCAGGATATAGTTCCACTTTTAATTTGGTGTAAAGAATGGTTGTTAGAGGAGGAGATTTCTTTAGTAGATTTGATAGGGTAGCTGTAATTGTTTCTAGGGGTTTGTTCGGTTGTGGACTTGTGATGATGTGTTCTATGTAAATATGGCTTCCGCACTGTCCTAGTGCTTTCAATACCAAGGCAACCAATTTTGAAAAAAAGAAAAAAAAAAGGTTAGTAAATAATGTGAAAGACTATCTTAGTAAGCTAGTAGTCATGTGTATGAGAGATGAAAATAAACTGTTAATGTGAATAGATTTGGATAAACTATTGAATCCCTTTTTGTCATTAATTTTTTATTCTTTTTTAATAGAATCTTCAAACACATCAAAAGCAACAGGCAGCAAAACATTGCAAGTGCACAATAGTTGATGTCGAGAATATGTTGGCAAAGTTTACTTGGGCAAAAGAAGCACAAATGAAACTTGAGAAGATGAAGGAAGAAGGGAAGCCATTGCCAAAGAGCATGGCTGAGGTACTGGTTATTGCATTTCAGATTGCTGTTCTGTGGCATTTTTTCACTTTTTTTCTTAGCTTCCTTCAAGAACCTTCTTTTTTAGAATGTTTAAAAAGATTGGTGCATTATCTATGCTTGAAAACTATTTAATCTTGGAATCATGTCAACTTTAATGGCATGATTTATCGGGACTCCACTTGATATAAGATATGACATTATTATAGGGAGAGAGAAAGATAAAAAGACACATGGAATTCTTACCGTCTCTAGTTTTATTGTTGGTAAAAAGAGCACATATGGTACTTCACTTATAACTTCATGACCAGTCAAACTTCTTTGCATAAAATGTGACAAAAGGAGTAATATTTTTGTTTTTTACCTTTTTATATTTTAGATCTTCTATATAGATTCTTTAATTTCTGGGTGAGATTTTTGTTTGCATTGTACAGATATGCAATATGCTATGTGTATAATATGAAAAGAAATTTTCAGCTGTAGTGCCTGTAATTTAGGTGCATGTGTATCATTGTGAAGTGTGTGTTTTTGTTCTCTCTGGTCCATGTCGGAGTTATGGGATGTCCTGTAAATTAAGCAGTAGTTAAGACACTCCTCTTCCGATACTTGGATTCTGCAGAGTCTCTATAGAACATGCGAAAAGAACACATAATATGTTCTGCTGTTGGTGCTTCCTTTTCCATGGTTATATGATGTTTGACATACTTAAATTAGGTTCTTCTGATATATAGGTTCAAAAGTTGATGGGTTCATCCCCGCTGGATGTTGCACGATCAAACATGGCTAAGAGTGGGCAAATTAGTAGGAATGCATTCT</genome_strand>
        <mrna_strand>AACCCCTCTCAGTCGTCAAGTCTCTTGTCCTTCCGATTCAGAAACAGAAGCAAATCAAAGAGACGAACTCACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACTCATCATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGGTTCATGGATCAACAAGATTAAAGGTGTATTCACCGGCCAACAAACCTCCACAGATGCCGCCAAAGCACCCATTTCCGAGTCATTCACTCTCCTTC...........................................................................................................................GATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTAGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTCAAACACATCAAAAGCAACAGGCAGCAAAACATTGCAAGTGCACAATAGTTGATGTCGAGAATATGTTGGCAAAGTTTACTTGGGCAAAAGAAGCACAAATGAAACTTGAGAAGATGAAGGAAGAAGGGAAGCCATTGCCAAAGAGCATGGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAAGTTGATGGGTTCATCCCCGCTGGATGTTGCACGATCAAACATGGCTAAGAGTGGGCAAATTAGTAGGAATGCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449477" ref_strand="+" ref_description="SGN-E449477 [cSTS-6-J17]">
      <seq>attcatatatgattcgtcctcgaaccctactgttttactactcaaactcatcatcaatctctcacatttcacacagatggatttcttccacaacgcaactccatggttcatggatcaacaatattaaaggtgtattcaccggccaaaaatcctcccccgatgccgccaaagtacccatttccgagtcattcactctccttcgatttgcggatgaattgggcagagcaaagaagttggggactctgaagcagtatgtagtagggagaggtagtgaagttacatttgctgaagcttttgagaagcagcaagctattcttcaatatcttggtgcattggatcccactggagagaatcttcaaacaattcaaaagcaacaggcagcaaaacattgcaagtgcacaatagttgatgtcgagaatatgttggcaaagtttacttgggcaaaagaagcacaaatgaaacttgagaagatgaaggaagaagggaagccattgccaaagagcatggccgangttcaaaagttgatgggttcatccccgctggatgttgcacgatcaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="14651" stop="9873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14313" g_stop="14160" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="201" r_length="154" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14159" i_stop="14037" i_length="123">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14036" g_stop="13888" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="350" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13887" i_stop="11114" i_length="2774">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11113" g_stop="10952" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="512" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10951" i_stop="10224" i_length="728">
            <donor d_prob="0.884" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10223" g_stop="10173" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="563" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E449477" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14313" e_stop="14160"/>
          <exon e_start="14036" e_stop="13888"/>
          <exon e_start="11113" e_stop="10952"/>
          <exon e_start="10223" e_stop="10173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGCTTCATGGATCAACAAGATTAAAGGTGTATTCACCGGCCAAAAAACCTCCACCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTCGTAAGTTTTATGCACCACTTTAACTATTAGTAAATGTAGATTAGAGGTGGAGCCAAGATTTAAAGTTTATGAGTTTATTCTAGTTTTCTTAAGTTATTGTGTTATAACTCTGTTTGAATTTAGGATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTGGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAGGTTTATACCCATTTACTTTAGCTCTCTCTATTTTAATGTGGTTAATCCTGTAGTATTCTGATTAAATGCCAAGTGTATTAACAAATACTTTATGTAGTTATTGTACTGTTCCCTCTGGTTTCTTTTTGTCTCTTTGGATTCTAGCTAAGTGGAATGCTTATATCCGTTATAGATTCATAAAGCAGTTGGATTCGTTATAAACATACCTACGAAGCGATTGACTAGGAGTGTTGAGTTGAATGATGGAGTTTAGGGGTAACCGTTGATGTTTTTCTTGGTCTGTTTTAAAGCTTTAGTTCCTCTACGCACATAATAAAGTATTGTTAAGTGCAGTTGGGAGGAGGAAAATGATCAGGAAGTAGATAAAGCTGCTCATCCTTTATGCAGAATTGAAAAATTGAAGGTGCTAGGCGATAGACCTAATTCTTTGAAGTGGGGACCAGAAGAAATGGATAATAGTTTCTATTAATTTACATGACAAACTTAAATGATATTACAACAGTTATGCAAACAGAGTAAATGAAAAACGTTATCCATGTAAAATGAAATGGATGTCAAAAGCTTCTCCTGGAGCAGCATGGTTACAATGAATTGCTAGGTCTGCGGCCTTTGTCACTCAGTGCAACCTGTAGAAATAGGTTAGTTTGTCCAACGGGTTTCTATTGCGCTCGAGAAATATGAAAGCCCATATCACCTATTCATATTACTGCAATTATAATTGGGACATCTGGTATGTTCTTAAGCATATTTGGAGTGCAGCTGGTTATGACAGGATCAGCTAATTACACAGTTGAAAGCTGGCAAATGCCGCAAGTTGAAAGGAGAAGCAGACACGCATGAAAGTCACAGTACACCAACAAATAGTTTTTGCAAAATGTCCAAAGAAAGAATTCATAGATCTTTTGAATACAAAGTCATGACTATTTTTTGCTCAAAGTATAGATGTTGTAATGTTTAATTGGTGTACCATGTCTTTTATTCATTGTGTAATTCTTTTGTGGGTTGAATAGATTCATTGTAGTGCTAAAAGTGAATTCAGAGCTCTTTTCTAGGTAGATGTTTTTCACTTTCTTGGTGCACTGAAATAGAGTTTTGCGATACTTGTCCAGAAATAATGAGTCATCATGAAGTATTTTTATAAACTGAGATGTAACCTATCACATTTTATCTTATTAAATTAGTAGTCTTGTGTAGGAGAGATGTAAGAGAAGTGTTTCCTAAACAGGTAAGGACTTCATAAATGTCAACAACCAAGCACTTGGAAAGGACTCGTTAAAATATAAGGAAGCACCTGGAAGGAGTTCCAACATTTAATCAATTTTTTCTTAGATGGTAAGATTAGGATGTGGCAAGATGAATGGAATGAAGAGAAATCCGTTAGGCAAAGCTTCTCATATCTCTACACAATTGTGATGAATCAGAATGCAACTATTGTATGCATATTGGAAGATGGGGACCTAAATTACGTCAGGAGCTGTCTAATGACTGCAAGGTAGACTGCCACTCAACTAATATGCATAATTGAGAAATAGAAGGAGCTGCACGATAGCTCCGATTCGTAGAAGCAGACCAAACAAAAATGCTATATTTTCTGCTTAATCATGTTACAACAGCTTAGATAGAATAGATAAAATGGAACAGTGTCGGCCATGGAAAATGGAATGGAGGTCAAAAGCCCTTTTCCACGCTAAAGCAATATGTTTTGAGTGAAAAGTTACGCATGAAGCTTGTCTTACCTAGAATGTGTAGAGAAGAGGATTTTATTTGTATTTACGTAATATAGGCATGAGAAGAGTTTAAATGGAATATCATGGACAGTGAGGATTCATAGTAGCTAATCCCAACTTGTTTGGGATTGAAGGGTAATTGTTGTAAGAGTTGTTTTCTGTGCTTGAGGACTACAGAAACCCCTGGTCACTTTGCACTGCGGTTATGCTTGGGAATTCAGGTTGTTCCTAAACATATTGGAGCATATTAGGTCTTGCCAGGATCAGTTAGGGCAGCAGCTGAAAGCTAGCAAGGGCAAAAAGTTGAAAGATGAAGACATGACAAAAAAAGCATGTATTTTTTGATGAACGGTCGGGAGGGAAAGAAATAATAAATGTTTGAAGAGAAATAACCGCCTTTTTTTAGATTAAATTTTTTACGAAGTCCGAACTTATAGTGTTACATGACTTTAATTATTTATGCAACTGTGGAGGATTTATAGATTCCCTACAGTGGAAAAAGGGAATTCGAAGTCCTTTAATGCAAAATATTGTGCTCCTTCTTTGTGCATTTAAATGAAATTTCACATCACATAACCCCAAGAAATAAAAGAAACTCCTTTTGTTACAAATAGAATATATTAGTAAATGCTTGAATATGGTGGACAGTATGGAAAGAGAAACTCCAGACTTTTTGAAGATAGGGGCAGTCATATGCAGGATATAGTTCCACTTTTAATTTGGTGTAAAGAATGGTTGTTAGAGGAGGAGATTTCTTTAGTAGATTTGATAGGGTAGCTGTAATTGTTTCTAGGGGTTTGTTCGGTTGTGGACTTGTGATGATGTGTTCTATGTAAATATGGCTTCCGCACTGTCCTAGTGCTTTCAATACCAAGGCAACCAATTTTGAAAAAAAGAAAAAAAAAAGGTTAGTAAATAATGTGAAAGACTATCTTAGTAAGCTAGTAGTCATGTGTATGAGAGATGAAAATAAACTGTTAATGTGAATAGATTTGGATAAACTATTGAATCCCTTTTTGTCATTAATTTTTTATTCTTTTTTAATAGAATCTTCAAACACATCAAAAGCAACAGGCAGCAAAACATTGCAAGTGCACAATAGTTGATGTCGAGAATATGTTGGCAAAGTTTACTTGGGCAAAAGAAGCACAAATGAAACTTGAGAAGATGAAGGAAGAAGGGAAGCCATTGCCAAAGAGCATGGCTGAGGTACTGGTTATTGCATTTCAGATTGCTGTTCTGTGGCATTTTTTCACTTTTTTTCTTAGCTTCCTTCAAGAACCTTCTTTTTTAGAATGTTTAAAAAGATTGGTGCATTATCTATGCTTGAAAACTATTTAATCTTGGAATCATGTCAACTTTAATGGCATGATTTATCGGGACTCCACTTGATATAAGATATGACATTATTATAGGGAGAGAGAAAGATAAAAAGACACATGGAATTCTTACCGTCTCTAGTTTTATTGTTGGTAAAAAGAGCACATATGGTACTTCACTTATAACTTCATGACCAGTCAAACTTCTTTGCATAAAATGTGACAAAAGGAGTAATATTTTTGTTTTTTACCTTTTTATATTTTAGATCTTCTATATAGATTCTTTAATTTCTGGGTGAGATTTTTGTTTGCATTGTACAGATATGCAATATGCTATGTGTATAATATGAAAAGAAATTTTCAGCTGTAGTGCCTGTAATTTAGGTGCATGTGTATCATTGTGAAGTGTGTGTTTTTGTTCTCTCTGGTCCATGTCGGAGTTATGGGATGTCCTGTAAATTAAGCAGTAGTTAAGACACTCCTCTTCCGATACTTGGATTCTGCAGAGTCTCTATAGAACATGCGAAAAGAACACATAATATGTTCTGCTGTTGGTGCTTCCTTTTCCATGGTTATATGATGTTTGACATACTTAAATTAGGTTCTTCTGATATATAGGTTCAAAAGTTGATGGGTTCATCCCCGCTGGATGTTGCACGATCAAACATG</genome_strand>
        <mrna_strand>TCATCATCAATCTCTCACATTTCACACAGATGGATTTCTTCCACAACGCAACTCCATGGTTCATGGATCAACAATATTAAAGGTGTATTCACCGGCCAAAAATCCTCCCCCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTC...........................................................................................................................GATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTAGTAGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTCAAACAATTCAAAAGCAACAGGCAGCAAAACATTGCAAGTGCACAATAGTTGATGTCGAGAATATGTTGGCAAAGTTTACTTGGGCAAAAGAAGCACAAATGAAACTTGAGAAGATGAAGGAAGAAGGGAAGCCATTGCCAAAGAGCATGGCCGAN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAAGTTGATGGGTTCATCCCCGCTGGATGTTGCACGATCAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358293" ref_strand="+" ref_description="SGN-E358293 [cLHT-28-H4]">
      <seq>aacccctctcagtcgtcaagtctcttgtccttccgattcaaaaacagaagcaaatcaaagagacgaactcacagtaattcatatatgattcgtcctcgaaccctactgttttactcatcatcaatctctcacatttcacacagatgggtttcttccacaacacaactccatggttcatggatcaacaagattaaaggtgtattcaccggccaacaaacctccacagatgccgccaaagcacccatttccgagtcattcactctccttcgatttgcggatgaattgggcagagcaaagaagttggggactctgaagcagtatgttgtagggagaggtagtgaagttacatttgctgaagcttttgagaagcagcaagctattcttcaatatcttggtgcattggatcccactggagagaatcttcaaacacatcaaaagcaacaggcagcaaaacattgcaagtgcacaatagttgatgtcgagaatatgttggcaaagtttacttgggcaaaagaagcacaaatgaaacttgagaagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="14727" stop="10690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14427" g_stop="14160" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14159" i_stop="14037" i_length="123">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14036" g_stop="13888" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="417" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13887" i_stop="11114" i_length="2774">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11113" g_stop="10990" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="541" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E358293" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14427" e_stop="14160"/>
          <exon e_start="14036" e_stop="13888"/>
          <exon e_start="11113" e_stop="10990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCTCTCAGTCGTCAAGTCTCTTGTCCTTCCGATTCAAAAACAGAAGCAAATCAAAGAGACGAACTCACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACTCATCATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGCTTCATGGATCAACAAGATTAAAGGTGTATTCACCGGCCAAAAAACCTCCACCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTCGTAAGTTTTATGCACCACTTTAACTATTAGTAAATGTAGATTAGAGGTGGAGCCAAGATTTAAAGTTTATGAGTTTATTCTAGTTTTCTTAAGTTATTGTGTTATAACTCTGTTTGAATTTAGGATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTGGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAGGTTTATACCCATTTACTTTAGCTCTCTCTATTTTAATGTGGTTAATCCTGTAGTATTCTGATTAAATGCCAAGTGTATTAACAAATACTTTATGTAGTTATTGTACTGTTCCCTCTGGTTTCTTTTTGTCTCTTTGGATTCTAGCTAAGTGGAATGCTTATATCCGTTATAGATTCATAAAGCAGTTGGATTCGTTATAAACATACCTACGAAGCGATTGACTAGGAGTGTTGAGTTGAATGATGGAGTTTAGGGGTAACCGTTGATGTTTTTCTTGGTCTGTTTTAAAGCTTTAGTTCCTCTACGCACATAATAAAGTATTGTTAAGTGCAGTTGGGAGGAGGAAAATGATCAGGAAGTAGATAAAGCTGCTCATCCTTTATGCAGAATTGAAAAATTGAAGGTGCTAGGCGATAGACCTAATTCTTTGAAGTGGGGACCAGAAGAAATGGATAATAGTTTCTATTAATTTACATGACAAACTTAAATGATATTACAACAGTTATGCAAACAGAGTAAATGAAAAACGTTATCCATGTAAAATGAAATGGATGTCAAAAGCTTCTCCTGGAGCAGCATGGTTACAATGAATTGCTAGGTCTGCGGCCTTTGTCACTCAGTGCAACCTGTAGAAATAGGTTAGTTTGTCCAACGGGTTTCTATTGCGCTCGAGAAATATGAAAGCCCATATCACCTATTCATATTACTGCAATTATAATTGGGACATCTGGTATGTTCTTAAGCATATTTGGAGTGCAGCTGGTTATGACAGGATCAGCTAATTACACAGTTGAAAGCTGGCAAATGCCGCAAGTTGAAAGGAGAAGCAGACACGCATGAAAGTCACAGTACACCAACAAATAGTTTTTGCAAAATGTCCAAAGAAAGAATTCATAGATCTTTTGAATACAAAGTCATGACTATTTTTTGCTCAAAGTATAGATGTTGTAATGTTTAATTGGTGTACCATGTCTTTTATTCATTGTGTAATTCTTTTGTGGGTTGAATAGATTCATTGTAGTGCTAAAAGTGAATTCAGAGCTCTTTTCTAGGTAGATGTTTTTCACTTTCTTGGTGCACTGAAATAGAGTTTTGCGATACTTGTCCAGAAATAATGAGTCATCATGAAGTATTTTTATAAACTGAGATGTAACCTATCACATTTTATCTTATTAAATTAGTAGTCTTGTGTAGGAGAGATGTAAGAGAAGTGTTTCCTAAACAGGTAAGGACTTCATAAATGTCAACAACCAAGCACTTGGAAAGGACTCGTTAAAATATAAGGAAGCACCTGGAAGGAGTTCCAACATTTAATCAATTTTTTCTTAGATGGTAAGATTAGGATGTGGCAAGATGAATGGAATGAAGAGAAATCCGTTAGGCAAAGCTTCTCATATCTCTACACAATTGTGATGAATCAGAATGCAACTATTGTATGCATATTGGAAGATGGGGACCTAAATTACGTCAGGAGCTGTCTAATGACTGCAAGGTAGACTGCCACTCAACTAATATGCATAATTGAGAAATAGAAGGAGCTGCACGATAGCTCCGATTCGTAGAAGCAGACCAAACAAAAATGCTATATTTTCTGCTTAATCATGTTACAACAGCTTAGATAGAATAGATAAAATGGAACAGTGTCGGCCATGGAAAATGGAATGGAGGTCAAAAGCCCTTTTCCACGCTAAAGCAATATGTTTTGAGTGAAAAGTTACGCATGAAGCTTGTCTTACCTAGAATGTGTAGAGAAGAGGATTTTATTTGTATTTACGTAATATAGGCATGAGAAGAGTTTAAATGGAATATCATGGACAGTGAGGATTCATAGTAGCTAATCCCAACTTGTTTGGGATTGAAGGGTAATTGTTGTAAGAGTTGTTTTCTGTGCTTGAGGACTACAGAAACCCCTGGTCACTTTGCACTGCGGTTATGCTTGGGAATTCAGGTTGTTCCTAAACATATTGGAGCATATTAGGTCTTGCCAGGATCAGTTAGGGCAGCAGCTGAAAGCTAGCAAGGGCAAAAAGTTGAAAGATGAAGACATGACAAAAAAAGCATGTATTTTTTGATGAACGGTCGGGAGGGAAAGAAATAATAAATGTTTGAAGAGAAATAACCGCCTTTTTTTAGATTAAATTTTTTACGAAGTCCGAACTTATAGTGTTACATGACTTTAATTATTTATGCAACTGTGGAGGATTTATAGATTCCCTACAGTGGAAAAAGGGAATTCGAAGTCCTTTAATGCAAAATATTGTGCTCCTTCTTTGTGCATTTAAATGAAATTTCACATCACATAACCCCAAGAAATAAAAGAAACTCCTTTTGTTACAAATAGAATATATTAGTAAATGCTTGAATATGGTGGACAGTATGGAAAGAGAAACTCCAGACTTTTTGAAGATAGGGGCAGTCATATGCAGGATATAGTTCCACTTTTAATTTGGTGTAAAGAATGGTTGTTAGAGGAGGAGATTTCTTTAGTAGATTTGATAGGGTAGCTGTAATTGTTTCTAGGGGTTTGTTCGGTTGTGGACTTGTGATGATGTGTTCTATGTAAATATGGCTTCCGCACTGTCCTAGTGCTTTCAATACCAAGGCAACCAATTTTGAAAAAAAGAAAAAAAAAAGGTTAGTAAATAATGTGAAAGACTATCTTAGTAAGCTAGTAGTCATGTGTATGAGAGATGAAAATAAACTGTTAATGTGAATAGATTTGGATAAACTATTGAATCCCTTTTTGTCATTAATTTTTTATTCTTTTTTAATAGAATCTTCAAACACATCAAAAGCAACAGGCAGCAAAACATTGCAAGTGCACAATAGTTGATGTCGAGAATATGTTGGCAAAGTTTACTTGGGCAAAAGAAGCACAAATGAAACTTGAGAAGATGA</genome_strand>
        <mrna_strand>AACCCCTCTCAGTCGTCAAGTCTCTTGTCCTTCCGATTCAAAAACAGAAGCAAATCAAAGAGACGAACTCACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACTCATCATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGGTTCATGGATCAACAAGATTAAAGGTGTATTCACCGGCCAACAAACCTCCACAGATGCCGCCAAAGCACCCATTTCCGAGTCATTCACTCTCCTTC...........................................................................................................................GATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTAGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTCAAACACATCAAAAGCAACAGGCAGCAAAACATTGCAAGTGCACAATAGTTGATGTCGAGAATATGTTGGCAAAGTTTACTTGGGCAAAAGAAGCACAAATGAAACTTGAGAAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329766" ref_strand="+" ref_description="SGN-E329766 [cTOD-3-A2]">
      <seq>atgaaatagcaatctattcttttttaatcggagcgacataaatccctaactaaacccctctcagtcgtcaagtctcttgtccttccgattcaaaaacagaagcaaatcaaagagacgaactcacagtaattcatatatgattcgtcctcgaaccctactgttttactcatcatcaatctctcacatttcacacagatgggtttcttccacaacacaactccatgcttcatggatcaacaagattaaaggtgtattcaccggccaaaaaacctccaccgatgccgccaaagtacccatttccgagtcattcactctccttcgatttgcggatgaattgggcagagcaaagaagttggggactctgaagcagtatgttgtggggagaggtagtgaagttacatttgctgaagcttttgagaagcagcaagctattcttcaatatcttggtgcattggatcccactggagagaatcttcaaacacatcaaaagcaacaggcagcaaaacattgcaagtgcacaatagttgatgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="14779" stop="10750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14479" g_stop="14160" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14159" i_stop="14037" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14036" g_stop="13888" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="469" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13887" i_stop="11114" i_length="2774">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11113" g_stop="11050" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="533" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E329766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14479" e_stop="14160"/>
          <exon e_start="14036" e_stop="13888"/>
          <exon e_start="11113" e_stop="11050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAATAGCAATCTATTCTTTTTTAATCGGAGCGACATAAATCCCTAACTAAACCCCTCTCAGTCGTCAAGTCTCTTGTCCTTCCGATTCAAAAACAGAAGCAAATCAAAGAGACGAACTCACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACTCATCATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGCTTCATGGATCAACAAGATTAAAGGTGTATTCACCGGCCAAAAAACCTCCACCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTCGTAAGTTTTATGCACCACTTTAACTATTAGTAAATGTAGATTAGAGGTGGAGCCAAGATTTAAAGTTTATGAGTTTATTCTAGTTTTCTTAAGTTATTGTGTTATAACTCTGTTTGAATTTAGGATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTGGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAGGTTTATACCCATTTACTTTAGCTCTCTCTATTTTAATGTGGTTAATCCTGTAGTATTCTGATTAAATGCCAAGTGTATTAACAAATACTTTATGTAGTTATTGTACTGTTCCCTCTGGTTTCTTTTTGTCTCTTTGGATTCTAGCTAAGTGGAATGCTTATATCCGTTATAGATTCATAAAGCAGTTGGATTCGTTATAAACATACCTACGAAGCGATTGACTAGGAGTGTTGAGTTGAATGATGGAGTTTAGGGGTAACCGTTGATGTTTTTCTTGGTCTGTTTTAAAGCTTTAGTTCCTCTACGCACATAATAAAGTATTGTTAAGTGCAGTTGGGAGGAGGAAAATGATCAGGAAGTAGATAAAGCTGCTCATCCTTTATGCAGAATTGAAAAATTGAAGGTGCTAGGCGATAGACCTAATTCTTTGAAGTGGGGACCAGAAGAAATGGATAATAGTTTCTATTAATTTACATGACAAACTTAAATGATATTACAACAGTTATGCAAACAGAGTAAATGAAAAACGTTATCCATGTAAAATGAAATGGATGTCAAAAGCTTCTCCTGGAGCAGCATGGTTACAATGAATTGCTAGGTCTGCGGCCTTTGTCACTCAGTGCAACCTGTAGAAATAGGTTAGTTTGTCCAACGGGTTTCTATTGCGCTCGAGAAATATGAAAGCCCATATCACCTATTCATATTACTGCAATTATAATTGGGACATCTGGTATGTTCTTAAGCATATTTGGAGTGCAGCTGGTTATGACAGGATCAGCTAATTACACAGTTGAAAGCTGGCAAATGCCGCAAGTTGAAAGGAGAAGCAGACACGCATGAAAGTCACAGTACACCAACAAATAGTTTTTGCAAAATGTCCAAAGAAAGAATTCATAGATCTTTTGAATACAAAGTCATGACTATTTTTTGCTCAAAGTATAGATGTTGTAATGTTTAATTGGTGTACCATGTCTTTTATTCATTGTGTAATTCTTTTGTGGGTTGAATAGATTCATTGTAGTGCTAAAAGTGAATTCAGAGCTCTTTTCTAGGTAGATGTTTTTCACTTTCTTGGTGCACTGAAATAGAGTTTTGCGATACTTGTCCAGAAATAATGAGTCATCATGAAGTATTTTTATAAACTGAGATGTAACCTATCACATTTTATCTTATTAAATTAGTAGTCTTGTGTAGGAGAGATGTAAGAGAAGTGTTTCCTAAACAGGTAAGGACTTCATAAATGTCAACAACCAAGCACTTGGAAAGGACTCGTTAAAATATAAGGAAGCACCTGGAAGGAGTTCCAACATTTAATCAATTTTTTCTTAGATGGTAAGATTAGGATGTGGCAAGATGAATGGAATGAAGAGAAATCCGTTAGGCAAAGCTTCTCATATCTCTACACAATTGTGATGAATCAGAATGCAACTATTGTATGCATATTGGAAGATGGGGACCTAAATTACGTCAGGAGCTGTCTAATGACTGCAAGGTAGACTGCCACTCAACTAATATGCATAATTGAGAAATAGAAGGAGCTGCACGATAGCTCCGATTCGTAGAAGCAGACCAAACAAAAATGCTATATTTTCTGCTTAATCATGTTACAACAGCTTAGATAGAATAGATAAAATGGAACAGTGTCGGCCATGGAAAATGGAATGGAGGTCAAAAGCCCTTTTCCACGCTAAAGCAATATGTTTTGAGTGAAAAGTTACGCATGAAGCTTGTCTTACCTAGAATGTGTAGAGAAGAGGATTTTATTTGTATTTACGTAATATAGGCATGAGAAGAGTTTAAATGGAATATCATGGACAGTGAGGATTCATAGTAGCTAATCCCAACTTGTTTGGGATTGAAGGGTAATTGTTGTAAGAGTTGTTTTCTGTGCTTGAGGACTACAGAAACCCCTGGTCACTTTGCACTGCGGTTATGCTTGGGAATTCAGGTTGTTCCTAAACATATTGGAGCATATTAGGTCTTGCCAGGATCAGTTAGGGCAGCAGCTGAAAGCTAGCAAGGGCAAAAAGTTGAAAGATGAAGACATGACAAAAAAAGCATGTATTTTTTGATGAACGGTCGGGAGGGAAAGAAATAATAAATGTTTGAAGAGAAATAACCGCCTTTTTTTAGATTAAATTTTTTACGAAGTCCGAACTTATAGTGTTACATGACTTTAATTATTTATGCAACTGTGGAGGATTTATAGATTCCCTACAGTGGAAAAAGGGAATTCGAAGTCCTTTAATGCAAAATATTGTGCTCCTTCTTTGTGCATTTAAATGAAATTTCACATCACATAACCCCAAGAAATAAAAGAAACTCCTTTTGTTACAAATAGAATATATTAGTAAATGCTTGAATATGGTGGACAGTATGGAAAGAGAAACTCCAGACTTTTTGAAGATAGGGGCAGTCATATGCAGGATATAGTTCCACTTTTAATTTGGTGTAAAGAATGGTTGTTAGAGGAGGAGATTTCTTTAGTAGATTTGATAGGGTAGCTGTAATTGTTTCTAGGGGTTTGTTCGGTTGTGGACTTGTGATGATGTGTTCTATGTAAATATGGCTTCCGCACTGTCCTAGTGCTTTCAATACCAAGGCAACCAATTTTGAAAAAAAGAAAAAAAAAAGGTTAGTAAATAATGTGAAAGACTATCTTAGTAAGCTAGTAGTCATGTGTATGAGAGATGAAAATAAACTGTTAATGTGAATAGATTTGGATAAACTATTGAATCCCTTTTTGTCATTAATTTTTTATTCTTTTTTAATAGAATCTTCAAACACATCAAAAGCAACAGGCAGCAAAACATTGCAAGTGCACAATAGTTGATGTCG</genome_strand>
        <mrna_strand>ATGAAATAGCAATCTATTCTTTTTTAATCGGAGCGACATAAATCCCTAACTAAACCCCTCTCAGTCGTCAAGTCTCTTGTCCTTCCGATTCAAAAACAGAAGCAAATCAAAGAGACGAACTCACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACTCATCATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGCTTCATGGATCAACAAGATTAAAGGTGTATTCACCGGCCAAAAAACCTCCACCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTC...........................................................................................................................GATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTGGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTCAAACACATCAAAAGCAACAGGCAGCAAAACATTGCAAGTGCACAATAGTTGATGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340060" ref_strand="+" ref_description="SGN-E340060 [cTOF-3-F21]">
      <seq>gagacgaactcacagtaattcatatatgattcgtcctcgaaccctactgttttactcatcatcaatctctcacatttcacacagatgggtttcttccacaacacaactccatgcttcatggatcaacaagattaaaggtgtattcaccggccaaaaaacctccaccgatgccgccaaagtacccatttccgagtcattcactctccttcgatttgcggatgaattgggcagagcaaagaagttggggactctgaagcagtatgttgtggggagaggtagtgaagttacatttgctgaagcttttgagaagcagcaagctattcttcaatatcttggtgcattggatcccactggagaggtttatacccatttactttagctctctctattttaatgtggttaatcctgtagtattctgattaaatgccaagtgtattaacaaatactttatgtagttattgtactgttccctctggtttctttttgtctctttggattctagctaagtggaatgcttatatccgttatagattcataaagcagttggattcgttataaacatacctacgaagcgattgactaggagtgttgagttgaatgatggagtttaggggtaaccgttgatgtttttcttggtctgttttaaagctttagttcctctacgcacataataaagtattgttaagtgcagttgggaggaggaaaatgatcangaagtagataaagctgctcatcctttatgcagaattgaaaattgaaggtgctaggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="14668" stop="13175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14368" g_stop="14160" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14159" i_stop="14037" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14036" g_stop="13475" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="770" r_length="561" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E340060" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14368" e_stop="14160"/>
          <exon e_start="14036" e_stop="13475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACGAACTCACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACTCATCATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGCTTCATGGATCAACAAGATTAAAGGTGTATTCACCGGCCAAAAAACCTCCACCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTCGTAAGTTTTATGCACCACTTTAACTATTAGTAAATGTAGATTAGAGGTGGAGCCAAGATTTAAAGTTTATGAGTTTATTCTAGTTTTCTTAAGTTATTGTGTTATAACTCTGTTTGAATTTAGGATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTGGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAGGTTTATACCCATTTACTTTAGCTCTCTCTATTTTAATGTGGTTAATCCTGTAGTATTCTGATTAAATGCCAAGTGTATTAACAAATACTTTATGTAGTTATTGTACTGTTCCCTCTGGTTTCTTTTTGTCTCTTTGGATTCTAGCTAAGTGGAATGCTTATATCCGTTATAGATTCATAAAGCAGTTGGATTCGTTATAAACATACCTACGAAGCGATTGACTAGGAGTGTTGAGTTGAATGATGGAGTTTAGGGGTAACCGTTGATGTTTTTCTTGGTCTGTTTTAAAGCTTTAGTTCCTCTACGCACATAATAAAGTATTGTTAAGTGCAGTTGGGAGGAGGAAAATGATCAGGAAGTAGATAAAGCTGCTCATCCTTTATGCAGAATTGAAAAATTGAAGGTGCTAGGCG</genome_strand>
        <mrna_strand>GAGACGAACTCACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACTCATCATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGCTTCATGGATCAACAAGATTAAAGGTGTATTCACCGGCCAAAAAACCTCCACCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTC...........................................................................................................................GATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTGGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAGGTTTATACCCATTTACTTTAGCTCTCTCTATTTTAATGTGGTTAATCCTGTAGTATTCTGATTAAATGCCAAGTGTATTAACAAATACTTTATGTAGTTATTGTACTGTTCCCTCTGGTTTCTTTTTGTCTCTTTGGATTCTAGCTAAGTGGAATGCTTATATCCGTTATAGATTCATAAAGCAGTTGGATTCGTTATAAACATACCTACGAAGCGATTGACTAGGAGTGTTGAGTTGAATGATGGAGTTTAGGGGTAACCGTTGATGTTTTTCTTGGTCTGTTTTAAAGCTTTAGTTCCTCTACGCACATAATAAAGTATTGTTAAGTGCAGTTGGGAGGAGGAAAATGATCANGAAGTAGATAAAGCTGCTCATCCTTTATGCAGAATTG-AAAATTGAAGGTGCTAGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343102" ref_strand="+" ref_description="SGN-E343102 [cTOF-11-N6]">
      <seq>ctcacagtaattcatatatgattcgtcctcgaaccctactgttttactcatcatcaatctctcacatttcacacagatgggtttcttccacaacacaactccatgcttcatggatcaacaagattaaaggtgtattcaccggccaaaaaacctccaccgatgccgccaaagtacccatttccgagtcattcactctccttcgatttgcggatgaattgggcagagcaaagaagttggggactctgaagcagtatgttgtggggagaggtagtgaagttacatttgctgaagcttttgagaagcagcaagctattcttcaatatcttggtgcattggatcccactggagaggtttatacccatttactttagctctctctattttaatgtggttaatcctgtagtattctgattaaatgccaagtgtattaacaaatactttatgtagttattgtactgttccctctggtttctttttgtctctttggattctagctaagtggaatgcttatatccgttatagattcataaagcagttggattcgttataaacatacctacgaagcgattgactaggagtgntgagttgaatgatggagtttaggggtaaccggtgatgtttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="14660" stop="13313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14360" g_stop="14160" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14159" i_stop="14037" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14036" g_stop="13613" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="625" r_length="424" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E343102" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14360" e_stop="14160"/>
          <exon e_start="14036" e_stop="13613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACTCATCATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGCTTCATGGATCAACAAGATTAAAGGTGTATTCACCGGCCAAAAAACCTCCACCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTCGTAAGTTTTATGCACCACTTTAACTATTAGTAAATGTAGATTAGAGGTGGAGCCAAGATTTAAAGTTTATGAGTTTATTCTAGTTTTCTTAAGTTATTGTGTTATAACTCTGTTTGAATTTAGGATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTGGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAGGTTTATACCCATTTACTTTAGCTCTCTCTATTTTAATGTGGTTAATCCTGTAGTATTCTGATTAAATGCCAAGTGTATTAACAAATACTTTATGTAGTTATTGTACTGTTCCCTCTGGTTTCTTTTTGTCTCTTTGGATTCTAGCTAAGTGGAATGCTTATATCCGTTATAGATTCATAAAGCAGTTGGATTCGTTATAAACATACCTACGAAGCGATTGACTAGGAGTGTTGAGTTGAATGATGGAGTTTAGGGGTAACCGTTGATGTTTTTCT</genome_strand>
        <mrna_strand>CTCACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACTCATCATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGCTTCATGGATCAACAAGATTAAAGGTGTATTCACCGGCCAAAAAACCTCCACCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTC...........................................................................................................................GATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTGGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAGGTTTATACCCATTTACTTTAGCTCTCTCTATTTTAATGTGGTTAATCCTGTAGTATTCTGATTAAATGCCAAGTGTATTAACAAATACTTTATGTAGTTATTGTACTGTTCCCTCTGGTTTCTTTTTGTCTCTTTGGATTCTAGCTAAGTGGAATGCTTATATCCGTTATAGATTCATAAAGCAGTTGGATTCGTTATAAACATACCTACGAAGCGATTGACTAGGAGTGNTGAGTTGAATGATGGAGTTTAGGGGTAACCGGTGATGTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574916" ref_strand="+" ref_description="SGN-E574916 [34459]">
      <seq>tgaactgtcatgacttattttaactcttcacatgcactattcttagggaaaaaaaaaagccttaaccacatttccacgctcccttcttctcattgattcttctccatcttcatattctctttcaacaactcacaccacgttcgcaacaacaaatctctcaggtgaagagaaggtagctaggtgagatcgcgtaagttgaacgcaaaatgcagagagtaacggtgattgagagattttctaaaacttgccgaagataatccttccctttctaagctcctcattgttttcactgtcagcggtggaggtcttgtggcatactctgaggcaggaaaattgaatgacaattcaaatgctggagcattggttgaggccaacaacagaaaaaagaaagttattgtccttggaactggttgggctggaaccagtttcttgaagaatctgaaggatccttcatatgatgtccaagtgatatctccaagaaattactttgcattcacccctttgcttccaagtgttacatgtggcacagtggaaagtcgcagtgttgttgaaccaattcgcaacattatcagaaagagatatgcagaggcctattactgggaagctgaatgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="53140" stop="55995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53439" g_stop="53594" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.821"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53595" i_stop="53745" i_length="151">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53746" g_stop="53879" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="296" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53880" i_stop="55118" i_length="1239">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.916" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55119" g_stop="55398" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="576" r_length="280" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55399" i_stop="55656" i_length="258">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55657" g_stop="55695" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="615" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E574916" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53439" e_stop="53594"/>
          <exon e_start="53746" e_stop="53879"/>
          <exon e_start="55119" e_stop="55398"/>
          <exon e_start="55657" e_stop="55695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTACATGACTCATTTTAACTCTTCACATTCCCATTTCATAGGGAAAAAAAAAAG---AAGCCTCA-A-CCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAGGTACATATTTTTTTTGATTATTTTGATTTCTATTGCTCCTGAAGTGAATTTAAGGTGATGTTTATGAAAATTTTGTAGCAGTAGTGGTTAAACTGTTTAAGTTTTTGAAGAATTAATGGATGTTTTTTTTTTGTTTAATTTCTATTTACAGGTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCG-TGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAGGTATCTCTTTCGTTAATTTTGGTATGGTTACACGTTTCAATTTGATGAATTACTAGTTTGTTTTATTTAGTTTTCTGATTTTTAGCTACTGTGAAAAAAAAATACATATAGATGCTTGTTGTTGATGATAGGAAAGCTATGTTGAATTTGTATGTGAAGGAATAAGGTGTTGGTTACTTATGACTCGCAGTTGTAGTATGATCAAGTAGTTTCTAGATATAACTATTTTCAGATCTGCTAACTAAAATTGTAAATGATCGCGATGTTGACGAAATGTTCTATCTGCTAAGGGCATTGATATTTTGTACAGTAATTCGATATGGTTCTACATATTAATTCTTATTTAATAGTTTTATACTCTACTATTTACTCATAATCGTATTACTGGGCATGGATTGCAGAGCAAGAATTCCTCCACCTTTGCTCTGTTTCTACTTCTAGTTTTCAGTTATTGATGATCGAATTAGAAGTAAGAATAGTCGTGCAATCCTAATTCCTATGTACAAGTTTAATGTAACTTAATTATGGGTTTAATTCAATAGTAAAAGCATTTTGAATCAGGATTGCTGGAAGATCAGATGATTAATACTTCATGATCAGGCTACAAAATGTTGTTGTCGTGTAGTTCTTTTCGTATGGGGAATGCTAAATGTTTTACCGTAGAGATCTTAAAGTCAAGATAAGAGACTTGTAAATCAAAGATGAATATAGGATATAGAGTGGGGAAGTGGCAGTGAAATGCAGATAGCTGAGAACTGAGGCTGCAAGGGTATATAAGATGAGATATATGCTAGGCTTAAGCTCCCTCCGTACCGTACTAAAATCAGTAAATATGGCATGTCTCTTTAGTACATCCATTTGAAATCCTTTAGTATAGAAGTGCTAAAAATTGCACTATTTGATTATTCTCTACTTATTTCACCTTATATATGAAATATTTCTAAGCATGTTTTCTTGTCATCTATGCTCGAGTAGAGAATATGTCTTTGGGAGCAATATGATGATGCAATTAGTGCATGTAGAGTAGAAAACTTCATTACTAGTGCTTCATAGGCGTGTTTCATTGTCATTGTTATTTCTTTTTGAACTTGGTATGGCTTCTTGTTTTTTCTCCCAAAAATCACCAAGGGGCGTTATTTTTTTCCATTCTACTACCTTCATGGATACTTTTCTACGCAGCCCATGATGTTATCTGTGCAGTGAGTTAGCTCTATTCTGACCCTTTCATATAAATGATAGTGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAGGTTGGAAACAGTAATTTTTTTATTATAGCATTTTGTTTGTTTCATTTTGATTCTTCAATAAAAAGCCTATATAAGCACCTTCACATAATTGTTCCATTGGATAAACCCACACTGAAGCACAATTTATTCATTCAACCATGCGGACATTCTACAAATATAATTATTCCATTCGACTTTTCTATCCATATTATGATTATTAAGGCTAAGTTACTGAAATATCACGTTTCCTCTGATATTAAGTTTACATCCTCCTTGCAGAGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATC</genome_strand>
        <mrna_strand>TGAACTGTCATGACTTATTTTAACTCTTCACATGCACTATTCTTAGGGAAAAAAAAAAGCCTTAACCACATTTCCACGCTCCCTTCTTCTCATTGATTCTTCTCCATCTTCATATTCTCTTTCAACAACTCACACCACGTTCGCAACAACAAATCTCTCAG.......................................................................................................................................................GTGAAGAGAAGGTAGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTGCCGAAGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGGAGGTCTTGTGGCATACTCTGAGGCAGGAAAATTGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTATTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTGATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACAGTGGAAAGTCGCAGTGTTGTTGAACCAATTCGCAACATTATCAGAAAG..................................................................................................................................................................................................................................................................AGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291967" ref_strand="+" ref_description="SGN-E291967 [cLET-7-I22]">
      <seq>gggaaaaaaaaaagaagcctcaaccacgttcccttcttctcattgattcttctccatcttcacgtgctctttcaacaactcacaccacgttcgcaacagcaactctctcaggtgaagagaaggttgctaggtgagatcgcgtaagttgaacgcaaaatgcagagagtcacggtgattgcgagattttctaaaactttccgggataatccttccctttctaagctcctcattgttttcactgtcagaggtggaggtcttgtggcatactccgaggcaggaaaatcgaatgacaattcaaatgctggagcattggttgaggccaacaacagaaaaaagaaagttgttgtccttggaactggctgggctggaaccagtttcttgaagaatctgaaggatccttcatatgatgtccaagtaatatctccaagaaattactttgcattcacccctttgcttccaagtgttacatgtggcacggtagaaagtcgcagtgttgttgaaccaattcgtaacattatcagaaagagatatgcagaggcctattactgggaagctgaatgtatcaaaattgatccagaaaacaagaaggtatattgtcgatcaaatctaagcaccaacggaaatgggaaggaagagtttgcagtagattatgactatcttgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="53184" stop="56095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53484" g_stop="53594" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53595" i_stop="53745" i_length="151">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53746" g_stop="53879" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="245" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53880" i_stop="55118" i_length="1239">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55119" g_stop="55398" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="525" r_length="280" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55399" i_stop="55656" i_length="258">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55657" g_stop="55795" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="664" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E291967" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53484" e_stop="53594"/>
          <exon e_start="53746" e_stop="53879"/>
          <exon e_start="55119" e_stop="55398"/>
          <exon e_start="55657" e_stop="55795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAAAAAAAAGAAGCCTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAGGTACATATTTTTTTTGATTATTTTGATTTCTATTGCTCCTGAAGTGAATTTAAGGTGATGTTTATGAAAATTTTGTAGCAGTAGTGGTTAAACTGTTTAAGTTTTTGAAGAATTAATGGATGTTTTTTTTTTGTTTAATTTCTATTTACAGGTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAGGTATCTCTTTCGTTAATTTTGGTATGGTTACACGTTTCAATTTGATGAATTACTAGTTTGTTTTATTTAGTTTTCTGATTTTTAGCTACTGTGAAAAAAAAATACATATAGATGCTTGTTGTTGATGATAGGAAAGCTATGTTGAATTTGTATGTGAAGGAATAAGGTGTTGGTTACTTATGACTCGCAGTTGTAGTATGATCAAGTAGTTTCTAGATATAACTATTTTCAGATCTGCTAACTAAAATTGTAAATGATCGCGATGTTGACGAAATGTTCTATCTGCTAAGGGCATTGATATTTTGTACAGTAATTCGATATGGTTCTACATATTAATTCTTATTTAATAGTTTTATACTCTACTATTTACTCATAATCGTATTACTGGGCATGGATTGCAGAGCAAGAATTCCTCCACCTTTGCTCTGTTTCTACTTCTAGTTTTCAGTTATTGATGATCGAATTAGAAGTAAGAATAGTCGTGCAATCCTAATTCCTATGTACAAGTTTAATGTAACTTAATTATGGGTTTAATTCAATAGTAAAAGCATTTTGAATCAGGATTGCTGGAAGATCAGATGATTAATACTTCATGATCAGGCTACAAAATGTTGTTGTCGTGTAGTTCTTTTCGTATGGGGAATGCTAAATGTTTTACCGTAGAGATCTTAAAGTCAAGATAAGAGACTTGTAAATCAAAGATGAATATAGGATATAGAGTGGGGAAGTGGCAGTGAAATGCAGATAGCTGAGAACTGAGGCTGCAAGGGTATATAAGATGAGATATATGCTAGGCTTAAGCTCCCTCCGTACCGTACTAAAATCAGTAAATATGGCATGTCTCTTTAGTACATCCATTTGAAATCCTTTAGTATAGAAGTGCTAAAAATTGCACTATTTGATTATTCTCTACTTATTTCACCTTATATATGAAATATTTCTAAGCATGTTTTCTTGTCATCTATGCTCGAGTAGAGAATATGTCTTTGGGAGCAATATGATGATGCAATTAGTGCATGTAGAGTAGAAAACTTCATTACTAGTGCTTCATAGGCGTGTTTCATTGTCATTGTTATTTCTTTTTGAACTTGGTATGGCTTCTTGTTTTTTCTCCCAAAAATCACCAAGGGGCGTTATTTTTTTCCATTCTACTACCTTCATGGATACTTTTCTACGCAGCCCATGATGTTATCTGTGCAGTGAGTTAGCTCTATTCTGACCCTTTCATATAAATGATAGTGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAGGTTGGAAACAGTAATTTTTTTATTATAGCATTTTGTTTGTTTCATTTTGATTCTTCAATAAAAAGCCTATATAAGCACCTTCACATAATTGTTCCATTGGATAAACCCACACTGAAGCACAATTTATTCATTCAACCATGCGGACATTCTACAAATATAATTATTCCATTCGACTTTTCTATCCATATTATGATTATTAAGGCTAAGTTACTGAAATATCACGTTTCCTCTGATATTAAGTTTACATCCTCCTTGCAGAGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATCCAGAAAACAAGAAGGTATATTGTCGATCAAATCTAAGCACCAACGGAAATGGGAAGGAAGAGTTTGCAGTAGATTATGACTATCTTGTCA</genome_strand>
        <mrna_strand>GGGAAAAAAAAAAGAAGCCTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTGCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAG.......................................................................................................................................................GTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTCACGGTGATTGCGAGATTTTCTAAAACTTTCCGGGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGCTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAG..................................................................................................................................................................................................................................................................AGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATCCAGAAAACAAGAAGGTATATTGTCGATCAAATCTAAGCACCAACGGAAATGGGAAGGAAGAGTTTGCAGTAGATTATGACTATCTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540393" ref_strand="+" ref_description="SGN-E540393 [TUS-60-K8]">
      <seq>cctcaaccacgttcccttcttctcattgattcttctccatcttcacgttctctttcaacaactcacaccacgttcgcaacagcaactctctcaggtgaagagaaggttgctaggtgagatcgcgtaagttgaacgcaaaatgcagagagtaacggtgattgagagattttctaaaactttccgtgataatccttccctttctaagctcctcattgttttcactgtcagtggtggaggtcttgtggcatactccgaggcaggaaaatcgaatgacaattcaaatgctggagcattggttgaggccaacaacagaaaaaagaaagttgttgtccttggaactggttgggctggaaccagtttcttgaagaatctgaaggatccttcatatgatgtccaagtaatatctccaagaaattactttgcattcacccctttgcttccaagtgttacatgtggcacggtagaaagtcgcagtgttgttgaaccaattcgtaacattatcagaaagagatatgcagaggcctattactgggaagctgaatgtatcaaaattgatccagaaaacaagaaggtatattgtcgatcaaatctaagcaccaacggaaatgggaaggaagagtttgcagtagattatgactatcttgtcattgccactggagcccgtgtaaatacatttcacattcctggtgttgaagagacacccttcttctgaaggaagtagaagatgctcaaaagatccgtagaactgttattgactgttttgagaagcaagtctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="53201" stop="56370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53501" g_stop="53594" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53595" i_stop="53745" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53746" g_stop="53879" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="228" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53880" i_stop="55118" i_length="1239">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55119" g_stop="55398" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="508" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55399" i_stop="55656" i_length="258">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55657" g_stop="55863" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="714" r_length="206" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55864" i_stop="56005" i_length="142">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56006" g_stop="56070" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="778" r_length="64" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E540393" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53501" e_stop="53594"/>
          <exon e_start="53746" e_stop="53879"/>
          <exon e_start="55119" e_stop="55398"/>
          <exon e_start="55657" e_stop="55863"/>
          <exon e_start="56006" e_stop="56070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAGGTACATATTTTTTTTGATTATTTTGATTTCTATTGCTCCTGAAGTGAATTTAAGGTGATGTTTATGAAAATTTTGTAGCAGTAGTGGTTAAACTGTTTAAGTTTTTGAAGAATTAATGGATGTTTTTTTTTTGTTTAATTTCTATTTACAGGTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAGGTATCTCTTTCGTTAATTTTGGTATGGTTACACGTTTCAATTTGATGAATTACTAGTTTGTTTTATTTAGTTTTCTGATTTTTAGCTACTGTGAAAAAAAAATACATATAGATGCTTGTTGTTGATGATAGGAAAGCTATGTTGAATTTGTATGTGAAGGAATAAGGTGTTGGTTACTTATGACTCGCAGTTGTAGTATGATCAAGTAGTTTCTAGATATAACTATTTTCAGATCTGCTAACTAAAATTGTAAATGATCGCGATGTTGACGAAATGTTCTATCTGCTAAGGGCATTGATATTTTGTACAGTAATTCGATATGGTTCTACATATTAATTCTTATTTAATAGTTTTATACTCTACTATTTACTCATAATCGTATTACTGGGCATGGATTGCAGAGCAAGAATTCCTCCACCTTTGCTCTGTTTCTACTTCTAGTTTTCAGTTATTGATGATCGAATTAGAAGTAAGAATAGTCGTGCAATCCTAATTCCTATGTACAAGTTTAATGTAACTTAATTATGGGTTTAATTCAATAGTAAAAGCATTTTGAATCAGGATTGCTGGAAGATCAGATGATTAATACTTCATGATCAGGCTACAAAATGTTGTTGTCGTGTAGTTCTTTTCGTATGGGGAATGCTAAATGTTTTACCGTAGAGATCTTAAAGTCAAGATAAGAGACTTGTAAATCAAAGATGAATATAGGATATAGAGTGGGGAAGTGGCAGTGAAATGCAGATAGCTGAGAACTGAGGCTGCAAGGGTATATAAGATGAGATATATGCTAGGCTTAAGCTCCCTCCGTACCGTACTAAAATCAGTAAATATGGCATGTCTCTTTAGTACATCCATTTGAAATCCTTTAGTATAGAAGTGCTAAAAATTGCACTATTTGATTATTCTCTACTTATTTCACCTTATATATGAAATATTTCTAAGCATGTTTTCTTGTCATCTATGCTCGAGTAGAGAATATGTCTTTGGGAGCAATATGATGATGCAATTAGTGCATGTAGAGTAGAAAACTTCATTACTAGTGCTTCATAGGCGTGTTTCATTGTCATTGTTATTTCTTTTTGAACTTGGTATGGCTTCTTGTTTTTTCTCCCAAAAATCACCAAGGGGCGTTATTTTTTTCCATTCTACTACCTTCATGGATACTTTTCTACGCAGCCCATGATGTTATCTGTGCAGTGAGTTAGCTCTATTCTGACCCTTTCATATAAATGATAGTGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAGGTTGGAAACAGTAATTTTTTTATTATAGCATTTTGTTTGTTTCATTTTGATTCTTCAATAAAAAGCCTATATAAGCACCTTCACATAATTGTTCCATTGGATAAACCCACACTGAAGCACAATTTATTCATTCAACCATGCGGACATTCTACAAATATAATTATTCCATTCGACTTTTCTATCCATATTATGATTATTAAGGCTAAGTTACTGAAATATCACGTTTCCTCTGATATTAAGTTTACATCCTCCTTGCAGAGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATCCAGAAAACAAGAAGGTATATTGTCGATCAAATCTAAGCACCAACGGAAATGGGAAGGAAGAGTTTGCAGTAGATTATGACTATCTTGTCATTGCCACTGGAGCCCGTGTAAATACATTCAACATTCCTGGTGTTGAAGAGAACACCTTCTTCTTGAAGGTAATCCCCGTTATACCATCTGCAAGTTTGTGATACCAAAAGATTAGGAGTTCGACATAATTTATTTAAGATTAGCTTGGTGACACATTTAGCTCATGCAATACATTGGTCTTGACATTTACATTGGATGCTGTTTGTTCAGGAAGTAGAAGATGCTCAAAAGATCCGTAGAACTGTTATTGACTGTTTTGAGAAAGCAAGTCTGCC</genome_strand>
        <mrna_strand>CCTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAG.......................................................................................................................................................GTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAG..................................................................................................................................................................................................................................................................AGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATCCAGAAAACAAGAAGGTATATTGTCGATCAAATCTAAGCACCAACGGAAATGGGAAGGAAGAGTTTGCAGTAGATTATGACTATCTTGTCATTGCCACTGGAGCCCGTGTAAATACATTTCACATTCCTGGTGTTGAAGAGACACCCTTCTTC-TGAAG..............................................................................................................................................GAAGTAGAAGATGCTCAAAAGATCCGTAGAACTGTTATTGACTGTTTTGAG-AAGCAAGTCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288362" ref_strand="+" ref_description="SGN-E288362 [cLES-16-G23]">
      <seq>ctcaaccacgttcccttcttctcattgattcttctccatcttcacgtgctctttcaacaactcacaccacgttcgcaacagcaactctctcaggtgaagagaaggttgctaggtgagatcgcgtaagttgaacgcaaaatgcagagagtaacggtgattgagagattttctaaaactttccgtgataatccttccctttctaagctcctcattgctttcactgtcagtggtggaggtcttgtggcatactccgaggcaggaaaatcgaatgacaattcaaatgctggagcattggttgaggccaacaacagaaaaaagaaagttgttgtccttggaactggttgggctggaaccagtttcttgaagaatctgaaggatccttcatatgatgtccaagtaatatctccaagaaattactttgcattcacccctttgcttccaagtgttacatgtggcacggtagaaagtcgcagtgttgttgaaccaattcgtaacattatcagaaagagatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="53202" stop="55702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53502" g_stop="53594" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53595" i_stop="53745" i_length="151">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53746" g_stop="53879" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="227" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53880" i_stop="55118" i_length="1239">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55119" g_stop="55398" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="507" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55399" i_stop="55656" i_length="258">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55657" g_stop="55663" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="514" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E288362" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53502" e_stop="53594"/>
          <exon e_start="53746" e_stop="53879"/>
          <exon e_start="55119" e_stop="55398"/>
          <exon e_start="55657" e_stop="55663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAGGTACATATTTTTTTTGATTATTTTGATTTCTATTGCTCCTGAAGTGAATTTAAGGTGATGTTTATGAAAATTTTGTAGCAGTAGTGGTTAAACTGTTTAAGTTTTTGAAGAATTAATGGATGTTTTTTTTTTGTTTAATTTCTATTTACAGGTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAGGTATCTCTTTCGTTAATTTTGGTATGGTTACACGTTTCAATTTGATGAATTACTAGTTTGTTTTATTTAGTTTTCTGATTTTTAGCTACTGTGAAAAAAAAATACATATAGATGCTTGTTGTTGATGATAGGAAAGCTATGTTGAATTTGTATGTGAAGGAATAAGGTGTTGGTTACTTATGACTCGCAGTTGTAGTATGATCAAGTAGTTTCTAGATATAACTATTTTCAGATCTGCTAACTAAAATTGTAAATGATCGCGATGTTGACGAAATGTTCTATCTGCTAAGGGCATTGATATTTTGTACAGTAATTCGATATGGTTCTACATATTAATTCTTATTTAATAGTTTTATACTCTACTATTTACTCATAATCGTATTACTGGGCATGGATTGCAGAGCAAGAATTCCTCCACCTTTGCTCTGTTTCTACTTCTAGTTTTCAGTTATTGATGATCGAATTAGAAGTAAGAATAGTCGTGCAATCCTAATTCCTATGTACAAGTTTAATGTAACTTAATTATGGGTTTAATTCAATAGTAAAAGCATTTTGAATCAGGATTGCTGGAAGATCAGATGATTAATACTTCATGATCAGGCTACAAAATGTTGTTGTCGTGTAGTTCTTTTCGTATGGGGAATGCTAAATGTTTTACCGTAGAGATCTTAAAGTCAAGATAAGAGACTTGTAAATCAAAGATGAATATAGGATATAGAGTGGGGAAGTGGCAGTGAAATGCAGATAGCTGAGAACTGAGGCTGCAAGGGTATATAAGATGAGATATATGCTAGGCTTAAGCTCCCTCCGTACCGTACTAAAATCAGTAAATATGGCATGTCTCTTTAGTACATCCATTTGAAATCCTTTAGTATAGAAGTGCTAAAAATTGCACTATTTGATTATTCTCTACTTATTTCACCTTATATATGAAATATTTCTAAGCATGTTTTCTTGTCATCTATGCTCGAGTAGAGAATATGTCTTTGGGAGCAATATGATGATGCAATTAGTGCATGTAGAGTAGAAAACTTCATTACTAGTGCTTCATAGGCGTGTTTCATTGTCATTGTTATTTCTTTTTGAACTTGGTATGGCTTCTTGTTTTTTCTCCCAAAAATCACCAAGGGGCGTTATTTTTTTCCATTCTACTACCTTCATGGATACTTTTCTACGCAGCCCATGATGTTATCTGTGCAGTGAGTTAGCTCTATTCTGACCCTTTCATATAAATGATAGTGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAGGTTGGAAACAGTAATTTTTTTATTATAGCATTTTGTTTGTTTCATTTTGATTCTTCAATAAAAAGCCTATATAAGCACCTTCACATAATTGTTCCATTGGATAAACCCACACTGAAGCACAATTTATTCATTCAACCATGCGGACATTCTACAAATATAATTATTCCATTCGACTTTTCTATCCATATTATGATTATTAAGGCTAAGTTACTGAAATATCACGTTTCCTCTGATATTAAGTTTACATCCTCCTTGCAGAGATATG</genome_strand>
        <mrna_strand>CTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTGCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAG.......................................................................................................................................................GTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGCTTTCACTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAG..................................................................................................................................................................................................................................................................AGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331733" ref_strand="+" ref_description="SGN-E331733 [cTOD-7-J8]">
      <seq>aaccacgttcccttcttctcattgattcttctccatcttcacgttctctttcaacaactcacaccacgttcgcaacagcaactctctcaggtgaagagaaggttgctaggtgagatcgcgtaagttgaacgcaaaatgcagagagtaacggtgattgagagattttctaaaactttccgtgataatccttccctttctaagctcctcattgttttcactgtcagtggtggaggtcttgtggcatactccgaggcaggaaaatcgaatgacaattcaaatgctggagcattggttgaggccaacaacagaaaaaagaaagttgttgtccttggaactggttgggctggaaccagtttcttgaagaatctgaaggatccttcatatgatgtccaagtaatatctccaagaaattactttgcattcacccctttgcttccaagtgttacatgtggcacggtagaaagtcgcagtgttgttgaaccaattcgtaacattatcagaaagagatatgcagaggcctattactgggaagctgaatgtatcaaaattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="53205" stop="56005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53505" g_stop="53594" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53595" i_stop="53745" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53746" g_stop="53879" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="224" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53880" i_stop="55118" i_length="1239">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55119" g_stop="55398" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="504" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55399" i_stop="55656" i_length="258">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55657" g_stop="55705" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="553" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E331733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53505" e_stop="53594"/>
          <exon e_start="53746" e_stop="53879"/>
          <exon e_start="55119" e_stop="55398"/>
          <exon e_start="55657" e_stop="55705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAGGTACATATTTTTTTTGATTATTTTGATTTCTATTGCTCCTGAAGTGAATTTAAGGTGATGTTTATGAAAATTTTGTAGCAGTAGTGGTTAAACTGTTTAAGTTTTTGAAGAATTAATGGATGTTTTTTTTTTGTTTAATTTCTATTTACAGGTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAGGTATCTCTTTCGTTAATTTTGGTATGGTTACACGTTTCAATTTGATGAATTACTAGTTTGTTTTATTTAGTTTTCTGATTTTTAGCTACTGTGAAAAAAAAATACATATAGATGCTTGTTGTTGATGATAGGAAAGCTATGTTGAATTTGTATGTGAAGGAATAAGGTGTTGGTTACTTATGACTCGCAGTTGTAGTATGATCAAGTAGTTTCTAGATATAACTATTTTCAGATCTGCTAACTAAAATTGTAAATGATCGCGATGTTGACGAAATGTTCTATCTGCTAAGGGCATTGATATTTTGTACAGTAATTCGATATGGTTCTACATATTAATTCTTATTTAATAGTTTTATACTCTACTATTTACTCATAATCGTATTACTGGGCATGGATTGCAGAGCAAGAATTCCTCCACCTTTGCTCTGTTTCTACTTCTAGTTTTCAGTTATTGATGATCGAATTAGAAGTAAGAATAGTCGTGCAATCCTAATTCCTATGTACAAGTTTAATGTAACTTAATTATGGGTTTAATTCAATAGTAAAAGCATTTTGAATCAGGATTGCTGGAAGATCAGATGATTAATACTTCATGATCAGGCTACAAAATGTTGTTGTCGTGTAGTTCTTTTCGTATGGGGAATGCTAAATGTTTTACCGTAGAGATCTTAAAGTCAAGATAAGAGACTTGTAAATCAAAGATGAATATAGGATATAGAGTGGGGAAGTGGCAGTGAAATGCAGATAGCTGAGAACTGAGGCTGCAAGGGTATATAAGATGAGATATATGCTAGGCTTAAGCTCCCTCCGTACCGTACTAAAATCAGTAAATATGGCATGTCTCTTTAGTACATCCATTTGAAATCCTTTAGTATAGAAGTGCTAAAAATTGCACTATTTGATTATTCTCTACTTATTTCACCTTATATATGAAATATTTCTAAGCATGTTTTCTTGTCATCTATGCTCGAGTAGAGAATATGTCTTTGGGAGCAATATGATGATGCAATTAGTGCATGTAGAGTAGAAAACTTCATTACTAGTGCTTCATAGGCGTGTTTCATTGTCATTGTTATTTCTTTTTGAACTTGGTATGGCTTCTTGTTTTTTCTCCCAAAAATCACCAAGGGGCGTTATTTTTTTCCATTCTACTACCTTCATGGATACTTTTCTACGCAGCCCATGATGTTATCTGTGCAGTGAGTTAGCTCTATTCTGACCCTTTCATATAAATGATAGTGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAGGTTGGAAACAGTAATTTTTTTATTATAGCATTTTGTTTGTTTCATTTTGATTCTTCAATAAAAAGCCTATATAAGCACCTTCACATAATTGTTCCATTGGATAAACCCACACTGAAGCACAATTTATTCATTCAACCATGCGGACATTCTACAAATATAATTATTCCATTCGACTTTTCTATCCATATTATGATTATTAAGGCTAAGTTACTGAAATATCACGTTTCCTCTGATATTAAGTTTACATCCTCCTTGCAGAGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATC</genome_strand>
        <mrna_strand>AACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAG.......................................................................................................................................................GTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAG..................................................................................................................................................................................................................................................................AGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254642" ref_strand="+" ref_description="SGN-E254642 [cLEG-29-A16]">
      <seq>gctgtaccctaaggtcaaagatctggtgaagataacacttcttgaggcaacagatcatattttgaacatgtttgacaaaagaattactgcttttgctgaagaaaaattccacagagatggtattgatgtgaaaacagggtcaatggttgtgaaggtaggagaaaaagaaatttctaccaaggatgttaagcgtggagaaataacttctatgccttatggaatggctgtctggtctactggtattggaactcgtccagtaattatggagtttatgaagcacattggtcagggaagcagacgagtgttagcaaccgatgagtggctgcgtgttgagggacaggagaacgtatatgcacttggtgactgtgcaacaatcaaccagcgcaaagtcatggaagatattgctgctatatttcaaaaagcagacaaagataactctggaacacttacagtcaaagaatttcaggaagtccttaatgacatatgtgaaagataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="55888" stop="58412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56188" g_stop="56256" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56257" i_stop="57160" i_length="904">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57161" g_stop="57380" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="289" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57381" i_stop="57473" i_length="93">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57474" g_stop="57578" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="394" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57579" i_stop="58008" i_length="430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58009" g_stop="58112" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="498" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E254642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56188" e_stop="56256"/>
          <exon e_start="57161" e_stop="57380"/>
          <exon e_start="57474" e_stop="57578"/>
          <exon e_start="58009" e_stop="58112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTACCCTAAGGTCAAAGATCTGGTGAAGATAACACTTCTTGAGGCAACAGATCATATTTTGAACATGTAAGACCACACTTCTTTTAAGCATTCCTCTAAAGGATATTTCATATGCATGCTCATACATCATTACTTGAACTACCACCTACTGGAACTTGGAAATATATAGTAGTATATACGTTTACTATCCCGTAAATAGAAGTTCTGGTGGAGTAATACCTCTTTGAGATGCAAGTTTAAGGATGTGATAGAAGTGATTCTTCATGTTTGGCTTTCCAATGATGCCTAGTGATGGATGTTGTCTTCTCTACAGTTTCAGTTTCTGGCTCTTGATTGAGCTTATTGTAAATACAGACTTTGAACCCAAAGGATAGTTTCTTCTCTCGACATTAGGATGTGATACCTGGCATAGGACATTATGCTGTTGAAAGACACGCCAAGCAAAGGACATTTTGGCTGCTAGCCCTTGTTTAACAGTGCTGGGTTTATTGAAAATAATTTTCAGAATGAGCAAAACAGAAAATCATCCAGTTCTGTTCCTTTTCGTCTTCTCTTTTTTCTTTCTTTCTTTTATTTGGAGATAGGTGAAGTAAATCAGGCTGCTTCTCAGTGGTATGCCTTCAAAGAACTGACTAATAATGACATACTAAAATGGGTAATATAACTTTGTAAAGAGGTTGAAACAGAGCAGATTCACCATTTTATTCCAAAATCTAGTAGTTTATGCAGATCTTTTCAGTAGATGCCTTTTTGTTGTTTGGTAGTAAAAATTTTGCAAAAAAAATTGGTGATTTATTAGCTCAGAGACATCTAAAGTCGTAAGTGCTGCTATGTGATTGGTGATGCCTGAGCAGATTCAAGTATTTCTAGTTATACTGCAACCGTTTTAACTTGAGACATGCATCTTCTATTATGAGCTCATTTTTCAATATCACTTGTGTTCTGATATTAATCTGTTTATCATTTATAGGTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAGGTATTTTGTCTTGTTTAGTGGAGCTAATTTAATGCCTCTGTCAAGCTTTTGTTGGTATTTTTGTCAGTTATATGTAATACTATTTGCTAACAGGGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATGGTAATCTCACTCACTTCCTGATCACATTTCTTTCCTTGTACATATTGGGTAGTCATTCTATCCAGCATTCCACTAGAATGTGCTATTTGTGTTCATCTATTATGTTAACCAGTTTGAGTAGATAGTAACATTCAATTTCATCTTCTTTTTTCCCTTGATGGCAATACATTTGAAGCTTAGCTAGGAAATATATACAATCCACACTACACACCGGAATATTTCTCACTTTACTTCATTTGATTAAGAAGTGGTATGGAGCAGACAGTGATTTTCAGGGTACTTGTTTGATATTAGCAGTACTCTTTGGTTAATTAACATAGGGGACAGTCAGCTTCTGACAAAGTAGAACTTCTTTGAACTTTGAATTGACATTAGATATTAAATTGTGCAAATACTGATCTTTGTTTCACAAAATGTTCTCATTGTTCAGGAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCC</genome_strand>
        <mrna_strand>GCTGTACCCTAAGGTCAAAGATCTGGTGAAGATAACACTTCTTGAGGCAACAGATCATATTTTGAACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAG.............................................................................................GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253989" ref_strand="+" ref_description="SGN-E253989 [cLEG-34-C15]">
      <seq>tgtaccctaaggtcaaagatctggtgaagataacacttcttgaggcaacagatcatattttgaacatgtttgacaaaagaattactgcttttgctgaagaaaaattccacagagatggtattgatgtgaaaacagggtcaatggttgtgaaggtaggagaaaaagaaatttctaccaaggatgttaagcgtggagaaataacttctatgccttatggaatggctgtctggtctactggtattggaactcgtccagtaattatggagtttatgaagcacattggtcagggaagcagacgagtgttagcaaccgatgagtggctgcgtgttgagggacaggagaacgtatatgcacttggtgactgtgcaacaatcaaccagcgcaaagtcatggaagatattgctgctatatttcaaaaagcagacaaagataactctggaacacttacagtcaaagaatttcaggaagtccttaatgacatatgtgaaagatacccgcaagtggagctttacttgaaaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="55890" stop="58439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56190" g_stop="56256" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56257" i_stop="57160" i_length="904">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57161" g_stop="57380" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="287" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57381" i_stop="57473" i_length="93">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57474" g_stop="57578" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="392" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57579" i_stop="58008" i_length="430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58009" g_stop="58139" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="523" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E253989" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56190" e_stop="56256"/>
          <exon e_start="57161" e_stop="57380"/>
          <exon e_start="57474" e_stop="57578"/>
          <exon e_start="58009" e_stop="58139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACCCTAAGGTCAAAGATCTGGTGAAGATAACACTTCTTGAGGCAACAGATCATATTTTGAACATGTAAGACCACACTTCTTTTAAGCATTCCTCTAAAGGATATTTCATATGCATGCTCATACATCATTACTTGAACTACCACCTACTGGAACTTGGAAATATATAGTAGTATATACGTTTACTATCCCGTAAATAGAAGTTCTGGTGGAGTAATACCTCTTTGAGATGCAAGTTTAAGGATGTGATAGAAGTGATTCTTCATGTTTGGCTTTCCAATGATGCCTAGTGATGGATGTTGTCTTCTCTACAGTTTCAGTTTCTGGCTCTTGATTGAGCTTATTGTAAATACAGACTTTGAACCCAAAGGATAGTTTCTTCTCTCGACATTAGGATGTGATACCTGGCATAGGACATTATGCTGTTGAAAGACACGCCAAGCAAAGGACATTTTGGCTGCTAGCCCTTGTTTAACAGTGCTGGGTTTATTGAAAATAATTTTCAGAATGAGCAAAACAGAAAATCATCCAGTTCTGTTCCTTTTCGTCTTCTCTTTTTTCTTTCTTTCTTTTATTTGGAGATAGGTGAAGTAAATCAGGCTGCTTCTCAGTGGTATGCCTTCAAAGAACTGACTAATAATGACATACTAAAATGGGTAATATAACTTTGTAAAGAGGTTGAAACAGAGCAGATTCACCATTTTATTCCAAAATCTAGTAGTTTATGCAGATCTTTTCAGTAGATGCCTTTTTGTTGTTTGGTAGTAAAAATTTTGCAAAAAAAATTGGTGATTTATTAGCTCAGAGACATCTAAAGTCGTAAGTGCTGCTATGTGATTGGTGATGCCTGAGCAGATTCAAGTATTTCTAGTTATACTGCAACCGTTTTAACTTGAGACATGCATCTTCTATTATGAGCTCATTTTTCAATATCACTTGTGTTCTGATATTAATCTGTTTATCATTTATAGGTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAGGTATTTTGTCTTGTTTAGTGGAGCTAATTTAATGCCTCTGTCAAGCTTTTGTTGGTATTTTTGTCAGTTATATGTAATACTATTTGCTAACAGGGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATGGTAATCTCACTCACTTCCTGATCACATTTCTTTCCTTGTACATATTGGGTAGTCATTCTATCCAGCATTCCACTAGAATGTGCTATTTGTGTTCATCTATTATGTTAACCAGTTTGAGTAGATAGTAACATTCAATTTCATCTTCTTTTTTCCCTTGATGGCAATACATTTGAAGCTTAGCTAGGAAATATATACAATCCACACTACACACCGGAATATTTCTCACTTTACTTCATTTGATTAAGAAGTGGTATGGAGCAGACAGTGATTTTCAGGGTACTTGTTTGATATTAGCAGTACTCTTTGGTTAATTAACATAGGGGACAGTCAGCTTCTGACAAAGTAGAACTTCTTTGAACTTTGAATTGACATTAGATATTAAATTGTGCAAATACTGATCTTTGTTTCACAAAATGTTCTCATTGTTCAGGAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAA</genome_strand>
        <mrna_strand>TGTACCCTAAGGTCAAAGATCTGGTGAAGATAACACTTCTTGAGGCAACAGATCATATTTTGAACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAG.............................................................................................GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAAGTGGAGCTTTACTTGAAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371006" ref_strand="+" ref_description="SGN-E371006 [TUS-29-L11]">
      <seq>ttgaacatgtttgacaaaagaattactgcttttgctgaagaaaaattccacagagatggtattgatgtgaaaacagggtcaatggttgtgaaggtaggagaaaaagaaatttctaccaaggatgttaagcgtggagaaataacttctatgccttatggaatggctgtctggtctactggtattggaactcgtccagtaattatggagtttatgaagcacattggtcagggaagcagacgagtgttagcaaccgatgagtggctgcgtgttgagggacaggagaacgtatatgcacttggtgactgtgcaacaatcaaccagcgcaaagtcatggaagatattgctgctatatttcaaaaagcagacaaagataactctggaacacttacagtcaaagaatttcaggaagtccttaatgacatatgtgaaagatacccgcaggtggagctttacttgaaaaataaaaaaatgagtaatcttgtcgatctcttgaaagaatcgaaaggtaatggtgttaaggagtcgattgaggtggacattgaagaatttaaatctgctctgtcccaagtggatactgatatgaagaatcttccagcaacagctcatgttgcatctcagcaaggtgtctacttagctaaatgctttaatcgtatggaggaatgtgaaaaaaatccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="56857" stop="58749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57161" g_stop="57380" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="228" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57381" i_stop="57473" i_length="93">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57474" g_stop="57578" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="333" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57579" i_stop="58008" i_length="430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58009" g_stop="58281" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="606" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58282" i_stop="58380" i_length="99">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58381" g_stop="58449" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="675" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E371006" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57161" e_stop="57380"/>
          <exon e_start="57474" e_stop="57578"/>
          <exon e_start="58009" e_stop="58281"/>
          <exon e_start="58381" e_stop="58449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAGGTATTTTGTCTTGTTTAGTGGAGCTAATTTAATGCCTCTGTCAAGCTTTTGTTGGTATTTTTGTCAGTTATATGTAATACTATTTGCTAACAGGGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATGGTAATCTCACTCACTTCCTGATCACATTTCTTTCCTTGTACATATTGGGTAGTCATTCTATCCAGCATTCCACTAGAATGTGCTATTTGTGTTCATCTATTATGTTAACCAGTTTGAGTAGATAGTAACATTCAATTTCATCTTCTTTTTTCCCTTGATGGCAATACATTTGAAGCTTAGCTAGGAAATATATACAATCCACACTACACACCGGAATATTTCTCACTTTACTTCATTTGATTAAGAAGTGGTATGGAGCAGACAGTGATTTTCAGGGTACTTGTTTGATATTAGCAGTACTCTTTGGTTAATTAACATAGGGGACAGTCAGCTTCTGACAAAGTAGAACTTCTTTGAACTTTGAATTGACATTAGATATTAAATTGTGCAAATACTGATCTTTGTTTCACAAAATGTTCTCATTGTTCAGGAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAGGTATTATGCAGACAAGATTACCTGTGTAGCTTCTATGTGTTTGTACTGGATGGACAAATGTTTAAATATCTTATGTCGTATGTGCAACGACTATTTCAGGTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCG</genome_strand>
        <mrna_strand>GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAG.............................................................................................GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAGGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAT...................................................................................................GTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370451" ref_strand="+" ref_description="SGN-E370451 [TUS-29-K11]">
      <seq>ttgaacatgtttgacaaaagaattactgcttttgctgaagaaaaattccacagagatggtattgatgtgaaaacagggtcaatggttgtgaaggtaggagaaaaagaaatttctaccaaggatgttaagcgtggagaaataacttctatgccttatggaatggctgtctggtctactggtattggaactcgtccagtaattatggagtttatgaagcacattggtcagggaagcagacgagtgttagcaaccgatgagtggctgcgtgttgagggacaggagaacgtatatgcacttggtgactgtgcaacaatcaaccagcgcaaagtcatggaagatattgctgctatatttcaaaaagcagacaaagataactctggaacacttacagtcaaagaatttcaggaagtccttaatgacatatgtgaaagatacccgcaggtggagctttacttgaaaaataacaaaatgagtaatcttgtcgatctcttgaaagaatcgaaaggtgatggtgttaaggagtcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="56857" stop="58503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57161" g_stop="57380" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="228" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57381" i_stop="57473" i_length="93">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57474" g_stop="57578" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="333" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57579" i_stop="58008" i_length="430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58009" g_stop="58203" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="528" r_length="195" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E370451" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57161" e_stop="57380"/>
          <exon e_start="57474" e_stop="57578"/>
          <exon e_start="58009" e_stop="58203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAGGTATTTTGTCTTGTTTAGTGGAGCTAATTTAATGCCTCTGTCAAGCTTTTGTTGGTATTTTTGTCAGTTATATGTAATACTATTTGCTAACAGGGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATGGTAATCTCACTCACTTCCTGATCACATTTCTTTCCTTGTACATATTGGGTAGTCATTCTATCCAGCATTCCACTAGAATGTGCTATTTGTGTTCATCTATTATGTTAACCAGTTTGAGTAGATAGTAACATTCAATTTCATCTTCTTTTTTCCCTTGATGGCAATACATTTGAAGCTTAGCTAGGAAATATATACAATCCACACTACACACCGGAATATTTCTCACTTTACTTCATTTGATTAAGAAGTGGTATGGAGCAGACAGTGATTTTCAGGGTACTTGTTTGATATTAGCAGTACTCTTTGGTTAATTAACATAGGGGACAGTCAGCTTCTGACAAAGTAGAACTTCTTTGAACTTTGAATTGACATTAGATATTAAATTGTGCAAATACTGATCTTTGTTTCACAAAATGTTCTCATTGTTCAGGAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATT</genome_strand>
        <mrna_strand>GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAG.............................................................................................GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAACAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTGATGGTGTTAAGGAGTCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280409" ref_strand="+" ref_description="SGN-E280409 [cLER-1-N17]">
      <seq>ttgaacatgtttgacaaaagaattactgcttttgctgaagaaaaattccacagagatggtattgatgtgaaaacagggtcaatggttgtgaaggtaggagaaaaagaaatttctaccaaggatgttaagcgtggagaaataacttctatgccttatggaatggctgtctggtctactggtattggaactcgtccagtaattatggagtttatgaagcacattggtcagggaagcagacgagtgttagcaaccgatgagtggctgcgtgttgagggacaggagaacgtatatgcacttggtgactgtgcaacaatcaaccagcgcaaagtcatggaagatattgctgctatatttcaaaaagcagacaaagataactctggaacacttacagtcaaagaatttcaggaagtccttaatgacatatgtgaaagatacccgcaggtggagctttacttgaaaaataaaaaaatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="56857" stop="58449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57161" g_stop="57380" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="228" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57381" i_stop="57473" i_length="93">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57474" g_stop="57578" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="333" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57579" i_stop="58008" i_length="430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58009" g_stop="58149" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="474" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E280409" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57161" e_stop="57380"/>
          <exon e_start="57474" e_stop="57578"/>
          <exon e_start="58009" e_stop="58149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAGGTATTTTGTCTTGTTTAGTGGAGCTAATTTAATGCCTCTGTCAAGCTTTTGTTGGTATTTTTGTCAGTTATATGTAATACTATTTGCTAACAGGGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATGGTAATCTCACTCACTTCCTGATCACATTTCTTTCCTTGTACATATTGGGTAGTCATTCTATCCAGCATTCCACTAGAATGTGCTATTTGTGTTCATCTATTATGTTAACCAGTTTGAGTAGATAGTAACATTCAATTTCATCTTCTTTTTTCCCTTGATGGCAATACATTTGAAGCTTAGCTAGGAAATATATACAATCCACACTACACACCGGAATATTTCTCACTTTACTTCATTTGATTAAGAAGTGGTATGGAGCAGACAGTGATTTTCAGGGTACTTGTTTGATATTAGCAGTACTCTTTGGTTAATTAACATAGGGGACAGTCAGCTTCTGACAAAGTAGAACTTCTTTGAACTTTGAATTGACATTAGATATTAAATTGTGCAAATACTGATCTTTGTTTCACAAAATGTTCTCATTGTTCAGGAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGT</genome_strand>
        <mrna_strand>GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAG.............................................................................................GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705406" ref_strand="+" ref_description="SGN-E705406 [FA27AC03]">
      <seq>gccattagacgagtgttagcaaccgatgagtggctgcgtgttgagggacaggagaacgtatatgcacttggtgactgtgcaacaatcaaccagcgcaaagtcatggaagatattgctgctatatttcaaaaagcagacaaagataactctggaacacttacagtcaaagaatttcaggaagtccttaatgacatatgtgaaagatacccgcaggtggagctttacttgaaaaataaaaaaatgagtaatcttgtcgatctcttgaaagaatcgaaaggtaatggtgttaaagagtcgattgaggtggacattgaagaatttaaatctgctctgtcccaagtggatactgatatgaagaatcttccagcaacagctcaggttgcatctcagcaaggtgtctacttagctaaatgctttaatcgtatggaggaatgtgaaaaaaatccggaaggtcctcttcggtttagaggagaaggccgccatcgctttcacccattcaggtaccgacatttgggacagtttgcacctttgggaggagagcaaacagcagcacaacttccaggagattgggtttcaattggtcatagcagtcagtggctatggtattctgtgtatgctagcaaacaagtcagttggcgtacaagggcattggttgtctctgactgggtaagacggttcatatttggaagagactcgagccagatttaaggtgttacgccccagtggatttatcttgaaattccattangctgttaccaaaagttttttgatgtgaatcctaacggatttgtttgtttaattcttttaccaaacaacttggcattggtcgtttgtgggtttcctgccatcacaattttgcagctacacgaacatagagaacccaattttctataattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="57180" stop="59577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57474" g_stop="57578" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57579" i_stop="58008" i_length="430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58009" g_stop="58281" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="378" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58282" i_stop="58380" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58381" g_stop="58502" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="500" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58503" i_stop="58787" i_length="285">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58788" g_stop="58907" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="620" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58908" i_stop="59000" i_length="93">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59001" g_stop="59277" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="897" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E705406" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57474" e_stop="57578"/>
          <exon e_start="58009" e_stop="58281"/>
          <exon e_start="58381" e_stop="58502"/>
          <exon e_start="58788" e_stop="58907"/>
          <exon e_start="59001" e_stop="59277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATGGTAATCTCACTCACTTCCTGATCACATTTCTTTCCTTGTACATATTGGGTAGTCATTCTATCCAGCATTCCACTAGAATGTGCTATTTGTGTTCATCTATTATGTTAACCAGTTTGAGTAGATAGTAACATTCAATTTCATCTTCTTTTTTCCCTTGATGGCAATACATTTGAAGCTTAGCTAGGAAATATATACAATCCACACTACACACCGGAATATTTCTCACTTTACTTCATTTGATTAAGAAGTGGTATGGAGCAGACAGTGATTTTCAGGGTACTTGTTTGATATTAGCAGTACTCTTTGGTTAATTAACATAGGGGACAGTCAGCTTCTGACAAAGTAGAACTTCTTTGAACTTTGAATTGACATTAGATATTAAATTGTGCAAATACTGATCTTTGTTTCACAAAATGTTCTCATTGTTCAGGAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAGGTATTATGCAGACAAGATTACCTGTGTAGCTTCTATGTGTTTGTACTGGATGGACAAATGTTTAAATATCTTATGTCGTATGTGCAACGACTATTTCAGGTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAGGTAGAAGTTGGATTTGTCTGATCATTTTGCACCATCTCTCTATGGGATCATGTTCCTCAGACCAACATGAATGAAGTGGGATAAAGTAACACAATTTTGCTAATGGTCTCATGCAGTATATTAATTTTTGAAACAAGTATGCTTAGAAAGCTTGTCTTGAGTATGCACACAATCATTAATGGGAAGGAAGTATAAACAGGATGAATGGGACAAAAGCTCTGGATTGTGATTTTGGCTTGAAAAAGTTTCTATATTTTTTAACAGCTGTTTAAATGCTTGTTCCAGGTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAGGTAATTTATTCCAAGCTTCTGTCTTGTTGCTTCTCCATCAACCTTCATTTGATCTTTTGGATATATCTGATAACCATGTTTTTGATTCTCCAGCAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTG</genome_strand>
        <mrna_strand>GCCATTAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAG...................................................................................................GTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAG.............................................................................................................................................................................................................................................................................................GTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAG.............................................................................................CAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTANGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548377" ref_strand="+" ref_description="SGN-E548377 [TUS-60-K8](-)">
      <seq>ttgaaaaataaaaaaatgagtaatcttgtcgatctcttgaaagaatcgaaaggtaatggtgttaaagagtcgattgaggtggacattgaagaatttaaatctgctctgtcccaagtggatactgatatgaagaatcttccagcaacagctcaggttgcatctcagcaaggtgtctacttagctaaatgctttaatcgtatggaggaatgtgaaaaaaatccggaaggtcctcttcggtttagaggagaaggccgccatcgctttcacccattcaggtaccgacatttgggacagtttgcacctttgggaggagagcaaacagcagcacaacttccaggagattgggtttcaattggtcatagcagtcagtggctatggtattctgtgtatgctagcaaacaagtcagttggcgtacaagggcattggttgtctctgactgggtaagacggttcatatttggaagagactcgagccagatttaaggtgttacgccccagtggatttatcttgaaattccattaggctgttaccaaaagttttttgatgtgaatcctaacggatttgtttgtttaattcttttaccaaacaacttggcattggtcgtttgtgggtttcctgccatcacaattttgcagctacacgaacatagagaacccaattttctataattgcatcataataaaggtgaaatgaacatctataggagggatgttaaattgtaatttgaattattccatatattgctcaggtgttctattttgaataacatccggctaagcctttaatgtcacaatgtttaatggagtataagttttggtattttttggatgaagtaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="57829" stop="59747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58129" g_stop="58281" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58282" i_stop="58380" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58381" g_stop="58502" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="275" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58503" i_stop="58787" i_length="285">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58788" g_stop="58907" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="395" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58908" i_stop="59000" i_length="93">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59001" g_stop="59454" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="849" r_length="454" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E548377" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58129" e_stop="58281"/>
          <exon e_start="58381" e_stop="58502"/>
          <exon e_start="58788" e_stop="58907"/>
          <exon e_start="59001" e_stop="59454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAGGTATTATGCAGACAAGATTACCTGTGTAGCTTCTATGTGTTTGTACTGGATGGACAAATGTTTAAATATCTTATGTCGTATGTGCAACGACTATTTCAGGTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAGGTAGAAGTTGGATTTGTCTGATCATTTTGCACCATCTCTCTATGGGATCATGTTCCTCAGACCAACATGAATGAAGTGGGATAAAGTAACACAATTTTGCTAATGGTCTCATGCAGTATATTAATTTTTGAAACAAGTATGCTTAGAAAGCTTGTCTTGAGTATGCACACAATCATTAATGGGAAGGAAGTATAAACAGGATGAATGGGACAAAAGCTCTGGATTGTGATTTTGGCTTGAAAAAGTTTCTATATTTTTTAACAGCTGTTTAAATGCTTGTTCCAGGTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAGGTAATTTATTCCAAGCTTCTGTCTTGTTGCTTCTCCATCAACCTTCATTTGATCTTTTGGATATATCTGATAACCATGTTTTTGATTCTCCAGCAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGGATGAAGTAACTAAATCATTGC</genome_strand>
        <mrna_strand>TTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAG...................................................................................................GTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAG.............................................................................................................................................................................................................................................................................................GTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAG.............................................................................................CAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGGATGAAGTAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371005" ref_strand="+" ref_description="SGN-E371005 [TUS-29-L11](-)">
      <seq>tccagcaacagctcaggttgcatctcagcaaggtgtctacttagctaaatgctttaatcgtatggaggaatgtgaaaaaaatccggaaggtcctcttcggtttagaggagaaggccgccatcgctttcacccattcaggtaccgacatttgggacagtttgcacctttgggaggagagcaaacagcagcacaacttccaggagattgggtttcaattggtcatagcagtcagtggctatggtattctgtgtatgctagcaaacaagtcagttggcgtacaagggcattggttgtctctgactgggtaagacggttcatatttggaagagactcgagccagatttaaggtgttacgccccagtggatttatcttgaaattccattaggctgttaccaaaagttttttgatgtgaatcctaacggatttgtttgtttaattcttttaccaaacaacttggcattggtcgtttgtgggtttcctgccatcacaattttgcagctacacgaacatagagaacccaattttctataattgcatcataataaaggtgaaatgaacatctataggagggatgttaaattgtaatttgaattattccatatattgctcaggtgttctattttgaataacatccggctaagcctttaatgtcacaatgtttaatggagtataagttttggtattttttggatgaagtaactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="58063" stop="59747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58266" g_stop="58281" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58282" i_stop="58380" i_length="99">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58381" g_stop="58502" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="138" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58503" i_stop="58787" i_length="285">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58788" g_stop="58907" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="258" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58908" i_stop="59000" i_length="93">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59001" g_stop="59456" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="714" r_length="456" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E371005" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58266" e_stop="58281"/>
          <exon e_start="58381" e_stop="58502"/>
          <exon e_start="58788" e_stop="58907"/>
          <exon e_start="59001" e_stop="59456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCAACAGCTCAGGTATTATGCAGACAAGATTACCTGTGTAGCTTCTATGTGTTTGTACTGGATGGACAAATGTTTAAATATCTTATGTCGTATGTGCAACGACTATTTCAGGTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAGGTAGAAGTTGGATTTGTCTGATCATTTTGCACCATCTCTCTATGGGATCATGTTCCTCAGACCAACATGAATGAAGTGGGATAAAGTAACACAATTTTGCTAATGGTCTCATGCAGTATATTAATTTTTGAAACAAGTATGCTTAGAAAGCTTGTCTTGAGTATGCACACAATCATTAATGGGAAGGAAGTATAAACAGGATGAATGGGACAAAAGCTCTGGATTGTGATTTTGGCTTGAAAAAGTTTCTATATTTTTTAACAGCTGTTTAAATGCTTGTTCCAGGTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAGGTAATTTATTCCAAGCTTCTGTCTTGTTGCTTCTCCATCAACCTTCATTTGATCTTTTGGATATATCTGATAACCATGTTTTTGATTCTCCAGCAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGGATGAAGTAACTAAATCATTGCTG</genome_strand>
        <mrna_strand>TCCAGCAACAGCTCAG...................................................................................................GTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAG.............................................................................................................................................................................................................................................................................................GTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAG.............................................................................................CAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGGATGAAGTAACTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690063" ref_strand="+" ref_description="SGN-E690063 [LH_Ea02I13]">
      <seq>ctccagtggatttatcttgaaattccattaggctgttaccaaaagttttttgatgtgaatcctaacggatttgtttgtttaattcttttaccaaacaacttggcattggttgtttgtgggtttcctgccatcacaattttgcagctacacgaagtactacatagagaacccaattttctataattgcatcataataaaggtgaaatgaacatctataggagggatgttaaattgtaatttgaattattccatatattgctcaggtgttctattttgaataacatccggctaagccttttaatgtcacaatgttcaatggagtataagttttggtatttttcggttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="58800" stop="59747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59098" g_stop="59450" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E690063" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59098" e_stop="59450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACAC---G-A--ACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCC-TTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGGATGAAGTAACTAAATCA</genome_strand>
        <mrna_strand>CTCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTTGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAAGTACTACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTTAATGTCACAATGTTCAATGGAGTATAAGTTTTGGTATTTTTCGGTTGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693903" ref_strand="+" ref_description="SGN-E693903 [LH_Ea02I13](-)">
      <seq>ctccagtggatttatcttgaaattccattaggctgttaccaaaagttttttgatgtgaatcctaacggatttgtttgtttaattcttttaccaaacaacttggcattggttgtttgtgggtttcctgccatcacaattttgcagctacacgaagtactacatagagaacccaattttctataattgcatcataataaaggtgaaatgaacatctataggagggatgttaaattgtaatttgaattattccatatattgctcaggtgttctattttgaataacatccggctaagccttttaatgtcacaatgttcaatggagtataagttttggtatttttcggtgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="58800" stop="59747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59098" g_stop="59433" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="366"/>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E693903" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59098" e_stop="59433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACAC---G-A--ACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCC-TTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGG</genome_strand>
        <mrna_strand>CTCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTTGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAAGTACTACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTTAATGTCACAATGTTCAATGGAGTATAAGTTTTGGTATTTTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578979" ref_strand="+" ref_description="SGN-E578979 [86102]">
      <seq>aaagtgtccacatttttcaccattctcaagactgagttttcttgagatggaaatgaatccgagcttgaaaaaaccgagggaatctgtagatttatcgaactcatcggagttaactcagtcagcattcccagatgaggtgttggagaaggtgttgtctcttgttcagtctcataaagatagaaattcagcttcactggtgtgcaaggattggtataatgcagagcgttggacaaggactaagctgtttattgggaattgctattcagttactcctgagattgtagcaagaagattcccaaagattaagagtgttacccttaaagggaaaccaagattttctgactttaatttggtaccagagaattggggtgctgatattcaggcttggcttgatgtttttgccaaagtttacccctttcttgaggagttgagattgaaaagaatggctgttagtgatgagagtttggagtttttggcaaaatcatttcttggatttaaggctctctcattgttgagttgtgatggttttagcactgatgggatcagtagcattgctgctcactgcaagaacttgacagagctggacattcaggagaatggcatggatgatatttgtggtagttggctaagttgttttccggatgacttcacatcactggaggtgcttaactttgcctgtatgaacactgagatcagtaaagatgctttaagagagacttgtcgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="73539" stop="76705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73839" g_stop="73874" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73875" i_stop="74404" i_length="530">
            <donor d_prob="0.812" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74405" g_stop="74936" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="567" r_length="531" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74937" i_stop="76247" i_length="1311">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76248" g_stop="76401" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="722" r_length="155" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E578979" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73839" e_stop="73874"/>
          <exon e_start="74405" e_stop="74936"/>
          <exon e_start="76248" e_stop="76401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGTCCACATTTTTCACCACTCTCAAGACTGAGGTATGAAATAAAAATAAGAAGAAGAAAAAAGCCAACAGCTTTTTCAATTCGTGTTCAAATCCAGTTTGTTTTTTTCTCTTACAACTCACGCTTTTCTTCCTGTTTTTCTTGTAATTGTTCTGAAATTTTACTGATTCTTTTCCTCTTTTTCTTTTGTTTTTTTCTGTGTGTTAGATTGATATAAGCATGGTTTTTTCTGGCCCATTTCTTTTATCTGCTTTTTTTCAGTAGCATTTCAGAAATTTCTCAGCCTTTTTTCTCTTTTAGAGTTTAGACCCATCTCTCTTGCTCTGTTTTCTTGAAGCTCTAAATTGGAGTAGAAGAACTGATTGCAGATGATGTTTTCTTTTTGAAATTCAGGTGACTCAAGATGGTTTTTGTTTTTGTTTTTTACAAATCTTGAAAGCTAGTTTTTCTATGTTTATTCAACTGAGGGGGTTAAAGCTGGAATCTTGCTGTTGAAAATTTTGTCAGCATGTTGAAAAATAGGATAAAGATTTGAACTTTGAGTTGTTTTGATTTCAGTTCAGTTTTTCTTGAGATGGAAATGAATCCGAGCTTGAAAAAACCGAGGGAATCTGTAGATTTATCGAAAATGTCGGAGTTATCTCAGTCAGCATTCCCAGATGAGGTGTTGGAGAAGGTGTTGTCTCTTGTTCAGTCTCATAAAGACAGAAATTCAGCTTCATTGGTGTGCAAAGATTGGTATAATGCAGAGCGTTGGACAAGAACTAAGCTGTTTATTGGAAATTGCTATTCAGTTACTCCTGAGATTGTAGCAAGAAGATTTCCCAAGATTAAGAGTGTTACCCTTAAGGGGAAACCAAGATTTTCTGACTTTAATTTGGTACCTGAGAATTGGGGTGCTGATATTCAGGCTTGGCTTGATGTTTTTGCCAAAGTTTACCCCTTTCTTGAGGAGTTGAGATTGAAAAGAATGGCTGTTACTGATGAGAGTTTGGAGTTTTTGGCAAAATCATTTCTTGGATTTAAGGCTCTGTCATTGTTGAGTTGTGACGGTTTTAGCACTGATGGGATCGGTAGCATTGCTGCTCACTGCAAGTAAGATGATCTTTTAACTTGTGTCAACTTTTGATTGTTATTTTTAATACTATCATTTACGTTTCAGATATGGATGTTGTTTTGATTGGATAAAAAATCTATCTTTTTTTCAAGGAATAGTTTTTATTTGATTGTAACTGGTATATCTAGCATCTGACTTCAAGATCTCAGTTTTCTGTTATGGTGGATTTAGAATTCTTTCAAGGCAGATTGAGGAAAAACAGTAGTGTTTACAAGGTGGTCCATGCTAATTATTGTAGTAATGGAGGACAAAACAGTAGACCCATGTGTCTGGATGTGGAATGGTTAAGAAACTTGTATTTTTCATTTGAAGTGGCCATGTGAGTGAAGAAATAAAAAAGTGACATGTTCTGGACTTGGGACATGTTATAGGTCTCGCTGTTTATCTTGTTATCACCACCTTGTCTTGCCACACATTAAAAAGAAAGAAGAAAAAAAGTATAAGTGGAAATTGAAATGGTTCCACTTTATGATTTCTTTTTCTGTTCCTTTTTTATGTTACTTTCATGATGTGACATTGACCTGTTAATGAGCATTAATTAAGGGAATTCTTTGATGTCATTGTTAGGCATAAATAACTCTTCTTATTGGTCAAGAAAGAGTTTCTATTTTAACTTGGATTGTGTAACAGATATTTGATCTCTTAACCTTTTAATGTCTATTAGACTTGTTCAATGTATGGAGCTTCAACTAGTATATACTATGTATATTTTGTCAAACTGTTGTCTAGTTTTGTAGCACCACTTGGTTATTATGGTTTATGAGGCTGTCGGGTTGATTGTTGTCTTGACAAATAAGGAATACCATCACAAAGGTGTCTAGGTCGCATATCTAGATTTTGCTGTGACCAGAACTTAATGATTCTGATATCATATAGTTTTAAACGTAGGAGTTGGCATCTTTGCAAGTTTAAGTTACGATAATCTGAACCAAAAAGAATGTGAGGATGTGGGATCTTTGGTTGTTCTGGTCTGCAATCGTTCCAAAGAAATGTAGTTTGAAGGATGGCTCTAATGTCATATCCACAATTCAATATACTTGGACAGTTGGACTTGTATATAACAAATGTCTTCATGTACTATCTAAATGATGCATACAATGAGGTTCTATTTATGTGATGATAGCAAGATTTCATTTGAGTAATATTCCAAGGTATAGAAAAGCAAAACATGTTTTCTTCATAGGCAGCAGAAATGTCAGTTTGTTTTGTGGCTCTTAATTGATGCTTATCAGCATGAAACCAAGTTATCTTAATTGCTATACCTATCTAAATGTTGGTTTTCTTCTCAGGAACTTGACAGAGCTGGACATTCAGGAGAATGGCATGGATGATATTTCTGGTAGTTGGCTAAGTTGTTTTCCGGATGACTTTACATCACTGGAGGTGCTTAACTTTGCCAGTATGAACACTGAGATCAGTAAAGATGCTTT-AGAGAGACTTGTC</genome_strand>
        <mrna_strand>AAAGTGTCCACATTTTTCACCATTCTCAAGACTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-TTTTCTTGAGATGGAAATGAATCCGAGCTTGAAAAAACCGAGGGAATCTGTAGATTTATCGAACTCATCGGAGTTAACTCAGTCAGCATTCCCAGATGAGGTGTTGGAGAAGGTGTTGTCTCTTGTTCAGTCTCATAAAGATAGAAATTCAGCTTCACTGGTGTGCAAGGATTGGTATAATGCAGAGCGTTGGACAAGGACTAAGCTGTTTATTGGGAATTGCTATTCAGTTACTCCTGAGATTGTAGCAAGAAGATTCCCAAAGATTAAGAGTGTTACCCTTAAAGGGAAACCAAGATTTTCTGACTTTAATTTGGTACCAGAGAATTGGGGTGCTGATATTCAGGCTTGGCTTGATGTTTTTGCCAAAGTTTACCCCTTTCTTGAGGAGTTGAGATTGAAAAGAATGGCTGTTAGTGATGAGAGTTTGGAGTTTTTGGCAAAATCATTTCTTGGATTTAAGGCTCTCTCATTGTTGAGTTGTGATGGTTTTAGCACTGATGGGATCAGTAGCATTGCTGCTCACTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGACAGAGCTGGACATTCAGGAGAATGGCATGGATGATATTTGTGGTAGTTGGCTAAGTTGTTTTCCGGATGACTTCACATCACTGGAGGTGCTTAACTTTGCCTGTATGAACACTGAGATCAGTAAAGATGCTTTAAGAGAGACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570164" ref_strand="+" ref_description="SGN-E570164 [14705]">
      <seq>gtccacatttttcaccattctcaagactgagttttcttgagatggaaatgaatccgagcttgaaaaaaccgagggaatctgtagatttatcgaactcatcggagttaactcagtcagcattcccagatgaggtgttggagaaggtgttgtctcttgttcagtctcataaagatagaaattcagcttcactggtgtgcaaggattggtataatgcaggagcgttggacaaggactaagctgtttattgggaattgctattcagttactcctgagattgtagcaagaagattcccaaagattaagagtgttacccttaaagggaaaccaagattttctgactttaatttggtaccagagcaattggggtgctgatattcaggcttggcttgatgttttttggcaaaggtttacccctttcttgaggagttgaagattgaaaagaatggctgttagtgatgagaggtttggagtttttgggcacaaatcatttcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="73544" stop="75162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73844" g_stop="73874" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73875" i_stop="74404" i_length="530">
            <donor d_prob="0.812" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74405" g_stop="74862" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="496" r_length="465" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E570164" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73844" e_stop="73874"/>
          <exon e_start="74405" e_stop="74862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCACATTTTTCACCACTCTCAAGACTGAGGTATGAAATAAAAATAAGAAGAAGAAAAAAGCCAACAGCTTTTTCAATTCGTGTTCAAATCCAGTTTGTTTTTTTCTCTTACAACTCACGCTTTTCTTCCTGTTTTTCTTGTAATTGTTCTGAAATTTTACTGATTCTTTTCCTCTTTTTCTTTTGTTTTTTTCTGTGTGTTAGATTGATATAAGCATGGTTTTTTCTGGCCCATTTCTTTTATCTGCTTTTTTTCAGTAGCATTTCAGAAATTTCTCAGCCTTTTTTCTCTTTTAGAGTTTAGACCCATCTCTCTTGCTCTGTTTTCTTGAAGCTCTAAATTGGAGTAGAAGAACTGATTGCAGATGATGTTTTCTTTTTGAAATTCAGGTGACTCAAGATGGTTTTTGTTTTTGTTTTTTACAAATCTTGAAAGCTAGTTTTTCTATGTTTATTCAACTGAGGGGGTTAAAGCTGGAATCTTGCTGTTGAAAATTTTGTCAGCATGTTGAAAAATAGGATAAAGATTTGAACTTTGAGTTGTTTTGATTTCAGTTCAGTTTTTCTTGAGATGGAAATGAATCCGAGCTTGAAAAAACCGAGGGAATCTGTAGATTTATCGAAAATGTCGGAGTTATCTCAGTCAGCATTCCCAGATGAGGTGTTGGAGAAGGTGTTGTCTCTTGTTCAGTCTCATAAAGACAGAAATTCAGCTTCATTGGTGTGCAAAGATTGGTATAATGCA-GAGCGTTGGACAAGAACTAAGCTGTTTATTGGAAATTGCTATTCAGTTACTCCTGAGATTGTAGCAAGAAGATTTCCCAAGATTAAGAGTGTTACCCTTAAGGGGAAACCAAGATTTTCTGACTTTAATTTGGTACCTGAG-AATTGGGGTGCTGATATTCAGGCTTGGCTTGATG-TTTTTGCCAAA-GTTTACCCCTTTCTTGAGGAGTTG-AGATTGAAAAGAATGGCTGTTACTGATGAGA-GTTTGGAGTTTTT-GGCA-AAATCATTTCTTGGA</genome_strand>
        <mrna_strand>GTCCACATTTTTCACCATTCTCAAGACTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-TTTTCTTGAGATGGAAATGAATCCGAGCTTGAAAAAACCGAGGGAATCTGTAGATTTATCGAACTCATCGGAGTTAACTCAGTCAGCATTCCCAGATGAGGTGTTGGAGAAGGTGTTGTCTCTTGTTCAGTCTCATAAAGATAGAAATTCAGCTTCACTGGTGTGCAAGGATTGGTATAATGCAGGAGCGTTGGACAAGGACTAAGCTGTTTATTGGGAATTGCTATTCAGTTACTCCTGAGATTGTAGCAAGAAGATTCCCAAAGATTAAGAGTGTTACCCTTAAAGGGAAACCAAGATTTTCTGACTTTAATTTGGTACCAGAGCAATTGGGGTGCTGATATTCAGGCTTGGCTTGATGTTTTTTGGCAAAGGTTTACCCCTTTCTTGAGGAGTTGAAGATTGAAAAGAATGGCTGTTAGTGATGAGAGGTTTGGAGTTTTTGGGCACAAATCATTTCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570964" ref_strand="+" ref_description="SGN-E570964 [15631]">
      <seq>caggagaatggcatggatgatatttgtggtagttggctaagttgttttccggatgactttacatcactggaggtgcttaactttgcctgtatgaacactgagatcagtaaggatgctttagaagagacttgtcggtagatgcaaatcactgagggttctgaaggttaacaagaacgtcaccttgcctcagttgcaacgcctgctcgtccgagctcctcagctgatggagctgggtacaggatgctttcttccagatcaactcacaagtcggcagtatgcagaacttgaaagtgcattcagcaactgcaaacatctgcactctctttcaggcttttgggaagcaaatcgtcgatatttaccatctctttatgcagcctgtgctaggctgactttcctcaacttgagctatgaagcaattaggagtggtgaattttcgaagcttcttgctcattgcccaaatttaaggcgcctttgggtcctagacactgtcaaagataaggggttagaggctgttggaaccagctgcccattgcttgaagaattgcgagtctttcctgctgacccttttgaagaggatatggaccatggagtgactgagtcaggctttgtggctcgtgtctgctggttgttcctaagcttcaatatgttctctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="75970" stop="78028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76270" g_stop="76743" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76744" i_stop="77550" i_length="807">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77551" g_stop="77728" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="655" r_length="180" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E570964" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76270" e_stop="76743"/>
          <exon e_start="77551" e_stop="77728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGAATGGCATGGATGATATTTCTGGTAGTTGGCTAAGTTGTTTTCCGGATGACTTTACATCACTGGAGGTGCTTAACTTTGCCAGTATGAACACTGAGATCAGTAAAGATGCTTTAG-AGAGACTTGTCGGTAGATGCAAATCACTGAGGGTTCTGAAGGTGAACAAGAACGTCACCTTGCCTCAGTTACAACGCCTGCTCGTCCGGGCACCTCAGCTGATGGAGCTGGGTACAGGATGCTTTCTTCCAGATCAACTCACAAGTCGGCAGTATGAAGAACTTGAAAGTGCATTCAGCAACTGCAAACATCTGCACTCTCTTTCAGGTTTCTGGGAAGCAAATCGTCGATATTTACCATCTCTTTATGCAGCCTGTGCTAGTCTGACTTTCCTCAACTTGAGCTATGAAACCATTAGGAGTGGTGAACTTTCGAAGCTTCTTCTTCATTGCCCAAATTTAAGGCGCCTTTGGGTAAGAATCTTCCTCAGGCTTTAACATTAATGTGATAAATCCTTTCATGATAAGGTCTTAGGTATTGACCTCCTAACATTTGACATTTTGTCAAGGAACGACGCAATAGATCTTTAATTTTCCCATCTACATGTATGTGTGTGGTTATTCCCCAACACTTAAATTCTATTTCTTCATTAAAAAGTATATTTCCCACCTATGTTCTCCCTGAGGAACAAATAACATCTCTACGAGAGAGCATTGCACGTTTGTTCATAAAATTTGATATTTCCTTCATGAAGATATCCCGTACTAGTTTTGGGAAGAAGTTTGTGCATTACATCTTCCTCTATTGTTTGCCAAAAGAAGTTGGTTGAACTACTCTCAACTGGTATAGTTATTTAGGAGTGCATATACATTCCTGTTTGGGATGAAGGTTAGCTTGAGCCTCACATTAGTGCCTGATCAGGACTATCTGCATGCTTTTAAGCGGATATATAACCTGTTCATCACTTGAGTAATAAGAGAGAGGAGGTACCATATTCACCATAATCTGTATGGTGAACTCCTCGGAATAGAATACAGAAGGAAAAGGTGGAGGGAAAAAGGGAGTTTCCAGTTGTATTCGTTAACAAAGATAATTTCCATTCCAGCACCATGTAAAATCAACTTCGTTGTCAACTGAAAGTACCACTAATGTCTTTTAAGTTTAAACTGCTCTGGGGTTTTTTTCTCTAGGGGATAAGTATTCAAGTGATGCTAATCACCTTTTTCTTTTTAATCCATTTCTTACTTTCAAGGTCTTCATGCCTAATCTTTCTGTTATAGGTCTTAGACACTGTCAATGATAAGGGGTTAGAGGCTGTTGGAACCAGCTGCCCATTGCTTGAAGAACTGCGAGTCTTTCCTGCTGACCCTTTTGAAGAGGATATGGACCATGGAGTGACGGAGTCAGGCTTTATAGCT-GTGTCTGCTGGTTG-TCCTAAGCTTCAATATGTTCTCTATT</genome_strand>
        <mrna_strand>CAGGAGAATGGCATGGATGATATTTGTGGTAGTTGGCTAAGTTGTTTTCCGGATGACTTTACATCACTGGAGGTGCTTAACTTTGCCTGTATGAACACTGAGATCAGTAAGGATGCTTTAGAAGAGACTTGTCGGTAGATGCAAATCACTGAGGGTTCTGAAGGTTAACAAGAACGTCACCTTGCCTCAGTTGCAACGCCTGCTCGTCCGAGCTCCTCAGCTGATGGAGCTGGGTACAGGATGCTTTCTTCCAGATCAACTCACAAGTCGGCAGTATGCAGAACTTGAAAGTGCATTCAGCAACTGCAAACATCTGCACTCTCTTTCAGGCTTTTGGGAAGCAAATCGTCGATATTTACCATCTCTTTATGCAGCCTGTGCTAGGCTGACTTTCCTCAACTTGAGCTATGAAGCAATTAGGAGTGGTGAATTTTCGAAGCTTCTTGCTCATTGCCCAAATTTAAGGCGCCTTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTAGACACTGTCAAAGATAAGGGGTTAGAGGCTGTTGGAACCAGCTGCCCATTGCTTGAAGAATTGCGAGTCTTTCCTGCTGACCCTTTTGAAGAGGATATGGACCATGGAGTGACTGAGTCAGGCTTTGTGGCTCGTGTCTGCTGGTTGTTCCTAAGCTTCAATATGTTCTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341048" ref_strand="+" ref_description="SGN-E341048 [cTOE-22-G1]">
      <seq>cataactgccccaatttcacccattttcgtctctgtataatgagccctggccagccagattacttgacaaatgaacccatggatgaggcatttggtgcagtggtcaagacttgtaaaaagctccagaggctttctgtttctggacggttgactgacctgacctttgagtatattgggaagtatgccaaaaaccttgagacactttcagttgctttttctggcggcactgactggggtatgcagtgcgtgctcgacggctgttctaagctgaggaagctggagataagggattctccatttggaaatgcagcacttctttctggaatggggaagtatgaatcaatgcggtgtctttggatgtcagcttgcagggtcaccatgaatggttgtagaatacttgcacgagagagacctangttgaatgtcgaggtaatcaaagatgagcacagcgatgactatgctgataaattatacgtctatcgttctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="77470" stop="78557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77770" g_stop="78257" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E341048" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77770" e_stop="78257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAACTGCCCCAATTTCACCCATTTTCGTCTCTGTATAATGAGCCCTGGCCAGCCAGATTACTTGACAAATGAACCCATGGATGAGGCATTTGGTGCAGTGGTCAAGACTTGTAAAAAGCTCCAGAGGCTTTCTGTTTCTGGACGGTTGACTGACCTGACCTTTGAGTATATTGGGAAGTATGCCAAAAACCTTGAGACACTTTCAGTTGCTTTTTCTGGCGGCACTGACTGGGGTATGCAGTGCGTGCTCGACGGCTGTTCTAAGCTGAGGAAGCTGGAGATAAGGGATTCTCCATTTGGAAATGCAGCACTTCTTTCTGGAATGGGGAAGTATGAATCAATGCGGTGTCTTTGGATGTCAGCTTGCAGGGTCACCATGAATGGTTGTAGAATACTTGCACGAGAGAGACCTAGGTTGAATGTCGAGGTAATCAAAGATGAGCACAGCGATGACTATGCTGATAAATTATACGTCTATCGTTCTGT</genome_strand>
        <mrna_strand>CATAACTGCCCCAATTTCACCCATTTTCGTCTCTGTATAATGAGCCCTGGCCAGCCAGATTACTTGACAAATGAACCCATGGATGAGGCATTTGGTGCAGTGGTCAAGACTTGTAAAAAGCTCCAGAGGCTTTCTGTTTCTGGACGGTTGACTGACCTGACCTTTGAGTATATTGGGAAGTATGCCAAAAACCTTGAGACACTTTCAGTTGCTTTTTCTGGCGGCACTGACTGGGGTATGCAGTGCGTGCTCGACGGCTGTTCTAAGCTGAGGAAGCTGGAGATAAGGGATTCTCCATTTGGAAATGCAGCACTTCTTTCTGGAATGGGGAAGTATGAATCAATGCGGTGTCTTTGGATGTCAGCTTGCAGGGTCACCATGAATGGTTGTAGAATACTTGCACGAGAGAGACCTANGTTGAATGTCGAGGTAATCAAAGATGAGCACAGCGATGACTATGCTGATAAATTATACGTCTATCGTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454735" ref_strand="+" ref_description="SGN-E454735 [cSTS-24-O21]">
      <seq>cctcgtgccgcaaaatctctaactaattcgccggaatcttcacttttccgaccccatctcgccggagaatggaattcaggcaagtccaatgaaaagcgacatgtttactctaccggaaaatgcagaaaatccagttgggtcatccgccggaaaatcaagaatccggcgagttattgagttcatttcttcacttatatctctttcttattcaatcaaagttttccctgtgaaatggcaatcgatacgaaacaagcttgaagagcttctttcgagtttatctgccattgagaattgtgattccacagaaaactaccctccactctgcagctcccttcaggccattacagctaccctcaagaactgccatgaactttctcggcattgtgttgagttttcttatagtgggaaactgctgatgcagagtgatcttgatatagtttctacaaaattagacaatcatataaggagtatttctgagatttactctcttggtttgcttactcaaagctctgccattattgttccaaagcccaatcttggagcttctcgtgatgatatcaagttctatattagggatttgttgtcaagggtcaagattgggtcttcagagatgaagaaacaagggttgattgctttgaatgaaattattcaagaagatgataggtatgttaaagttgcaattgaaattgataatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="87200" stop="88489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87495" g_stop="88189" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E454735" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87495" e_stop="88189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCATCCCAAATCTCTATCTAATTCGCCGGAATCTTCACTTCTCCGACCACATCTCGCCGGAGAATGGAATTCAGGGAAGACGAATGAAATCCATCATGTCTACTCTACCGGAAAATGCAGAAAATCCAGTTGGGTCATCCGCCGGAAAATCAAGAATCCGGCGAGTTAATGAGTTCATTTCTTCACTTATATCTCTTTCGTATTCAATCAAAGTTTTCCCTGTGAAATGGCAATCGATACGAAGCAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCTATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACC</genome_strand>
        <mrna_strand>CCTCGTGCCGCAAAATCTCTAACTAATTCGCCGGAATCTTCACTTTTCCGACCCCATCTCGCCGGAGAATGGAATTCAGGCAAGTCCAATGAAAAGCGACATGTTTACTCTACCGGAAAATGCAGAAAATCCAGTTGGGTCATCCGCCGGAAAATCAAGAATCCGGCGAGTTATTGAGTTCATTTCTTCACTTATATCTCTTTCTTATTCAATCAAAGTTTTCCCTGTGAAATGGCAATCGATACGAAACAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCCATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAACTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAGGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTCTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467544" ref_strand="+" ref_description="SGN-E467544 [cSTB-49-E14]">
      <seq>ctctaactaattcgccggaatcttcacttttccgaccccatctcgccggagaatggaattcaggcaagtccaatgaaaagcgacatgtttactctaccggaaaatgcagaaaatccagttgggtcatccgccggaaaatcaagaatccggcgagttattgagttcatttcttcacttatatctctttcttattcaatcaaagttttccctgtgaaatggcaatcgatacgaaacaagcttgaagagcttctttcgagtttatctgccattgagaattgtgattccacagaaaactaccctccactctgcagctcccttcaggccattacagctaccctcaagaactgccatgaactttctcggcattgtgttgagttttcttatagtgggaaactgctgatgcagagtgatcttgatatagtttctacaaaattagacaatcatataaggagtatttctgagatttactctcttggtttgcttactcaaagctctgccattattgttccaaagcccaatcttggagcttctcgtgatgatatcaagttctatattagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="87211" stop="88371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87511" g_stop="88071" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E467544" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87511" e_stop="88071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATCTAATTCGCCGGAATCTTCACTTCTCCGACCACATCTCGCCGGAGAATGGAATTCAGGGAAGACGAATGAAATCCATCATGTCTACTCTACCGGAAAATGCAGAAAATCCAGTTGGGTCATCCGCCGGAAAATCAAGAATCCGGCGAGTTAATGAGTTCATTTCTTCACTTATATCTCTTTCGTATTCAATCAAAGTTTTCCCTGTGAAATGGCAATCGATACGAAGCAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCTATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGAT</genome_strand>
        <mrna_strand>CTCTAACTAATTCGCCGGAATCTTCACTTTTCCGACCCCATCTCGCCGGAGAATGGAATTCAGGCAAGTCCAATGAAAAGCGACATGTTTACTCTACCGGAAAATGCAGAAAATCCAGTTGGGTCATCCGCCGGAAAATCAAGAATCCGGCGAGTTATTGAGTTCATTTCTTCACTTATATCTCTTTCTTATTCAATCAAAGTTTTCCCTGTGAAATGGCAATCGATACGAAACAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCCATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAACTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAGGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTCTATATTAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211082" ref_strand="+" ref_description="SGN-E211082 [cLEC-69-D19]">
      <seq>gaaatggcaatcgatacgaagcaagcttgaagagcttctttcgagtttatctgctattgagaattgtgattccacagaaaactaccctccactctgcagctcccttcaggccattacagctaccctcaagaattgccatgaactttctcggcattgtgttgagttttcttatagtgggaaactgctgatgcagagtgatcttgatatagtttctacaaaattagacaatcatataaagagtatttctgagatttactctcttggtttgcttactcaaagctctgccattattgttccaaagcccaatcttggagcttctcgtgatgatatcaagttttatattagggatttgttgtcaagggtcaagattgggtcttcagagatgaagaaacaagggttgattgctttgaatgaaattattcaagaagatgataggtatgttaaagttgcaattgaaattgataaccttgtttctgtgttagtgagttttcttgatttgcaagaagataatcttcaagaagaagcagctaaggcattatctgtaatagcagggtttcaatcttttagaagttgtttgatttctgctggaataatttcccctttgattagagttttggagtgtgggattgggttgagtnaagaattgccaccaggtgtttgcaaaagctcacagagaactcagataatgcatgggtcatttcagctcatggtggggttactgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="87423" stop="88749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87723" g_stop="88449" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E211082" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87723" e_stop="88449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGGCAATCGATACGAAGCAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCTATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTTAGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAAGCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATTTCTGCTGGAATAATTTCCCCTTTGATTAGAGTTTTGGAGTGTGGGATTGGGTTGAGTAAAGAATTTGCCACCAGGTGTTTGCAAAAGCTCACAGAGAACTCAGATAATGCATGGTCAATTTCAGCTCATGGTGGGGTTACTGTTTTG</genome_strand>
        <mrna_strand>GAAATGGCAATCGATACGAAGCAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCTATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTTAGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAAGCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATTTCTGCTGGAATAATTTCCCCTTTGATTAGAGTTTTGGAGTGTGGGATTGGGTTGAGTNAAGAA-TTGCCACCAGGTGTTTGCAAAAGCTCACAGAGAACTCAGATAATGCATGGGTCATTTCAGCTCATGGTGGGGTTACTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324378" ref_strand="+" ref_description="SGN-E324378 [cTOC-6-L17]">
      <seq>acagctaccctcaagaattgccatgaactttctcggcattgtgttgagttttcttatggtgggaaactgctgatgcagagtgatcttgatatagtttctacaaaattagacaatcatataaagagtatttctgagatttactctcttggtttgcttactcaaagctctgccattattgttccaaagcccaatcttggagcttctcgtgatgatatcaagttttatattagggatttgttgtcaagggtcaagattgggtcttcagagatgaagaaacaagggttgattgctttgaatgaaattattcaagaagatgataggtatgttaaagttgcaattgaaattgataaccttgtttctgtgttagtgagttttcttgatttgcaagaagataatcttcaagaagaagcagctaaggcattatctgtaatagcagggtttcaatcttttagaagttgtttgatttctgctggaataatttcccctttgattagagttttggagtgtgggattgggttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="87538" stop="88657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87838" g_stop="88357" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E324378" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87838" e_stop="88357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTTAGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAAGCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATTTCTGCTGGAATAATTTCCCCTTTGATTAGAGTTTTGGAGTGTGGGATTGGGTTGA</genome_strand>
        <mrna_strand>ACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATGGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTTAGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAAGCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATTTCTGCTGGAATAATTTCCCCTTTGATTAGAGTTTTGGAGTGTGGGATTGGGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403390" ref_strand="+" ref_description="SGN-E403390 [PPC-10-B7]">
      <seq>actaatgggggatgctggatttatgcctgagttagtgaagtttcttgattcaaagtcatttgaggttagagaaatggcagctgaaacactatcaagtatggtgattgtaccaagaaaccaaaagagatttggacagaatgatgaaaatgttggtttgctgctgcaaatgcttgatccagaacaggcaaattttggcaacaaaaatctgttgctttctatactcatgtcattaacaagttgcaatagtgccagaaagaaaattgcaaactcagggtatctgataaacattgagaagttagctgaggctgaagtatcagatgcaaaaaagattgtcagaaaattgtcttcaaatagattcagaagcattctcagtggaatctggcattcataatcaatgtaattcaattttgtcttatgcttaaatattttaccaaaaccaaaaaacagaaaggagatcttatgtaatataatccaagataaatgtactttattgttaagaaagagcttttagaacatccccttttgccctttttagcttctagtcatataataaaaaaaaagattactgaatattacacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="88624" stop="89824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88923" g_stop="89454" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="549" polyA_stop="560"/>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E403390" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88923" e_stop="89454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATGGGGGATGCTGGATTTATGCCTGAGTTGGTGAAGTTTCTAGATTCAAAGTCATATGAGGTTAGAGAAATGGCAGCTGAAACACTATCAAGTATGGTGATTGTACCAAGAAACCAAAAGAGATTTGGACAGAATGATCAAAATGTTGGTTTGCTGCTGCAAATGCTTGATCCAGAAGAGGCAAATTTTGGCAACAAAAAGCTGTTGCTTTCTATACTCATGTCATTAACAAGCTGCAATAGTGCCAGAAAGAAAATTGCAAACTCAGGGTATCTGATAAACATTGAAAAGTTAGCTGAGGCTGAAGTTTCAGATGCAAAAAAGATAGTCAGAAAATTGTCTTCCAATAGATTCAGAAGCATTCTCAGTGGAATCTGGCATTCATAATCAATGTAATTCAATTTTGTCTTATGCTTAACTA-TTTACCAAAACCAAAAATCAGAAAGGAGATCTTATGTAATATAAACCAAGATAAATGTATTTTATTGTTAAGAAAGAACTTTTAGAACATCCCCTTTTGCCTTTTTA</genome_strand>
        <mrna_strand>ACTAATGGGGGATGCTGGATTTATGCCTGAGTTAGTGAAGTTTCTTGATTCAAAGTCATTTGAGGTTAGAGAAATGGCAGCTGAAACACTATCAAGTATGGTGATTGTACCAAGAAACCAAAAGAGATTTGGACAGAATGATGAAAATGTTGGTTTGCTGCTGCAAATGCTTGATCCAGAACAGGCAAATTTTGGCAACAAAAATCTGTTGCTTTCTATACTCATGTCATTAACAAGTTGCAATAGTGCCAGAAAGAAAATTGCAAACTCAGGGTATCTGATAAACATTGAGAAGTTAGCTGAGGCTGAAGTATCAGATGCAAAAAAGATTGTCAGAAAATTGTCTTCAAATAGATTCAGAAGCATTCTCAGTGGAATCTGGCATTCATAATCAATGTAATTCAATTTTGTCTTATGCTTAAATATTTTACCAAAACCAAAAAACAGAAAGGAGATCTTATGTAATATAATCCAAGATAAATGTACTTTATTGTTAAGAAAGAGCTTTTAGAACATCCCCTTTTGCCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433326" ref_strand="+" ref_description="SGN-E433326 [STM-58-G8]">
      <seq>actaatgggggatgctggatttatgcctgagttagtgaagtttcttgattcaaagtcatttgaggttagagaaatggcagctgaaacactatcaagtatggtgattgtaccaagaaaccaaaagagatttggacagaatgatgaaaatgttggtttgctgctgcaaatgcttgatccagaacaggcaaattttggcaacaaaaatctgttgctttctatactcatgtcattaacaagttgcaatagtgccagaaagaaaattgcaaactcagggtatctgataaacattgagaagttagctgaggctgaagtatcagatgcaaaaaagattgtcagaaaattgtcttcaaatagattcagaagcattctcagtggaatctggcattcataatcaatgtaattcaattttgtcttatgcttaaatattttaccaaaaccaaaaaacagaaaggagatcttatgtaatataatccaagataaatgtactttattgttaagaaagagcttttagaacatccccttttgccctttttagcttctagtcntataataaaaaaaaagattactgaatattacacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="88624" stop="89824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88923" g_stop="89454" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="562"/>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E433326" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88923" e_stop="89454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATGGGGGATGCTGGATTTATGCCTGAGTTGGTGAAGTTTCTAGATTCAAAGTCATATGAGGTTAGAGAAATGGCAGCTGAAACACTATCAAGTATGGTGATTGTACCAAGAAACCAAAAGAGATTTGGACAGAATGATCAAAATGTTGGTTTGCTGCTGCAAATGCTTGATCCAGAAGAGGCAAATTTTGGCAACAAAAAGCTGTTGCTTTCTATACTCATGTCATTAACAAGCTGCAATAGTGCCAGAAAGAAAATTGCAAACTCAGGGTATCTGATAAACATTGAAAAGTTAGCTGAGGCTGAAGTTTCAGATGCAAAAAAGATAGTCAGAAAATTGTCTTCCAATAGATTCAGAAGCATTCTCAGTGGAATCTGGCATTCATAATCAATGTAATTCAATTTTGTCTTATGCTTAACTA-TTTACCAAAACCAAAAATCAGAAAGGAGATCTTATGTAATATAAACCAAGATAAATGTATTTTATTGTTAAGAAAGAACTTTTAGAACATCCCCTTTTGCCTTTTTA</genome_strand>
        <mrna_strand>ACTAATGGGGGATGCTGGATTTATGCCTGAGTTAGTGAAGTTTCTTGATTCAAAGTCATTTGAGGTTAGAGAAATGGCAGCTGAAACACTATCAAGTATGGTGATTGTACCAAGAAACCAAAAGAGATTTGGACAGAATGATGAAAATGTTGGTTTGCTGCTGCAAATGCTTGATCCAGAACAGGCAAATTTTGGCAACAAAAATCTGTTGCTTTCTATACTCATGTCATTAACAAGTTGCAATAGTGCCAGAAAGAAAATTGCAAACTCAGGGTATCTGATAAACATTGAGAAGTTAGCTGAGGCTGAAGTATCAGATGCAAAAAAGATTGTCAGAAAATTGTCTTCAAATAGATTCAGAAGCATTCTCAGTGGAATCTGGCATTCATAATCAATGTAATTCAATTTTGTCTTATGCTTAAATATTTTACCAAAACCAAAAAACAGAAAGGAGATCTTATGTAATATAATCCAAGATAAATGTACTTTATTGTTAAGAAAGAGCTTTTAGAACATCCCCTTTTGCCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712311" ref_strand="+" ref_description="SGN-E712311 [FB04CA04]">
      <seq>ctccaccgcaacagaactatggctcacgacagtatgctccgccacctcaacagaactacagacaaccacaggatctttctccacagcagaattatgagcggccacagaatcctcagccaaaccagagttacggtgtacctcagagtgttccttctcagtggaatcatggccttcagccaaaatttgtacctcaacagatctatgggcctcaaggggctggggatcataggggtcctgcacctcctgatagcaacctagatgcgtgggataattcccaggttggatggggtgattcaatacgttcaccttttcctcgaagagaccagagaggtggtgcacctccagagcaaggaggctttggaggagttcaacattatgggtctcaacaaggtggaagttctgaacaacaaacctttggagatcaaccactgagatatgggccccagtttgggcagaacaatccaaggccaggaggaaatcagaatttcccaccgatagagcagcagggcaacatgcaagggggggagcagaggacttatgcatctagtggtacaatgggaacagatcaagagagatactaaagatatggtgcagtatcatgacgtactgagaaaggattgttaattagcttttgactagctaaaggtgatggttcttgtctgaataattgagaaatgatcatgatcacatcctctagtctcaacaattaccaagaaacttgggctgaagaatgttgtggtaaatagttttccaatgtcttaatatggttatggaaatggggttttgtgaatgataacatggagagacttaggtgtaaaacaagcctcttgtatctgttttcttttgtgcaaggaagaaagtttctattgacnaaaaaaaaacaaaaataaaaaacttggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="93455" stop="31352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93155" g_stop="92587" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92586" i_stop="91373" i_length="1214">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91372" g_stop="91074" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="868" r_length="299" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91073" i_stop="89471" i_length="1603">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89470" g_stop="89433" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="869" r_stop="906" r_length="38" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E712311" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93155" e_stop="92587"/>
          <exon e_start="91372" e_stop="91074"/>
          <exon e_start="89470" e_stop="89433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCACCGCAACAGAACTATGGCTCACGACAGTATGCTCCGCCACCTCAACAGAACTACAGACAACCACAGGATCTTTCTCCACAGCAGAATTATGAGCGGCCACAGAATCCTCAGCCAAACCAGAGTTACGGTGTACCTCAGAGTGTTCCTTCTCAGTGGAATCATGGCCTTCAGCCAAAATTTGTACCTCAACAGATCTATGGGCCTCAAGGGGCTGGGGATCATAGGGGTCCTGCACCTCCTGATAGCAACCTAGATGCGTGGGATAATTCCCAGGTTGGATGGGGTGATTCAATACGTTCACCTTTTCCTCGAAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAACCACTGAGATATGGGCCCCAGTTTGGGCAGAACAATCCAAGGCCAGGAGGAAATCAGAATTTCCCACCGATAGAGCAGCAGGGCAACATGCAAGGGGGGGAGCAGAGGACTTATGCATCTAGTGGTACAATGGGAACAGATCAAGTAAGCTGTTGCTTCCCTAACCCTCTTATGCGTTGTTTTACTGTTTATTTCTCTGTGAATGACATGATATGATGTATTTGTATTTAAGAGGGAGATAACTTGGAATATCCTCCCTCCAATTGTCTGTTTTCAACCATTACAACCTTTTAACTATGTGTGTCCTATAACTTTAAGTTGCTCGGAATTGGTTTTGGGTGTCCGATAGGGTGTCGATTTAGAAACAAATTTCTTTAAAGCGGACAACTTTTTTTTTTTGTGTGTGGAGGGGTGATTTTTATGTATATTTCCTATTTAAAATAACCAGAAAAGGTAATATCTATTATTTTATGAGTGGTTCGTGCACCACTTTCTCAGCTATTGTGGTTTTTGTCTTGTAAGGAGGTTAAAGAGCATTGTGGACAAGAGGGATTTAATAGGAACCCTACATAGTTGAGGTTCTAATGGGCGAAAACAGACTACTTTGGGGGTGGCGGCGGCGGGGATTTATGTATTTTCCCTGTTTAAAACCACCAAACAAGGTAATGTCTGTCAGATTCTTTAAAGGTTGATCAGAAAACAATGAGTTCCCAAACCAAAAAACTATTTTGCTGGTTCTCTATTATAGTAATGTCAACCATTTGAAAATTCAAATTTGAGTTACTAAAGACATTCAGAAGACAAAGTATTAATGATATTTATGTATGAAAGACTCAGTTTCAAAAAAAAAGAGAAGAGAATGATATATGTCTGAAAGACATATTCTATCCATAGATACAACAACTTAGATTGCTGATTCCTTTTTAGTTGTTAAAAAAAGTTGTTTCGCGTTTTCTCTTGCCAATATACTGATCTAGTAGTTTGACCAGCCAAAAGTTTGTCGTAGCATCAAAGTTATTCATTTTAGAGCACTTCTGTACATTCAATGGTTCTAGCTTTTTGAACTGGAATTTAATTAGGCTAACCCGGAAGGAAGGGGTCATACAAATTTTCTTGATCAAAAAATAAAAATCAAAACTACAGCACCAAAGTGATTGGCCATACACCCTAGAATTCTCTATTGGAATTTTTTTATTAGTAGAGATTTTTAAAATTGTTGGAATGCTCTTTTCTATATTCTGTAACAACTTGGTGACAGAAATACAATGCTTTCAATAACAACCTCTGCAGTTTATTCAAATGAGTCAACTTGCTATCTCTCCATTTGTTCAACACTTATTCTCTGTTAACGTCTGCAGGAGAGATACTAAAGATATGGTGCAGTATCATGACGTACTGAGAAAGGATTGTTAATTAGCTTTTGACTAGCTAAAGGTGATGGTTCTTGTCTGAATAATTGAGAAATGATCATGATCACATCCTCTAGTCTCAACAATTACCAAGAAACTTGGGCTGAAGAATGTTGTGGTAAATAGTTTTCCAATGTCTTAATATGGTTATGGAAATGGTGTTTTGTGAATGATAACATGGAGAGACTTAGGTGTAAAACAAGCCTCTTGTATCTGTTTCTTTTTGTGCAAGGAAGAAGGTTTCTAATGCATTTGCTTAATTATTTGTTGTCTTAGCTAAGTTTGCAGCTGGAATGAAAAGGTAATAGAACACATTTAATTTTTATTGGTTCAAAAACTGATCAAATTGGGTATTTTGATAATGAGATTGAAGGCTCACCTAGTTGGGCATGAGTTGAAGAGAAAGAAAGACCATTGAGCTAAGGCAGGTTCAAACTAAAGAAAGGCCTTGATTTTGGGCTAGAAATATTTTGCTGTTTTCTCTGTTCTCTTTTGTTGTTTTGACTACTCTTTTTTTTATAAAATACCAATTGACAGAATTCAGAATTTCACAGTGCTCAGTGTGGACCTTGTGGTCCAACTTGTCTCTGTCTGGATTGTTAACTCTTACTCATATTTGGTTATGTTGATGACATAAAGCCCAATTTTAAAAACCTGGCATTTTGTGGTCCAATATTTCTTCATAAGAAATCATGTTTTTTCAAGTACAAACATACTATCTTCCCCTGCAAATTGCAATAAGCCCACCTACCCTGAGGGGGTGTAAGAGAAAAAAGGTACACATAATAAATGGATATAACACATATCATGGATCTTGGGTAAATCTTGAGACTACTTTTTAGGTATCAAAGCATTCTTAGGATTTATTAGACCATTTACATTTATAACTGAGTTCTTCAAGGTTGTGTACTTTTTAGCTGTTTCATGTTCATAATGATGCATTATTCTCCATGGTTGTATGTTGGTCACTTGATCTCTCCATCTACTCTTGAAGTGTACTGAATTGAATACAAGCTAAGTTATTGGGTACTAAGTAGTGAGGCCATGATTGACAGTGGCAACCAACCATAGACTTGCAGCTACATGGAAAATGTAATATTTGAGAGTTAAAGACGAGTTTCATTTATATTTTACTTGACATTGTAAAATTAAAAAATATTTACATGATCAGATAACATAAGACCCTATCTGCATATAATATTTGTTCCTGAATATAAGTTGATAAACTAAAATTATACTAGATATGTTAAAGTGGATCCTAGTACGTTTTAAGGGGTCATTTAGTTTGGTGAACAAGTTAAACTGAGATTAGATTGGGACAAACTTTTATCTCTAATTCTGAAATCAAAAGTTCAACCAAAAGTGGGATAGAATAATCTCATATATTACTTCAATATTGTTAAATTATGTGTGTTTATAAAAGTCATAGTGGTCCTTAACTCATTTGTAAGGCTTTAATTCTTTACAATATCTACACAATTGATCACATCTACTTGGTATAGCCATCAAAAGTTTCTTCCAAACAATTTTTCTGACCCTTAAAATCACATTGGATAAAAAGTGTCAAAGAGAAGTCCTCCACATAAGACATATGAGTTCATTTAATATAAAACCAATGCAATAAGAAGAGGACAAGAAAACACAGAGAGGGCCATATTCATCCATCACTTTCTACTCTGAGCTCCTTGGAAGACTAAGACAAAAACATCAATTGCCCATCTCTAAACTCATGCCTTCACCCATGTGCATCTTAGTATCACAAAACAAAATGATAATACATTTGAAAAGATAAGAATAAGATGTTTATATTCAGTAAATCTTTTTTTTTATTGAGGCTGTTTATATGACTAGAAGCTAAAAAAAAGGCTAAAAAGGCAAAAGGGGATGTT</genome_strand>
        <mrna_strand>CTCCACCGCAACAGAACTATGGCTCACGACAGTATGCTCCGCCACCTCAACAGAACTACAGACAACCACAGGATCTTTCTCCACAGCAGAATTATGAGCGGCCACAGAATCCTCAGCCAAACCAGAGTTACGGTGTACCTCAGAGTGTTCCTTCTCAGTGGAATCATGGCCTTCAGCCAAAATTTGTACCTCAACAGATCTATGGGCCTCAAGGGGCTGGGGATCATAGGGGTCCTGCACCTCCTGATAGCAACCTAGATGCGTGGGATAATTCCCAGGTTGGATGGGGTGATTCAATACGTTCACCTTTTCCTCGAAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAACCACTGAGATATGGGCCCCAGTTTGGGCAGAACAATCCAAGGCCAGGAGGAAATCAGAATTTCCCACCGATAGAGCAGCAGGGCAACATGCAAGGGGGGGAGCAGAGGACTTATGCATCTAGTGGTACAATGGGAACAGATCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGATACTAAAGATATGGTGCAGTATCATGACGTACTGAGAAAGGATTGTTAATTAGCTTTTGACTAGCTAAAGGTGATGGTTCTTGTCTGAATAATTGAGAAATGATCATGATCACATCCTCTAGTCTCAACAATTACCAAGAAACTTGGGCTGAAGAATGTTGTGGTAAATAGTTTTCCAATGTCTTAATATGGTTATGGAAATGGGGTTTTGTGAATGATAACATGGAGAGACTTAGGTGTAAAACAAGCCTCTTGTATCTGTTTTCTTTTGTGCAAGGAAGAAAGTTTCTATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACNAAAAAAAAACAAAAATAAAAAACTTGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428890" ref_strand="-" ref_description="SGN-E428890 [STM-51-G23]">
      <seq>aagagaccagagaggtggtgcacttccagagcaaggaggcttcggaggagttcaacattatggctctcaacaaggtggaagttctggacaacaaacctttggaggtcaaccactgagatatggccccacatttgggcagaacaatccaaggccaggaggaaatcagaatttcccaccgatggagcagcagggcaacatgcaagggggggagcagaggacttatgaatctagtggtacaatgggaacggatcaagagagatactgaagatatggcgcagtatcatgacgtactgagaaatgatttgtcaattagcttttgactagctaaaggtgatggttattgtctgaataattgagaaatgatcacgatcacttcctcaacaatcaccaagaaacttggactgagaaaatattgttgtggtaaatagtttatcgatgtcttagtatggttatggaaatggtgctttgtgaatgataacatggagagactcaggtgtaaaacaagcatccggtatatgtttctttttgtgtaaggaagaaggtttgtaatgcctttgcttaattttgttatcttagctaagttagcagctggaattgcaagaaaatgtaataaaacatatctaagttttattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="93139" stop="90722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92839" g_stop="92587" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92586" i_stop="91373" i_length="1214">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91372" g_stop="91021" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="601" r_length="348" r_score="0.869"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="651"/>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E428890" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428890" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92839" e_stop="92587"/>
          <exon e_start="91372" e_stop="91021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAACCACTGAGATATGGGCCCCAGTTTGGGCAGAACAATCCAAGGCCAGGAGGAAATCAGAATTTCCCACCGATAGAGCAGCAGGGCAACATGCAAGGGGGGGAGCAGAGGACTTATGCATCTAGTGGTACAATGGGAACAGATCAAGTAAGCTGTTGCTTCCCTAACCCTCTTATGCGTTGTTTTACTGTTTATTTCTCTGTGAATGACATGATATGATGTATTTGTATTTAAGAGGGAGATAACTTGGAATATCCTCCCTCCAATTGTCTGTTTTCAACCATTACAACCTTTTAACTATGTGTGTCCTATAACTTTAAGTTGCTCGGAATTGGTTTTGGGTGTCCGATAGGGTGTCGATTTAGAAACAAATTTCTTTAAAGCGGACAACTTTTTTTTTTTGTGTGTGGAGGGGTGATTTTTATGTATATTTCCTATTTAAAATAACCAGAAAAGGTAATATCTATTATTTTATGAGTGGTTCGTGCACCACTTTCTCAGCTATTGTGGTTTTTGTCTTGTAAGGAGGTTAAAGAGCATTGTGGACAAGAGGGATTTAATAGGAACCCTACATAGTTGAGGTTCTAATGGGCGAAAACAGACTACTTTGGGGGTGGCGGCGGCGGGGATTTATGTATTTTCCCTGTTTAAAACCACCAAACAAGGTAATGTCTGTCAGATTCTTTAAAGGTTGATCAGAAAACAATGAGTTCCCAAACCAAAAAACTATTTTGCTGGTTCTCTATTATAGTAATGTCAACCATTTGAAAATTCAAATTTGAGTTACTAAAGACATTCAGAAGACAAAGTATTAATGATATTTATGTATGAAAGACTCAGTTTCAAAAAAAAAGAGAAGAGAATGATATATGTCTGAAAGACATATTCTATCCATAGATACAACAACTTAGATTGCTGATTCCTTTTTAGTTGTTAAAAAAAGTTGTTTCGCGTTTTCTCTTGCCAATATACTGATCTAGTAGTTTGACCAGCCAAAAGTTTGTCGTAGCATCAAAGTTATTCATTTTAGAGCACTTCTGTACATTCAATGGTTCTAGCTTTTTGAACTGGAATTTAATTAGGCTAACCCGGAAGGAAGGGGTCATACAAATTTTCTTGATCAAAAAATAAAAATCAAAACTACAGCACCAAAGTGATTGGCCATACACCCTAGAATTCTCTATTGGAATTTTTTTATTAGTAGAGATTTTTAAAATTGTTGGAATGCTCTTTTCTATATTCTGTAACAACTTGGTGACAGAAATACAATGCTTTCAATAACAACCTCTGCAGTTTATTCAAATGAGTCAACTTGCTATCTCTCCATTTGTTCAACACTTATTCTCTGTTAACGTCTGCAGGAGAGATACTAAAGATATGGTGCAGTATCATGACGTACTGAGAAAGGA-TTGTTAATTAGCTTTTGACTAGCTAAAGGTGATGGTTCTTGTCTGAATAATTGAGAAATGATCATGATCACATCCTCTAGTCTCAACAATTACCAAGAAACTTGGGCT--GAAGA-A-TGTTGTGGTAAATAGTTTTCCAATGTCTTAATATGGTTATGGAAATGGTGTTTTGTGAATGATAACATGGAGAGACTTAGGTGTAAAACAAGCCTCTTGTATCTGTTTCTTTTTGTGCAAGGAAGAAGGTTTCTAATGCATTTGCTTAATTATTTGTTGTCTTAGCTAAGTTTGCAGCTGGAATGAAAAG</genome_strand>
        <mrna_strand>AAGAGACCAGAGAGGTGGTGCACTTCCAGAGCAAGGAGGCTTCGGAGGAGTTCAACATTATGGCTCTCAACAAGGTGGAAGTTCTGGACAACAAACCTTTGGAGGTCAACCACTGAGATATGGCCCCACATTTGGGCAGAACAATCCAAGGCCAGGAGGAAATCAGAATTTCCCACCGATGGAGCAGCAGGGCAACATGCAAGGGGGGGAGCAGAGGACTTATGAATCTAGTGGTACAATGGGAACGGATCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGATACTGAAGATATGGCGCAGTATCATGACGTACTGAGAAATGATTTGTCAATTAGCTTTTGACTAGCTAAAGGTGATGGTTATTGTCTGAATAATTGAGAAATGATCACGATCAC-T--TC----CTCAACAATCACCAAGAAACTTGGACTGAGAAAATATTGTTGTGGTAAATAGTTTATCGATGTCTTAGTATGGTTATGGAAATGGTGCTTTGTGAATGATAACATGGAGAGACTCAGGTGTAAAACAAGCATCCGGTATATGTTTCTTTTTGTGTAAGGAAGAAGGTTTGTAATGCCTTTGCTTAA-T-TTTGTTATCTTAGCTAAGTTAGCAGCTGGAATTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321105" ref_strand="+" ref_description="SGN-E321105 [cTOB-13-O9]">
      <seq>aattatcgccctcctcagcagaactatgggccagcacagggtcatccaccacagcagaattatggtgcagcacagggtcctccaccacagcagaattataacgcgccacagggtcctccaccccagcagaactatggcccaccaaggtatcctccaccgcaacagaactatggctcacgacagtatgctccgccacctcaacagaactacagacaaccacaggatctttctccacagcagaattatgagcggccacagaatcctcagccaaaccagagttacggtgtacctcagagtgttccttctcagtggaatcatggccttcagccaaaatttgtacctcaacagatctatgggcctcaaggggctggggatcataggggtcctgcacctcctgatagcaacctagatgcgtgggataattcccaggttggatggggtgattcaatacgttcaccttttcctcgaagagaccagagaggtggtgcacctccagagcaaggaggctttggaggagttcaacattatgggtctcaacaaggtggaagttctgaacaacaaacctttggagatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="93606" stop="92431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93306" g_stop="92731" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E321105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93306" e_stop="92731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCGCCCTCCTCAGCAGAACTATGGGCCAGCACAGGGTCATCCACCACAGCAGAATTATGGTGCAGCACAGGGTCCTCCACCACAGCAGAATTATAACGCGCCACAGGGTCCTCCACCCCAGCAGAACTATGGCCCACCAAGGTATCCTCCACCGCAACAGAACTATGGCTCACGACAGTATGCTCCGCCACCTCAACAGAACTACAGACAACCACAGGATCTTTCTCCACAGCAGAATTATGAGCGGCCACAGAATCCTCAGCCAAACCAGAGTTACGGTGTACCTCAGAGTGTTCCTTCTCAGTGGAATCATGGCCTTCAGCCAAAATTTGTACCTCAACAGATCTATGGGCCTCAAGGGGCTGGGGATCATAGGGGTCCTGCACCTCCTGATAGCAACCTAGATGCGTGGGATAATTCCCAGGTTGGATGGGGTGATTCAATACGTTCACCTTTTCCTCGAAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAA</genome_strand>
        <mrna_strand>AATTATCGCCCTCCTCAGCAGAACTATGGGCCAGCACAGGGTCATCCACCACAGCAGAATTATGGTGCAGCACAGGGTCCTCCACCACAGCAGAATTATAACGCGCCACAGGGTCCTCCACCCCAGCAGAACTATGGCCCACCAAGGTATCCTCCACCGCAACAGAACTATGGCTCACGACAGTATGCTCCGCCACCTCAACAGAACTACAGACAACCACAGGATCTTTCTCCACAGCAGAATTATGAGCGGCCACAGAATCCTCAGCCAAACCAGAGTTACGGTGTACCTCAGAGTGTTCCTTCTCAGTGGAATCATGGCCTTCAGCCAAAATTTGTACCTCAACAGATCTATGGGCCTCAAGGGGCTGGGGATCATAGGGGTCCTGCACCTCCTGATAGCAACCTAGATGCGTGGGATAATTCCCAGGTTGGATGGGGTGATTCAATACGTTCACCTTTTCCTCGAAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273220" ref_strand="+" ref_description="SGN-E273220 [cLEM-24-E17]">
      <seq>ttacgagggtagagtttattgagacttatgtgcagactgctgggaaggtcttcgggagtgtggaagaggctaanaaaaagatttatgccttaagcacaacaacttaccgaggttttcaggtcttgtgttcagaggacacatcgaagaagtttgaaggtctcccaggagttgtgtttgtactgcctgattcctatattgatccagtaaacaaggaatatggaggtgacaagtataataacggagaaatcattgagagaccacctcctccacagtttcaaagacaaggtagcaggcctcgaagaggcccacagtatcaacaaggcaattatcgccctcctcagcagaactatgggccagcacagggtcatccaccacagcagaattatggtgcagcacagggtcctccaccacagcagaattataacgcgccacagggtcctccaccccagcagaactatggcccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="94799" stop="92863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94499" g_stop="94442" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94441" i_stop="93767" i_length="675">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93766" g_stop="93669" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="156" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93668" i_stop="93584" i_length="85">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93583" g_stop="93518" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="222" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93517" i_stop="93408" i_length="110">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93407" g_stop="93163" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="467" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E273220" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94499" e_stop="94442"/>
          <exon e_start="93766" e_stop="93669"/>
          <exon e_start="93583" e_stop="93518"/>
          <exon e_start="93407" e_stop="93163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAGGTGGGTGTAGATTATGTTGTATATTTCTTTCTGAGCAATGATAAATGCATTGTTTGTCTGATATAGAGGTTGTCTCTGCTATCAGGTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAGGTCTGAATGTTATTTTTTATTAGCATTTCAAAACCATGGTTATGCTGTATATGATATAACTTGAATTTTGTTGTGGTTTCCTCCTGCTTCTATCGTGCTATTTACATCAGGTGACAAGTATAATAACGGAGAAATCATTGAGAGACCACCTCCTCCACAGTTTCAAAGACAAGGTAGCAGGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCGCCCTCCTCAGCAGAACTATGGGCCAGCACAGGGTCATCCACCACAGCAGAATTATGGTGCAGCACAGGGTCCTCCACCACAGCAGAATTATAACGCGCCACAGGGTCCTCCACCCCAGCAGAACTATGGCCCACCA</genome_strand>
        <mrna_strand>TTACGAGGGTAGAGTTTATTGAGACTTATGTGCAGACTGCTGGGAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAGGCTAANAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG.....................................................................................GTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAG..............................................................................................................GTGACAAGTATAATAACGGAGAAATCATTGAGAGACCACCTCCTCCACAGTTTCAAAGACAAGGTAGCAGGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCGCCCTCCTCAGCAGAACTATGGGCCAGCACAGGGTCATCCACCACAGCAGAATTATGGTGCAGCACAGGGTCCTCCACCACAGCAGAATTATAACGCGCCACAGGGTCCTCCACCCCAGCAGAACTATGGCCCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428889" ref_strand="+" ref_description="SGN-E428889 [STM-51-G23]">
      <seq>ttcagagtcaacttcctcatttcattctcttctccgtcggcaaccacccatatccaccggcgatggcgctgtatacttctcgtctccggcgagctctccctctttcctcatccattttcgctcaaacattccatcaaccaaatctcatttctccaattgcatcactctcccaaagttcgtctacccaaagcaatttgtctaagcttaaccgctttgattttccgtcccaatcgagactatttaggtcttctacaatttcgctgtcctcgaggtctcgatcatttgaccggaacccagctgatgatgaaataggtcccgacacaatcctcttcgaaggatgcgattatgaacattggctaattgtaattgattttcctaaagatactcaacttacgagggaagatatgattgagacttatgtgcagactgctgcgaaggtcttcgggagtgtggaagaggctaagaaaaagatttatgccttaagcacaacgacttaccggggttttcaggtcttgtgttcagaggacacatcgaagaagtttgaaggtctccctggagttgtgtttgtactgcctgattcctatattgatccagtaaacaggnaatatggaggtgacaagtataataatggggaaatcattgagagacacctcctccacagtttcaaagacaaggtagcaagcctcgaagaagccacagtatcaacaagcaattatcgcccactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="95187" stop="92994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94889" g_stop="94442" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94441" i_stop="93767" i_length="675">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93766" g_stop="93669" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="546" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93668" i_stop="93584" i_length="85">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93583" g_stop="93518" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="612" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93517" i_stop="93408" i_length="110">
            <donor d_prob="0.827" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93407" g_stop="93296" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="721" r_length="109" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E428889" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94889" e_stop="94442"/>
          <exon e_start="93766" e_stop="93669"/>
          <exon e_start="93583" e_stop="93518"/>
          <exon e_start="93407" e_stop="93296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAGTTTACTTCCTCATTTCATTCTCTCCTCCGTCGGCAACCACACATATCCACCAGCGATGGCGCTGTATACTTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAGGTGGGTGTAGATTATGTTGTATATTTCTTTCTGAGCAATGATAAATGCATTGTTTGTCTGATATAGAGGTTGTCTCTGCTATCAGGTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAGGTCTGAATGTTATTTTTTATTAGCATTTCAAAACCATGGTTATGCTGTATATGATATAACTTGAATTTTGTTGTGGTTTCCTCCTGCTTCTATCGTGCTATTTACATCAGGTGACAAGTATAATAACGGAGAAATCATTGAGAGACCACCTCCTCCACAGTTTCAAAGACAAGGTAGCAGGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCGCCC</genome_strand>
        <mrna_strand>TTCAGAGTCAACTTCCTCATTTCATTCTCTTCTCCGTCGGCAACCACCCATATCCACCGGCGATGGCGCTGTATACTTCTCGTCTCCGGCGAGCTCTCCCTCTTTCCTCATCCATTTTCGCTCAAACATTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAAAGTTCGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGCTTTGATTTTCCGTCCCAATCGAGACTATTTAGGTCTTCTACAATTTCGCTGTCCTCGAGGTCTCGATCATTTGACCGGAACCCAGCTGATGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAACATTGGCTAATTGTAATTGATTTTCCTAAAGATACTCAACTTACGAGGGAAGATATGATTGAGACTTATGTGCAGACTGCTGCGAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACGACTTACCGGGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG.....................................................................................GTCTCCCTGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAGGNAATATGGAG..............................................................................................................GTGACAAGTATAATAATGGGGAAATCATTGAGAGA-CACCTCCTCCACAGTTTCAAAGACAAGGTAGCAAGCCTCGAAGAAG-CCACAGTATCAACAA-GCAATTATCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481323" ref_strand="+" ref_description="SGN-E481323 [cSTD-17-F14]">
      <seq>tgctgtataccttctcgtctccggcgagctctccctctttcctcttccattttcgctcaaacattccatcaaccaaatctcatttctccaattgcatcacctctcccaaagttcgtctacccaaagcaatttgtctaagcttaaccgctttgattttccgtcccaatcgagactatttaggtcttctacaatttcgctgtcctcgaggtctcgatcatttgaccggaacccagctgatgatgaaataggtcccgacacaatcctcttcgaaggatgcgattatgaacattggctaattgtaattgattttcctaaagatactcaacttacgagggaagagatgattgagacttatgtgcagactgctgcgaaggtcttcgggagtgtggaagaagctaagaaaaagatttatgccttaagcacaacaacttaccggggttttcaggtcttgtgttcagaggacacatcgaagaagtttgaaggtctcccaggagttgtgtttgtactgcctgattcctatattgatccagtaaacaaggaatatggaggtgacaagtataataatggggaaatcattgagagaccacctcctncacagtttcaaagacaaggtagcaagcctcgaagaggcccacagtatcaacaaggcaattatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="95122" stop="92999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94823" g_stop="94442" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94441" i_stop="93767" i_length="675">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93766" g_stop="93669" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="482" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93668" i_stop="93584" i_length="85">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93583" g_stop="93518" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="548" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93517" i_stop="93408" i_length="110">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93407" g_stop="93299" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="657" r_length="109" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E481323" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94823" e_stop="94442"/>
          <exon e_start="93766" e_stop="93669"/>
          <exon e_start="93583" e_stop="93518"/>
          <exon e_start="93407" e_stop="93299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTGTATAC-TTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCA-CTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAGGTGGGTGTAGATTATGTTGTATATTTCTTTCTGAGCAATGATAAATGCATTGTTTGTCTGATATAGAGGTTGTCTCTGCTATCAGGTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAGGTCTGAATGTTATTTTTTATTAGCATTTCAAAACCATGGTTATGCTGTATATGATATAACTTGAATTTTGTTGTGGTTTCCTCCTGCTTCTATCGTGCTATTTACATCAGGTGACAAGTATAATAACGGAGAAATCATTGAGAGACCACCTCCTCCACAGTTTCAAAGACAAGGTAGCAGGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCG</genome_strand>
        <mrna_strand>TGCTGTATACCTTCTCGTCTCCGGCGAGCTCTCCCTCTTTCCTCTTCCATTTTCGCTCAAACATTCCATCAACCAAATCTCATTTCTCCAATTGCATCACCTCTCCCAAAGTTCGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGCTTTGATTTTCCGTCCCAATCGAGACTATTTAGGTCTTCTACAATTTCGCTGTCCTCGAGGTCTCGATCATTTGACCGGAACCCAGCTGATGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAACATTGGCTAATTGTAATTGATTTTCCTAAAGATACTCAACTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCGAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAAGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGGGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG.....................................................................................GTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAG..............................................................................................................GTGACAAGTATAATAATGGGGAAATCATTGAGAGACCACCTCCTNCACAGTTTCAAAGACAAGGTAGCAAGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441939" ref_strand="+" ref_description="SGN-E441939 [cSTA-31-H23]">
      <seq>gtcaacttcctcatttcattctcttctccgtcggcaaccacccatatccaccggctatggcgctgtatacttctcgtctccggcgagctctccctctttcctcttccattttcgctcaaacattccatcaaccaaatctcatttctccaattgcatcactctcccaaagttcgtctacccaaagcaatttgtctaagcttaaccgctttgattttccgtcccaatcgagactatttaggtcatctacaatttcgctgtcctcgaggtctcgatcatttgaccggaacccagctgatgatgaaataggtcccgacacaatcctcttcgaaggatgcgattatgaacattggctaattgtaattgattttcctaaagatactcaacttacgagggaagatatgattgagacttatgtgcagactgctgctaaggtcttcgggagtgtggaagaggctaagaaaaagatttatgccttaagcacaacaacttaccggggttttcaggtcttgtgttcagaggacacatcgaagaagtttgaaggtctcccaggagttgtgtttgtactgcctgattcctatattgatccagtaaacaaggaatatggaggtgacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="95183" stop="93216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94883" g_stop="94442" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94441" i_stop="93767" i_length="675">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93766" g_stop="93669" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="540" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93668" i_stop="93584" i_length="85">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93583" g_stop="93518" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="606" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93517" i_stop="93408" i_length="110">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93407" g_stop="93400" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="614" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E441939" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94883" e_stop="94442"/>
          <exon e_start="93766" e_stop="93669"/>
          <exon e_start="93583" e_stop="93518"/>
          <exon e_start="93407" e_stop="93400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACTTCCTCATTTCATTCTCTCCTCCGTCGGCAACCACACATATCCACCAGCGATGGCGCTGTATACTTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAGGTGGGTGTAGATTATGTTGTATATTTCTTTCTGAGCAATGATAAATGCATTGTTTGTCTGATATAGAGGTTGTCTCTGCTATCAGGTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAGGTCTGAATGTTATTTTTTATTAGCATTTCAAAACCATGGTTATGCTGTATATGATATAACTTGAATTTTGTTGTGGTTTCCTCCTGCTTCTATCGTGCTATTTACATCAGGTGACAAG</genome_strand>
        <mrna_strand>GTCAACTTCCTCATTTCATTCTCTTCTCCGTCGGCAACCACCCATATCCACCGGCTATGGCGCTGTATACTTCTCGTCTCCGGCGAGCTCTCCCTCTTTCCTCTTCCATTTTCGCTCAAACATTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAAAGTTCGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGCTTTGATTTTCCGTCCCAATCGAGACTATTTAGGTCATCTACAATTTCGCTGTCCTCGAGGTCTCGATCATTTGACCGGAACCCAGCTGATGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAACATTGGCTAATTGTAATTGATTTTCCTAAAGATACTCAACTTACGAGGGAAGATATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGGGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG.....................................................................................GTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAG..............................................................................................................GTGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483447" ref_strand="+" ref_description="SGN-E483447 [cSTE-9-O6]">
      <seq>caaccacccatatccaccggctatggcgctgtatacttctcgtctccggcgagctctccctctttcctcttccattttcgctcaaacattccatcaaccaaatctcatttctccaattgcatcactctcccaaagttcgtctacccaaagcaatttgtctaagcttaaccgctttgattttccgtcccaatcgagactatttaggtcatctacaatttcgctgtcctcgaggtctcgatcatttgaccggaacccagctgatgatgaaataggtcccgacacaatcctcttcgaaggatgcgattatgaacattggctaattgtaattgattttcctaaagatactcaacttacgagggaagatatgattgagacttatgtgcagactgctgctaaggtcttcgggagtgtggaagaggctaagaaaaagatttatgccttaagcacaacaacttaccggggttttcaggtcttgtgttcagaggacacatcgaagaagtttgaaggtctcccangagttgtgtttgtactgcctgattcctatattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="95149" stop="93241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94849" g_stop="94442" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94441" i_stop="93767" i_length="675">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93766" g_stop="93669" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="506" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93668" i_stop="93584" i_length="85">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93583" g_stop="93541" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="549" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E483447" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94849" e_stop="94442"/>
          <exon e_start="93766" e_stop="93669"/>
          <exon e_start="93583" e_stop="93541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCACACATATCCACCAGCGATGGCGCTGTATACTTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAGGTGGGTGTAGATTATGTTGTATATTTCTTTCTGAGCAATGATAAATGCATTGTTTGTCTGATATAGAGGTTGTCTCTGCTATCAGGTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGA</genome_strand>
        <mrna_strand>CAACCACCCATATCCACCGGCTATGGCGCTGTATACTTCTCGTCTCCGGCGAGCTCTCCCTCTTTCCTCTTCCATTTTCGCTCAAACATTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAAAGTTCGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGCTTTGATTTTCCGTCCCAATCGAGACTATTTAGGTCATCTACAATTTCGCTGTCCTCGAGGTCTCGATCATTTGACCGGAACCCAGCTGATGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAACATTGGCTAATTGTAATTGATTTTCCTAAAGATACTCAACTTACGAGGGAAGATATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGGGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG.....................................................................................GTCTCCCANGAGTTGTGTTTGTACTGCCTGATTCCTATATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E582772" ref_strand="+" ref_description="SGN-E582772 [8405]">
      <seq>gcgatggcgctgtatacttctcgtctccggcgagctctccctctttcctcttccattttcgctcaaacattccatcaaccaaatctcatttctccaattgcatcactctcccaaagttcgtctacccaaagcaatttgtctaagcttaaccgctttgattttccgtcccaatcgagactatttaggtcttctacaatttcgctgtcctcgaggtctcgatcatttgaccggaacccagctgatgatgaaataggtcccgacacaatcctcttcgaaggatgcgattatgaacattggctaattgtaattgattttcctaaagatactcaacttacgagggaagagatgattgagacttatgtgcagactgctgcgaaggtcttcgggagtgtggaagaggctaagaaaaagatttatgccttaagcacaacaacttaccggggttttcagcgtcttggtgttcagaggacacatccgaagaagtttgaaggtctcccagggagtttgtgtttgtactgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="95130" stop="93254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94830" g_stop="94442" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94441" i_stop="93767" i_length="675">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93766" g_stop="93669" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="490" r_length="101" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93668" i_stop="93584" i_length="85">
            <donor d_prob="0.859" d_score="0.85"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93583" g_stop="93554" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="522" r_length="32" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E582772" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94830" e_stop="94442"/>
          <exon e_start="93766" e_stop="93669"/>
          <exon e_start="93583" e_stop="93554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATGGCGCTGTATACTTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAG-GTCTT-GTGTTCAGAGGACACAT-CGAAGAAGTTTGAAGGTGGGTGTAGATTATGTTGTATATTTCTTTCTGAGCAATGATAAATGCATTGTTTGTCTGATATAGAGGTTGTCTCTGCTATCAGGTCTCCCA-GGAG-TTGTGTTTGTACTGCCTG</genome_strand>
        <mrna_strand>GCGATGGCGCTGTATACTTCTCGTCTCCGGCGAGCTCTCCCTCTTTCCTCTTCCATTTTCGCTCAAACATTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAAAGTTCGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGCTTTGATTTTCCGTCCCAATCGAGACTATTTAGGTCTTCTACAATTTCGCTGTCCTCGAGGTCTCGATCATTTGACCGGAACCCAGCTGATGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAACATTGGCTAATTGTAATTGATTTTCCTAAAGATACTCAACTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCGAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGGGGTTTTCAGCGTCTTGGTGTTCAGAGGACACATCCGAAGAAGTTTGAAG.....................................................................................GTCTCCCAGGGAGTTTGTGTTTGTACTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481341" ref_strand="+" ref_description="SGN-E481341 [cSTD-17-J8]">
      <seq>ttcagagtcaacttcctcatttcattctcttctccgtcggcaaccacccatatccaccggcgatggcgctgtatacttctcgtctccggcgaagctctccctctttcctcatccattttcgctcaaacattccatcaaccaaatctcatttctccaattgcatcactctcccaaagttcgtctacccaaagcaatttgtctaagcttaaccgctttgattttccgtcccaatcgagactatttaggtcttctacaatttcgctgtcctcgaggtctcgatcatttgaccggaacccagctgatgatgaaataggtcccgacacaatcctcttcgaaggatgcgattatgaacattggctaattgtaattgattttcctaaagatactcaacttacgagggaagatatgattgagacttatgtgcagactgctgcgaaggtcttcgggagtgtggaagaggctaagaaaaagatttatgccttaagcacaacgacttaccggggttttcaggtcttgtgttcagaggacacatcgaagaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="95187" stop="93372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94889" g_stop="94442" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94441" i_stop="93767" i_length="675">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93766" g_stop="93672" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="544" r_length="95" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E481341" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94889" e_stop="94442"/>
          <exon e_start="93766" e_stop="93672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAGTTTACTTCCTCATTTCATTCTCTCCTCCGTCGGCAACCACACATATCCACCAGCGATGGCGCTGTATACTTCCCGTCTCCGGCGA-GCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTG</genome_strand>
        <mrna_strand>TTCAGAGTCAACTTCCTCATTTCATTCTCTTCTCCGTCGGCAACCACCCATATCCACCGGCGATGGCGCTGTATACTTCTCGTCTCCGGCGAAGCTCTCCCTCTTTCCTCATCCATTTTCGCTCAAACATTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAAAGTTCGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGCTTTGATTTTCCGTCCCAATCGAGACTATTTAGGTCTTCTACAATTTCGCTGTCCTCGAGGTCTCGATCATTTGACCGGAACCCAGCTGATGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAACATTGGCTAATTGTAATTGATTTTCCTAAAGATACTCAACTTACGAGGGAAGATATGATTGAGACTTATGTGCAGACTGCTGCGAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACGACTTACCGGGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304915" ref_strand="+" ref_description="SGN-E304915 [cLEX-10-O8]">
      <seq>ggagctttgattaatggatttgctcagaatgttgctatgctcattattggtcgtatttttcttggttttggttattgctagtgaagcttctaggaaaattgaacatccctggaggaacttgttgcaaaagaaatatagaccacatcttacaatggcaattatgatcccatttttccaacaacttactggaatcaacgtgattatgttttatgcacctgtgttgtttaaaaccattggttttggtactgatgcttcacttatgtctgctgtgatcactggtggaatcaatgtcattgccactattgtttctatttactatgttgataaattaggaagaagattcttgtttcttgaaggtggaattcaaatgctcttttcccaaatagccgtggcaattttgatagcaataaagtttggagtaaatggaactccaggggaattaccaaaatggtatgcaatagtggttgtgatattcatttgtgtatatgttgctggattcgcttggtcatggggtcctcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="103442" stop="106431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103742" g_stop="103811" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103812" i_stop="105588" i_length="1777">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105589" g_stop="105900" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="382" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105901" i_stop="105990" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105991" g_stop="106131" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="523" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E304915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103742" e_stop="103811"/>
          <exon e_start="105589" e_stop="105900"/>
          <exon e_start="105991" e_stop="106131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTTGATTAATGGATTTGCTCAGAATGTTGCTATGCTCATTATTGGTCGTATTTTTCTTGGTTTTGGTATTGGATTTGCCAATCAGGTGCGTCTATTTTTTTTATTCAATTTAAGTTTTGTGTGCTTGTTGTAAAAAATATTCATTGAACGAGCCTTCTTGTGGTTGGCATGTGGTAATATTCCTAATTATTTGTTTGTTGGTCCGCGCCAATATTACAATAAAAATAACTTTTAGCAGTAATAAATATTAAGTGCTACAATTTCTTTTAGCAGCAGAATCAATATCGCAAAAGATTTTATGACTTTACTTGGCTAATGATCATTTTTGATACAGTACGTGTTTATGCTATTGAGCAACATTATCTATGTGTTTGTCTCTGTTTAATTATTTTTTTTTCTTTCATTTAGTTCAAGGCTGTTCTGTTCTATGGTTCCCCTGTTCTTTTGGATTATGCCATGGAATTATGTTTATTTGTTTTATTTATTTATTTATTTCTTGGTTTTTAAAAACTGTAAAATATAATAATGGCAAGTTGTCGGTCAACACTTCTCCTGCTGTGCGGATCTGAATGGCAGCAAGTACTTACTGAATCCATATATTAGACCACTCATTAAATATATTTTTATTTTATTTTTCTTAGAAAATAATCTTTTTATATTTTGTAAAAAAAAAATTACACTTGAAATCTTAGTATTCACTAAATATCTTGTATTTGTCCATTGAATAATGAAAATATTTTTTGGTTTAAAAGAAAAATGTGTTTTGAATACAACATCATTGTGATTTGGACTTTCGAGCTCTTCCAAGTAAGAGGAACCTACTTTTTTAAATATTGCACGTTAACCCTACATGAAAAGACTTTTTTGCTAAAAAAAACCCCACCACGCACTGTAAACAGTCCATATTTCACCATTATATATATTTTTTTAAAAAAATAATTATTCTTCAGTCCTTTAATTTGAAAAATAAATCTACTTTGGGATTCTTCAGCAAGTTGTGATTGTCATTATCACTTAATCAATATTTAATCCAATGAAAGTTGTTGAGATTTTTTTTTTAAAAAAAAAAACTCTTTTCCTAAAACACTGTTTAGATGTGTGTATTTTATTTTACTCCAATTTTTGTGACGTTGCCGTGATTTCTTTTCTACACCGTTAGCTCATGAATACGACTATTTATAATAATAAACAAATTCGTATAAATCATAAAATTTACATATTTGTTTTTATTTTACTTTCTTTAATTAAGTATTATTGATATATATTGTGTTTTTTATCAACTAGGACAAGAACAAGTGGCCCCCCCTCATGAAGAAAATACAATTCCTCTTACTTTTTTTTTTTTTTAATGTTAACTCGATAATATTTTAGTATTTGAATTTTGAGATTTTAATCATGTCAAGTAGAATGTTGAAATCAAAAGAGTTATCCGATATAGAAAAAAATTGTTATCTTTTTAATGGGACTAAAAAAAGTTTCAGTCAGATACTTAAATTGAACTATTTTTGTTGTTGTTTCATTGACTTGCAGTCTGTTCCACTATACCTATCAGAAATGGCACCATACAAATACAGAGGAGCACTGAACATAGGTTTTCAACTTTCCATCACCATTGGTATACTTGTAGCCAATGTGTTAAACTATTTCTTTGCCAAAATTCATTGGGGATGGAGATTGAGTTTAGGAGGTGCTATGGTACCTGCATTGATCATCACAATAGGTTCATTATTCCTCCCTGAAACCCCTAATTCGATGATCGAACGTGGTAACCACGACGAAGCCAAAGCTCGATTGAAGAGAATTAGGGGAATTGAAGATGTAGATGAAGAGTTCAATGATTTGGTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAAGTAAGTCCATTTCTTTTTTCTTGCGAATTCAGAAAATTTAGAGTCTATTTTCTAATTTGAACTTGTTTTTTTTTTTGAATTGATGTACAGATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGA</genome_strand>
        <mrna_strand>GGAGCTTTGATTAATGGATTTGCTCAGAATGTTGCTATGCTCATTATTGGTCGTATTTTTCTTGGTTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAA..........................................................................................ATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744801" ref_strand="+" ref_description="SGN-E744801 [GI|5734437]">
      <seq>aaccacgacgaagccaaagctcgattgaagagaattaggggaattgaagatgtagatgaagagttcaatgatttggttattgctagtgaagcttctaggaaaattgaacatccctggaggaacttgttgcaaaagaaatatagaccacatcttacaatggcaattatgatcccatttttccaacaacttactggaatcaacgtgattatgttttatgcacctgtgttgtttaaaaccattggttttggtactgatgcttcacttatgtctgctgtgatcactggtggaatcaatgtcattgccactattgtttctatttactatgttgataaattaggaagaagattcttgtttcttgaaggtggaattcaaatgctcttttcccaaatagccgtggcaattttgatagcaataaagtttggagtaaatggaactccaggggaattaccaaaatggtatgcaatagtggttgtgatattcatttgtgtatatgttgctggattcgcttggtcatggggtcctcttggatggctcgtacctagtgaaattttcccactggaaattcgatcagctgcacaaagtatcaatgtctcagtgaacatgatcttcacatttgcagtagcacaagttttcttaacaatgttgtgtcatttgaagtttggattgtttctgtttttcgccttctttgtggtgattatgactgtgttcatatacttcttcttgcctgagacgaaaaatattccgatagaagagatggtgattgtgtggaaagaacattggttctggtctaagttcatgactgaagttgattatcctggaactaggaatggaactgctgttgaaatggctaaagggggtgctggttacaaaattgtatgactttagtttgggtttttaaatttttatttgttgtttgtataatgttgtagtggggatgatattgataattattaattagatttgattgaaactgtttctattgtttacttttgcatagaaaaaaatacataactttgttcaatagaaaatttggcaaagcaactgtgtagccttttgtttgttttgttggatgtactatttagtagttctagtcttttagtgtaagatctttattataaaaaattatgttcataagctgtataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="105214" stop="107042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105514" g_stop="105900" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105901" i_stop="105990" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105991" g_stop="106742" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="1139" r_length="752" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1140" polyA_stop="1161"/>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E744801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1139</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105514" e_stop="105900"/>
          <exon e_start="105991" e_stop="106742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACGACGAAGCCAAAGCTCGATTGAAGAGAATTAGGGGAATTGAAGATGTAGATGAAGAGTTCAATGATTTGGTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAAGTAAGTCCATTTCTTTTTTCTTGCGAATTCAGAAAATTTAGAGTCTATTTTCTAATTTGAACTTGTTTTTTTTTTTGAATTGATGTACAGATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCTTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTATGTTCATAAGCTGT</genome_strand>
        <mrna_strand>AACCACGACGAAGCCAAAGCTCGATTGAAGAGAATTAGGGGAATTGAAGATGTAGATGAAGAGTTCAATGATTTGGTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAA..........................................................................................ATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCTTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTATGTTCATAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394162" ref_strand="+" ref_description="SGN-E394162 [TUS-42-G17](-)">
      <seq>cttcaggggaattaccaaaatggtatgcaatagtggttgtgatattcatttgtgtatatgttgctggattcgcttggtcatggggtcctcttggatggctcgtacctagtgaaattttcccactggaaattcgatcagctgcacaaagtatcaatgtctcagtgaacatgatcttcacatttgcagtagcacaagttttcttaacaatgttgtgtcatttgaagtttggattgtttctgtttttcgccttctttgtggtgattatgactgtgttcatatacttcttcttgcctgagacgaaaaatattccgatagaagagatggtgattgtgtggaaagaacattggttctggtctaagttcatgactgaagttgattatcctggaactaggaatggaactgctgttgaaatggctaaagggggtgctggttacaaaattgtatgactttagtttgggtttttaaatttttatttgttgtttgtataatgttgtagtggggatgatattgataattattaattagatttgattgaaactgtttctattgtttacttttgcatagaaaaaaatacataactttgttcaatagaaaatttggcaaagcaactgtgtagccctttgtttgttttgttggatgtactatttagtagttctagtcttttagtgtaagatctttattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="105737" stop="107025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106037" g_stop="106729" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E394162" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106037" e_stop="106729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCTTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTAT</genome_strand>
        <mrna_strand>CTTCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCCTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398079" ref_strand="+" ref_description="SGN-E398079 [TUS-42-G17]">
      <seq>ctccaggggaattaccaaaatggtatgcaatagtggttgtgatattcatttgtgtatatgttgctggattcgcttggtcatggggtcctcttggatggctcgtacctagtgaaattttcccactggaaattcgatcagctgcacaaagtatcaatgtctcagtgaacatgatcttcacatttgcagtagcacaagttttcttaacaatgttgtgtcatttgaagtttggattgtttctgtttttcgccttctttgtggtgattatgactgtgttcatatacttcttcttgcctgagacgaaaaatattccgatagaagagatggtgattgtgtggaaagaacattggttctggtctaagttcatgactgaagttgattatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="105737" stop="106718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106037" g_stop="106418" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E398079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106037" e_stop="106418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCC</genome_strand>
        <mrna_strand>CTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393617" ref_strand="+" ref_description="SGN-E393617 [TUS-42-I17]">
      <seq>ctccaggggaattaccttaatggtatgcaatagtggttgtgatattcatttgtgtatatgttgctggattcgcttggtcatggggtcttcttggatggctcgtacctagtgaaattttcccagtggaaattcgatcatctgcacaaagtatccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="105737" stop="106493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106037" g_stop="106193" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E393617" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106037" e_stop="106193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGT</genome_strand>
        <mrna_strand>CTCCAGGGGAATTACCTTAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCTTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCAGTGGAAATTCGATCATCTGCACAAAGTATCCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285018" ref_strand="+" ref_description="SGN-E285018 [cLER-19-B17]">
      <seq>tccaggggaattaccaaaatggtatgcaatagtggttgtgatattcatttgtgtatatgttgctggattcgcttggtcatggggtcctcttggatggctcgtacctagtgaaattttcccactggaaattcgatcagctgcacaaagtatcaatgtctcagtgaacatgatcttcacatttgcagtagcacaagttttcttaacaatgttgtgtcatttgaagtttggattgtttctgtttttcgccttctttgtggtgattatgactgtgttcatatacttcttcttgcctgagacgaaaaatattccgatagaagagatggtgattgtgtggaaagaacattggttctggtctaagttcatgactgaagttgattatcctggaactaggaatggaactgctgttgaaatggctaaagggggtgctggttacataattgtatgactttagtttgggttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="105738" stop="106799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106038" g_stop="106499" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E285018" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106038" e_stop="106499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTT</genome_strand>
        <mrna_strand>TCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACATAATTGTATGACTTTAGTTTGGGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394166" ref_strand="+" ref_description="SGN-E394166 [TUS-42-I17](-)">
      <seq>agtgaaaattttcccactggaaattggatcagctgcacaaagtatcaatgtttcagtgaacatgatcttcacatttgcagtagcacaagtttttttaacaatgttgtgtcatttgaagtttggattgtttctgtttttcgccttctttgtggtgattatgactgtgttcatatacttcttcttgcctgagacgaaaaatattccgatagaagagatggtgattgtgtggaaagaacattggttctggtctaagttcatgactgaagttgattatcctggaactaggaatggaactgctgttgaaatggctaaagggggtgctggttacaaaattgtatgactttagtttgggtttttaaatttttatttgttgtttgtataatgttgtagtggggatgatattgataattattaattagatttgattgaaactgtttctattgtttacttttgcatagaaaaaaatacataactttgttcaatagaaaatttggcaaagcaactgtgtagccctttgtttgttttgttggatgtactatttagtagttctagtcttttagtgtaagatctttattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="105844" stop="107025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106144" g_stop="106729" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E394166" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106144" e_stop="106729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTG-AAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCTTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTAT</genome_strand>
        <mrna_strand>AGTGAAAATTTTCCCACTGGAAATTGGATCAGCTGCACAAAGTATCAATGTTTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTTTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCCTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733781" ref_strand="+" ref_description="SGN-E733781 [LB10DG02]">
      <seq>cattagtgaggtcgaattaccaaacccactatgcagaaaataattcaatatatcatctttaattaatgagtctcacgcagtgggtgttatgcaacactagatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactccagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaaccgtattcaagtttgtagagcatccagaaaataatgaaaaaccaatggaccagaagagcagagtgaagttcaagatcatgagcctcaaggtgaaaggaccgatggactatgtacctgagctgtttgaagagcaaaaggatcaagtagccgtagagcaaattctgcgggttatctttctcgatgtggaacgtcctagtccaactttggaaaaattgaagcgccagctggcggaggcagacgctgctcttgaggaacgcaagaagcctgtggaagatacaggtccaaagattattggtgaagggcttgtcatagatgaatggaaggaaagaagagagaggtacctagctcggcagcaagttgaaggcggtgtggaatctgtataacttgcaggtattgtttcgacatcttagctttggctggaaaagataccagccttattgttgtgtgtaattggttgttctattatgtcactaaacacattagtgaacattcacaagagagaatttcaatgtcccaatcacagttacttggtataacctcaaagctgtatataatgtcattccttttaagtaatgagagattttcagttgaaaaaaaacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="116661" stop="43254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116362" g_stop="116263" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116262" i_stop="115425" i_length="838">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115424" g_stop="115354" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="171" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115353" i_stop="115187" i_length="167">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115186" g_stop="115105" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="253" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115104" i_stop="114966" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114965" g_stop="114847" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="372" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114846" i_stop="114421" i_length="426">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114420" g_stop="114343" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="450" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114342" i_stop="114205" i_length="138">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114204" g_stop="114085" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="570" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="114084" i_stop="113987" i_length="98">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113986" g_stop="113717" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="840" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="113716" i_stop="113570" i_length="147">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.219" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="113569" g_stop="113548" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="862" r_length="22" r_score="0.682"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E733781" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116362" e_stop="116263"/>
          <exon e_start="115424" e_stop="115354"/>
          <exon e_start="115186" e_stop="115105"/>
          <exon e_start="114965" e_stop="114847"/>
          <exon e_start="114420" e_stop="114343"/>
          <exon e_start="114204" e_stop="114085"/>
          <exon e_start="113986" e_stop="113717"/>
          <exon e_start="113569" e_stop="113548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTGGTTAGTAGATTATTTCTTTGCAAGGAAGTTCCTTTCCTTTTTAGCATGTCCTTCAGCACTTCCAGTTTCCGTGATAAAAGAAGCTGGTTTTGAGTCTGTTCTATACTTTTATTACATTAGGTCAATTGTTTCTTTCTGGGGGTTTGGTGGGCTGGGGGCTTCAGTTATCACTTTTTGATGGCGAAGGCATACTTCTGATTTTTGTCAAAGAACATCGGGTTCTCCCTCAGTAGGTTTTTGTTTTCAATGATAATGTGGTGAATTATACCACCAAAATTGGCTCTGTGATGAACTGCATAGTCATTACACTTCAGCAAAGATGTTTTCATCCATGCTGAAAGATGCATTTTTAATTATGTTGAAAACTGCATAGCTTTAGGGGAAACCTGTTCAAATTATCTCTAATCATCGCCTCTATGTTCTTAGTTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGGGTAACTATCGTTTCAACTTACAATTAGAATCTTGTAATTCCTTTTCCTGACGCTTTAGTGTTTCATAATCCTGTTTTCTTCTCCTTTGTGCTTTATAGAAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTGAAGGGACCTTTATGATTTACTTCTTTAATCAGTGTATGTATCCAAAATTTAACTACACAGTTTTAAATATTCATAAAATTGAGAAAATATATTCTCTGTCAAAGTCATCATCTAATAATTTAAAATAAAAATTGAACGGGGAAACAGAAGCAAAACAAGAAACAGATAC</genome_strand>
        <mrna_strand>CATTAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA..........................................................................................................................................ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG..................................................................................................AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTG...................................................................................................................................................AAAAAAAACAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543014" ref_strand="+" ref_description="SGN-E543014 [TUS-64-J20](-)">
      <seq>tagcaacagttccagctccgtttcttcagtagccaggtctttgcttcctgcacgccgtcggtgaaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactccagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaaccgtattcaagtttgtagagcatccagaaaataatgaaaaaccaatggaccagaagagcagagtgaagttcaagatcatgagcctcaaggtgaaaggaccgatggactatgtacctgagctgtttgaagagcaaaaggatcaagtagccgtagagcaaattctgcgggttatctttctcgatgtggaacgtcctagtccaactttggaaaaattgaagcgccagctggcggaggcagacgctgctcttgaggaacgcaagaagcctgtggaagatacaggtccaaagattattggtgaagggcttgtcatagatgaatggaaggaaagaagagagaggtacctagctcggcagcaagttgaaggcggtgtggaatctgtataacttgcaggtattgtttcgacatcttagctttggctggaaaagataccagccttattgttgtgtgtaattggttgttctattatgtcactaaacacattagtgaacattcacaagagagaatttcaatgtcccaatcacagttacttggtataacctcaaagctgntatataatgtcattccttttaagtaatgagagattttcagttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="117825" stop="113415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117525" g_stop="117428" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117427" i_stop="115425" i_length="2003">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115424" g_stop="115354" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="169" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115353" i_stop="115187" i_length="167">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115186" g_stop="115105" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="251" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115104" i_stop="114966" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114965" g_stop="114847" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="370" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114846" i_stop="114421" i_length="426">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114420" g_stop="114343" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="448" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114342" i_stop="114205" i_length="138">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114204" g_stop="114085" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="568" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="114084" i_stop="113987" i_length="98">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113986" g_stop="113716" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="840" r_length="272" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="113715" i_stop="113570" i_length="146">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.219" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="113569" g_stop="113555" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="855" r_length="15" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E543014" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117525" e_stop="117428"/>
          <exon e_start="115424" e_stop="115354"/>
          <exon e_start="115186" e_stop="115105"/>
          <exon e_start="114965" e_stop="114847"/>
          <exon e_start="114420" e_stop="114343"/>
          <exon e_start="114204" e_stop="114085"/>
          <exon e_start="113986" e_stop="113716"/>
          <exon e_start="113569" e_stop="113555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTGGTTAGTAGATTATTTCTTTGCAAGGAAGTTCCTTTCCTTTTTAGCATGTCCTTCAGCACTTCCAGTTTCCGTGATAAAAGAAGCTGGTTTTGAGTCTGTTCTATACTTTTATTACATTAGGTCAATTGTTTCTTTCTGGGGGTTTGGTGGGCTGGGGGCTTCAGTTATCACTTTTTGATGGCGAAGGCATACTTCTGATTTTTGTCAAAGAACATCGGGTTCTCCCTCAGTAGGTTTTTGTTTTCAATGATAATGTGGTGAATTATACCACCAAAATTGGCTCTGTGATGAACTGCATAGTCATTACACTTCAGCAAAGATGTTTTCATCCATGCTGAAAGATGCATTTTTAATTATGTTGAAAACTGCATAGCTTTAGGGGAAACCTGTTCAAATTATCTCTAATCATCGCCTCTATGTTCTTAGTTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGGGTAACTATCGTTTCAACTTACAATTAGAATCTTGTAATTCCTTTTCCTGACGCTTTAGTGTTTCATAATCCTGTTTTCTTCTCCTTTGTGCTTTATAGAAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTG-TATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTGAAGGGACCTTTATGATTTACTTCTTTAATCAGTGTATGTATCCAAAATTTAACTACACAGTTTTAAATATTCATAAAATTGAGAAAATATATTCTCTGTCAAAGTCATCATCTAATAATTTAAAATAAAAATTGAACGGGGAAACAGAAGCAAAACAAGAAA</genome_strand>
        <mrna_strand>TAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTGAAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA..........................................................................................................................................ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG..................................................................................................AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGNTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTGA..................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225826" ref_strand="+" ref_description="SGN-E225826 [cLEL-17-E16](-)">
      <seq>gttatctttctcgatgtggaacgtcctagtccaactttggaaaaattgaagcgccagctggcggaggcagacgctgctcttgaggaacgcaagaagcctgtggaagatacaggtccaaagattattggtgaagggcttgtcatagatgaatggaaggaaagaagagagaggtacctagctcggcagcaagttgaaggcggtgtggaatctgtataacttgcaggtattgtttcgacatcttagctttggctggaaaagataccagccttattgttgtgtgtaattggttgttctattatgtcactaaacacattagtgaacattcacaagagagaatttcaatgtcccaatcacagttacttggtataacctcaaagctgtatataatgtcattccttttaagtaatgagagattttcagttgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="114675" stop="113415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114375" g_stop="114343" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114342" i_stop="114205" i_length="138">
            <donor d_prob="0.763" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114204" g_stop="114085" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="153" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114084" i_stop="113987" i_length="98">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113986" g_stop="113715" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="425" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="447"/>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E225826" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114375" e_stop="114343"/>
          <exon e_start="114204" e_stop="114085"/>
          <exon e_start="113986" e_stop="113715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGGGTAACTATCGTTTCAACTTACAATTAGAATCTTGTAATTCCTTTTCCTGACGCTTTAGTGTTTCATAATCCTGTTTTCTTCTCCTTTGTGCTTTATAGAAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTGAA</genome_strand>
        <mrna_strand>GTTATCTTTCTCGATGTGGAACGTCCTAGTCCA..........................................................................................................................................ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG..................................................................................................AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211576" ref_strand="+" ref_description="SGN-E211576 [cLEC-67-M7]">
      <seq>ttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactccagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaaccgtattcaagtttgtagagcatccagaaaataatgaaaaaccaatggaccagaagagcagagtgaagttcaagatcatgagcctcaaggtgaaaggaccgatggactatgtacctgagctgtttgaagagcaaaaggatcaagtagccgtagagcaaattctgcgggttatctttctcgatgtggaacgtcctagtccaactttggaaaaattgaagcgccagctggcggaggcagacgctgctcttgaggaacgcaagaagcctgtggaagatacaggtccaaagattattggtgaagggcttgtcatagatgaatggaaggaaagaagagagaggtacctagctcggcagcaagttgaaggcggtgtggaatctgtataacttgcaggtattgtttcgacatcttagctttggctggaaaagtaccagccttattgttgtgtgtaattggttgttctattatgtcactaaacacattagtgaacattcacaagagagaatttcaatgtcccaatcacagttacttggtataacctcaaagctgtatataatgtcattcccttttagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="117781" stop="113434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117481" g_stop="117428" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117427" i_stop="115425" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115424" g_stop="115354" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="125" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115353" i_stop="115187" i_length="167">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115186" g_stop="115105" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="207" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115104" i_stop="114966" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114965" g_stop="114847" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="326" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114846" i_stop="114421" i_length="426">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114420" g_stop="114343" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="404" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114342" i_stop="114205" i_length="138">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114204" g_stop="114085" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="524" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="114084" i_stop="113987" i_length="98">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113986" g_stop="113734" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="776" r_length="252" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E211576" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117481" e_stop="117428"/>
          <exon e_start="115424" e_stop="115354"/>
          <exon e_start="115186" e_stop="115105"/>
          <exon e_start="114965" e_stop="114847"/>
          <exon e_start="114420" e_stop="114343"/>
          <exon e_start="114204" e_stop="114085"/>
          <exon e_start="113986" e_stop="113734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTGGTTAGTAGATTATTTCTTTGCAAGGAAGTTCCTTTCCTTTTTAGCATGTCCTTCAGCACTTCCAGTTTCCGTGATAAAAGAAGCTGGTTTTGAGTCTGTTCTATACTTTTATTACATTAGGTCAATTGTTTCTTTCTGGGGGTTTGGTGGGCTGGGGGCTTCAGTTATCACTTTTTGATGGCGAAGGCATACTTCTGATTTTTGTCAAAGAACATCGGGTTCTCCCTCAGTAGGTTTTTGTTTTCAATGATAATGTGGTGAATTATACCACCAAAATTGGCTCTGTGATGAACTGCATAGTCATTACACTTCAGCAAAGATGTTTTCATCCATGCTGAAAGATGCATTTTTAATTATGTTGAAAACTGCATAGCTTTAGGGGAAACCTGTTCAAATTATCTCTAATCATCGCCTCTATGTTCTTAGTTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGGGTAACTATCGTTTCAACTTACAATTAGAATCTTGTAATTCCTTTTCCTGACGCTTTAGTGTTTCATAATCCTGTTTTCTTCTCCTTTGTGCTTTATAGAAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAA</genome_strand>
        <mrna_strand>TTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA..........................................................................................................................................ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG..................................................................................................AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAG-TACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCCTTTTAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705425" ref_strand="+" ref_description="SGN-E705425 [FA27AE01]">
      <seq>cgcttaaattcaactccctgctattccaaaaagtgttgtcaacaagctgtcaataaaggagactgcacgacgtcgttctgaaatctccgaattaccggtgaaagttccttagtttccggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgtttaagctcccttttcgaaacgcacagtcaacgacgacttcgcgttcgtcttcgcataatactcttcattaccgcagtcaacaacatcaatctctcggaaatacttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttgcttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactccagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaaccgtattcaagtttgtagagcatccagaaaataatgaaaaaccaatggaccagaagagcagagtgaagttcaagatcatgagcctcaaggtgaaaggaccgatggactatgtacctgagctgtttgaagagcaaaaggatcaagtagccgtagagcaaattctgcgggttatctttctcgatgtggaacgtcctagtcccactttggaaaaattgaagcgccagctggcggaggcagacgctgctcttgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="118118" stop="113852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117823" g_stop="117428" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117427" i_stop="115425" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115424" g_stop="115354" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="467" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115353" i_stop="115187" i_length="167">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115186" g_stop="115105" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="549" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115104" i_stop="114966" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114965" g_stop="114847" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="668" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114846" i_stop="114421" i_length="426">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114420" g_stop="114343" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="746" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114342" i_stop="114205" i_length="138">
            <donor d_prob="0.763" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114204" g_stop="114152" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="799" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E705425" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117823" e_stop="117428"/>
          <exon e_start="115424" e_stop="115354"/>
          <exon e_start="115186" e_stop="115105"/>
          <exon e_start="114965" e_stop="114847"/>
          <exon e_start="114420" e_stop="114343"/>
          <exon e_start="114204" e_stop="114152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTGGTTAGTAGATTATTTCTTTGCAAGGAAGTTCCTTTCCTTTTTAGCATGTCCTTCAGCACTTCCAGTTTCCGTGATAAAAGAAGCTGGTTTTGAGTCTGTTCTATACTTTTATTACATTAGGTCAATTGTTTCTTTCTGGGGGTTTGGTGGGCTGGGGGCTTCAGTTATCACTTTTTGATGGCGAAGGCATACTTCTGATTTTTGTCAAAGAACATCGGGTTCTCCCTCAGTAGGTTTTTGTTTTCAATGATAATGTGGTGAATTATACCACCAAAATTGGCTCTGTGATGAACTGCATAGTCATTACACTTCAGCAAAGATGTTTTCATCCATGCTGAAAGATGCATTTTTAATTATGTTGAAAACTGCATAGCTTTAGGGGAAACCTGTTCAAATTATCTCTAATCATCGCCTCTATGTTCTTAGTTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGA</genome_strand>
        <mrna_strand>CGCTTAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCC..........................................................................................................................................ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461394" ref_strand="+" ref_description="SGN-E461394 [cPRO-8-G6]">
      <seq>aaaaagtattgtcagctgtcaataaaggagacagcacgacgtcgttctgaaatctccgaatttccggcgaaagttccttaatttccggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgttcaagctcccttttcgaaacgcacagtcaacgacgactttgcgctcatcttcgcataatactcttcattaccgcagtcaacaacatcaatctctcggaattgcttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttacttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactctagcaagtctcacgtagctttcaagttccaaacaacagcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaactgtattcaagtttgtagagcatccagaaaataatgaaaaaccaatggaccagaagagcagagtaaagttcaagatcatgagcctcaaggtgaaaggaccgatggactatgtacctgagctgtttgaagagcaaaaggagcaagtagctgtagagcaaattctgcgggttatctttctcgatgtggaacgtcctagtccaactttggaaaaattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="118079" stop="113888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117796" g_stop="117428" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117427" i_stop="115425" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115424" g_stop="115354" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="436" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115353" i_stop="115187" i_length="167">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115186" g_stop="115105" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="518" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115104" i_stop="114966" i_length="139">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114965" g_stop="114847" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="637" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114846" i_stop="114421" i_length="426">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114420" g_stop="114343" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="715" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114342" i_stop="114205" i_length="138">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114204" g_stop="114187" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="733" r_length="18" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E461394" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117796" e_stop="117428"/>
          <exon e_start="115424" e_stop="115354"/>
          <exon e_start="115186" e_stop="115105"/>
          <exon e_start="114965" e_stop="114847"/>
          <exon e_start="114420" e_stop="114343"/>
          <exon e_start="114204" e_stop="114187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTGGTTAGTAGATTATTTCTTTGCAAGGAAGTTCCTTTCCTTTTTAGCATGTCCTTCAGCACTTCCAGTTTCCGTGATAAAAGAAGCTGGTTTTGAGTCTGTTCTATACTTTTATTACATTAGGTCAATTGTTTCTTTCTGGGGGTTTGGTGGGCTGGGGGCTTCAGTTATCACTTTTTGATGGCGAAGGCATACTTCTGATTTTTGTCAAAGAACATCGGGTTCTCCCTCAGTAGGTTTTTGTTTTCAATGATAATGTGGTGAATTATACCACCAAAATTGGCTCTGTGATGAACTGCATAGTCATTACACTTCAGCAAAGATGTTTTCATCCATGCTGAAAGATGCATTTTTAATTATGTTGAAAACTGCATAGCTTTAGGGGAAACCTGTTCAAATTATCTCTAATCATCGCCTCTATGTTCTTAGTTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAAAATTGAAG</genome_strand>
        <mrna_strand>AAAAAGTATTGT---CA-GCTGTCAATAAAGGAGACAGCACGACGTCGTTCTGAAATCTCCGAATTTCCGGCGAAAGTTCCTTAATTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTCAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTTGCGCTCATCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAATTGCTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTACTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCTAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACAGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACTG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTAAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCAAAAGGAGCAAGTAGCTGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA..........................................................................................................................................ACTTTGGAAAAATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543015" ref_strand="+" ref_description="SGN-E543015 [TUS-64-J20]">
      <seq>tgcatttccaaattcaactccctgctattccaaaaagtgttgtcaacaagctgtcaataaaggagactgcacgacgtcgttctgaaatctccgaattaccggtgaaagttccttagtttccggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgtttaagctcccttttcgaaacgcacagtcaacgacgacttcgcgttcgtcttcgcataatactcttcattaccgcagtcaacaacatcaatctctcggaaatacttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttgcttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactccagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaaccgtattcaagtttgtagagcatccagaaaataatgaaaaaccaatggaccagaagagcagagtgaagttcaagatcatgagcctcaaggtgaaaggaccgatggactatgtacctgagctgtttgaagagcaaaaggatcaagtagccgtagagcaaattctgcgggttatctttctcgatgtggaacgtcctagtccaactttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="118128" stop="114043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117828" g_stop="117428" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117427" i_stop="115425" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115424" g_stop="115354" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="471" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115353" i_stop="115187" i_length="167">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115186" g_stop="115105" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="553" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115104" i_stop="114966" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114965" g_stop="114847" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="672" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114846" i_stop="114421" i_length="426">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114420" g_stop="114343" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="750" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114342" i_stop="114205" i_length="138">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114204" g_stop="114195" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="760" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E543015" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117828" e_stop="117428"/>
          <exon e_start="115424" e_stop="115354"/>
          <exon e_start="115186" e_stop="115105"/>
          <exon e_start="114965" e_stop="114847"/>
          <exon e_start="114420" e_stop="114343"/>
          <exon e_start="114204" e_stop="114195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTGGTTAGTAGATTATTTCTTTGCAAGGAAGTTCCTTTCCTTTTTAGCATGTCCTTCAGCACTTCCAGTTTCCGTGATAAAAGAAGCTGGTTTTGAGTCTGTTCTATACTTTTATTACATTAGGTCAATTGTTTCTTTCTGGGGGTTTGGTGGGCTGGGGGCTTCAGTTATCACTTTTTGATGGCGAAGGCATACTTCTGATTTTTGTCAAAGAACATCGGGTTCTCCCTCAGTAGGTTTTTGTTTTCAATGATAATGTGGTGAATTATACCACCAAAATTGGCTCTGTGATGAACTGCATAGTCATTACACTTCAGCAAAGATGTTTTCATCCATGCTGAAAGATGCATTTTTAATTATGTTGAAAACTGCATAGCTTTAGGGGAAACCTGTTCAAATTATCTCTAATCATCGCCTCTATGTTCTTAGTTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAA</genome_strand>
        <mrna_strand>TGCATTTCC-AAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA..........................................................................................................................................ACTTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485820" ref_strand="+" ref_description="SGN-E485820 [cSTE-19-L23]">
      <seq>attcaactccctgctgttctaaaatgtattgtcaacacgctgtcaataaaggagacagcacgacgtcgttctgaaatctccgaatttccggcgaaagttccttaatttccggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgttcaagctcccttttcgaaacgcacagtcaacgacgactttgcgctcatcttcgcataatactcttcattaccgcagtcaacaacatccatctctcggaattgcttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttacttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactctagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaactgtattcaagtttgtagagcatccagaaaataaatgaaaaccaatggaccagaagagcagagtaaagttcaagatcatgagccctcagggtgaanggaccgatggactatgtacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="118116" stop="114551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117816" g_stop="117428" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117427" i_stop="115425" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115424" g_stop="115354" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="460" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115353" i_stop="115187" i_length="167">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115186" g_stop="115105" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="542" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115104" i_stop="114966" i_length="139">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114965" g_stop="114851" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="658" r_length="116" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E485820" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117816" e_stop="117428"/>
          <exon e_start="115424" e_stop="115354"/>
          <exon e_start="115186" e_stop="115105"/>
          <exon e_start="114965" e_stop="114851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAG-CCTCAAGGTGAAAGGACCGATGGACTATGTACCTGA</genome_strand>
        <mrna_strand>ATTCAACTCCCTGCTGTTCTAAAATGTATTGTCAACACGCTGTCAATAAAGGAGACAGCACGACGTCGTTCTGAAATCTCCGAATTTCCGGCGAAAGTTCCTTAATTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTCAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTTGCGCTCATCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCCATCTCTCGGAATTGCTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTACTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCTAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACTG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAAATGAAAACCAATGGACCAGAAGAGCAGAGTAAAGTTCAAGATCATGAGCCCTCAGGGTGAANGGACCGATGGACTATGTACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437521" ref_strand="+" ref_description="SGN-E437521 [cSTA-4-E11]">
      <seq>ccaaaattcaactccctgctgttctaaaaagtttgtcagctgtcaataaaggagacagcacgacgtcgtatctgaaatctccgaatttccggcgaaagttccttaattttcggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgttcaagctcccttttcgaaacgcacagtcaacgactactttgcgctcatcttcgcataatactcttcattaccgcagtcaacaacatcaatctctcggaattgcttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttacttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactctagcaagtctcacgtagctttcaagttccaaacaacagcacccaaaagctgtttcatgcgttctcccggagcaattctcgcccccggtgagagcatgattgcaactgttttcaagtttgtagagcatccagaaaataatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="118121" stop="114629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117821" g_stop="117428" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117427" i_stop="115425" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115424" g_stop="115354" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="461" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115353" i_stop="115187" i_length="167">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115186" g_stop="115105" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="543" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115104" i_stop="114966" i_length="139">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114965" g_stop="114929" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="580" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E437521" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117821" e_stop="117428"/>
          <exon e_start="115424" e_stop="115354"/>
          <exon e_start="115186" e_stop="115105"/>
          <exon e_start="114965" e_stop="114929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGT-TCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAA</genome_strand>
        <mrna_strand>CCAAAATTCAACTCCCTGCTGTTCTAAAAAGT-TTGT---C-AGCTGTCAATAAAGGAGACAGCACGACGTCGTATCTGAAATCTCCGAATTTCCGGCGAAAGTTCCTTAATTTTCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTCAAGCTCCCTTTTCGAAACGCACAGTCAACGACTACTTTGCGCTCATCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAATTGCTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTACTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCTAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACAGCACCCAAAAGCTGTTTCATGCGTTCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATGATTGCAACTG...........................................................................................................................................TTTTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302379" ref_strand="+" ref_description="SGN-E302379 [cLEW-27-O8]">
      <seq>gcatttccaaattcaactccctgctattccaaaaagtgttgtcaacaagctgtcaataaaggagactgcacgacgtcgttctgaaatctccgaattaccggtgaaagttccttagtttccggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgtttaagctcccttttcgaaacgcacagtcaacgacgacttcgcgttcgtcttcgcataatactcttcattaccgcagtcaacaacatcaatctctcggaaatacttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttgcttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactccagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaaccgtattcaagtttgtagagcatccagaaaataatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="118127" stop="114630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117827" g_stop="117428" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117427" i_stop="115425" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115424" g_stop="115354" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="470" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115353" i_stop="115187" i_length="167">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115186" g_stop="115105" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="552" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115104" i_stop="114966" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114965" g_stop="114930" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="588" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E302379" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117827" e_stop="117428"/>
          <exon e_start="115424" e_stop="115354"/>
          <exon e_start="115186" e_stop="115105"/>
          <exon e_start="114965" e_stop="114930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAA</genome_strand>
        <mrna_strand>GCATTTCC-AAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460509" ref_strand="+" ref_description="SGN-E460509 [cPRO-31-D5]">
      <seq>aaaaagtattgtcagctgtcaataaaggagacagcacgacgtcgttctgaaatctccgaatttccggcgaaagttccttaatttccggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgttcaagctcccttttcgaaacgcacagtcaacgacgactttgcgctcatcttcgcataatactcttcattaccgcagtcaacaacatcaatctctcggaattgcttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttacttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactctagcaagtctcacgtagctttcaagttccaaacaacagcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaactgtattncagtttgtagagcatccagaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="-" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="118079" stop="114636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117796" g_stop="117428" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117427" i_stop="115425" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115424" g_stop="115354" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="436" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115353" i_stop="115187" i_length="167">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115186" g_stop="115105" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="518" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115104" i_stop="114966" i_length="139">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114965" g_stop="114936" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="548" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="-" ref_id="SGN-E460509" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117796" e_stop="117428"/>
          <exon e_start="115424" e_stop="115354"/>
          <exon e_start="115186" e_stop="115105"/>
          <exon e_start="114965" e_stop="114936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATA</genome_strand>
        <mrna_strand>AAAAAGTATTGT---CA-GCTGTCAATAAAGGAGACAGCACGACGTCGTTCTGAAATCTCCGAATTTCCGGCGAAAGTTCCTTAATTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTCAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTTGCGCTCATCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAATTGCTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTACTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCTAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACAGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACTG...........................................................................................................................................TATTNCAGTTTGTAGAGCATCCAGAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722455" ref_strand="-" ref_description="SGN-E722455 [FC17BC11]">
      <seq>tttttttttttttttttttttttttttttttttttttttaaagctgtactagttgtagttcattcactgtgaactatcaaatatacatgccctagccagtttaaaaaactcactggtctttccttatatatatatatacaaaaaccctaaacccaagactcagatgagtgtgtatatacatatatgacattttgtacaaaagactcattttgatgagtcaaagcagagcccctgatgagattaaggaccccagcaggtcaagaacatgacagtcctaaaagacttttccgcctgtttaatttttttagcctttgctgcttttatcagagcattggtatcaacacccccagagaatttccatgtttgccttgaagatgatccagcaccagcaccccaagacgagtccttaagagttttgattccaccgtcaccttgtcttgttgcttgatgatcctttaccccttgatgaatcaccctcatcacaccttgatgcactttactgatcatgtaacaactagttttttttttttaatcaagacgattctgttttgtaaaatttccaagtgtaatggaacgatatatatagaggaactcatcaattcggccgattggccgccaatcgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="104770" stop="123521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120100" g_stop="120142" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.698"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120143" i_stop="122656" i_length="2514">
            <donor d_prob="0.000" d_score="0.70"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122657" g_stop="123211" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="598" r_length="555" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E722455" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722455" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="120100" e_stop="120142"/>
          <exon e_start="122657" e_stop="123211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCTTTCTAAACTTTTTATATTTTCTGTTTTTTCAAGATTCTAAGTTTAAGTTAAAAGTTTTCTTTGTTAAGTGGATATCACTACTTGTTATTCATTCTACGTAGTGGATTAAGTAAATGCAATTTGATTAGTGGATTAGGTTTCATAAATTCAAATTAAGTTGACTAATTCCATATTTCCATTAGTGGAAATGTAATTAATTCAGTCCAAGAAGGAAAAATAATGTCAAATATTCAAATTTTCTGCTGCTTAGACCAGCACAAATGCGTGTTTAATTTTTGTTTAAACTATTTCTACATGTGTTTCTTTCATTTTTTTTTTCAATGATCATTAATCCAAATCCAATTATGACTTGTTCTCTTCAGTAATTTTAGGATTGGATCTGACCGTTGGAACTTTTTGTCAAGATTATTGAAGAATGTGGACAAGTTACCTGAAAATGATTTTCGTTTTAAATATTCCCTTAATCCCCAAACTTATAGCCTAATCTTAAATATTTTAGGTTTGGCAAACATAAAAATTATGTTTGTTATGGCTATTAATATGTATATTTCTGCATACATATATAAAAGAATCAATTGTATAATATATTTCGGTATATAAATACAAAAGTATTAATTGTATAATATATGTTTTATAAATCAAGAAAGAGGGAAAGATAAGTAAAACTAGGTAGGAAAAAAATTGTATCTGTATAATTATAAGTGCATATGACGAAAATATATGTATTTGTATTTTATATATAATTTTCTCTCGTTTTATACAAACACAAACACAACTTATACATTTGTATTTATATATAGTGAGAGAGGCGAGCGAGATTCTATAGGGAGAGAAAAAGATATATATATATATATATATATATATATATATATATATACAGTTTTGTCTCGCTTTATACAAACAGAAACACATTTTATATATTTGTGTTTATATAAAGTGAGTGAGGCAAGAAAAAAACTGTCCAGTGAAAAATCGAGAATGGCAAGCAAGAAACTCAGACAAATGCTAATTGTTTACTACGTATTATAATTAAATCAAATTGTGAATATGATATAATTTGAATAAATAATTTGTTATTTTATATGATTTTTTCAATAATCAATGTTGATGTTAATAATTGTGGTTTGTGGCCTCGGTGGCCGAATAATGTTTACAATTTTGGGCTTATCTGATCTTTTTATTAGAGCAATTTATATGTACTTGTCAAAGCTTTATAATCTTCATGCTTGTATGAATATAATACTCGTGTCATAAGTTGTTTCAATGAAATTTGAGATGTGACAAAAGTAATAGAATTACTGTTTAGGGAAAATTGTATAGAATAGCAAATTAATAATTTAAAATAAATAAAGTAGTTAGGGTTTGATTTAATTGTGCTCCATAGCAAAAGTTAGCTAAAGTTTGCCAGACGTCTCTCTCCCAAAAATCTTGCTCGCCACTCTCCATTCTCGCTCGCCTCTCGCTTTATACACAGAAGTAAATATATATCTTCGTGTTATACATTTAATTATACAATTTACAAAATTTTTACTTCAAACATTGCAGAGTAAAAGGCCAACAAATTATACAATTGCAGTGAAATACAATTTTCTCTAGCTTTATACAACAGAAGTGTATATATTGTGTTTTTGTTTTTGTATAGAGCGAGAGAAAAACATATATATTCTTGCTATACACTTATAATTATGCAATATACATACATTTTAATTCGATTCAACTGTATGCAAAGCAAATTTTATAAAAATATTGTAACAAAATAGGCAGCGAATTATACAATTGTGCATTATACAATCGCAGTGACATAGGATAACGAATTATACAATTGTATATGTATAGTGAATTATATAGTTTTATGTTTGCTATGGAACGCAATTATGCAAACTTTGTTATAACATATAAATATGAATTTTTTTTTGCTTTATGTAAAAGCTGCCCTACTTTTTAACCCACGAAAACACTGTTTAAAAGAAAATTCACAAAAACAAAATTGAAAATATCGTTCCTCAACAAGACGGAGATAAAATTGGGCTAGAGGTTGGTCCAGCACACCATGCTACACACAAGGCCCAAATATATATATATATATATCTTCAAATAAAATAAAATTAAAAAAATTGGATTGTAAACCTAATGTTTTTTTAAAAAAAATATAGAATATGGTGTATGCTTACCATGAAAATGATAAGATACAAAATAAAATATTATTATTTATTTTTTATTATAAATAAGCAAAGACAAAAATAGAAAAAATTAAGATAATGATGTAATTATATCAAAATCAATCTATTCCTAAAATGATTATTATATGTACCCTACTTATATTATTTAGTTTTTCACCTGATATATGTTACTCCATATTAGAAATTGACTAATTTAAATTCGCGCTACATAATTAGAATTTTCTCTTTAAATCTGATACCTTTTGATTAAAAAAATAATACTTCATCTATTGCGTCATTTCAATTCTTCGTGCCCTAAATCTAAATAAATATTTTACTGAAAACTAATGAAATAACACAAATCAATAGCTAACAACAATCGAAAAAGCTGTACTAGTTGTAGTTCATTCACTGTGAACTATCAAATATACATGCACTAGCCAGTCTAAAAAACTCACTGGTCTTTCCTTATATATATATATACAAAAACCCTAAACCCAAGACTCAGATGAGTGTGTATATACATATATGACATTTTGTACAAAAGACTCATTTTGATGAGTCAAAGCAGAGCCACTGATGAGATTAAGGACCCCAGCAGGTCAAGAACATGACAGTCCTAAAAGACTCTTCCGCCTGTTTAATCTTCTTAGCCTTTGCTGCTTTTATCAGAGCATTGGTATCAACACCACCAGAGAATTTCCATGTCTGCCTTGAAGATGATCCAGCACCAGCACCACAAGACGAGTCCTTAAGAGTCTTGATTCCACCGTCACCTTGTCTTGTTGCTTGATGATCCTTTACCCCTTGATGAATCACCCTCATCACACCTTGATGCACTCTACTGATCATGTAACAACTAGTTTTTTTTTTTTAATCAAGACGATTCTGTTTTGTAAAATTTCCAAGTGTAATGGAACGATATATATAGAGGAACTCATGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACTAGTTGTAGTTCATTCACTGTGAACTATCAAATATACATGCCCTAGCCAGTTTAAAAAACTCACTGGTCTTTCCTTATATATATATATACAAAAACCCTAAACCCAAGACTCAGATGAGTGTGTATATACATATATGACATTTTGTACAAAAGACTCATTTTGATGAGTCAAAGCAGAGCCCCTGATGAGATTAAGGACCCCAGCAGGTCAAGAACATGACAGTCCTAAAAGACTTTTCCGCCTGTTTAATTTTTTTAGCCTTTGCTGCTTTTATCAGAGCATTGGTATCAACACCCCCAGAGAATTTCCATGTTTGCCTTGAAGATGATCCAGCACCAGCACCCCAAGACGAGTCCTTAAGAGTTTTGATTCCACCGTCACCTTGTCTTGTTGCTTGATGATCCTTTACCCCTTGATGAATCACCCTCATCACACCTTGATGCACTTTACTGATCATGTAACAACTAGTTTTTTTTTTTTAATCAAGACGATTCTGTTTTGTAAAATTTCCAAGTGTAATGGAACGATATATATAGAGGAACTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316287" ref_strand="+" ref_description="SGN-E316287 [cTOA-23-H24]">
      <seq>tccaccactttccaccattactcttcaagcaaacaaatttaacccaggtacatttcgcaaaaatagttgtacattccaggaataacaactaacaactacctgtcttgactccaatttcatagcctttatggatcttctacgttactccgcctcccgctatcctgcagctcatcttcaacttcccttccgtacgccacttcgccggcggttcgtcgccgttaggtcaagtttgagccttccgttcgcggagcagaaagctaagtattatagcgagctcgaagctgctgttgatgttgtcgagcgagcttgtcgtctctgcgttgacgtgaagaagtcactgttctcaagtgatggtaggattcttgagaaaaatgaccagaccccagtcaccattgcagattttggagtgcaggctttagttagcttggagatgaacaaactttttccctccatacctttggtggctgaagaggactctgcattcttgcgttcaaataatctggttggctcagtggttgatgttgtaaaggataaagcaactttaggagatgaagtaacagaagataatattttgaaagcaattgacagagggggaaaggatgcttatgtatttgcgcctgagccagccacttactggattctggatcctattgatggtacacgagggtttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="125491" stop="128566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125791" g_stop="126012" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126013" i_stop="126145" i_length="133">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126146" g_stop="126248" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="325" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126249" i_stop="126953" i_length="705">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126954" g_stop="127056" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="428" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127057" i_stop="127375" i_length="319">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127376" g_stop="127584" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="637" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="127585" i_stop="128230" i_length="646">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128231" g_stop="128266" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="673" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E316287" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125791" e_stop="126012"/>
          <exon e_start="126146" e_stop="126248"/>
          <exon e_start="126954" e_stop="127056"/>
          <exon e_start="127376" e_stop="127584"/>
          <exon e_start="128231" e_stop="128266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCACTTTCCACCATTACTCTTCAAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATATTTTTTTTCTTCAGTTGTTGAATTCGTATATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGGGTAAATTATACTGTATGTTCCTTTTTATTTACTGACTGCAGTTTCAGCTATCTAGTACTTCTCCATCACTCAAGAAAATAAGAAGGGATATTCATGGAAGTAAAATGATTAAGTTTATGAGTATAATTTTTGAAGAAGGATGAAATCACAATGTAGTTTTTGACAATATTGAAAATTATGGATATGATTTTTTGTGCTTATCCATTGGTTCACTTCAGTTCTCTTCTTTTTTTTAAAAAAAGAAAAATTGCCTGATAAAGTTTTTCCTTGGAGCTAAGATGAATTGTTTCTTGACTGGATTACATTCTTATTCTGATAGAGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGGGTGAGTTTCATGCTGTTTCCAAAGATATTCGCTAAGTTCATGTGATAAGAGATTAAAGTACTCCAAAGGCTTCAAGCTAAGGGAAAGTTCCTGAAGGGACTAGAATTCCTGAATTCATGTTGGGTTCGCTCTTTCACATTTTGTATGAAAAACACATTTGTCTAGTTGATGATCATTTGTTCAATTTTATGTTGAATATAGAATTTCCACGTTCTGAAGAATTCCAAAATTTGATTCTCTTTCTAGAATTTTGGTTAATTTAGAATTGTGTCATTAATATCTCCTGAGAAACATTTCAAGAGGTTATCGAACAGGTCATGGTGGGGGGGGGGGGGGGAAGGTTGGATGGATGGTAGAATATATGGAAACAGTTTCCTTCCCTTGGATAACCTTCGTTTAGTTGAAAATACATCTTCTTTTGTACATAAACTTTTACCAGACCAAGGGTAATATTTTTAAGGCCCTATTCACTTCTATCAATATGACATCAGGAAATACTTCCTTGTCTGTCTTTACTCTGTATTTTGTGATTAAAATAAGTTAACTTTTATCGTCCATGCCCTGAACAGCTGACAAAAAGGCATGTTTGCAGTTTATACTTGCATAGTTACTTGGGCTGCACTCATAAATTTCCAACCTCGTACAGATTCTGGATCCTATTGATGGTACACGAGGGTTTGTT</genome_strand>
        <mrna_strand>TCCACCACTTTCCACCATTACTCTTCAAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAG.....................................................................................................................................GTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG...............................................................................................................................................................................................................................................................................................................................AGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGATCCTATTGATGGTACACGAGGGTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447016" ref_strand="+" ref_description="SGN-E447016 [cSTA-24-I1]">
      <seq>cttcaagttaacaaatttaacccaggtacatttcgcagtaataggggtaccattccaagaataacaactaacaactacctgacttgactccaatttcattgcctttatggatcttctccgttactccccctcccgcttccctgcagctcatcctcaacttcccttccctaccccacttggccggcggttcgtcgccgttaggtcgagtttgagccttccgttcgtggagcagaaagacaagtattatagcgagctcgaagctgctgttgatgttgtcgaacgagcttgtcgtctctgcgttgatgtgaagaagtcactgttctcaagtgatggtaggattcttgagaaaaatgaccagaccccagtcaccattgcagattttggagtgcaggctttagttagcttggagatgaacagactttttccctccatccctctggtggctgaagaggactctgcattcttgcgttcaaataatctggttggctcagtggttgatgttgtaaaggataaagcaactttaggagatgaagtaacagaagataatattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="125513" stop="127821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125813" g_stop="126012" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126013" i_stop="126145" i_length="133">
            <donor d_prob="0.674" d_score="0.92"/>
            <acceptor a_prob="0.895" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126146" g_stop="126248" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="304" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126249" i_stop="126953" i_length="705">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126954" g_stop="127056" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="407" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127057" i_stop="127375" i_length="319">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127376" g_stop="127521" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="553" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E447016" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125813" e_stop="126012"/>
          <exon e_start="126146" e_stop="126248"/>
          <exon e_start="126954" e_stop="127056"/>
          <exon e_start="127376" e_stop="127521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTA-CATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATATTTTTTTTCTTCAGTTGTTGAATTCGTATATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGGGTAAATTATACTGTATGTTCCTTTTTATTTACTGACTGCAGTTTCAGCTATCTAGTACTTCTCCATCACTCAAGAAAATAAGAAGGGATATTCATGGAAGTAAAATGATTAAGTTTATGAGTATAATTTTTGAAGAAGGATGAAATCACAATGTAGTTTTTGACAATATTGAAAATTATGGATATGATTTTTTGTGCTTATCCATTGGTTCACTTCAGTTCTCTTCTTTTTTTTAAAAAAAGAAAAATTGCCTGATAAAGTTTTTCCTTGGAGCTAAGATGAATTGTTTCTTGACTGGATTACATTCTTATTCTGATAGAGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTG</genome_strand>
        <mrna_strand>CTTCAAGTTAACAAATTTAACCCAGGTACATTTCGCAGTAATAGGGGTACCATTCCAAGAATAACAACTAACAACTACCTGACTTGACTCCAATTTCATTGCCTTTATGGATCTTCTCCGTTACTCCCCCTCCCGCTTCCCTGCAGCTCATCCTCAACTTCCCTTCCCTACCCCACTTGGCCGGCGGTTCGTCGCCGTTAG.....................................................................................................................................GTCGAGTTTGAGCCTTCCGTTCGTGGAGCAGAAAGACAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAACGAGCTTGTCGTCTCTGCGTTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG...............................................................................................................................................................................................................................................................................................................................AGATGAACAGACTTTTTCCCTCCATCCCTCTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472986" ref_strand="+" ref_description="SGN-E472986 [cSTB-30-N3]">
      <seq>aagtaaacagatttaacccaggtccatttcgtagtaatagttgtacattccaggaataacaactaacaactacctgacttgactccaatttcattgcctttatggattttctccgttactccgcctcccgcttccctgcagctcatcctcaacttcccttccgtacgccacttggccggcggttcgtcgccgttaggtcgagtttgagccttccgttcgcggagcagaaaggcaagtattatagcgagctcgaagctgctgttgatgttgtcgaacgagcttgtcgtctctgcgttgatgtgaagaagtcactgttctcaagtgatggtaggattcttgagaaaaatgatcagaccccagtcaccattgcagattttggagtgcaggctttagttagcttggagatgaacagactttttccctccatccctctggtggctgaagaggactctgcattcttgcgttcaaataatctggttggctcagtggttgatgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="125517" stop="127772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125817" g_stop="126012" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126013" i_stop="126145" i_length="133">
            <donor d_prob="0.674" d_score="0.96"/>
            <acceptor a_prob="0.895" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126146" g_stop="126248" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="299" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126249" i_stop="126953" i_length="705">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126954" g_stop="127056" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="402" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127057" i_stop="127375" i_length="319">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127376" g_stop="127472" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="499" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E472986" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125817" e_stop="126012"/>
          <exon e_start="126146" e_stop="126248"/>
          <exon e_start="126954" e_stop="127056"/>
          <exon e_start="127376" e_stop="127472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATATTTTTTTTCTTCAGTTGTTGAATTCGTATATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGGGTAAATTATACTGTATGTTCCTTTTTATTTACTGACTGCAGTTTCAGCTATCTAGTACTTCTCCATCACTCAAGAAAATAAGAAGGGATATTCATGGAAGTAAAATGATTAAGTTTATGAGTATAATTTTTGAAGAAGGATGAAATCACAATGTAGTTTTTGACAATATTGAAAATTATGGATATGATTTTTTGTGCTTATCCATTGGTTCACTTCAGTTCTCTTCTTTTTTTTAAAAAAAGAAAAATTGCCTGATAAAGTTTTTCCTTGGAGCTAAGATGAATTGTTTCTTGACTGGATTACATTCTTATTCTGATAGAGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGT</genome_strand>
        <mrna_strand>AAGTAAACAGATTTAACCCAGGTCCATTTCGTAGTAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGACTTGACTCCAATTTCATTGCCTTTATGGATTTTCTCCGTTACTCCGCCTCCCGCTTCCCTGCAGCTCATCCTCAACTTCCCTTCCGTACGCCACTTGGCCGGCGGTTCGTCGCCGTTAG.....................................................................................................................................GTCGAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGGCAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAACGAGCTTGTCGTCTCTGCGTTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGATCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG...............................................................................................................................................................................................................................................................................................................................AGATGAACAGACTTTTTCCCTCCATCCCTCTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413974" ref_strand="+" ref_description="SGN-E413974 [STM-18-P21]">
      <seq>aagtaaacagatttaacccaggtccatttcgtagtaataagttgtacattccaggaaataacaactaacaactacctgacttgactccaatttcattgcctttatggattttctccgttactccgcctcccgcttccctgcagctcatcctcaacttcccttccgtacgccacttggccggcggttcgtcgccgttaggtcgagtttgagccttccgttcgcggagcagaaaggcaagtattatagcgagctcgaagctgctgttgatgttgtcgaacgagcttgtcgtctctgcgttgatgtgaagaagtcactgttctcaagtgatggtangattcttgagaaaaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="125517" stop="127305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125817" g_stop="126012" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126013" i_stop="126145" i_length="133">
            <donor d_prob="0.674" d_score="0.96"/>
            <acceptor a_prob="0.895" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126146" g_stop="126248" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="301" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126249" i_stop="126953" i_length="705">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126954" g_stop="127005" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="353" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E413974" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125817" e_stop="126012"/>
          <exon e_start="126146" e_stop="126248"/>
          <exon e_start="126954" e_stop="127005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAAT-AGTTGTACATTCCAGG-AATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATATTTTTTTTCTTCAGTTGTTGAATTCGTATATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACC</genome_strand>
        <mrna_strand>AAGTAAACAGATTTAACCCAGGTCCATTTCGTAGTAATAAGTTGTACATTCCAGGAAATAACAACTAACAACTACCTGACTTGACTCCAATTTCATTGCCTTTATGGATTTTCTCCGTTACTCCGCCTCCCGCTTCCCTGCAGCTCATCCTCAACTTCCCTTCCGTACGCCACTTGGCCGGCGGTTCGTCGCCGTTAG.....................................................................................................................................GTCGAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGGCAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAACGAGCTTGTCGTCTCTGCGTTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTANGATTCTTGAGAAAAATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412347" ref_strand="+" ref_description="SGN-E412347 [STM-16-K7]">
      <seq>tttcgtagtaatagttgtacattccaggaataacaactaacaactacctgacttgactccaatttcattgcctttatggattttctccgttactccgcctcccgcttccctgcagctcatcctcaacttcccttccgtacgccacttggccggcggttcgtcgccgttaggtctcccacagccgacacttctctgcatatcttttttttcttcagttattgaattcatataattcgacctcaattagtttgagactgagacacaaattgattgatatatgagtgtgctttttcttcttccaggtcgagtttgagccttccgttcgcggagcagaaaggcaagtattatagcgagctcgaagctgctgttgatgttgtcgaacgagcttgtcgtctctgcgttgatgtgaagaagtcactgttctcaagtgatggtaggattcttgagaaaaatgatcagaccccagtcaccattgcagattttggagtgcaggctttagttagcttggagatgaacagactttttccctccatccctctggtggctgaagaggactctgcattcttgcgttcaaataatctggttggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="125543" stop="127757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125843" g_stop="126248" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126249" i_stop="126953" i_length="705">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126954" g_stop="127056" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="508" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127057" i_stop="127375" i_length="319">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127376" g_stop="127457" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="590" r_length="82" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E412347" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125843" e_stop="126248"/>
          <exon e_start="126954" e_stop="127056"/>
          <exon e_start="127376" e_stop="127457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATA--TTTTTTTTCTTCAGTTGTTGAATTCGTAT-ATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGGGTAAATTATACTGTATGTTCCTTTTTATTTACTGACTGCAGTTTCAGCTATCTAGTACTTCTCCATCACTCAAGAAAATAAGAAGGGATATTCATGGAAGTAAAATGATTAAGTTTATGAGTATAATTTTTGAAGAAGGATGAAATCACAATGTAGTTTTTGACAATATTGAAAATTATGGATATGATTTTTTGTGCTTATCCATTGGTTCACTTCAGTTCTCTTCTTTTTTTTAAAAAAAGAAAAATTGCCTGATAAAGTTTTTCCTTGGAGCTAAGATGAATTGTTTCTTGACTGGATTACATTCTTATTCTGATAGAGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTC</genome_strand>
        <mrna_strand>TTTCGTAGTAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGACTTGACTCCAATTTCATTGCCTTTATGGATTTTCTCCGTTACTCCGCCTCCCGCTTCCCTGCAGCTCATCCTCAACTTCCCTTCCGTACGCCACTTGGCCGGCGGTTCGTCGCCGTTAGGTCTCCCACAGCCGACACTTCTCTGCATATCTTTTTTTTCTTCAGTTATTGAATTCATATAATTCGACCTCAATTAGTTTGAGACTGAGACACA-A---ATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCGAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGGCAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAACGAGCTTGTCGTCTCTGCGTTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGATCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG...............................................................................................................................................................................................................................................................................................................................AGATGAACAGACTTTTTCCCTCCATCCCTCTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470458" ref_strand="+" ref_description="SGN-E470458 [cSTB-18-G8]">
      <seq>tttcgtagtaatagttgtacattccaggaataacaactaacaactacctgacttgactccaatttcattgcctttatggattttctccgttactccgcctcccgcttccctgcagctcatcctcaacttcccttccgtacgccacttggccggcggttcgtcgccgttaggtctcccacagccgacacttctctgcatatcttttttttcttcagttattgaattcatataattcgacctcaattagtttgagactgagacacaaattgattgatatatgagtgtgctttttcttcttccaggtcgagtttgagccttccgttcgcggagcagaaaggcaagtattatagcgagctcgaagctgctgttgatgttgtcgaacgagcttgtcgtctctgcgttgatgtgaagaagtcactgttctcaagtgatggtaggattcttgagaaaaatgatcagaccccagtcaccattgcagattttggagtgcaggctttagttagcttggagatgaacagactttttccctccatccctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="125543" stop="127361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125843" g_stop="126248" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126249" i_stop="126953" i_length="705">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126954" g_stop="127056" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="508" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E470458" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125843" e_stop="126248"/>
          <exon e_start="126954" e_stop="127056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATA--TTTTTTTTCTTCAGTTGTTGAATTCGTAT-ATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG</genome_strand>
        <mrna_strand>TTTCGTAGTAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGACTTGACTCCAATTTCATTGCCTTTATGGATTTTCTCCGTTACTCCGCCTCCCGCTTCCCTGCAGCTCATCCTCAACTTCCCTTCCGTACGCCACTTGGCCGGCGGTTCGTCGCCGTTAGGTCTCCCACAGCCGACACTTCTCTGCATATCTTTTTTTTCTTCAGTTATTGAATTCATATAATTCGACCTCAATTAGTTTGAGACTGAGACACA-A---ATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCGAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGGCAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAACGAGCTTGTCGTCTCTGCGTTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGATCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476136" ref_strand="+" ref_description="SGN-E476136 [cSTB-43-O4]">
      <seq>cttccctgcagctcatcctcagcttccctttcgtacgccacttcgccggcggttcgtcgccgttaggtcgagtttgagccttccgttcgcggagcagaaagccaagtattatagcgagctcgaagctgctgttgatgttgtcgagcgagcttgtcgtctctgcgttgacgtgaagaagtcactgttctcaagtgatggtagaattcttgagaaaaatgaccagaccccagtcaccattgcagattttggagtgcaggctttagttagcttggagatgaacaaactttttccctccatacctttggtggctgaagaggactctgcattcttgcgttcaaataatctggttggctcagtggttgatgttgtaaaggaaaaagcaactttaggagatgaagtaacagaagataatattttgaaagcaattgacagagggggaaaggatgcttatgtatttgcgcctgagccagccacttactggattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="125647" stop="127886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125947" g_stop="126012" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126013" i_stop="126145" i_length="133">
            <donor d_prob="0.674" d_score="0.94"/>
            <acceptor a_prob="0.895" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126146" g_stop="126248" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="169" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126249" i_stop="126953" i_length="705">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126954" g_stop="127056" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="272" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127057" i_stop="127375" i_length="319">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127376" g_stop="127584" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="481" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="127585" i_stop="127847" i_length="263">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127848" g_stop="127854" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="487" r_length="6" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E476136" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125947" e_stop="126012"/>
          <exon e_start="126146" e_stop="126248"/>
          <exon e_start="126954" e_stop="127056"/>
          <exon e_start="127376" e_stop="127584"/>
          <exon e_start="127848" e_stop="127854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATATTTTTTTTCTTCAGTTGTTGAATTCGTATATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGGGTAAATTATACTGTATGTTCCTTTTTATTTACTGACTGCAGTTTCAGCTATCTAGTACTTCTCCATCACTCAAGAAAATAAGAAGGGATATTCATGGAAGTAAAATGATTAAGTTTATGAGTATAATTTTTGAAGAAGGATGAAATCACAATGTAGTTTTTGACAATATTGAAAATTATGGATATGATTTTTTGTGCTTATCCATTGGTTCACTTCAGTTCTCTTCTTTTTTTTAAAAAAAGAAAAATTGCCTGATAAAGTTTTTCCTTGGAGCTAAGATGAATTGTTTCTTGACTGGATTACATTCTTATTCTGATAGAGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGGGTGAGTTTCATGCTGTTTCCAAAGATATTCGCTAAGTTCATGTGATAAGAGATTAAAGTACTCCAAAGGCTTCAAGCTAAGGGAAAGTTCCTGAAGGGACTAGAATTCCTGAATTCATGTTGGGTTCGCTCTTTCACATTTTGTATGAAAAACACATTTGTCTAGTTGATGATCATTTGTTCAATTTTATGTTGAATATAGAATTTCCACGTTCTGAAGAATTCCAAAATTTGATTCTCTTTCTAGAATTTTGGTTAATTTAGAATTGTG</genome_strand>
        <mrna_strand>CTTCCCTGCAGCTCATCCTCAGCTTCCCTTTCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAG.....................................................................................................................................GTCGAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCCAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGAATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG...............................................................................................................................................................................................................................................................................................................................AGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGAAAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGG.......................................................................................................................................................................................................................................................................-ATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433131" ref_strand="+" ref_description="SGN-E433131 [STM-58-E9]">
      <seq>ggaaatctttacccttgtcaggtttatttgatgcaaaaacagactctgagaacataagagaagggaacatacttcttctgtctgcatgctgtgggagtttgtgcaaatatctgatggtggcttctggtagagcatcggtttacattcaggggaagaaggcgacatctattatcaaggtctgggaccatgctgttggaatcatatgtgtccatgaagctggagggaaggtgactgactgggaaggaagttcacttgattttgcagcagatcaaactgaacggagactcatctttccttcaggcggtgttcttgtaactaatgggagcttacatagcaagattattggaatgatctcttcaaattcatcagttctttgacattctttttggcattattgtgacaaatcaatagtcagatactaatgaagatttccgccaattcatcaattgttaatgatacttgcattcttttgacgaatcacagcatatagcagtatacatatcaatgtctctccgttttcttcctcctcgtagtcatcagtatctctctgttgtttctcatcaatacttgtatctttcctctttcggtctctatggacagataatatactgaaatggtgtggagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="129037" stop="137171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129337" g_stop="129433" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129434" i_stop="130649" i_length="1216">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130650" g_stop="130728" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="176" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130729" i_stop="130797" i_length="69">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130798" g_stop="130848" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="227" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130849" i_stop="136512" i_length="5664">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136513" g_stop="136855" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="569" r_length="342" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="633"/>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E433131" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129337" e_stop="129433"/>
          <exon e_start="130650" e_stop="130728"/>
          <exon e_start="130798" e_stop="130848"/>
          <exon e_start="136513" e_stop="136855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATCTTTACCCTTGTCAGGTTTATTTGATGCAAAAACGGACTCTGAGAACATAGGAGAAGGGAACATACTTCTTCTGTCTGCATGCTGTGGGAGGTGAATCATTCTTCTCAATTTTTTTTCCTCATATTCTTAACATACGTGAACCTAGATAATTATGAAATGATACGTAGTGATCTGATGTGAAAAGAAAGGATGCTTAGATTTGTGGTGTGAAATCTTTCTTTCCTTCTGTTCGCAGTCGTGAAAGTTTTTACCTCTATAGGGCTCCAATTTGGTTGATGAGATTCAATACAGAGGGGATTGATGATGAAAATAAAAATAAATGGGATACAATGATTTCCTTTGCAAATTGGACCTAGATAAAGATTGGGCTGGGGAAAGGTTGAGGTGATCAATCAAGAGCATCGTTCTAGGATTTCATTTGTTCCAGCAAGTATTAGCTTGCTTTATCTTTTAAGTTGCTTCACTTGTTCTAGGAATGCAAGCTTGCTTTCTCTTCTAAGTAATTGCAGTTGTTCTGGGAATGCCTTTACTATGATGCCCAACAACTCTTTTCTTACAGTAGGCTAGGCTGGTAAAACTTTTTGGTGCCTGTGAGTTGAACATCACTCAGTAGATACATATTCTGTAAACTGCAGGTCATGGTCTTGTAGTTACTGAGTAAGTATGTTCATTGCGTCTTGATGATGTGCAGTTCAGCAACATGAAGTTTTCTGCTGGCTTTGTGCATTATTGGAATGTTATTCAGTACCTTAAAAAATTAAAGCTGCTTGCGGTTGCATAACCTCTAATTTTGTCTTCATTTTCCCCCTTGTATTTGACTCGAAAAAATATAGCATGTGCTGTTGTTAGATCTGAAAACACACAACCTGCGGTTCTTCTTAGTTTGTACATATACTAATCCCACACCATTCTCTTATATATGTTTATGTTTAGAATTTGATGAGGCATTGTAACATCACAAACCTCTTCTCCAAATGAAACTAGCTTTATGATAAACTTATGCTTTGAAGTTGGAATTTGGACTGGCACTCGGCAACAATCGTCAACTTAATACAGAAGAGGCTTGTCATTCACATCCAGAAGAGATTGAGTGCTCTATTTAATACTTTAGGAAACAGAGTGCCCTCAGAACCATTCTTCAAGTGATTATAAAATTCATTTCCCTTTTAGCCTGAACAGCTGAGTTGTAATTACTTTTGTATTGTCTTCTTTCTTCTTCTTTTACGGCCGCAATCAAATTAGTATTTCAATTTCATGATGGTTTTTGCACATTTGTTCTATTCAATTTTTGTTTCTAAATTTACAGTTTGTGCAAATATCTGATGGTGGCTTCTGGTAGAGCATCAGTTTACATTCAGGGGAAGAAGGCGACATCTATTATCAAGGTAATACTATCTTCTCGAGATTTTATAAGATTAGTGGAGCAGTATGATGCTCATATATGTTGAATGTAGGTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAGGTATGCATTTCTCTGTTGGTTTCTTTTTTGACATACCTTCTATACCTCTAATTGCCTGCCAACAGTTGCATCTTACAACCAGTTCTAAGAGAAGTCAGTGCTGCTGATATATCATTTATTTAACTACACAAACAGTTGTCAACTATATTGCATGTTATCAACACGCTTTTCGTTTTTTTTTCCTTAATAAAAAGAATTAAGTCATGTAAAGTACACCCTCTGGTATTGCAAATTCGAAGATATAGCTTTTATCTTTTCCTTTTTAGTCTAGATATAGTATTTTGAAGGCTTATCATCACTGTTTTAAAGGACTTTTCTTTGAAAAGTCAAATTCTGGAGGTTGATTCTCTTGCTTGACTGATTCATGCTTTGATTGGCTTTGAAAAATTATATTATCTGAAGAATTGAGTGAGGGTCCTAAATAGTGATTCATGAAACTTAAAATTCCATGTTAGAGGCTCGTTTTACTTGTGAAGAATCACAAAGTGACAAGAGGCTCGTTTTATAGTTTTATTTCTTGTTACTTTAATTCTTAAACTTTCTCGTATGTTTAAAAAAATGAAAGATGTGGGACACTGCAAGAGATAGCAGCAACTGGAAAAGAATGTGTTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAAATTGGTATCAGAGCCTCTCGGTTAATCGGTGTTCTTGGAGAATTCGAGATGTCTGCTTTGAACGTGAAAATCGACAAATTCACAGGGAGGAACAGTTTCAGTTTATGGCAGATCAAGATGCGGGCCTTGTTGAAACAGCAAGGCTTCTGGGCGCCGTTGTCGAAAGACAAGAACGCCGTCGTTACTCCTGAGATGGCGATTCTGGAGGAAAAGGCGCACTCGACGATCATGCTGTGTCTCGCGGATGACGTCATCACGGAGGTCTCGGATGAAGAGACTGCTGCTGGTCTGTGGTTGAAGCTGGAGAGTTTGTACATGACAAAATCTCTAACCAACAAGCTGCTTCTGAAACAACGTCTATTCGGTTTACGAATGGCTGAAGGTACACAACTCAGGGAACACTTAGAGCAATTGAATACTTTGTTATTAGAATTGCGTAATATCGATGTGAAGATCGAGGATGAAGATGCTGCCCTGATTCTGTTAGTATCTCTCCCAATGTCGTTTGAGAATTTTGTTCAATCGTTCATTGTTGGGAAAGATACTGTGTCACTGGAAGAAGTCAGATCAGCCCTTCATAGCAGGGAATTACGGCATAAGGCTAACGGCACAAGTACGGACATACAGCCTTCCGGTCTGTTCACCAGTAGTGGAAAGGGAAGGAAAAACGGCGGAAAGAAAAATAAGCCGATGTCGAAGGGTGCAAAGCCGGATGATGTTTGTAATTACTGCAAGGAGAAGGGACATTGGAAATTTGATTGTCCGAAGAAGAAGAAGCAATCGGAAAAACAATCAGTGTCTGCTGCTGTTGCTGAAGAAGACACCAATTCTGAAGAAGATATTGCCCTAGTTGCGGATGAGCACACTCATCATTCAGATGTGTGGGTTCTTGATTCTGGGGCATCCTATCACATCTGTTCTAGGAGAGAGTGGTTCACGACTTATGAGCAGGTAGACGGAGGCAGCATCTCGATGGCCAACAGTTCTGTCTGCAAGGTGGTTGGGACAGGCTCGATCAAGATAAGGACACATGACGGTAGCTTCTGCACATTGAACGAGGTCAGGCACGTTCCATTGATGACGAAAAATCTGATATCTCTCAGTCTTTTGGACAGCAAGGGATTCAGCTGGTCGGGAAAAGATGGAGTCTTGCGGGTCTGGAAGGGTTCAAATTTGATTCTGAAAGGTGTCATGCGTGGTACTTTGTATTTTCTACAAGGTTCCACGGTTACAGGTTCAGCCCATGTTGCATCGTCAGAATTTCACCAGAAGGATATGACTAAGTTATGGCACATGAGACTTGGTCATATGGGTGAAAGAGGGATGCAAATTCTGTCAAAGGAGGATTTACTTGCTGGTCATAAGGTTAAGAGCCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGTGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGCTGGAATTTTGTTGGTCTGAATTTGATCAATTCTGTAAGGATGAAGGGATTGCTCGACATCGCACTGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCTGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTTGCAACCTACAGTGACTTTGTCTACTACGGAAGCGGAGTACATGGCCTTGACAGAGGCTGCAAAAGAAGGGATTTGGTTGAAAGGGCTGGTTAGTGATCTTGGTCTGCATCATGATCAGGCTACGGTGTATTGTGACAGTTTGAGCGCAATTTGTCTAGCCAAGGATCAAGTCCATCATGAGAGAACCAAGCATATCGACGTAAGGTATCATTTTCTGAGAAGTGAGAAGAGAATCAAGGTGAAGAAAGTAGGAACTGCTGATAATCCTGCTGATATGTTCACAAAGCCGGTTCCACAGAGCAAGTTTCAACACTGTTTGGACTTGCTCAACATCAGAAGCTGTTAATTGCCCTGTGGGGCAACTCTGAGGAAGAGGGGGAGGCCTGGCACTATCATAGTGCGTCTGAAGAATCTGTTCGGAGAATTCAAGTCAAGGTGGAGATTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAGTGTTATCCTACATTACACCATCTGCTGCTTTCCACTTATCTGCTAACTGAAAAGTTGTTCACAACTTCATATCCAGGCATTTATATTTTGTGACGGCTGACACTAATTCATGCCTTGTTTTGTATTCACTGGCATCAATTTTCTATTTTTTTATGTTCATCTACATAATTTTTCTGCATGTGACATTGCCACTTGGACCCAAAGCAGAGGCCCACCTTTTAAGAAGCTTTGATCTTTGTCTTTGATTCTACTCCTGTTTATGACTCTGACTTTATCCTATATTCTTCAACTTATGCATTATAGTAATTGAATGTGGATGATTCATTCATAAAAGATGAGCAAGAACTAGATTGCTCAAATTTCCTGGTTATTTACTGTGCACCTTACTTGTCAGGTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGC-TTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCATTTTCTTCCTCCTCGTACTCATCAGTATCTCTCTGTTGTTTCTCATAAATACCT</genome_strand>
        <mrna_strand>GGAAATCTTTACCCTTGTCAGGTTTATTTGATGCAAAAACAGACTCTGAGAACATAAGAGAAGGGAACATACTTCTTCTGTCTGCATGCTGTGGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCAAATATCTGATGGTGGCTTCTGGTAGAGCATCGGTTTACATTCAGGGGAAGAAGGCGACATCTATTATCAAG.....................................................................GTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTAACTAATGGGAGCTTACATAGCAAGATTATTGGAATGATCTCTTCAAATTCATCAGTTCTTTGACATTCTTTTTGGCATTATTGTGAC-AAATCAATAGTCAGATACTAATGAAGATTTCCGCCAATTCATCAATTG-TTAATGATACTTGCATTCTTTTGACGAATCACAGCATATAGCAGTATACATATCAATGTCTCTCCGTTTTCTTCCTCCTCGTAGTCATCAGTATCTCTCTGTTGTTTCTCATCAATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417843" ref_strand="-" ref_description="SGN-E417843 [STM-26-A8]">
      <seq>atggtggcttctggtagagcatcggtttacattcaggggaagaaggcgacatctattatcaaggtctgggaccacgctgttggaatcatatgtgtccatgaagctggagggaaggtgactgactgggaaggaagttcacttgattttgcagcagatcaaactgaacggagactcatctttccttcaggcggtgttcttgttactaatgggagcttacatagcaagattattggaatgatctcttcaaattcatcagttctttgacattctttttggcattattgtgacaaatcaatagtcagatactaatgaagatttccgccaattcatcaattgttaatgacacttgcattcttttgacgaatcacagcatatagcagtgttatatcaatgtctctccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="130366" stop="137086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130666" g_stop="130728" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130729" i_stop="130797" i_length="69">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130798" g_stop="130848" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="114" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130849" i_stop="136512" i_length="5664">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136513" g_stop="136802" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="402" r_length="288" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E417843" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417843" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="130666" e_stop="130728"/>
          <exon e_start="130798" e_stop="130848"/>
          <exon e_start="136513" e_stop="136802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGGCTTCTGGTAGAGCATCAGTTTACATTCAGGGGAAGAAGGCGACATCTATTATCAAGGTAATACTATCTTCTCGAGATTTTATAAGATTAGTGGAGCAGTATGATGCTCATATATGTTGAATGTAGGTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAGGTATGCATTTCTCTGTTGGTTTCTTTTTTGACATACCTTCTATACCTCTAATTGCCTGCCAACAGTTGCATCTTACAACCAGTTCTAAGAGAAGTCAGTGCTGCTGATATATCATTTATTTAACTACACAAACAGTTGTCAACTATATTGCATGTTATCAACACGCTTTTCGTTTTTTTTTCCTTAATAAAAAGAATTAAGTCATGTAAAGTACACCCTCTGGTATTGCAAATTCGAAGATATAGCTTTTATCTTTTCCTTTTTAGTCTAGATATAGTATTTTGAAGGCTTATCATCACTGTTTTAAAGGACTTTTCTTTGAAAAGTCAAATTCTGGAGGTTGATTCTCTTGCTTGACTGATTCATGCTTTGATTGGCTTTGAAAAATTATATTATCTGAAGAATTGAGTGAGGGTCCTAAATAGTGATTCATGAAACTTAAAATTCCATGTTAGAGGCTCGTTTTACTTGTGAAGAATCACAAAGTGACAAGAGGCTCGTTTTATAGTTTTATTTCTTGTTACTTTAATTCTTAAACTTTCTCGTATGTTTAAAAAAATGAAAGATGTGGGACACTGCAAGAGATAGCAGCAACTGGAAAAGAATGTGTTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAAATTGGTATCAGAGCCTCTCGGTTAATCGGTGTTCTTGGAGAATTCGAGATGTCTGCTTTGAACGTGAAAATCGACAAATTCACAGGGAGGAACAGTTTCAGTTTATGGCAGATCAAGATGCGGGCCTTGTTGAAACAGCAAGGCTTCTGGGCGCCGTTGTCGAAAGACAAGAACGCCGTCGTTACTCCTGAGATGGCGATTCTGGAGGAAAAGGCGCACTCGACGATCATGCTGTGTCTCGCGGATGACGTCATCACGGAGGTCTCGGATGAAGAGACTGCTGCTGGTCTGTGGTTGAAGCTGGAGAGTTTGTACATGACAAAATCTCTAACCAACAAGCTGCTTCTGAAACAACGTCTATTCGGTTTACGAATGGCTGAAGGTACACAACTCAGGGAACACTTAGAGCAATTGAATACTTTGTTATTAGAATTGCGTAATATCGATGTGAAGATCGAGGATGAAGATGCTGCCCTGATTCTGTTAGTATCTCTCCCAATGTCGTTTGAGAATTTTGTTCAATCGTTCATTGTTGGGAAAGATACTGTGTCACTGGAAGAAGTCAGATCAGCCCTTCATAGCAGGGAATTACGGCATAAGGCTAACGGCACAAGTACGGACATACAGCCTTCCGGTCTGTTCACCAGTAGTGGAAAGGGAAGGAAAAACGGCGGAAAGAAAAATAAGCCGATGTCGAAGGGTGCAAAGCCGGATGATGTTTGTAATTACTGCAAGGAGAAGGGACATTGGAAATTTGATTGTCCGAAGAAGAAGAAGCAATCGGAAAAACAATCAGTGTCTGCTGCTGTTGCTGAAGAAGACACCAATTCTGAAGAAGATATTGCCCTAGTTGCGGATGAGCACACTCATCATTCAGATGTGTGGGTTCTTGATTCTGGGGCATCCTATCACATCTGTTCTAGGAGAGAGTGGTTCACGACTTATGAGCAGGTAGACGGAGGCAGCATCTCGATGGCCAACAGTTCTGTCTGCAAGGTGGTTGGGACAGGCTCGATCAAGATAAGGACACATGACGGTAGCTTCTGCACATTGAACGAGGTCAGGCACGTTCCATTGATGACGAAAAATCTGATATCTCTCAGTCTTTTGGACAGCAAGGGATTCAGCTGGTCGGGAAAAGATGGAGTCTTGCGGGTCTGGAAGGGTTCAAATTTGATTCTGAAAGGTGTCATGCGTGGTACTTTGTATTTTCTACAAGGTTCCACGGTTACAGGTTCAGCCCATGTTGCATCGTCAGAATTTCACCAGAAGGATATGACTAAGTTATGGCACATGAGACTTGGTCATATGGGTGAAAGAGGGATGCAAATTCTGTCAAAGGAGGATTTACTTGCTGGTCATAAGGTTAAGAGCCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGTGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGCTGGAATTTTGTTGGTCTGAATTTGATCAATTCTGTAAGGATGAAGGGATTGCTCGACATCGCACTGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCTGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTTGCAACCTACAGTGACTTTGTCTACTACGGAAGCGGAGTACATGGCCTTGACAGAGGCTGCAAAAGAAGGGATTTGGTTGAAAGGGCTGGTTAGTGATCTTGGTCTGCATCATGATCAGGCTACGGTGTATTGTGACAGTTTGAGCGCAATTTGTCTAGCCAAGGATCAAGTCCATCATGAGAGAACCAAGCATATCGACGTAAGGTATCATTTTCTGAGAAGTGAGAAGAGAATCAAGGTGAAGAAAGTAGGAACTGCTGATAATCCTGCTGATATGTTCACAAAGCCGGTTCCACAGAGCAAGTTTCAACACTGTTTGGACTTGCTCAACATCAGAAGCTGTTAATTGCCCTGTGGGGCAACTCTGAGGAAGAGGGGGAGGCCTGGCACTATCATAGTGCGTCTGAAGAATCTGTTCGGAGAATTCAAGTCAAGGTGGAGATTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAGTGTTATCCTACATTACACCATCTGCTGCTTTCCACTTATCTGCTAACTGAAAAGTTGTTCACAACTTCATATCCAGGCATTTATATTTTGTGACGGCTGACACTAATTCATGCCTTGTTTTGTATTCACTGGCATCAATTTTCTATTTTTTTATGTTCATCTACATAATTTTTCTGCATGTGACATTGCCACTTGGACCCAAAGCAGAGGCCCACCTTTTAAGAAGCTTTGATCTTTGTCTTTGATTCTACTCCTGTTTATGACTCTGACTTTATCCTATATTCTTCAACTTATGCATTATAGTAATTGAATGTGGATGATTCATTCATAAAAGATGAGCAAGAACTAGATTGCTCAAATTTCCTGGTTATTTACTGTGCACCTTACTTGTCAGGTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGC-TTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCAT</genome_strand>
        <mrna_strand>ATGGTGGCTTCTGGTAGAGCATCGGTTTACATTCAGGGGAAGAAGGCGACATCTATTATCAAG.....................................................................GTCTGGGACCACGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTTACTAATGGGAGCTTACATAGCAAGATTATTGGAATGATCTCTTCAAATTCATCAGTTCTTTGACATTCTTTTTGGCATTATTGTGAC-AAATCAATAGTCAGATACTAATGAAGATTTCCGCCAATTCATCAATTG-TTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGCAGTGT-TATATCAATGTCTCTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378230" ref_strand="+" ref_description="SGN-E378230 [TUS-45-I6]">
      <seq>agttcagggagaagaaggcgacatctattatcaaggtcttcgaccatgctgttggaatcatatgtgtccatgaagctggagggaaggtgactgactgggaaggaagttcacttgattttgcagcagatcaaactgaacggagactcatctttccttcaggcggtgttcttgtgactaatgggagcttacatagcaagattatcgaaatgatctcttcaaattcatcagttctttgacaggcttttggcattattgtgacaaaatcaatagtcagatactaatgaagatttcctccattcatcatttgtttaatgacacttgcattcttttgacgaatcacagcatatagaagtatacatatcaatgtctctccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="130397" stop="137104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130695" g_stop="130728" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130729" i_stop="130797" i_length="69">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130798" g_stop="130848" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="86" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130849" i_stop="136512" i_length="5664">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136513" g_stop="136803" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="376" r_length="290" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E378230" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130695" e_stop="130728"/>
          <exon e_start="130798" e_stop="130848"/>
          <exon e_start="136513" e_stop="136803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCAGGG-GAAGAAGGCGACATCTATTATCAAGGTAATACTATCTTCTCGAGATTTTATAAGATTAGTGGAGCAGTATGATGCTCATATATGTTGAATGTAGGTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAGGTATGCATTTCTCTGTTGGTTTCTTTTTTGACATACCTTCTATACCTCTAATTGCCTGCCAACAGTTGCATCTTACAACCAGTTCTAAGAGAAGTCAGTGCTGCTGATATATCATTTATTTAACTACACAAACAGTTGTCAACTATATTGCATGTTATCAACACGCTTTTCGTTTTTTTTTCCTTAATAAAAAGAATTAAGTCATGTAAAGTACACCCTCTGGTATTGCAAATTCGAAGATATAGCTTTTATCTTTTCCTTTTTAGTCTAGATATAGTATTTTGAAGGCTTATCATCACTGTTTTAAAGGACTTTTCTTTGAAAAGTCAAATTCTGGAGGTTGATTCTCTTGCTTGACTGATTCATGCTTTGATTGGCTTTGAAAAATTATATTATCTGAAGAATTGAGTGAGGGTCCTAAATAGTGATTCATGAAACTTAAAATTCCATGTTAGAGGCTCGTTTTACTTGTGAAGAATCACAAAGTGACAAGAGGCTCGTTTTATAGTTTTATTTCTTGTTACTTTAATTCTTAAACTTTCTCGTATGTTTAAAAAAATGAAAGATGTGGGACACTGCAAGAGATAGCAGCAACTGGAAAAGAATGTGTTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAAATTGGTATCAGAGCCTCTCGGTTAATCGGTGTTCTTGGAGAATTCGAGATGTCTGCTTTGAACGTGAAAATCGACAAATTCACAGGGAGGAACAGTTTCAGTTTATGGCAGATCAAGATGCGGGCCTTGTTGAAACAGCAAGGCTTCTGGGCGCCGTTGTCGAAAGACAAGAACGCCGTCGTTACTCCTGAGATGGCGATTCTGGAGGAAAAGGCGCACTCGACGATCATGCTGTGTCTCGCGGATGACGTCATCACGGAGGTCTCGGATGAAGAGACTGCTGCTGGTCTGTGGTTGAAGCTGGAGAGTTTGTACATGACAAAATCTCTAACCAACAAGCTGCTTCTGAAACAACGTCTATTCGGTTTACGAATGGCTGAAGGTACACAACTCAGGGAACACTTAGAGCAATTGAATACTTTGTTATTAGAATTGCGTAATATCGATGTGAAGATCGAGGATGAAGATGCTGCCCTGATTCTGTTAGTATCTCTCCCAATGTCGTTTGAGAATTTTGTTCAATCGTTCATTGTTGGGAAAGATACTGTGTCACTGGAAGAAGTCAGATCAGCCCTTCATAGCAGGGAATTACGGCATAAGGCTAACGGCACAAGTACGGACATACAGCCTTCCGGTCTGTTCACCAGTAGTGGAAAGGGAAGGAAAAACGGCGGAAAGAAAAATAAGCCGATGTCGAAGGGTGCAAAGCCGGATGATGTTTGTAATTACTGCAAGGAGAAGGGACATTGGAAATTTGATTGTCCGAAGAAGAAGAAGCAATCGGAAAAACAATCAGTGTCTGCTGCTGTTGCTGAAGAAGACACCAATTCTGAAGAAGATATTGCCCTAGTTGCGGATGAGCACACTCATCATTCAGATGTGTGGGTTCTTGATTCTGGGGCATCCTATCACATCTGTTCTAGGAGAGAGTGGTTCACGACTTATGAGCAGGTAGACGGAGGCAGCATCTCGATGGCCAACAGTTCTGTCTGCAAGGTGGTTGGGACAGGCTCGATCAAGATAAGGACACATGACGGTAGCTTCTGCACATTGAACGAGGTCAGGCACGTTCCATTGATGACGAAAAATCTGATATCTCTCAGTCTTTTGGACAGCAAGGGATTCAGCTGGTCGGGAAAAGATGGAGTCTTGCGGGTCTGGAAGGGTTCAAATTTGATTCTGAAAGGTGTCATGCGTGGTACTTTGTATTTTCTACAAGGTTCCACGGTTACAGGTTCAGCCCATGTTGCATCGTCAGAATTTCACCAGAAGGATATGACTAAGTTATGGCACATGAGACTTGGTCATATGGGTGAAAGAGGGATGCAAATTCTGTCAAAGGAGGATTTACTTGCTGGTCATAAGGTTAAGAGCCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGTGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGCTGGAATTTTGTTGGTCTGAATTTGATCAATTCTGTAAGGATGAAGGGATTGCTCGACATCGCACTGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCTGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTTGCAACCTACAGTGACTTTGTCTACTACGGAAGCGGAGTACATGGCCTTGACAGAGGCTGCAAAAGAAGGGATTTGGTTGAAAGGGCTGGTTAGTGATCTTGGTCTGCATCATGATCAGGCTACGGTGTATTGTGACAGTTTGAGCGCAATTTGTCTAGCCAAGGATCAAGTCCATCATGAGAGAACCAAGCATATCGACGTAAGGTATCATTTTCTGAGAAGTGAGAAGAGAATCAAGGTGAAGAAAGTAGGAACTGCTGATAATCCTGCTGATATGTTCACAAAGCCGGTTCCACAGAGCAAGTTTCAACACTGTTTGGACTTGCTCAACATCAGAAGCTGTTAATTGCCCTGTGGGGCAACTCTGAGGAAGAGGGGGAGGCCTGGCACTATCATAGTGCGTCTGAAGAATCTGTTCGGAGAATTCAAGTCAAGGTGGAGATTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAGTGTTATCCTACATTACACCATCTGCTGCTTTCCACTTATCTGCTAACTGAAAAGTTGTTCACAACTTCATATCCAGGCATTTATATTTTGTGACGGCTGACACTAATTCATGCCTTGTTTTGTATTCACTGGCATCAATTTTCTATTTTTTTATGTTCATCTACATAATTTTTCTGCATGTGACATTGCCACTTGGACCCAAAGCAGAGGCCCACCTTTTAAGAAGCTTTGATCTTTGTCTTTGATTCTACTCCTGTTTATGACTCTGACTTTATCCTATATTCTTCAACTTATGCATTATAGTAATTGAATGTGGATGATTCATTCATAAAAGATGAGCAAGAACTAGATTGCTCAAATTTCCTGGTTATTTACTGTGCACCTTACTTGTCAGGTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGCTTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCATT</genome_strand>
        <mrna_strand>AGTTCAGGGAGAAGAAGGCGACATCTATTATCAAG.....................................................................GTCTTCGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGCTTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCC-ATTCATCATTTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296818" ref_strand="+" ref_description="SGN-E296818 [cLET-26-F21]">
      <seq>tcaggggaagaaggcgacatctattatcaaggtctgggaccatgctgttggaatcatatgtgtccatgaagctggagggaaggtgactgactgggaaggaagttcacttgattttgcagcagatcaaactgaacggagactcatctttccttcaggcggtgttcttgtgactaatgggagcttacatagcaagattatcgaaatgatctcttcaaattcatcagttctttgacaggcttttggcattattgtgacaaaatcaatagtcagatactaatgaagatttcctccaattcatcaattgtttaatgacacttgcattcttttgacgaatcacagcatatagaagtatacatatcaatgtctctccattttcttcctcctcgtactcatcagtatctctctgttgtttctcataaatacctgtatcgatcttctttcatctgtatggaaggataatattggtggagaatgattcatgactgcagtctancttataaatcaatgttctttttgtttcttcccttcattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="130398" stop="137264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130698" g_stop="130728" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130729" i_stop="130797" i_length="69">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130798" g_stop="130848" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="82" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130849" i_stop="136512" i_length="5664">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136513" g_stop="136964" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="534" r_length="452" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E296818" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130698" e_stop="130728"/>
          <exon e_start="130798" e_stop="130848"/>
          <exon e_start="136513" e_stop="136964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGGGAAGAAGGCGACATCTATTATCAAGGTAATACTATCTTCTCGAGATTTTATAAGATTAGTGGAGCAGTATGATGCTCATATATGTTGAATGTAGGTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAGGTATGCATTTCTCTGTTGGTTTCTTTTTTGACATACCTTCTATACCTCTAATTGCCTGCCAACAGTTGCATCTTACAACCAGTTCTAAGAGAAGTCAGTGCTGCTGATATATCATTTATTTAACTACACAAACAGTTGTCAACTATATTGCATGTTATCAACACGCTTTTCGTTTTTTTTTCCTTAATAAAAAGAATTAAGTCATGTAAAGTACACCCTCTGGTATTGCAAATTCGAAGATATAGCTTTTATCTTTTCCTTTTTAGTCTAGATATAGTATTTTGAAGGCTTATCATCACTGTTTTAAAGGACTTTTCTTTGAAAAGTCAAATTCTGGAGGTTGATTCTCTTGCTTGACTGATTCATGCTTTGATTGGCTTTGAAAAATTATATTATCTGAAGAATTGAGTGAGGGTCCTAAATAGTGATTCATGAAACTTAAAATTCCATGTTAGAGGCTCGTTTTACTTGTGAAGAATCACAAAGTGACAAGAGGCTCGTTTTATAGTTTTATTTCTTGTTACTTTAATTCTTAAACTTTCTCGTATGTTTAAAAAAATGAAAGATGTGGGACACTGCAAGAGATAGCAGCAACTGGAAAAGAATGTGTTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAAATTGGTATCAGAGCCTCTCGGTTAATCGGTGTTCTTGGAGAATTCGAGATGTCTGCTTTGAACGTGAAAATCGACAAATTCACAGGGAGGAACAGTTTCAGTTTATGGCAGATCAAGATGCGGGCCTTGTTGAAACAGCAAGGCTTCTGGGCGCCGTTGTCGAAAGACAAGAACGCCGTCGTTACTCCTGAGATGGCGATTCTGGAGGAAAAGGCGCACTCGACGATCATGCTGTGTCTCGCGGATGACGTCATCACGGAGGTCTCGGATGAAGAGACTGCTGCTGGTCTGTGGTTGAAGCTGGAGAGTTTGTACATGACAAAATCTCTAACCAACAAGCTGCTTCTGAAACAACGTCTATTCGGTTTACGAATGGCTGAAGGTACACAACTCAGGGAACACTTAGAGCAATTGAATACTTTGTTATTAGAATTGCGTAATATCGATGTGAAGATCGAGGATGAAGATGCTGCCCTGATTCTGTTAGTATCTCTCCCAATGTCGTTTGAGAATTTTGTTCAATCGTTCATTGTTGGGAAAGATACTGTGTCACTGGAAGAAGTCAGATCAGCCCTTCATAGCAGGGAATTACGGCATAAGGCTAACGGCACAAGTACGGACATACAGCCTTCCGGTCTGTTCACCAGTAGTGGAAAGGGAAGGAAAAACGGCGGAAAGAAAAATAAGCCGATGTCGAAGGGTGCAAAGCCGGATGATGTTTGTAATTACTGCAAGGAGAAGGGACATTGGAAATTTGATTGTCCGAAGAAGAAGAAGCAATCGGAAAAACAATCAGTGTCTGCTGCTGTTGCTGAAGAAGACACCAATTCTGAAGAAGATATTGCCCTAGTTGCGGATGAGCACACTCATCATTCAGATGTGTGGGTTCTTGATTCTGGGGCATCCTATCACATCTGTTCTAGGAGAGAGTGGTTCACGACTTATGAGCAGGTAGACGGAGGCAGCATCTCGATGGCCAACAGTTCTGTCTGCAAGGTGGTTGGGACAGGCTCGATCAAGATAAGGACACATGACGGTAGCTTCTGCACATTGAACGAGGTCAGGCACGTTCCATTGATGACGAAAAATCTGATATCTCTCAGTCTTTTGGACAGCAAGGGATTCAGCTGGTCGGGAAAAGATGGAGTCTTGCGGGTCTGGAAGGGTTCAAATTTGATTCTGAAAGGTGTCATGCGTGGTACTTTGTATTTTCTACAAGGTTCCACGGTTACAGGTTCAGCCCATGTTGCATCGTCAGAATTTCACCAGAAGGATATGACTAAGTTATGGCACATGAGACTTGGTCATATGGGTGAAAGAGGGATGCAAATTCTGTCAAAGGAGGATTTACTTGCTGGTCATAAGGTTAAGAGCCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGTGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGCTGGAATTTTGTTGGTCTGAATTTGATCAATTCTGTAAGGATGAAGGGATTGCTCGACATCGCACTGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCTGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTTGCAACCTACAGTGACTTTGTCTACTACGGAAGCGGAGTACATGGCCTTGACAGAGGCTGCAAAAGAAGGGATTTGGTTGAAAGGGCTGGTTAGTGATCTTGGTCTGCATCATGATCAGGCTACGGTGTATTGTGACAGTTTGAGCGCAATTTGTCTAGCCAAGGATCAAGTCCATCATGAGAGAACCAAGCATATCGACGTAAGGTATCATTTTCTGAGAAGTGAGAAGAGAATCAAGGTGAAGAAAGTAGGAACTGCTGATAATCCTGCTGATATGTTCACAAAGCCGGTTCCACAGAGCAAGTTTCAACACTGTTTGGACTTGCTCAACATCAGAAGCTGTTAATTGCCCTGTGGGGCAACTCTGAGGAAGAGGGGGAGGCCTGGCACTATCATAGTGCGTCTGAAGAATCTGTTCGGAGAATTCAAGTCAAGGTGGAGATTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAGTGTTATCCTACATTACACCATCTGCTGCTTTCCACTTATCTGCTAACTGAAAAGTTGTTCACAACTTCATATCCAGGCATTTATATTTTGTGACGGCTGACACTAATTCATGCCTTGTTTTGTATTCACTGGCATCAATTTTCTATTTTTTTATGTTCATCTACATAATTTTTCTGCATGTGACATTGCCACTTGGACCCAAAGCAGAGGCCCACCTTTTAAGAAGCTTTGATCTTTGTCTTTGATTCTACTCCTGTTTATGACTCTGACTTTATCCTATATTCTTCAACTTATGCATTATAGTAATTGAATGTGGATGATTCATTCATAAAAGATGAGCAAGAACTAGATTGCTCAAATTTCCTGGTTATTTACTGTGCACCTTACTTGTCAGGTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGCTTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCATTTTCTTCCTCCTCGTACTCATCAGTATCTCTCTGTTGTTTCTCATAAATACCTGTATCGTTCTTCTTTCATCTGTATGGAAGGATAATATTGGTGGAGAATGATTCATGACTGCAGTCTAGCTTATAAATCAATGTTCTTTTTGTTTCTTCCCTTCATTGAG</genome_strand>
        <mrna_strand>TCAGGGGAAGAAGGCGACATCTATTATCAAG.....................................................................GTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGCTTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCATTTTCTTCCTCCTCGTACTCATCAGTATCTCTCTGTTGTTTCTCATAAATACCTGTATCGATCTTCTTTCATCTGTATGGAAGGATAATATTGGTGGAGAATGATTCATGACTGCAGTCTANCTTATAAATCAATGTTCTTTTTGTTTCTTCCCTTCATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="133620" stop="134868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133920" g_stop="134568" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133920" e_stop="134568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="133621" stop="134605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133921" g_stop="134305" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133921" e_stop="134305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="134279" stop="135674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134579" g_stop="135374" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134579" e_stop="135374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTA-----T-C------TAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701526" ref_strand="+" ref_description="SGN-E701526 [FA16AH06]">
      <seq>cttgttttatatattataataacagcttttcccccaaaacttgtgtcaatataattgaaaaatacattggtggattcctagcagaagcaaagaaaaaaaaatcaccaggagatgttttctcaacttacttaagcctgggaggcaagagttacttggtacatgtgttggtggaagttagcaagtagccagctaggtgcatacaagctggccagacaccatgtgaaggtaccagacaatggtaacataatatactaaccagttcagatacatatccactggtcctttcaccttgaggctcataattttgagcttcacttcagctcactcttttgatccttcggtttttcatttttatctggatgctctgcaaatttgattactatgacattgacttaagaaaatctgaacaaaatacttgcatgacacaattactcagctacaaatagacaaaaacaacttgaaagagaaggacataaactaagagtgaagaacattaccagcagctatcatcagtgaggacgcatgaagcagttcttggtccagttgtttggaactaatgcactgcagttgacagcaacaagtcagcaaccatgtatgcacattaatgtgtgtacacacgtcaatacatattctcaaaagagtttcaagccagagtgacactaaaagaaagaggagctagaacagagcgaggttgccaaaacggaagagagacatgaaatcatggtaattttgtcaaccttgaaatgtacttgagaccttttttatatagccaagaaaaatccgggggccgcggcgtatggttaaaccttgttgtttggtggacaatggacccgctcctctactcttctacacttaaatactaggcttttgtctgtcggggattcaaactccttatgtgcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0161P02-tBHFy/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0161P02.2" temp_strand="+" temp_description="C02HBa0161P02.2  AC215402.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0161P02 sequenced_by:kribb upload_account_name:korea">
        <position start="137432" stop="138744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137732" g_stop="138634" g_length="903"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="903" r_length="903" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0161P02.2" gen_strand="+" ref_id="SGN-E701526" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0161P02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137732" e_stop="138634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTTTATATATTATAATAACAGCTTTTCCCCCAAAACTTGTGTCAATATAATTGAAAAATACATTGGTGGATTCCTAGCAGAAGCAAAGAAAAAAAAATCACCAGGAGATGTTTTCTCAACTTACTTAAGCCTGGGAGGCAAGAGTTACTTGGTACATGTGTTGGTGGAAGTTAGCAAGTAGCCAGCTAGGTGCATACAAGCTGGCCAGACACCATGTGAAGGTACCAGACAATGGTAACATAATATACTAACCAGTTCAGATACATATCCACTGGTCCTTTCACCTTGAGGCTCATAATTTTGAGCTTCACTTCAGCTCACTCTTTTGATCCTTCGGTTTTTCATTTTTATCTGGATGCTCTGCAAATTTGATTACTATGACATTGACTTAAGAAAATCTGAACAAAATACTTGCATGACACAATTACTCAGCTACAAATAGACAAAAACAACTTGAAAGAGAAGGACATAAACTAAGAGTGAAGAACATTACCAGCAGCTATCATCAGTGAGGACGCATGAAGCAGTTCTTGGTCCAGTTGTTTGGAACTAATGCACTGCAGTTGACAGCAACAAGTCAGCAACCATGTATGCACATTAATGTGTGTACACACGTCAATACATATTCTCAAAAGAGTTTCAAGCCAGAGTGACACTAAAAGAAAGAGGAGCTAGAACAGAGCGAGGTTGCCAAAACGGAAGAGAGACATGAAATCATGGTAATTTTGTCAACCTTGAAATGTACTTGAGACCTTTTTTATATAGCCAAGAAAAATCCGGGGGCCGCGGCGTATGGTTAAACCTTGTTGTTTGGTGGACAATGGACCCGCTCCTCTACTCTTCTACACTTAAATACTAGGCTTTTGTCTGTCGTGGATTCAAACTCCTTATGTGCAACT</genome_strand>
        <mrna_strand>CTTGTTTTATATATTATAATAACAGCTTTTCCCCCAAAACTTGTGTCAATATAATTGAAAAATACATTGGTGGATTCCTAGCAGAAGCAAAGAAAAAAAAATCACCAGGAGATGTTTTCTCAACTTACTTAAGCCTGGGAGGCAAGAGTTACTTGGTACATGTGTTGGTGGAAGTTAGCAAGTAGCCAGCTAGGTGCATACAAGCTGGCCAGACACCATGTGAAGGTACCAGACAATGGTAACATAATATACTAACCAGTTCAGATACATATCCACTGGTCCTTTCACCTTGAGGCTCATAATTTTGAGCTTCACTTCAGCTCACTCTTTTGATCCTTCGGTTTTTCATTTTTATCTGGATGCTCTGCAAATTTGATTACTATGACATTGACTTAAGAAAATCTGAACAAAATACTTGCATGACACAATTACTCAGCTACAAATAGACAAAAACAACTTGAAAGAGAAGGACATAAACTAAGAGTGAAGAACATTACCAGCAGCTATCATCAGTGAGGACGCATGAAGCAGTTCTTGGTCCAGTTGTTTGGAACTAATGCACTGCAGTTGACAGCAACAAGTCAGCAACCATGTATGCACATTAATGTGTGTACACACGTCAATACATATTCTCAAAAGAGTTTCAAGCCAGAGTGACACTAAAAGAAAGAGGAGCTAGAACAGAGCGAGGTTGCCAAAACGGAAGAGAGACATGAAATCATGGTAATTTTGTCAACCTTGAAATGTACTTGAGACCTTTTTTATATAGCCAAGAAAAATCCGGGGGCCGCGGCGTATGGTTAAACCTTGTTGTTTGGTGGACAATGGACCCGCTCCTCTACTCTTCTACACTTAAATACTAGGCTTTTGTCTGTCGGGGATTCAAACTCCTTATGTGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>86</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6297" PGL_stop="6974"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6297" e_stop="6974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="6297" e_stop="6974" e_length="678"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6297" stop="6725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6399" stop="6974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426698" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTGTAATAAATTACAATTTCAATTTACAACTATTAGTAGAGTACATAGCTTACGCAGCCACCTTCTAGGAAGGGTTCTGTTTCAACTATGTCTCGAATGTAATATTAATAGTTGTATAGTCCCGTAAATCCTCTTTCTAACTCAGCTATGGATTGATTGTGATCAACTTCTGGTCTTGGTAAAGCTCGTTGACGATCTTGAATTTCGATGCCATCATCACTACCATATCCAATAGCTGAATCTATGAAAAGTTCAAATTGACTATCTAACTTTGGAAGTCCTTGATTTCTACGCTCAGCATTTATCCAGTCTCTAAATAACACTGATATCTCCAGGGTGTGTTCTGCTAACGAATATCTGTGGTCTCCAATTTGAAATCTTGTCGCGCTGAAAGCTGCCTCCGAAGCTACTGATGATCCTTGAATTGCAAGCACATCCTTCACCATCCTACTAAGTTTTGGATATTGAGCTCCACGATTCCTCCACCAGTTCAATAGTTCCGATATACCATTATCGTTTGTAATATCATCTGTACCCTGTTCAAGATATTTAACAAATTCACATTTATTAGAAGAGTCAAGACCAAGTTTATGTTTCACTCGTCCATGAGCACCTACTTGATTCGTAGACGTTTGAGGATTTTCAACATTATCTAAGAATGAATATTTATCATAC</gDNA_template>
            <first_frame> N  L  *  *  I  T  I  S  I  Y  N  Y  *  *  S  T  *  L  T  Q  P  P  S  R  K  G  S  V  S  T  M  S  R  M  *  Y  *  *  L  Y  S  P  V  N  P  L  S  N  S  A  M  D  *  L  *  S  T  S  G  L  G  K  A  R  *  R  S  *  I  S  M  P  S  S  L  P  Y  P  I  A  E  S  M  K  S  S  N  *  L  S  N  F  G  S  P  *  F  L  R  S  A  F  I  Q  S  L  N  N  T  D  I  S  R  V  C  S  A  N  E  Y  L  W  S  P  I  *  N  L  V  A  L  K  A  A  S  E  A  T  D  D  P  *  I  A  S  T  S  F  T  I  L  L  S  F  G  Y  *  A  P  R  F  L  H  Q  F  N  S  S  D  I  P  L  S  F  V  I  S  S  V  P  C  S  R  Y  L  T  N  S  H  L  L  E  E  S  R  P  S  L  C  F  T  R  P  *  A  P  T  *  F  V  D  V  *  G  F  S  T  L  S  K  N  E  Y  L  S  Y </first_frame>
            <second_frame>  I  C  N  K  L  Q  F  Q  F  T  T  I  S  R  V  H  S  L  R  S  H  L  L  G  R  V  L  F  Q  L  C  L  E  C  N  I  N  S  C  I  V  P  *  I  L  F  L  T  Q  L  W  I  D  C  D  Q  L  L  V  L  V  K  L  V  D  D  L  E  F  R  C  H  H  H  Y  H  I  Q  *  L  N  L  *  K  V  Q  I  D  Y  L  T  L  E  V  L  D  F  Y  A  Q  H  L  S  S  L  *  I  T  L  I  S  P  G  C  V  L  L  T  N  I  C  G  L  Q  F  E  I  L  S  R  *  K  L  P  P  K  L  L  M  I  L  E  L  Q  A  H  P  S  P  S  Y  *  V  L  D  I  E  L  H  D  S  S  T  S  S  I  V  P  I  Y  H  Y  R  L  *  Y  H  L  Y  P  V  Q  D  I  *  Q  I  H  I  Y  *  K  S  Q  D  Q  V  Y  V  S  L  V  H  E  H  L  L  D  S  *  T  F  E  D  F  Q  H  Y  L  R  M  N  I  Y  H   </second_frame>
            <third_frame>   F  V  I  N  Y  N  F  N  L  Q  L  L  V  E  Y  I  A  Y  A  A  T  F  *  E  G  F  C  F  N  Y  V  S  N  V  I  L  I  V  V  *  S  R  K  S  S  F  *  L  S  Y  G  L  I  V  I  N  F  W  S  W  *  S  S  L  T  I  L  N  F  D  A  I  I  T  T  I  S  N  S  *  I  Y  E  K  F  K  L  T  I  *  L  W  K  S  L  I  S  T  L  S  I  Y  P  V  S  K  *  H  *  Y  L  Q  G  V  F  C  *  R  I  S  V  V  S  N  L  K  S  C  R  A  E  S  C  L  R  S  Y  *  *  S  L  N  C  K  H  I  L  H  H  P  T  K  F  W  I  L  S  S  T  I  P  P  P  V  Q  *  F  R  Y  T  I  I  V  C  N  I  I  C  T  L  F  K  I  F  N  K  F  T  F  I  R  R  V  K  T  K  F  M  F  H  S  S  M  S  T  Y  L  I  R  R  R  L  R  I  F  N  I  I  *  E  *  I  F  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0161P02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6889" PGL_stop="6315"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6889" e_stop="6315"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="6889" e_stop="6315" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6889" stop="6315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTTAAATATCTTGAACAGGGTACAGATGATATTACAAACGATAATGGTATATCGGAACTATTGAACTGGTGGAGGAATCGTGGAGCTCAATATCCAAAACTTAGTAGGATGGTGAAGGATGTGCTTGCAATTCAAGGATCATCAGTAGCTTCGGAGGCAGCTTTCAGCGCGACAAGATTTCAAATTGGAGACCACAGATATTCGTTAGCAGAACACACCCTGGAGATATCAGTGTTATTTAGAGACTGGATAAATGCTGAGCGTAGAAATCAAGGACTTCCAAAGTTAGATAGTCAATTTGAACTTTTCATAGATTCAGCTATTGGATATGGTAGTGATGATGGCATCGAAATTCAAGATCGTCAACGAGCTTTACCAAGACCAGAAGTTGATCACAATCAATCCATAGCTGAGTTAGAAAGAGGATTTACGGGACTATACAACTATTAATATTACATTCGAGACATAGTTGAAACAGAACCCTTCCTAGAAGGTGGCTGCGTAAGCTATGTACTCTACTAATAGTTGTAAATTGAAAT</gDNA_template>
            <first_frame> K  L  G  L  D  S  S  N  K  C  E  F  V  K  Y  L  E  Q  G  T  D  D  I  T  N  D  N  G  I  S  E  L  L  N  W  W  R  N  R  G  A  Q  Y  P  K  L  S  R  M  V  K  D  V  L  A  I  Q  G  S  S  V  A  S  E  A  A  F  S  A  T  R  F  Q  I  G  D  H  R  Y  S  L  A  E  H  T  L  E  I  S  V  L  F  R  D  W  I  N  A  E  R  R  N  Q  G  L  P  K  L  D  S  Q  F  E  L  F  I  D  S  A  I  G  Y  G  S  D  D  G  I  E  I  Q  D  R  Q  R  A  L  P  R  P  E  V  D  H  N  Q  S  I  A  E  L  E  R  G  F  T  G  L  Y  N  Y  *  Y  Y  I  R  D  I  V  E  T  E  P  F  L  E  G  G  C  V  S  Y  V  L  Y  *  *  L  *  I  E   </first_frame>
            <second_frame>  N  L  V  L  T  L  L  I  N  V  N  L  L  N  I  L  N  R  V  Q  M  I  L  Q  T  I  M  V  Y  R  N  Y  *  T  G  G  G  I  V  E  L  N  I  Q  N  L  V  G  W  *  R  M  C  L  Q  F  K  D  H  Q  *  L  R  R  Q  L  S  A  R  Q  D  F  K  L  E  T  T  D  I  R  *  Q  N  T  P  W  R  Y  Q  C  Y  L  E  T  G  *  M  L  S  V  E  I  K  D  F  Q  S  *  I  V  N  L  N  F  S  *  I  Q  L  L  D  M  V  V  M  M  A  S  K  F  K  I  V  N  E  L  Y  Q  D  Q  K  L  I  T  I  N  P  *  L  S  *  K  E  D  L  R  D  Y  T  T  I  N  I  T  F  E  T  *  L  K  Q  N  P  S  *  K  V  A  A  *  A  M  Y  S  T  N  S  C  K  L  K  </second_frame>
            <third_frame>   T  W  S  *  L  F  *  *  M  *  I  C  *  I  S  *  T  G  Y  R  *  Y  Y  K  R  *  W  Y  I  G  T  I  E  L  V  E  E  S  W  S  S  I  S  K  T  *  *  D  G  E  G  C  A  C  N  S  R  I  I  S  S  F  G  G  S  F  Q  R  D  K  I  S  N  W  R  P  Q  I  F  V  S  R  T  H  P  G  D  I  S  V  I  *  R  L  D  K  C  *  A  *  K  S  R  T  S  K  V  R  *  S  I  *  T  F  H  R  F  S  Y  W  I  W  *  *  *  W  H  R  N  S  R  S  S  T  S  F  T  K  T  R  S  *  S  Q  S  I  H  S  *  V  R  K  R  I  Y  G  T  I  Q  L  L  I  L  H  S  R  H  S  *  N  R  T  L  P  R  R  W  L  R  K  L  C  T  L  L  I  V  V  N  *  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6889" stop="6404"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLGLDSSNKCEFVKYLEQGTDDITNDNGISELLNWWRNRGAQYPKLSRMVKDVLAIQGSSVASEAAFSATRFQIGDHRYSLAEHTLEISVLFRDWINAERRNQGLPKLDSQFELFIDSAIGYGSDDGIEIQDRQRALPRPEVDHNQSIAELERGFTGLYNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="8378" PGL_stop="6931"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8378" e_stop="6931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="8378" e_stop="6931" e_length="1448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8378" stop="8150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8221" stop="7625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8084" stop="7922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7904" stop="7321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7834" stop="7102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7542" stop="6931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATTTTAAATATACATCTGGTGGGACGGGAGGTTCAACGGGGGGATTAAAAAAACATTTGATTAACAAGCATAGTAAAGAGCGGTTTGCATATATGTCTTCTCTTGAAGTTGTTGGAAATTGTAATGTTGAAGAATCGGTTAGAGGATCAAATATGGTTCAAAGTGAGTTAAATACTTCGAACCCAAGTGGTCCTCTTACACATCGAACCTATAACAAGGATCGTGATCGTGAAAACTTTGCTAAAATGGTTGTTGTTTGTGGTTTACCTTTTAGTTTTGGAGAACATCCGGGTTTTATTGCTTATATTCGTGAAACATATAATCCTAGTTTTCAAGGTTTATCAAGAAGCATGGTAAAAAGAGATATTTTTGAATTTCAAGAAAAACATTGTCAATATTTACGTGCCTATTTTGAACTAATGGATTGTAGAGTTGCTATTACTACTGATATGGGTCGTAGTCCTAATGGTTTTGATTATTTAACTGTTACTGCGCATTGGATCGATTATAATTGGAATTTACAAAAAAGAATTATTGGTTATAAAATTTGTCAAAAGAAAAAAACCGGAATTTATATTGCTACTACTATGTTGGAAATTTTAGATTTTTTTGGTCTTTGTGATAAAGTTGTTAGTATTACTTTAGATAATGCCTCTGCTAATTTAAATGCTATTAATATGCTAGAACCTAGACTTTGTCCTATTAGTAAATATGTTTTTCATGTTAGATGTGCCGCGCATATATTAAATTTGGTTGGTAGTGACGGTGTGAAATTATTTGAAAATAGTTGTGATAAAATTGATAATGCTTGTTTTTACATTTTTCATATGAATAGTAGTAGTAGAATTAATCAATTTAAAGAACTTTGTAAGGCATTTAAACTTCCGTTTAAAAAAGTTCCGAAGCATGTAAAAACTAGATGGAATTCCTTTTATGATATGCTTGAAGTTGCTTATGCATATAGGCAACCTATTACTACGCTATTTAATAATCATAATGCTTATCCTGAATTTAAAATTAATGATAGTGATTGGGATGAAGTAAATGAACTTAGAATATTTTTGAAATCATTTTATGATGCTAATAAAAAATTTTCTGGAATATATTATCCTACTATTTCTGAAATTTTAATACACATATGTGAGATTTCATCTATTTTTTCTGAATATAAAACAAATACTTTATTCACCTCTGCTATTGAAGTTATGATTACAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAATTTATTTAACTGCACTTCTTTTCAACCCCGAATATAAAGAATATGGTGCAAAAGCTTTAGTTGAATGCATTTATCAGAATTTAGATATTCAACCTGAAGAAGAACCTGATTTGGTAACATGTCAAAATAGTATAAAATACTTTGCAAAAGAAATGTATGATAAATATTCATTCTTAGATAATGTTGAAAATCCTCAAA</gDNA_template>
            <first_frame> T  F  *  I  Y  I  W  W  D  G  R  F  N  G  G  I  K  K  T  F  D  *  Q  A  *  *  R  A  V  C  I  Y  V  F  S  *  S  C  W  K  L  *  C  *  R  I  G  *  R  I  K  Y  G  S  K  *  V  K  Y  F  E  P  K  W  S  S  Y  T  S  N  L  *  Q  G  S  *  S  *  K  L  C  *  N  G  C  C  L  W  F  T  F  *  F  W  R  T  S  G  F  Y  C  L  Y  S  *  N  I  *  S  *  F  S  R  F  I  K  K  H  G  K  K  R  Y  F  *  I  S  R  K  T  L  S  I  F  T  C  L  F  *  T  N  G  L  *  S  C  Y  Y  Y  *  Y  G  S  *  S  *  W  F  *  L  F  N  C  Y  C  A  L  D  R  L  *  L  E  F  T  K  K  N  Y  W  L  *  N  L  S  K  E  K  N  R  N  L  Y  C  Y  Y  Y  V  G  N  F  R  F  F  W  S  L  *  *  S  C  *  Y  Y  F  R  *  C  L  C  *  F  K  C  Y  *  Y  A  R  T  *  T  L  S  Y  *  *  I  C  F  S  C  *  M  C  R  A  Y  I  K  F  G  W  *  *  R  C  E  I  I  *  K  *  L  *  *  N  *  *  C  L  F  L  H  F  S  Y  E  *  *  *  *  N  *  S  I  *  R  T  L  *  G  I  *  T  S  V  *  K  S  S  E  A  C  K  N  *  M  E  F  L  L  *  Y  A  *  S  C  L  C  I  *  A  T  Y  Y  Y  A  I  *  *  S  *  C  L  S  *  I  *  N  *  *  *  *  L  G  *  S  K  *  T  *  N  I  F  E  I  I  L  *  C  *  *  K  I  F  W  N  I  L  S  Y  Y  F  *  N  F  N  T  H  M  *  D  F  I  Y  F  F  *  I  *  N  K  Y  F  I  H  L  C  Y  *  S  Y  D  Y  K  I  *  K  I  F  F  S  Y  S  S  N  L  F  N  C  T  S  F  Q  P  R  I  *  R  I  W  C  K  S  F  S  *  M  H  L  S  E  F  R  Y  S  T  *  R  R  T  *  F  G  N  M  S  K  *  Y  K  I  L  C  K  R  N  V  *  *  I  F  I  L  R  *  C  *  K  S  S   </first_frame>
            <second_frame>  H  F  K  Y  T  S  G  G  T  G  G  S  T  G  G  L  K  K  H  L  I  N  K  H  S  K  E  R  F  A  Y  M  S  S  L  E  V  V  G  N  C  N  V  E  E  S  V  R  G  S  N  M  V  Q  S  E  L  N  T  S  N  P  S  G  P  L  T  H  R  T  Y  N  K  D  R  D  R  E  N  F  A  K  M  V  V  V  C  G  L  P  F  S  F  G  E  H  P  G  F  I  A  Y  I  R  E  T  Y  N  P  S  F  Q  G  L  S  R  S  M  V  K  R  D  I  F  E  F  Q  E  K  H  C  Q  Y  L  R  A  Y  F  E  L  M  D  C  R  V  A  I  T  T  D  M  G  R  S  P  N  G  F  D  Y  L  T  V  T  A  H  W  I  D  Y  N  W  N  L  Q  K  R  I  I  G  Y  K  I  C  Q  K  K  K  T  G  I  Y  I  A  T  T  M  L  E  I  L  D  F  F  G  L  C  D  K  V  V  S  I  T  L  D  N  A  S  A  N  L  N  A  I  N  M  L  E  P  R  L  C  P  I  S  K  Y  V  F  H  V  R  C  A  A  H  I  L  N  L  V  G  S  D  G  V  K  L  F  E  N  S  C  D  K  I  D  N  A  C  F  Y  I  F  H  M  N  S  S  S  R  I  N  Q  F  K  E  L  C  K  A  F  K  L  P  F  K  K  V  P  K  H  V  K  T  R  W  N  S  F  Y  D  M  L  E  V  A  Y  A  Y  R  Q  P  I  T  T  L  F  N  N  H  N  A  Y  P  E  F  K  I  N  D  S  D  W  D  E  V  N  E  L  R  I  F  L  K  S  F  Y  D  A  N  K  K  F  S  G  I  Y  Y  P  T  I  S  E  I  L  I  H  I  C  E  I  S  S  I  F  S  E  Y  K  T  N  T  L  F  T  S  A  I  E  V  M  I  T  K  F  K  K  Y  F  F  P  I  P  Q  I  Y  L  T  A  L  L  F  N  P  E  Y  K  E  Y  G  A  K  A  L  V  E  C  I  Y  Q  N  L  D  I  Q  P  E  E  E  P  D  L  V  T  C  Q  N  S  I  K  Y  F  A  K  E  M  Y  D  K  Y  S  F  L  D  N  V  E  N  P  Q  </second_frame>
            <third_frame>   I  L  N  I  H  L  V  G  R  E  V  Q  R  G  D  *  K  N  I  *  L  T  S  I  V  K  S  G  L  H  I  C  L  L  L  K  L  L  E  I  V  M  L  K  N  R  L  E  D  Q  I  W  F  K  V  S  *  I  L  R  T  Q  V  V  L  L  H  I  E  P  I  T  R  I  V  I  V  K  T  L  L  K  W  L  L  F  V  V  Y  L  L  V  L  E  N  I  R  V  L  L  L  I  F  V  K  H  I  I  L  V  F  K  V  Y  Q  E  A  W  *  K  E  I  F  L  N  F  K  K  N  I  V  N  I  Y  V  P  I  L  N  *  W  I  V  E  L  L  L  L  L  I  W  V  V  V  L  M  V  L  I  I  *  L  L  L  R  I  G  S  I  I  I  G  I  Y  K  K  E  L  L  V  I  K  F  V  K  R  K  K  P  E  F  I  L  L  L  L  C  W  K  F  *  I  F  L  V  F  V  I  K  L  L  V  L  L  *  I  M  P  L  L  I  *  M  L  L  I  C  *  N  L  D  F  V  L  L  V  N  M  F  F  M  L  D  V  P  R  I  Y  *  I  W  L  V  V  T  V  *  N  Y  L  K  I  V  V  I  K  L  I  M  L  V  F  T  F  F  I  *  I  V  V  V  E  L  I  N  L  K  N  F  V  R  H  L  N  F  R  L  K  K  F  R  S  M  *  K  L  D  G  I  P  F  M  I  C  L  K  L  L  M  H  I  G  N  L  L  L  R  Y  L  I  I  I  M  L  I  L  N  L  K  L  M  I  V  I  G  M  K  *  M  N  L  E  Y  F  *  N  H  F  M  M  L  I  K  N  F  L  E  Y  I  I  L  L  F  L  K  F  *  Y  T  Y  V  R  F  H  L  F  F  L  N  I  K  Q  I  L  Y  S  P  L  L  L  K  L  *  L  Q  N  L  K  N  I  F  F  L  F  L  K  F  I  *  L  H  F  F  S  T  P  N  I  K  N  M  V  Q  K  L  *  L  N  A  F  I  R  I  *  I  F  N  L  K  K  N  L  I  W  *  H  V  K  I  V  *  N  T  L  Q  K  K  C  M  I  N  I  H  S  *  I  M  L  K  I  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8377" stop="6932"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFKYTSGGTGGSTGGLKKHLINKHSKERFAYMSSLEVVGNCNVEESVRGSNMVQSELNTSNPSGPLTHRTYNKDRDRENFAKMVVVCGLPFSFGEHPGFIAYIRETYNPSFQGLSRSMVKRDIFEFQEKHCQYLRAYFELMDCRVAITTDMGRSPNGFDYLTVTAHWIDYNWNLQKRIIGYKICQKKKTGIYIATTMLEILDFFGLCDKVVSITLDNASANLNAINMLEPRLCPISKYVFHVRCAAHILNLVGSDGVKLFENSCDKIDNACFYIFHMNSSSRINQFKELCKAFKLPFKKVPKHVKTRWNSFYDMLEVAYAYRQPITTLFNNHNAYPEFKINDSDWDEVNELRIFLKSFYDANKKFSGIYYPTISEILIHICEISSIFSEYKTNTLFTSAIEVMITKFKKYFFPIPQIYLTALLFNPEYKEYGAKALVECIYQNLDIQPEEEPDLVTCQNSIKYFAKEMYDKYSFLDNVENPQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14479" PGL_stop="10108"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14479" e_stop="14160"/>
            <exon e_start="14036" e_stop="13888"/>
            <exon e_start="11113" e_stop="10952"/>
            <exon e_start="10223" e_stop="10108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14479" e_stop="14160" e_length="320"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14159" i_stop="14037" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14036" e_stop="13888" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="13887" i_stop="11114" i_length="2774"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11113" e_stop="10952" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.884" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10951" i_stop="10224" i_length="728"/>
          </intron>
          <exon e_serial="4" e_score="0.974">
            <gDNA_exon_boundary e_start="10223" e_stop="10108" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14479" stop="14160"/>
              <exon start="14036" stop="13888"/>
              <exon start="11113" stop="11050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14427" stop="14160"/>
              <exon start="14036" stop="13888"/>
              <exon start="11113" stop="10952"/>
              <exon start="10223" stop="10139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14427" stop="14160"/>
              <exon start="14036" stop="13888"/>
              <exon start="11113" stop="10990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14398" stop="14160"/>
              <exon start="14036" stop="13888"/>
              <exon start="11113" stop="10952"/>
              <exon start="10223" stop="10108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14378" stop="14160"/>
              <exon start="14036" stop="13888"/>
              <exon start="11113" stop="10952"/>
              <exon start="10223" stop="10108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14313" stop="14160"/>
              <exon start="14036" stop="13888"/>
              <exon start="11113" stop="10952"/>
              <exon start="10223" stop="10173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449477" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAAATAGCAATCTATTCTTTTTTAATCGGAGCGACATAAATCCCTAACTAAACCCCTCTCAGTCGTCAAGTCTCTTGTCCTTCCGATTCAAAAACAGAAGCAAATCAAAGAGACGAACTCACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACTCATCATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGCTTCATGGATCAACAAGATTAAAGGTGTATTCACCGGCCAAAAAACCTCCACCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTC : GATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTGGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAG : AATCTTCAAACACATCAAAAGCAACAGGCAGCAAAACATTGCAAGTGCACAATAGTTGATGTCGAGAATATGTTGGCAAAGTTTACTTGGGCAAAAGAAGCACAAATGAAACTTGAGAAGATGAAGGAAGAAGGGAAGCCATTGCCAAAGAGCATGGCTGAG : GTTCAAAAGTTGATGGGTTCATCCCCGCTGGATGTTGCACGATCAAACATGGCTAAGAGTGGGCAAATTAGTAGGAATGCATTCTGTCCTTGTGGTTCCAAGAAGAGATACAAAAG</gDNA_template>
            <first_frame> M  K  *  Q  S  I  L  F  *  S  E  R  H  K  S  L  T  K  P  L  S  V  V  K  S  L  V  L  P  I  Q  K  Q  K  Q  I  K  E  T  N  S  Q  *  F  I  Y  D  S  S  S  N  P  T  V  L  L  I  I  N  L  S  H  F  T  Q  M  G  F  F  H  N  T  T  P  C  F  M  D  Q  Q  D  *  R  C  I  H  R  P  K  N  L  H  R  C  R  Q  S  T  H  F  R  V  I  H  S  P  S :   I  C  G  *  I  G  Q  S  K  E  V  G  D  S  E  A  V  C  C  G  E  R  *  *  S  Y  I  C  *  S  F  *  E  A  A  S  Y  S  S  I  S  W  C  I  G  S  H  W  R   : E  S  S  N  T  S  K  A  T  G  S  K  T  L  Q  V  H  N  S  *  C  R  E  Y  V  G  K  V  Y  L  G  K  R  S  T  N  E  T  *  E  D  E  G  R  R  E  A  I  A  K  E  H  G  *   : G  S  K  V  D  G  F  I  P  A  G  C  C  T  I  K  H  G  *  E  W  A  N  *  *  E  C  I  L  S  L  W  F  Q  E  E  I  Q  K </first_frame>
            <second_frame>  *  N  S  N  L  F  F  F  N  R  S  D  I  N  P  *  L  N  P  S  Q  S  S  S  L  L  S  F  R  F  K  N  R  S  K  S  K  R  R  T  H  S  N  S  Y  M  I  R  P  R  T  L  L  F  Y  S  S  S  I  S  H  I  S  H  R  W  V  S  S  T  T  Q  L  H  A  S  W  I  N  K  I  K  G  V  F  T  G  Q  K  T  S  T  D  A  A  K  V  P  I  S  E  S  F  T  L  L   : R  F  A  D  E  L  G  R  A  K  K  L  G  T  L  K  Q  Y  V  V  G  R  G  S  E  V  T  F  A  E  A  F  E  K  Q  Q  A  I  L  Q  Y  L  G  A  L  D  P  T  G  E  :  N  L  Q  T  H  Q  K  Q  Q  A  A  K  H  C  K  C  T  I  V  D  V  E  N  M  L  A  K  F  T  W  A  K  E  A  Q  M  K  L  E  K  M  K  E  E  G  K  P  L  P  K  S  M  A  E  :  V  Q  K  L  M  G  S  S  P  L  D  V  A  R  S  N  M  A  K  S  G  Q  I  S  R  N  A  F  C  P  C  G  S  K  K  R  Y  K   </second_frame>
            <third_frame>   E  I  A  I  Y  S  F  L  I  G  A  T  *  I  P  N  *  T  P  L  S  R  Q  V  S  C  P  S  D  S  K  T  E  A  N  Q  R  D  E  L  T  V  I  H  I  *  F  V  L  E  P  Y  C  F  T  H  H  Q  S  L  T  F  H  T  D  G  F  L  P  Q  H  N  S  M  L  H  G  S  T  R  L  K  V  Y  S  P  A  K  K  P  P  P  M  P  P  K  Y  P  F  P  S  H  S  L  S  F  :  D  L  R  M  N  W  A  E  Q  R  S  W  G  L  *  S  S  M  L  W  G  E  V  V  K  L  H  L  L  K  L  L  R  S  S  K  L  F  F  N  I  L  V  H  W  I  P  L  E  R :   I  F  K  H  I  K  S  N  R  Q  Q  N  I  A  S  A  Q  *  L  M  S  R  I  C  W  Q  S  L  L  G  Q  K  K  H  K  *  N  L  R  R  *  R  K  K  G  S  H  C  Q  R  A  W  L  R :   F  K  S  *  W  V  H  P  R  W  M  L  H  D  Q  T  W  L  R  V  G  K  L  V  G  M  H  S  V  L  V  V  P  R  R  D  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14430" stop="14160"/>
                    <exon start="14036" stop="13888"/>
                    <exon start="11113" stop="10952"/>
                    <exon start="10223" stop="10110"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNPSQSSSLLSFRFKNRSKSKRRTHSNSYMIRPRTLLFYSSSISHISHRWVSSTTQLHASWINKIKGVFTGQKTSTDAAKVPISESFTLLRFADELGRAKKLGTLKQYVVGRGSEVTFAEAFEKQQAILQYLGALDPTGENLQTHQKQQAAKHCKCTIVDVENMLAKFTWAKEAQMKLEKMKEEGKPLPKSMAEVQKLMGSSPLDVARSNMAKSGQISRNAFCPCGSKKRYK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14368" e_stop="14160"/>
            <exon e_start="14036" e_stop="13475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14368" e_stop="14160" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14159" i_stop="14037" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="14036" e_stop="13475" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14368" stop="14160"/>
              <exon start="14036" stop="13475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14360" stop="14160"/>
              <exon start="14036" stop="13613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343102" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGACGAACTCACAGTAATTCATATATGATTCGTCCTCGAACCCTACTGTTTTACTCATCATCAATCTCTCACATTTCACACAGATGGGTTTCTTCCACAACACAACTCCATGCTTCATGGATCAACAAGATTAAAGGTGTATTCACCGGCCAAAAAACCTCCACCGATGCCGCCAAAGTACCCATTTCCGAGTCATTCACTCTCCTTC : GATTTGCGGATGAATTGGGCAGAGCAAAGAAGTTGGGGACTCTGAAGCAGTATGTTGTGGGGAGAGGTAGTGAAGTTACATTTGCTGAAGCTTTTGAGAAGCAGCAAGCTATTCTTCAATATCTTGGTGCATTGGATCCCACTGGAGAGGTTTATACCCATTTACTTTAGCTCTCTCTATTTTAATGTGGTTAATCCTGTAGTATTCTGATTAAATGCCAAGTGTATTAACAAATACTTTATGTAGTTATTGTACTGTTCCCTCTGGTTTCTTTTTGTCTCTTTGGATTCTAGCTAAGTGGAATGCTTATATCCGTTATAGATTCATAAAGCAGTTGGATTCGTTATAAACATACCTACGAAGCGATTGACTAGGAGTGTTGAGTTGAATGATGGAGTTTAGGGGTAACCGTTGATGTTTTTCTTGGTCTGTTTTAAAGCTTTAGTTCCTCTACGCACATAATAAAGTATTGTTAAGTGCAGTTGGGAGGAGGAAAATGATCAGGAAGTAGATAAAGCTGCTCATCCTTTATGCAGAATTGAAAAATTGAAGGTGCTAGGCG</gDNA_template>
            <first_frame> E  T  N  S  Q  *  F  I  Y  D  S  S  S  N  P  T  V  L  L  I  I  N  L  S  H  F  T  Q  M  G  F  F  H  N  T  T  P  C  F  M  D  Q  Q  D  *  R  C  I  H  R  P  K  N  L  H  R  C  R  Q  S  T  H  F  R  V  I  H  S  P  S :   I  C  G  *  I  G  Q  S  K  E  V  G  D  S  E  A  V  C  C  G  E  R  *  *  S  Y  I  C  *  S  F  *  E  A  A  S  Y  S  S  I  S  W  C  I  G  S  H  W  R  G  L  Y  P  F  T  L  A  L  S  I  L  M  W  L  I  L  *  Y  S  D  *  M  P  S  V  L  T  N  T  L  C  S  Y  C  T  V  P  S  G  F  F  L  S  L  W  I  L  A  K  W  N  A  Y  I  R  Y  R  F  I  K  Q  L  D  S  L  *  T  Y  L  R  S  D  *  L  G  V  L  S  *  M  M  E  F  R  G  N  R  *  C  F  S  W  S  V  L  K  L  *  F  L  Y  A  H  N  K  V  L  L  S  A  V  G  R  R  K  M  I  R  K  *  I  K  L  L  I  L  Y  A  E  L  K  N  *  R  C  *  A </first_frame>
            <second_frame>  R  R  T  H  S  N  S  Y  M  I  R  P  R  T  L  L  F  Y  S  S  S  I  S  H  I  S  H  R  W  V  S  S  T  T  Q  L  H  A  S  W  I  N  K  I  K  G  V  F  T  G  Q  K  T  S  T  D  A  A  K  V  P  I  S  E  S  F  T  L  L   : R  F  A  D  E  L  G  R  A  K  K  L  G  T  L  K  Q  Y  V  V  G  R  G  S  E  V  T  F  A  E  A  F  E  K  Q  Q  A  I  L  Q  Y  L  G  A  L  D  P  T  G  E  V  Y  T  H  L  L  *  L  S  L  F  *  C  G  *  S  C  S  I  L  I  K  C  Q  V  Y  *  Q  I  L  Y  V  V  I  V  L  F  P  L  V  S  F  C  L  F  G  F  *  L  S  G  M  L  I  S  V  I  D  S  *  S  S  W  I  R  Y  K  H  T  Y  E  A  I  D  *  E  C  *  V  E  *  W  S  L  G  V  T  V  D  V  F  L  G  L  F  *  S  F  S  S  S  T  H  I  I  K  Y  C  *  V  Q  L  G  G  G  K  *  S  G  S  R  *  S  C  S  S  F  M  Q  N  *  K  I  E  G  A  R   </second_frame>
            <third_frame>   D  E  L  T  V  I  H  I  *  F  V  L  E  P  Y  C  F  T  H  H  Q  S  L  T  F  H  T  D  G  F  L  P  Q  H  N  S  M  L  H  G  S  T  R  L  K  V  Y  S  P  A  K  K  P  P  P  M  P  P  K  Y  P  F  P  S  H  S  L  S  F  :  D  L  R  M  N  W  A  E  Q  R  S  W  G  L  *  S  S  M  L  W  G  E  V  V  K  L  H  L  L  K  L  L  R  S  S  K  L  F  F  N  I  L  V  H  W  I  P  L  E  R  F  I  P  I  Y  F  S  S  L  Y  F  N  V  V  N  P  V  V  F  *  L  N  A  K  C  I  N  K  Y  F  M  *  L  L  Y  C  S  L  W  F  L  F  V  S  L  D  S  S  *  V  E  C  L  Y  P  L  *  I  H  K  A  V  G  F  V  I  N  I  P  T  K  R  L  T  R  S  V  E  L  N  D  G  V  *  G  *  P  L  M  F  F  L  V  C  F  K  A  L  V  P  L  R  T  *  *  S  I  V  K  C  S  W  E  E  E  N  D  Q  E  V  D  K  A  A  H  P  L  C  R  I  E  K  L  K  V  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14367" stop="14160"/>
                    <exon start="14036" stop="13867"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRTHSNSYMIRPRTLLFYSSSISHISHRWVSSTTQLHASWINKIKGVFTGQKTSTDAAKVPISESFTLLRFADELGRAKKLGTLKQYVVGRGSEVTFAEAFEKQQAILQYLGALDPTGEVYTHLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="53439" PGL_stop="56070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53439" e_stop="53594"/>
            <exon e_start="53746" e_stop="53879"/>
            <exon e_start="55119" e_stop="55398"/>
            <exon e_start="55657" e_stop="55863"/>
            <exon e_start="56006" e_stop="56070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.821"/>
          <exon-intron don_prob="0.995" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.988" e_score="0.971"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.821">
            <gDNA_exon_boundary e_start="53439" e_stop="53594" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53595" i_stop="53745" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53746" e_stop="53879" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.916">
            <gDNA_intron_boundary i_start="53880" i_stop="55118" i_length="1239"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55119" e_stop="55398" e_length="280"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="55399" i_stop="55656" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="55657" e_stop="55863" e_length="207"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.988">
            <gDNA_intron_boundary i_start="55864" i_stop="56005" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="56006" e_stop="56070" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53439" stop="53594"/>
              <exon start="53746" stop="53879"/>
              <exon start="55119" stop="55398"/>
              <exon start="55657" stop="55695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53484" stop="53594"/>
              <exon start="53746" stop="53879"/>
              <exon start="55119" stop="55398"/>
              <exon start="55657" stop="55795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53501" stop="53594"/>
              <exon start="53746" stop="53879"/>
              <exon start="55119" stop="55398"/>
              <exon start="55657" stop="55863"/>
              <exon start="56006" stop="56070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53502" stop="53594"/>
              <exon start="53746" stop="53879"/>
              <exon start="55119" stop="55398"/>
              <exon start="55657" stop="55663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53505" stop="53594"/>
              <exon start="53746" stop="53879"/>
              <exon start="55119" stop="55398"/>
              <exon start="55657" stop="55705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331733" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACTTACATGACTCATTTTAACTCTTCACATTCCCATTTCATAGGGAAAAAAAAAAGAAGCCTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAG : GTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAG : TGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAG : AGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATCCAGAAAACAAGAAGGTATATTGTCGATCAAATCTAAGCACCAACGGAAATGGGAAGGAAGAGTTTGCAGTAGATTATGACTATCTTGTCATTGCCACTGGAGCCCGTGTAAATACATTCAACATTCCTGGTGTTGAAGAGAACACCTTCTTCTTGAAG : GAAGTAGAAGATGCTCAAAAGATCCGTAGAACTGTTATTGACTGTTTTGAGAAAGCAAGTCTGCC</gDNA_template>
            <first_frame> R  T  Y  M  T  H  F  N  S  S  H  S  H  F  I  G  K  K  K  R  S  L  N  H  V  P  F  F  S  L  I  L  L  H  L  H  V  L  F  Q  Q  L  T  P  R  S  Q  Q  Q  L  S  Q  :  V  K  R  R  L  L  G  E  I  A  *  V  E  R  K  M  Q  R  V  T  V  I  E  R  F  S  K  T  F  R  D  N  P  S  L  S  K  L  L  I  V  F  T  V  S :   G  G  G  L  V  A  Y  S  E  A  G  K  S  N  D  N  S  N  A  G  A  L  V  E  A  N  N  R  K  K  K  V  V  V  L  G  T  G  W  A  G  T  S  F  L  K  N  L  K  D  P  S  Y  D  V  Q  V  I  S  P  R  N  Y  F  A  F  T  P  L  L  P  S  V  T  C  G  T  V  E  S  R  S  V  V  E  P  I  R  N  I  I  R  K  :  R  Y  A  E  A  Y  Y  W  E  A  E  C  I  K  I  D  P  E  N  K  K  V  Y  C  R  S  N  L  S  T  N  G  N  G  K  E  E  F  A  V  D  Y  D  Y  L  V  I  A  T  G  A  R  V  N  T  F  N  I  P  G  V  E  E  N  T  F  F  L  K  :  E  V  E  D  A  Q  K  I  R  R  T  V  I  D  C  F  E  K  A  S  L   </first_frame>
            <second_frame>  E  L  T  *  L  I  L  T  L  H  I  P  I  S  *  G  K  K  K  E  A  S  T  T  F  P  S  S  H  *  F  F  S  I  F  T  F  S  F  N  N  S  H  H  V  R  N  S  N  S  L  R :   *  R  E  G  C  *  V  R  S  R  K  L  N  A  K  C  R  E  *  R  *  L  R  D  F  L  K  L  S  V  I  I  L  P  F  L  S  S  S  L  F  S  L  S   : V  V  E  V  L  W  H  T  P  R  Q  E  N  R  M  T  I  Q  M  L  E  H  W  L  R  P  T  T  E  K  R  K  L  L  S  L  E  L  V  G  L  E  P  V  S  *  R  I  *  R  I  L  H  M  M  S  K  *  Y  L  Q  E  I  T  L  H  S  P  L  C  F  Q  V  L  H  V  A  R  *  K  V  A  V  L  L  N  Q  F  V  T  L  S  E  R :   D  M  Q  R  P  I  T  G  K  L  N  V  S  K  L  I  Q  K  T  R  R  Y  I  V  D  Q  I  *  A  P  T  E  M  G  R  K  S  L  Q  *  I  M  T  I  L  S  L  P  L  E  P  V  *  I  H  S  T  F  L  V  L  K  R  T  P  S  S  *  R :   K  *  K  M  L  K  R  S  V  E  L  L  L  T  V  L  R  K  Q  V  C  </second_frame>
            <third_frame>   N  L  H  D  S  F  *  L  F  T  F  P  F  H  R  E  K  K  K  K  P  Q  P  R  S  L  L  L  I  D  S  S  P  S  S  R  S  L  S  T  T  H  T  T  F  A  T  A  T  L  S   : G  E  E  K  V  A  R  *  D  R  V  S  *  T  Q  N  A  E  S  N  G  D  *  E  I  F  *  N  F  P  *  *  S  F  P  F  *  A  P  H  C  F  H  C  Q  :  W  W  R  S  C  G  I  L  R  G  R  K  I  E  *  Q  F  K  C  W  S  I  G  *  G  Q  Q  Q  K  K  E  S  C  C  P  W  N  W  L  G  W  N  Q  F  L  E  E  S  E  G  S  F  I  *  C  P  S  N  I  S  K  K  L  L  C  I  H  P  F  A  S  K  C  Y  M  W  H  G  R  K  S  Q  C  C  *  T  N  S  *  H  Y  Q  K   : E  I  C  R  G  L  L  L  G  S  *  M  Y  Q  N  *  S  R  K  Q  E  G  I  L  S  I  K  S  K  H  Q  R  K  W  E  G  R  V  C  S  R  L  *  L  S  C  H  C  H  W  S  P  C  K  Y  I  Q  H  S  W  C  *  R  E  H  L  L  L  E   : G  S  R  R  C  S  K  D  P  *  N  C  Y  *  L  F  *  E  S  K  S  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53779" stop="53879"/>
                    <exon start="55119" stop="55398"/>
                    <exon start="55657" stop="55863"/>
                    <exon start="56006" stop="56068"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VERKMQRVTVIERFSKTFRDNPSLSKLLIVFTVSGGGLVAYSEAGKSNDNSNAGALVEANNRKKKVVVLGTGWAGTSFLKNLKDPSYDVQVISPRNYFAFTPLLPSVTCGTVESRSVVEPIRNIIRKRYAEAYYWEAECIKIDPENKKVYCRSNLSTNGNGKEEFAVDYDYLVIATGARVNTFNIPGVEENTFFLKEVEDAQKIRRTVIDCFEKASL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="56188" PGL_stop="59456"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56188" e_stop="56256"/>
            <exon e_start="57161" e_stop="57380"/>
            <exon e_start="57474" e_stop="57578"/>
            <exon e_start="58009" e_stop="58281"/>
            <exon e_start="58381" e_stop="58502"/>
            <exon e_start="58788" e_stop="58907"/>
            <exon e_start="59001" e_stop="59456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.905" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56188" e_stop="56256" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56257" i_stop="57160" i_length="904"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57161" e_stop="57380" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57381" i_stop="57473" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57474" e_stop="57578" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="57579" i_stop="58008" i_length="430"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58009" e_stop="58281" e_length="273"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.933">
            <gDNA_intron_boundary i_start="58282" i_stop="58380" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58381" e_stop="58502" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58503" i_stop="58787" i_length="285"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58788" e_stop="58907" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.872" acc_prob="0.905">
            <gDNA_intron_boundary i_start="58908" i_stop="59000" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="59001" e_stop="59456" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56188" stop="56256"/>
              <exon start="57161" stop="57380"/>
              <exon start="57474" stop="57578"/>
              <exon start="58009" stop="58112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56190" stop="56256"/>
              <exon start="57161" stop="57380"/>
              <exon start="57474" stop="57578"/>
              <exon start="58009" stop="58139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57161" stop="57380"/>
              <exon start="57474" stop="57578"/>
              <exon start="58009" stop="58281"/>
              <exon start="58381" stop="58449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57161" stop="57380"/>
              <exon start="57474" stop="57578"/>
              <exon start="58009" stop="58203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57161" stop="57380"/>
              <exon start="57474" stop="57578"/>
              <exon start="58009" stop="58149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57474" stop="57578"/>
              <exon start="58009" stop="58281"/>
              <exon start="58381" stop="58502"/>
              <exon start="58788" stop="58907"/>
              <exon start="59001" stop="59277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58129" stop="58281"/>
              <exon start="58381" stop="58502"/>
              <exon start="58788" stop="58907"/>
              <exon start="59001" stop="59454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58266" stop="58281"/>
              <exon start="58381" stop="58502"/>
              <exon start="58788" stop="58907"/>
              <exon start="59001" stop="59456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59098" stop="59450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59098" stop="59433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGTACCCTAAGGTCAAAGATCTGGTGAAGATAACACTTCTTGAGGCAACAGATCATATTTTGAACAT : GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAG : GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG : GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAG : GTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAG : GTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAG : CAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGGATGAAGTAACTAAATCATTGCTG</gDNA_template>
            <first_frame> A  V  P  *  G  Q  R  S  G  E  D  N  T  S  *  G  N  R  S  Y  F  E  H  :  V  *  Q  K  N  Y  C  F  C  *  R  K  I  P  Q  R  W  Y  *  C  E  N  R  V  N  G  C  E  G  R  R  K  R  N  F  Y  Q  G  C  *  A  W  R  N  N  F  Y  A  L  W  N  G  C  L  V  Y  W  Y  W  N  S  S  S  N  Y  G  V  Y  E  A  H  W  S   : G  K  Q  T  S  V  S  N  R  *  V  A  A  C  *  G  T  G  E  R  I  C  T  W  *  L  C  N  N  Q  P  A  Q  S  H   : G  R  Y  C  C  Y  I  S  K  S  R  Q  R  *  L  W  N  T  Y  S  Q  R  I  S  G  S  P  *  *  H  M  *  K  I  P  A  G  G  A  L  L  E  K  *  K  N  E  *  S  C  R  S  L  E  R  I  E  R  *  W  C  *  R  V  D  *  G  G  H  *  R  I  *  I  C  S  V  P  S  G  Y  *  Y  E  E  S  S  S  N  S  S   : G  C  I  S  A  R  C  L  L  S  *  M  L  *  S  Y  G  G  M  *  K  K  S  G  R  S  S  S  V  *  R  R  R  P  P  S  L  S  P  I  Q  :  V  P  T  F  G  T  V  C  T  F  G  R  R  A  N  S  S  T  T  S  R  R  L  G  F  N  W  S  *  Q  S  V  A  M  V  F  C  V  C  *  :  Q  T  S  Q  L  A  Y  K  G  I  G  C  L  *  L  G  K  T  V  H  I  W  K  R  L  E  P  D  L  R  C  Y  A  P  V  D  L  S  *  N  S  I  R  L  L  P  K  V  F  *  C  E  S  *  R  I  C  L  F  N  S  F  T  K  Q  L  G  I  G  R  L  W  V  S  C  H  H  N  F  A  A  T  R  T  *  R  T  Q  F  S  I  I  A  S  *  *  R  *  N  E  H  L  *  E  G  C  *  I  V  I  *  I  I  P  Y  I  A  Q  V  F  Y  F  E  *  H  P  A  K  P  L  M  S  Q  C  L  M  E  Y  K  F  W  Y  F  L  D  E  V  T  K  S  L  L </first_frame>
            <second_frame>  L  Y  P  K  V  K  D  L  V  K  I  T  L  L  E  A  T  D  H  I  L  N  M :   F  D  K  R  I  T  A  F  A  E  E  K  F  H  R  D  G  I  D  V  K  T  G  S  M  V  V  K  V  G  E  K  E  I  S  T  K  D  V  K  R  G  E  I  T  S  M  P  Y  G  M  A  V  W  S  T  G  I  G  T  R  P  V  I  M  E  F  M  K  H  I  G  Q  :  G  S  R  R  V  L  A  T  D  E  W  L  R  V  E  G  Q  E  N  V  Y  A  L  G  D  C  A  T  I  N  Q  R  K  V  M  :  E  D  I  A  A  I  F  Q  K  A  D  K  D  N  S  G  T  L  T  V  K  E  F  Q  E  V  L  N  D  I  C  E  R  Y  P  Q  V  E  L  Y  L  K  N  K  K  M  S  N  L  V  D  L  L  K  E  S  K  G  N  G  V  K  E  S  I  E  V  D  I  E  E  F  K  S  A  L  S  Q  V  D  T  D  M  K  N  L  P  A  T  A  Q  :  V  A  S  Q  Q  G  V  Y  L  A  K  C  F  N  R  M  E  E  C  E  K  N  P  E  G  P  L  R  F  R  G  E  G  R  H  R  F  H  P  F  R :   Y  R  H  L  G  Q  F  A  P  L  G  G  E  Q  T  A  A  Q  L  P  G  D  W  V  S  I  G  H  S  S  Q  W  L  W  Y  S  V  Y  A  S :   K  Q  V  S  W  R  T  R  A  L  V  V  S  D  W  V  R  R  F  I  F  G  R  D  S  S  Q  I  *  G  V  T  P  Q  W  I  Y  L  E  I  P  L  G  C  Y  Q  K  F  F  D  V  N  P  N  G  F  V  C  L  I  L  L  P  N  N  L  A  L  V  V  C  G  F  P  A  I  T  I  L  Q  L  H  E  H  R  E  P  N  F  L  *  L  H  H  N  K  G  E  M  N  I  Y  R  R  D  V  K  L  *  F  E  L  F  H  I  L  L  R  C  S  I  L  N  N  I  R  L  S  L  *  C  H  N  V  *  W  S  I  S  F  G  I  F  W  M  K  *  L  N  H  C   </second_frame>
            <third_frame>   C  T  L  R  S  K  I  W  *  R  *  H  F  L  R  Q  Q  I  I  F  *  T   : C  L  T  K  E  L  L  L  L  L  K  K  N  S  T  E  M  V  L  M  *  K  Q  G  Q  W  L  *  R  *  E  K  K  K  F  L  P  R  M  L  S  V  E  K  *  L  L  C  L  M  E  W  L  S  G  L  L  V  L  E  L  V  Q  *  L  W  S  L  *  S  T  L  V  R :   E  A  D  E  C  *  Q  P  M  S  G  C  V  L  R  D  R  R  T  Y  M  H  L  V  T  V  Q  Q  S  T  S  A  K  S  W :   K  I  L  L  L  Y  F  K  K  Q  T  K  I  T  L  E  H  L  Q  S  K  N  F  R  K  S  L  M  T  Y  V  K  D  T  R  R  W  S  F  T  *  K  I  K  K  *  V  I  L  S  I  S  *  K  N  R  K  V  M  V  L  K  S  R  L  R  W  T  L  K  N  L  N  L  L  C  P  K  W  I  L  I  *  R  I  F  Q  Q  Q  L  R :   L  H  L  S  K  V  S  T  *  L  N  A  L  I  V  W  R  N  V  K  K  I  R  K  V  L  F  G  L  E  E  K  A  A  I  A  F  T  H  S   : G  T  D  I  W  D  S  L  H  L  W  E  E  S  K  Q  Q  H  N  F  Q  E  I  G  F  Q  L  V  I  A  V  S  G  Y  G  I  L  C  M  L   : A  N  K  S  V  G  V  Q  G  H  W  L  S  L  T  G  *  D  G  S  Y  L  E  E  T  R  A  R  F  K  V  L  R  P  S  G  F  I  L  K  F  H  *  A  V  T  K  S  F  L  M  *  I  L  T  D  L  F  V  *  F  F  Y  Q  T  T  W  H  W  S  F  V  G  F  L  P  S  Q  F  C  S  Y  T  N  I  E  N  P  I  F  Y  N  C  I  I  I  K  V  K  *  T  S  I  G  G  M  L  N  C  N  L  N  Y  S  I  Y  C  S  G  V  L  F  *  I  T  S  G  *  A  F  N  V  T  M  F  N  G  V  *  V  L  V  F  F  G  *  S  N  *  I  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56189" stop="56256"/>
                    <exon start="57161" stop="57380"/>
                    <exon start="57474" stop="57578"/>
                    <exon start="58009" stop="58281"/>
                    <exon start="58381" stop="58502"/>
                    <exon start="58788" stop="58907"/>
                    <exon start="59001" stop="59088"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYPKVKDLVKITLLEATDHILNMFDKRITAFAEEKFHRDGIDVKTGSMVVKVGEKEISTKDVKRGEITSMPYGMAVWSTGIGTRPVIMEFMKHIGQGSRRVLATDEWLRVEGQENVYALGDCATINQRKVMEDIAAIFQKADKDNSGTLTVKEFQEVLNDICERYPQVELYLKNKKMSNLVDLLKESKGNGVKESIEVDIEEFKSALSQVDTDMKNLPATAQVASQQGVYLAKCFNRMEECEKNPEGPLRFRGEGRHRFHPFRYRHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWVRRFIFGRDSSQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="73839" PGL_stop="77728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73839" e_stop="73874"/>
            <exon e_start="74405" e_stop="74936"/>
            <exon e_start="76248" e_stop="76743"/>
            <exon e_start="77551" e_stop="77728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.812" acc_prob="0.930" e_score="0.972"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.964"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.962"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="73839" e_stop="73874" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.812" acc_prob="0.930">
            <gDNA_intron_boundary i_start="73875" i_stop="74404" i_length="530"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="74405" e_stop="74936" e_length="532"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74937" i_stop="76247" i_length="1311"/>
          </intron>
          <exon e_serial="3" e_score="0.962">
            <gDNA_exon_boundary e_start="76248" e_stop="76743" e_length="496"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76744" i_stop="77550" i_length="807"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="77551" e_stop="77728" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73839" stop="73874"/>
              <exon start="74405" stop="74936"/>
              <exon start="76248" stop="76401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73844" stop="73874"/>
              <exon start="74405" stop="74862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76270" stop="76743"/>
              <exon start="77551" stop="77728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTGTCCACATTTTTCACCACTCTCAAGACTGAG : TTTTTCTTGAGATGGAAATGAATCCGAGCTTGAAAAAACCGAGGGAATCTGTAGATTTATCGAAAATGTCGGAGTTATCTCAGTCAGCATTCCCAGATGAGGTGTTGGAGAAGGTGTTGTCTCTTGTTCAGTCTCATAAAGACAGAAATTCAGCTTCATTGGTGTGCAAAGATTGGTATAATGCAGAGCGTTGGACAAGAACTAAGCTGTTTATTGGAAATTGCTATTCAGTTACTCCTGAGATTGTAGCAAGAAGATTTCCCAAGATTAAGAGTGTTACCCTTAAGGGGAAACCAAGATTTTCTGACTTTAATTTGGTACCTGAGAATTGGGGTGCTGATATTCAGGCTTGGCTTGATGTTTTTGCCAAAGTTTACCCCTTTCTTGAGGAGTTGAGATTGAAAAGAATGGCTGTTACTGATGAGAGTTTGGAGTTTTTGGCAAAATCATTTCTTGGATTTAAGGCTCTGTCATTGTTGAGTTGTGACGGTTTTAGCACTGATGGGATCGGTAGCATTGCTGCTCACTGCAA : GAACTTGACAGAGCTGGACATTCAGGAGAATGGCATGGATGATATTTCTGGTAGTTGGCTAAGTTGTTTTCCGGATGACTTTACATCACTGGAGGTGCTTAACTTTGCCAGTATGAACACTGAGATCAGTAAAGATGCTTTAGAGAGACTTGTCGGTAGATGCAAATCACTGAGGGTTCTGAAGGTGAACAAGAACGTCACCTTGCCTCAGTTACAACGCCTGCTCGTCCGGGCACCTCAGCTGATGGAGCTGGGTACAGGATGCTTTCTTCCAGATCAACTCACAAGTCGGCAGTATGAAGAACTTGAAAGTGCATTCAGCAACTGCAAACATCTGCACTCTCTTTCAGGTTTCTGGGAAGCAAATCGTCGATATTTACCATCTCTTTATGCAGCCTGTGCTAGTCTGACTTTCCTCAACTTGAGCTATGAAACCATTAGGAGTGGTGAACTTTCGAAGCTTCTTCTTCATTGCCCAAATTTAAGGCGCCTTTGG : GTCTTAGACACTGTCAATGATAAGGGGTTAGAGGCTGTTGGAACCAGCTGCCCATTGCTTGAAGAACTGCGAGTCTTTCCTGCTGACCCTTTTGAAGAGGATATGGACCATGGAGTGACGGAGTCAGGCTTTATAGCTGTGTCTGCTGGTTGTCCTAAGCTTCAATATGTTCTCTATT</gDNA_template>
            <first_frame> K  V  S  T  F  F  T  T  L  K  T  E  :  F  F  L  R  W  K  *  I  R  A  *  K  N  R  G  N  L  *  I  Y  R  K  C  R  S  Y  L  S  Q  H  S  Q  M  R  C  W  R  R  C  C  L  L  F  S  L  I  K  T  E  I  Q  L  H  W  C  A  K  I  G  I  M  Q  S  V  G  Q  E  L  S  C  L  L  E  I  A  I  Q  L  L  L  R  L  *  Q  E  D  F  P  R  L  R  V  L  P  L  R  G  N  Q  D  F  L  T  L  I  W  Y  L  R  I  G  V  L  I  F  R  L  G  L  M  F  L  P  K  F  T  P  F  L  R  S  *  D  *  K  E  W  L  L  L  M  R  V  W  S  F  W  Q  N  H  F  L  D  L  R  L  C  H  C  *  V  V  T  V  L  A  L  M  G  S  V  A  L  L  L  T  A   : R  T  *  Q  S  W  T  F  R  R  M  A  W  M  I  F  L  V  V  G  *  V  V  F  R  M  T  L  H  H  W  R  C  L  T  L  P  V  *  T  L  R  S  V  K  M  L  *  R  D  L  S  V  D  A  N  H  *  G  F  *  R  *  T  R  T  S  P  C  L  S  Y  N  A  C  S  S  G  H  L  S  *  W  S  W  V  Q  D  A  F  F  Q  I  N  S  Q  V  G  S  M  K  N  L  K  V  H  S  A  T  A  N  I  C  T  L  F  Q  V  S  G  K  Q  I  V  D  I  Y  H  L  F  M  Q  P  V  L  V  *  L  S  S  T  *  A  M  K  P  L  G  V  V  N  F  R  S  F  F  F  I  A  Q  I  *  G  A  F  G :   S  *  T  L  S  M  I  R  G  *  R  L  L  E  P  A  A  H  C  L  K  N  C  E  S  F  L  L  T  L  L  K  R  I  W  T  M  E  *  R  S  Q  A  L  *  L  C  L  L  V  V  L  S  F  N  M  F  S  I </first_frame>
            <second_frame>  K  C  P  H  F  S  P  L  S  R  L  S :   F  S  *  D  G  N  E  S  E  L  E  K  T  E  G  I  C  R  F  I  E  N  V  G  V  I  S  V  S  I  P  R  *  G  V  G  E  G  V  V  S  C  S  V  S  *  R  Q  K  F  S  F  I  G  V  Q  R  L  V  *  C  R  A  L  D  K  N  *  A  V  Y  W  K  L  L  F  S  Y  S  *  D  C  S  K  K  I  S  Q  D  *  E  C  Y  P  *  G  E  T  K  I  F  *  L  *  F  G  T  *  E  L  G  C  *  Y  S  G  L  A  *  C  F  C  Q  S  L  P  L  S  *  G  V  E  I  E  K  N  G  C  Y  *  *  E  F  G  V  F  G  K  I  I  S  W  I  *  G  S  V  I  V  E  L  *  R  F  *  H  *  W  D  R  *  H  C  C  S  L  Q  :  E  L  D  R  A  G  H  S  G  E  W  H  G  *  Y  F  W  *  L  A  K  L  F  S  G  *  L  Y  I  T  G  G  A  *  L  C  Q  Y  E  H  *  D  Q  *  R  C  F  R  E  T  C  R  *  M  Q  I  T  E  G  S  E  G  E  Q  E  R  H  L  A  S  V  T  T  P  A  R  P  G  T  S  A  D  G  A  G  Y  R  M  L  S  S  R  S  T  H  K  S  A  V  *  R  T  *  K  C  I  Q  Q  L  Q  T  S  A  L  S  F  R  F  L  G  S  K  S  S  I  F  T  I  S  L  C  S  L  C  *  S  D  F  P  Q  L  E  L  *  N  H  *  E  W  *  T  F  E  A  S  S  S  L  P  K  F  K  A  P  L   : G  L  R  H  C  Q  *  *  G  V  R  G  C  W  N  Q  L  P  I  A  *  R  T  A  S  L  S  C  *  P  F  *  R  G  Y  G  P  W  S  D  G  V  R  L  Y  S  C  V  C  W  L  S  *  A  S  I  C  S  L   </second_frame>
            <third_frame>   S  V  H  I  F  H  H  S  Q  D  *   : V  F  L  E  M  E  M  N  P  S  L  K  K  P  R  E  S  V  D  L  S  K  M  S  E  L  S  Q  S  A  F  P  D  E  V  L  E  K  V  L  S  L  V  Q  S  H  K  D  R  N  S  A  S  L  V  C  K  D  W  Y  N  A  E  R  W  T  R  T  K  L  F  I  G  N  C  Y  S  V  T  P  E  I  V  A  R  R  F  P  K  I  K  S  V  T  L  K  G  K  P  R  F  S  D  F  N  L  V  P  E  N  W  G  A  D  I  Q  A  W  L  D  V  F  A  K  V  Y  P  F  L  E  E  L  R  L  K  R  M  A  V  T  D  E  S  L  E  F  L  A  K  S  F  L  G  F  K  A  L  S  L  L  S  C  D  G  F  S  T  D  G  I  G  S  I  A  A  H  C  K :   N  L  T  E  L  D  I  Q  E  N  G  M  D  D  I  S  G  S  W  L  S  C  F  P  D  D  F  T  S  L  E  V  L  N  F  A  S  M  N  T  E  I  S  K  D  A  L  E  R  L  V  G  R  C  K  S  L  R  V  L  K  V  N  K  N  V  T  L  P  Q  L  Q  R  L  L  V  R  A  P  Q  L  M  E  L  G  T  G  C  F  L  P  D  Q  L  T  S  R  Q  Y  E  E  L  E  S  A  F  S  N  C  K  H  L  H  S  L  S  G  F  W  E  A  N  R  R  Y  L  P  S  L  Y  A  A  C  A  S  L  T  F  L  N  L  S  Y  E  T  I  R  S  G  E  L  S  K  L  L  L  H  C  P  N  L  R  R  L  W  :  V  L  D  T  V  N  D  K  G  L  E  A  V  G  T  S  C  P  L  L  E  E  L  R  V  F  P  A  D  P  F  E  E  D  M  D  H  G  V  T  E  S  G  F  I  A  V  S  A  G  C  P  K  L  Q  Y  V  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73874" stop="74936"/>
                    <exon start="76248" stop="76743"/>
                    <exon start="77551" stop="77727"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLEMEMNPSLKKPRESVDLSKMSELSQSAFPDEVLEKVLSLVQSHKDRNSASLVCKDWYNAERWTRTKLFIGNCYSVTPEIVARRFPKIKSVTLKGKPRFSDFNLVPENWGADIQAWLDVFAKVYPFLEELRLKRMAVTDESLEFLAKSFLGFKALSLLSCDGFSTDGIGSIAAHCKNLTELDIQENGMDDISGSWLSCFPDDFTSLEVLNFASMNTEISKDALERLVGRCKSLRVLKVNKNVTLPQLQRLLVRAPQLMELGTGCFLPDQLTSRQYEELESAFSNCKHLHSLSGFWEANRRYLPSLYAACASLTFLNLSYETIRSGELSKLLLHCPNLRRLWVLDTVNDKGLEAVGTSCPLLEELRVFPADPFEEDMDHGVTESGFIAVSAGCPKLQYVLY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="77770" PGL_stop="78257"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77770" e_stop="78257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="77770" e_stop="78257" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77770" stop="78257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341048" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATAACTGCCCCAATTTCACCCATTTTCGTCTCTGTATAATGAGCCCTGGCCAGCCAGATTACTTGACAAATGAACCCATGGATGAGGCATTTGGTGCAGTGGTCAAGACTTGTAAAAAGCTCCAGAGGCTTTCTGTTTCTGGACGGTTGACTGACCTGACCTTTGAGTATATTGGGAAGTATGCCAAAAACCTTGAGACACTTTCAGTTGCTTTTTCTGGCGGCACTGACTGGGGTATGCAGTGCGTGCTCGACGGCTGTTCTAAGCTGAGGAAGCTGGAGATAAGGGATTCTCCATTTGGAAATGCAGCACTTCTTTCTGGAATGGGGAAGTATGAATCAATGCGGTGTCTTTGGATGTCAGCTTGCAGGGTCACCATGAATGGTTGTAGAATACTTGCACGAGAGAGACCTAGGTTGAATGTCGAGGTAATCAAAGATGAGCACAGCGATGACTATGCTGATAAATTATACGTCTATCGTTCTGT</gDNA_template>
            <first_frame> H  N  C  P  N  F  T  H  F  R  L  C  I  M  S  P  G  Q  P  D  Y  L  T  N  E  P  M  D  E  A  F  G  A  V  V  K  T  C  K  K  L  Q  R  L  S  V  S  G  R  L  T  D  L  T  F  E  Y  I  G  K  Y  A  K  N  L  E  T  L  S  V  A  F  S  G  G  T  D  W  G  M  Q  C  V  L  D  G  C  S  K  L  R  K  L  E  I  R  D  S  P  F  G  N  A  A  L  L  S  G  M  G  K  Y  E  S  M  R  C  L  W  M  S  A  C  R  V  T  M  N  G  C  R  I  L  A  R  E  R  P  R  L  N  V  E  V  I  K  D  E  H  S  D  D  Y  A  D  K  L  Y  V  Y  R  S   </first_frame>
            <second_frame>  I  T  A  P  I  S  P  I  F  V  S  V  *  *  A  L  A  S  Q  I  T  *  Q  M  N  P  W  M  R  H  L  V  Q  W  S  R  L  V  K  S  S  R  G  F  L  F  L  D  G  *  L  T  *  P  L  S  I  L  G  S  M  P  K  T  L  R  H  F  Q  L  L  F  L  A  A  L  T  G  V  C  S  A  C  S  T  A  V  L  S  *  G  S  W  R  *  G  I  L  H  L  E  M  Q  H  F  F  L  E  W  G  S  M  N  Q  C  G  V  F  G  C  Q  L  A  G  S  P  *  M  V  V  E  Y  L  H  E  R  D  L  G  *  M  S  R  *  S  K  M  S  T  A  M  T  M  L  I  N  Y  T  S  I  V  L  </second_frame>
            <third_frame>   *  L  P  Q  F  H  P  F  S  S  L  Y  N  E  P  W  P  A  R  L  L  D  K  *  T  H  G  *  G  I  W  C  S  G  Q  D  L  *  K  A  P  E  A  F  C  F  W  T  V  D  *  P  D  L  *  V  Y  W  E  V  C  Q  K  P  *  D  T  F  S  C  F  F  W  R  H  *  L  G  Y  A  V  R  A  R  R  L  F  *  A  E  E  A  G  D  K  G  F  S  I  W  K  C  S  T  S  F  W  N  G  E  V  *  I  N  A  V  S  L  D  V  S  L  Q  G  H  H  E  W  L  *  N  T  C  T  R  E  T  *  V  E  C  R  G  N  Q  R  *  A  Q  R  *  L  C  *  *  I  I  R  L  S  F  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77770" stop="78255"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNCPNFTHFRLCIMSPGQPDYLTNEPMDEAFGAVVKTCKKLQRLSVSGRLTDLTFEYIGKYAKNLETLSVAFSGGTDWGMQCVLDGCSKLRKLEIRDSPFGNAALLSGMGKYESMRCLWMSACRVTMNGCRILARERPRLNVEVIKDEHSDDYADKLYVYRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="87495" PGL_stop="88449"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87495" e_stop="88449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="87495" e_stop="88449" e_length="955"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87495" stop="88189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87511" stop="88071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87723" stop="88449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87838" stop="88357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCATCCCAAATCTCTATCTAATTCGCCGGAATCTTCACTTCTCCGACCACATCTCGCCGGAGAATGGAATTCAGGGAAGACGAATGAAATCCATCATGTCTACTCTACCGGAAAATGCAGAAAATCCAGTTGGGTCATCCGCCGGAAAATCAAGAATCCGGCGAGTTAATGAGTTCATTTCTTCACTTATATCTCTTTCGTATTCAATCAAAGTTTTCCCTGTGAAATGGCAATCGATACGAAGCAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCTATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTTAGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAAGCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATTTCTGCTGGAATAATTTCCCCTTTGATTAGAGTTTTGGAGTGTGGGATTGGGTTGAGTAAAGAATTTGCCACCAGGTGTTTGCAAAAGCTCACAGAGAACTCAGATAATGCATGGTCAATTTCAGCTCATGGTGGGGTTACTGTTTTG</gDNA_template>
            <first_frame> F  F  H  P  K  S  L  S  N  S  P  E  S  S  L  L  R  P  H  L  A  G  E  W  N  S  G  K  T  N  E  I  H  H  V  Y  S  T  G  K  C  R  K  S  S  W  V  I  R  R  K  I  K  N  P  A  S  *  *  V  H  F  F  T  Y  I  S  F  V  F  N  Q  S  F  P  C  E  M  A  I  D  T  K  Q  A  *  R  A  S  F  E  F  I  C  Y  *  E  L  *  F  H  R  K  L  P  S  T  L  Q  L  P  S  G  H  Y  S  Y  P  Q  E  L  P  *  T  F  S  A  L  C  *  V  F  L  *  W  E  T  A  D  A  E  *  S  *  Y  S  F  Y  K  I  R  Q  S  Y  K  E  Y  F  *  D  L  L  S  W  F  A  Y  S  K  L  C  H  Y  C  S  K  A  Q  S  W  S  F  S  *  *  Y  Q  V  L  Y  *  G  F  V  V  K  G  Q  D  W  V  F  R  D  E  E  T  R  V  D  C  F  E  *  N  Y  S  R  R  *  *  V  C  *  S  C  N  *  N  *  *  P  C  F  C  V  S  E  F  S  *  F  A  R  R  *  S  S  R  R  S  S  *  G  I  I  C  N  S  R  V  S  I  F  *  K  L  F  D  F  C  W  N  N  F  P  F  D  *  S  F  G  V  W  D  W  V  E  *  R  I  C  H  Q  V  F  A  K  A  H  R  E  L  R  *  C  M  V  N  F  S  S  W  W  G  Y  C  F  </first_frame>
            <second_frame>  F  F  I  P  N  L  Y  L  I  R  R  N  L  H  F  S  D  H  I  S  P  E  N  G  I  Q  G  R  R  M  K  S  I  M  S  T  L  P  E  N  A  E  N  P  V  G  S  S  A  G  K  S  R  I  R  R  V  N  E  F  I  S  S  L  I  S  L  S  Y  S  I  K  V  F  P  V  K  W  Q  S  I  R  S  K  L  E  E  L  L  S  S  L  S  A  I  E  N  C  D  S  T  E  N  Y  P  P  L  C  S  S  L  Q  A  I  T  A  T  L  K  N  C  H  E  L  S  R  H  C  V  E  F  S  Y  S  G  K  L  L  M  Q  S  D  L  D  I  V  S  T  K  L  D  N  H  I  K  S  I  S  E  I  Y  S  L  G  L  L  T  Q  S  S  A  I  I  V  P  K  P  N  L  G  A  S  R  D  D  I  K  F  Y  I  R  D  L  L  S  R  V  K  I  G  S  S  E  M  K  K  Q  G  L  I  A  L  N  E  I  I  Q  E  D  D  R  Y  V  K  V  A  I  E  I  D  N  L  V  S  V  L  V  S  F  L  D  L  Q  E  D  N  L  Q  E  E  A  A  K  A  L  S  V  I  A  G  F  Q  S  F  R  S  C  L  I  S  A  G  I  I  S  P  L  I  R  V  L  E  C  G  I  G  L  S  K  E  F  A  T  R  C  L  Q  K  L  T  E  N  S  D  N  A  W  S  I  S  A  H  G  G  V  T  V  L </second_frame>
            <third_frame>   F  S  S  Q  I  S  I  *  F  A  G  I  F  T  S  P  T  T  S  R  R  R  M  E  F  R  E  D  E  *  N  P  S  C  L  L  Y  R  K  M  Q  K  I  Q  L  G  H  P  P  E  N  Q  E  S  G  E  L  M  S  S  F  L  H  L  Y  L  F  R  I  Q  S  K  F  S  L  *  N  G  N  R  Y  E  A  S  L  K  S  F  F  R  V  Y  L  L  L  R  I  V  I  P  Q  K  T  T  L  H  S  A  A  P  F  R  P  L  Q  L  P  S  R  I  A  M  N  F  L  G  I  V  L  S  F  L  I  V  G  N  C  *  C  R  V  I  L  I  *  F  L  Q  N  *  T  I  I  *  R  V  F  L  R  F  T  L  L  V  C  L  L  K  A  L  P  L  L  F  Q  S  P  I  L  E  L  L  V  M  I  S  S  F  I  L  G  I  C  C  Q  G  S  R  L  G  L  Q  R  *  R  N  K  G  *  L  L  *  M  K  L  F  K  K  M  I  G  M  L  K  L  Q  L  K  L  I  T  L  F  L  C  *  *  V  F  L  I  C  K  K  I  I  F  K  K  K  Q  L  R  H  Y  L  *  *  Q  G  F  N  L  L  E  V  V  *  F  L  L  E  *  F  P  L  *  L  E  F  W  S  V  G  L  G  *  V  K  N  L  P  P  G  V  C  K  S  S  Q  R  T  Q  I  M  H  G  Q  F  Q  L  M  V  G  L  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87496" stop="88449"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFIPNLYLIRRNLHFSDHISPENGIQGRRMKSIMSTLPENAENPVGSSAGKSRIRRVNEFISSLISLSYSIKVFPVKWQSIRSKLEELLSSLSAIENCDSTENYPPLCSSLQAITATLKNCHELSRHCVEFSYSGKLLMQSDLDIVSTKLDNHIKSISEIYSLGLLTQSSAIIVPKPNLGASRDDIKFYIRDLLSRVKIGSSEMKKQGLIALNEIIQEDDRYVKVAIEIDNLVSVLVSFLDLQEDNLQEEAAKALSVIAGFQSFRSCLISAGIISPLIRVLECGIGLSKEFATRCLQKLTENSDNAWSISAHGGVTVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="88923" PGL_stop="89454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88923" e_stop="89454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="88923" e_stop="89454" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88923" stop="89454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88923" stop="89454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTAATGGGGGATGCTGGATTTATGCCTGAGTTGGTGAAGTTTCTAGATTCAAAGTCATATGAGGTTAGAGAAATGGCAGCTGAAACACTATCAAGTATGGTGATTGTACCAAGAAACCAAAAGAGATTTGGACAGAATGATCAAAATGTTGGTTTGCTGCTGCAAATGCTTGATCCAGAAGAGGCAAATTTTGGCAACAAAAAGCTGTTGCTTTCTATACTCATGTCATTAACAAGCTGCAATAGTGCCAGAAAGAAAATTGCAAACTCAGGGTATCTGATAAACATTGAAAAGTTAGCTGAGGCTGAAGTTTCAGATGCAAAAAAGATAGTCAGAAAATTGTCTTCCAATAGATTCAGAAGCATTCTCAGTGGAATCTGGCATTCATAATCAATGTAATTCAATTTTGTCTTATGCTTAACTATTTACCAAAACCAAAAATCAGAAAGGAGATCTTATGTAATATAAACCAAGATAAATGTATTTTATTGTTAAGAAAGAACTTTTAGAACATCCCCTTTTGCCTTTTTA</gDNA_template>
            <first_frame> A  N  G  G  C  W  I  Y  A  *  V  G  E  V  S  R  F  K  V  I  *  G  *  R  N  G  S  *  N  T  I  K  Y  G  D  C  T  K  K  P  K  E  I  W  T  E  *  S  K  C  W  F  A  A  A  N  A  *  S  R  R  G  K  F  W  Q  Q  K  A  V  A  F  Y  T  H  V  I  N  K  L  Q  *  C  Q  K  E  N  C  K  L  R  V  S  D  K  H  *  K  V  S  *  G  *  S  F  R  C  K  K  D  S  Q  K  I  V  F  Q  *  I  Q  K  H  S  Q  W  N  L  A  F  I  I  N  V  I  Q  F  C  L  M  L  N  Y  L  P  K  P  K  I  R  K  E  I  L  C  N  I  N  Q  D  K  C  I  L  L  L  R  K  N  F  *  N  I  P  F  C  L  F  </first_frame>
            <second_frame>  L  M  G  D  A  G  F  M  P  E  L  V  K  F  L  D  S  K  S  Y  E  V  R  E  M  A  A  E  T  L  S  S  M  V  I  V  P  R  N  Q  K  R  F  G  Q  N  D  Q  N  V  G  L  L  L  Q  M  L  D  P  E  E  A  N  F  G  N  K  K  L  L  L  S  I  L  M  S  L  T  S  C  N  S  A  R  K  K  I  A  N  S  G  Y  L  I  N  I  E  K  L  A  E  A  E  V  S  D  A  K  K  I  V  R  K  L  S  S  N  R  F  R  S  I  L  S  G  I  W  H  S  *  S  M  *  F  N  F  V  L  C  L  T  I  Y  Q  N  Q  K  S  E  R  R  S  Y  V  I  *  T  K  I  N  V  F  Y  C  *  E  R  T  F  R  T  S  P  F  A  F  L </second_frame>
            <third_frame>   *  W  G  M  L  D  L  C  L  S  W  *  S  F  *  I  Q  S  H  M  R  L  E  K  W  Q  L  K  H  Y  Q  V  W  *  L  Y  Q  E  T  K  R  D  L  D  R  M  I  K  M  L  V  C  C  C  K  C  L  I  Q  K  R  Q  I  L  A  T  K  S  C  C  F  L  Y  S  C  H  *  Q  A  A  I  V  P  E  R  K  L  Q  T  Q  G  I  *  *  T  L  K  S  *  L  R  L  K  F  Q  M  Q  K  R  *  S  E  N  C  L  P  I  D  S  E  A  F  S  V  E  S  G  I  H  N  Q  C  N  S  I  L  S  Y  A  *  L  F  T  K  T  K  N  Q  K  G  D  L  M  *  Y  K  P  R  *  M  Y  F  I  V  K  K  E  L  L  E  H  P  L  L  P  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88924" stop="89313"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMGDAGFMPELVKFLDSKSYEVREMAAETLSSMVIVPRNQKRFGQNDQNVGLLLQMLDPEEANFGNKKLLLSILMSLTSCNSARKKIANSGYLINIEKLAEAEVSDAKKIVRKLSSNRFRSILSGIWHS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="94889" PGL_stop="89433"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94889" e_stop="94442"/>
            <exon e_start="93766" e_stop="93669"/>
            <exon e_start="93583" e_stop="93518"/>
            <exon e_start="93407" e_stop="92587"/>
            <exon e_start="91372" e_stop="91074"/>
            <exon e_start="89470" e_stop="89433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.941"/>
          <exon-intron don_prob="0.859" acc_prob="0.968" e_score="0.990"/>
          <exon-intron don_prob="0.827" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.943" e_score="0.983"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="94889" e_stop="94442" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94441" i_stop="93767" i_length="675"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="93766" e_stop="93669" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.859" acc_prob="0.968">
            <gDNA_intron_boundary i_start="93668" i_stop="93584" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93583" e_stop="93518" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.827" acc_prob="0.968">
            <gDNA_intron_boundary i_start="93517" i_stop="93408" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93407" e_stop="92587" e_length="821"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="92586" i_stop="91373" i_length="1214"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="91372" e_stop="91074" e_length="299"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.943">
            <gDNA_intron_boundary i_start="91073" i_stop="89471" i_length="1603"/>
          </intron>
          <exon e_serial="6" e_score="0.500">
            <gDNA_exon_boundary e_start="89470" e_stop="89433" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94889" stop="94442"/>
              <exon start="93766" stop="93669"/>
              <exon start="93583" stop="93518"/>
              <exon start="93407" stop="93296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94889" stop="94442"/>
              <exon start="93766" stop="93672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94883" stop="94442"/>
              <exon start="93766" stop="93669"/>
              <exon start="93583" stop="93518"/>
              <exon start="93407" stop="93400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94849" stop="94442"/>
              <exon start="93766" stop="93669"/>
              <exon start="93583" stop="93541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94830" stop="94442"/>
              <exon start="93766" stop="93669"/>
              <exon start="93583" stop="93554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94823" stop="94442"/>
              <exon start="93766" stop="93669"/>
              <exon start="93583" stop="93518"/>
              <exon start="93407" stop="93299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94499" stop="94442"/>
              <exon start="93766" stop="93669"/>
              <exon start="93583" stop="93518"/>
              <exon start="93407" stop="93163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93306" stop="92731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93155" stop="92587"/>
              <exon start="91372" stop="91074"/>
              <exon start="89470" stop="89433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAGAGTTTACTTCCTCATTTCATTCTCTCCTCCGTCGGCAACCACACATATCCACCAGCGATGGCGCTGTATACTTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAG : TGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG : GTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAG : GTGACAAGTATAATAACGGAGAAATCATTGAGAGACCACCTCCTCCACAGTTTCAAAGACAAGGTAGCAGGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCGCCCTCCTCAGCAGAACTATGGGCCAGCACAGGGTCATCCACCACAGCAGAATTATGGTGCAGCACAGGGTCCTCCACCACAGCAGAATTATAACGCGCCACAGGGTCCTCCACCCCAGCAGAACTATGGCCCACCAAGGTATCCTCCACCGCAACAGAACTATGGCTCACGACAGTATGCTCCGCCACCTCAACAGAACTACAGACAACCACAGGATCTTTCTCCACAGCAGAATTATGAGCGGCCACAGAATCCTCAGCCAAACCAGAGTTACGGTGTACCTCAGAGTGTTCCTTCTCAGTGGAATCATGGCCTTCAGCCAAAATTTGTACCTCAACAGATCTATGGGCCTCAAGGGGCTGGGGATCATAGGGGTCCTGCACCTCCTGATAGCAACCTAGATGCGTGGGATAATTCCCAGGTTGGATGGGGTGATTCAATACGTTCACCTTTTCCTCGAAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAACCACTGAGATATGGGCCCCAGTTTGGGCAGAACAATCCAAGGCCAGGAGGAAATCAGAATTTCCCACCGATAGAGCAGCAGGGCAACATGCAAGGGGGGGAGCAGAGGACTTATGCATCTAGTGGTACAATGGGAACAGATCAA : GAGAGATACTAAAGATATGGTGCAGTATCATGACGTACTGAGAAAGGATTGTTAATTAGCTTTTGACTAGCTAAAGGTGATGGTTCTTGTCTGAATAATTGAGAAATGATCATGATCACATCCTCTAGTCTCAACAATTACCAAGAAACTTGGGCTGAAGAATGTTGTGGTAAATAGTTTTCCAATGTCTTAATATGGTTATGGAAATGGTGTTTTGTGAATGATAACATGGAGAGACTTAGGTGTAAAACAAGCCTCTTGTATCTGTTTCTTTTTGTGCAAGGAAGAAGGTTTCTAAT : AAGCTAAAAAAAAGGCTAAAAAGGCAAAAGGGGATGTT</gDNA_template>
            <first_frame> H  R  V  Y  F  L  I  S  F  S  P  P  S  A  T  T  H  I  H  Q  R  W  R  C  I  L  P  V  S  G  E  L  S  L  F  L  L  Q  F  L  L  K  L  S  I  N  Q  I  S  F  L  Q  L  H  H  S  P  N  V  R  L  P  K  A  I  C  L  S  L  T  V  S  I  F  R  P  N  G  D  Y  L  G  L  L  Q  Y  R  C  P  R  G  L  D  H  L  T  E  I  Q  L  T  M  K  *  V  P  T  Q  S  S  S  K  D  A  I  M  S  I  G  *  L  *  L  I  F  L  K  I  L  S  L  R  G  K  R  *  L  R  L  M  C  R  L  L  L  R  S  S  G   : V  W  K  R  L  R  K  R  F  M  P  *  A  Q  Q  L  T  E  V  F  R  S  C  V  Q  R  T  H  R  R  S  L  K  :  V  S  Q  E  L  C  L  Y  C  L  I  P  I  L  I  Q  *  T  R  N  M  E  :  V  T  S  I  I  T  E  K  S  L  R  D  H  L  L  H  S  F  K  D  K  V  A  G  L  E  E  A  H  S  I  N  K  A  I  I  A  L  L  S  R  T  M  G  Q  H  R  V  I  H  H  S  R  I  M  V  Q  H  R  V  L  H  H  S  R  I  I  T  R  H  R  V  L  H  P  S  R  T  M  A  H  Q  G  I  L  H  R  N  R  T  M  A  H  D  S  M  L  R  H  L  N  R  T  T  D  N  H  R  I  F  L  H  S  R  I  M  S  G  H  R  I  L  S  Q  T  R  V  T  V  Y  L  R  V  F  L  L  S  G  I  M  A  F  S  Q  N  L  Y  L  N  R  S  M  G  L  K  G  L  G  I  I  G  V  L  H  L  L  I  A  T  *  M  R  G  I  I  P  R  L  D  G  V  I  Q  Y  V  H  L  F  L  E  E  T  R  E  V  V  H  L  Q  S  K  E  A  L  E  E  F  N  I  M  G  L  N  K  V  E  V  L  N  N  K  P  L  E  I  N  H  *  D  M  G  P  S  L  G  R  T  I  Q  G  Q  E  E  I  R  I  S  H  R  *  S  S  R  A  T  C  K  G  G  S  R  G  L  M  H  L  V  V  Q  W  E  Q  I  K :   R  D  T  K  D  M  V  Q  Y  H  D  V  L  R  K  D  C  *  L  A  F  D  *  L  K  V  M  V  L  V  *  I  I  E  K  *  S  *  S  H  P  L  V  S  T  I  T  K  K  L  G  L  K  N  V  V  V  N  S  F  P  M  S  *  Y  G  Y  G  N  G  V  L  *  M  I  T  W  R  D  L  G  V  K  Q  A  S  C  I  C  F  F  L  C  K  E  E  G  F  *   : *  A  K  K  K  A  K  K  A  K  G  D  V </first_frame>
            <second_frame>  T  E  F  T  S  S  F  H  S  L  L  R  R  Q  P  H  I  S  T  S  D  G  A  V  Y  F  P  S  P  A  S  S  P  S  F  F  F  N  F  C  S  N  F  P  S  T  K  S  H  F  S  N  C  I  T  L  P  M  Y  V  Y  P  K  Q  F  V  *  A  *  P  F  R  F  S  V  P  M  E  T  I  *  V  F  Y  N  I  A  V  L  E  V  S  I  I  *  P  K  S  S  *  R  *  N  R  S  R  H  N  P  L  R  R  M  R  L  *  A  L  A  D  C  D  *  F  S  *  R  Y  S  A  Y  E  G  R  D  D  *  D  L  C  A  D  C  C  *  G  L  R  E  :  C  G  R  G  *  E  K  D  L  C  L  K  H  N  N  L  P  R  F  S  G  L  V  F  R  G  H  I  E  E  V  *  R :   S  P  R  S  C  V  C  T  A  *  F  L  Y  *  S  S  K  Q  G  I  W  R :   *  Q  V  *  *  R  R  N  H  *  E  T  T  S  S  T  V  S  K  T  R  *  Q  A  S  K  R  P  T  V  S  T  R  Q  L  S  P  S  S  A  E  L  W  A  S  T  G  S  S  T  T  A  E  L  W  C  S  T  G  S  S  T  T  A  E  L  *  R  A  T  G  S  S  T  P  A  E  L  W  P  T  K  V  S  S  T  A  T  E  L  W  L  T  T  V  C  S  A  T  S  T  E  L  Q  T  T  T  G  S  F  S  T  A  E  L  *  A  A  T  E  S  S  A  K  P  E  L  R  C  T  S  E  C  S  F  S  V  E  S  W  P  S  A  K  I  C  T  S  T  D  L  W  A  S  R  G  W  G  S  *  G  S  C  T  S  *  *  Q  P  R  C  V  G  *  F  P  G  W  M  G  *  F  N  T  F  T  F  S  S  K  R  P  E  R  W  C  T  S  R  A  R  R  L  W  R  S  S  T  L  W  V  S  T  R  W  K  F  *  T  T  N  L  W  R  S  T  T  E  I  W  A  P  V  W  A  E  Q  S  K  A  R  R  K  S  E  F  P  T  D  R  A  A  G  Q  H  A  R  G  G  A  E  D  L  C  I  *  W  Y  N  G  N  R  S   : R  E  I  L  K  I  W  C  S  I  M  T  Y  *  E  R  I  V  N  *  L  L  T  S  *  R  *  W  F  L  S  E  *  L  R  N  D  H  D  H  I  L  *  S  Q  Q  L  P  R  N  L  G  *  R  M  L  W  *  I  V  F  Q  C  L  N  M  V  M  E  M  V  F  C  E  *  *  H  G  E  T  *  V  *  N  K  P  L  V  S  V  S  F  C  A  R  K  K  V  S  N  :  K  L  K  K  R  L  K  R  Q  K  G  M   </second_frame>
            <third_frame>   Q  S  L  L  P  H  F  I  L  S  S  V  G  N  H  T  Y  P  P  A  M  A  L  Y  T  S  R  L  R  R  A  L  P  L  S  S  S  I  F  A  Q  T  F  H  Q  P  N  L  I  S  P  I  A  S  L  S  Q  C  T  S  T  Q  S  N  L  S  K  L  N  R  F  D  F  P  S  Q  W  R  L  F  R  S  S  T  I  S  L  S  S  R  S  R  S  F  D  R  N  P  A  D  D  E  I  G  P  D  T  I  L  F  E  G  C  D  Y  E  H  W  L  I  V  I  D  F  P  K  D  T  Q  L  T  R  E  E  M  I  E  T  Y  V  Q  T  A  A  K  V  F  G  S :   V  E  E  A  K  K  K  I  Y  A  L  S  T  T  T  Y  R  G  F  Q  V  L  C  S  E  D  T  S  K  K  F  E   : G  L  P  G  V  V  F  V  L  P  D  S  Y  I  D  P  V  N  K  E  Y  G   : G  D  K  Y  N  N  G  E  I  I  E  R  P  P  P  P  Q  F  Q  R  Q  G  S  R  P  R  R  G  P  Q  Y  Q  Q  G  N  Y  R  P  P  Q  Q  N  Y  G  P  A  Q  G  H  P  P  Q  Q  N  Y  G  A  A  Q  G  P  P  P  Q  Q  N  Y  N  A  P  Q  G  P  P  P  Q  Q  N  Y  G  P  P  R  Y  P  P  P  Q  Q  N  Y  G  S  R  Q  Y  A  P  P  P  Q  Q  N  Y  R  Q  P  Q  D  L  S  P  Q  Q  N  Y  E  R  P  Q  N  P  Q  P  N  Q  S  Y  G  V  P  Q  S  V  P  S  Q  W  N  H  G  L  Q  P  K  F  V  P  Q  Q  I  Y  G  P  Q  G  A  G  D  H  R  G  P  A  P  P  D  S  N  L  D  A  W  D  N  S  Q  V  G  W  G  D  S  I  R  S  P  F  P  R  R  D  Q  R  G  G  A  P  P  E  Q  G  G  F  G  G  V  Q  H  Y  G  S  Q  Q  G  G  S  S  E  Q  Q  T  F  G  D  Q  P  L  R  Y  G  P  Q  F  G  Q  N  N  P  R  P  G  G  N  Q  N  F  P  P  I  E  Q  Q  G  N  M  Q  G  G  E  Q  R  T  Y  A  S  S  G  T  M  G  T  D  Q  :  E  R  Y  *  R  Y  G  A  V  S  *  R  T  E  K  G  L  L  I  S  F  *  L  A  K  G  D  G  S  C  L  N  N  *  E  M  I  M  I  T  S  S  S  L  N  N  Y  Q  E  T  W  A  E  E  C  C  G  K  *  F  S  N  V  L  I  W  L  W  K  W  C  F  V  N  D  N  M  E  R  L  R  C  K  T  S  L  L  Y  L  F  L  F  V  Q  G  R  R  F  L  I :   S  *  K  K  G  *  K  G  K  R  G  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94887" stop="94442"/>
                    <exon start="93766" stop="93669"/>
                    <exon start="93583" stop="93518"/>
                    <exon start="93407" stop="92587"/>
                    <exon start="91372" stop="91361"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1440</number_coding_nucleotides>
                  <number_encoded_amino_acids>480</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSLLPHFILSSVGNHTYPPAMALYTSRLRRALPLSSSIFAQTFHQPNLISPIASLSQCTSTQSNLSKLNRFDFPSQWRLFRSSTISLSSRSRSFDRNPADDEIGPDTILFEGCDYEHWLIVIDFPKDTQLTREEMIETYVQTAAKVFGSVEEAKKKIYALSTTTYRGFQVLCSEDTSKKFEGLPGVVFVLPDSYIDPVNKEYGGDKYNNGEIIERPPPPQFQRQGSRPRRGPQYQQGNYRPPQQNYGPAQGHPPQQNYGAAQGPPPQQNYNAPQGPPPQQNYGPPRYPPPQQNYGSRQYAPPPQQNYRQPQDLSPQQNYERPQNPQPNQSYGVPQSVPSQWNHGLQPKFVPQQIYGPQGAGDHRGPAPPDSNLDAWDNSQVGWGDSIRSPFPRRDQRGGAPPEQGGFGGVQHYGSQQGGSSEQQTFGDQPLRYGPQFGQNNPRPGGNQNFPPIEQQGNMQGGEQRTYASSGTMGTDQERY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94889" e_stop="94442"/>
            <exon e_start="93766" e_stop="93669"/>
            <exon e_start="93583" e_stop="93518"/>
            <exon e_start="93407" e_stop="92587"/>
            <exon e_start="91372" e_stop="91021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.941"/>
          <exon-intron don_prob="0.859" acc_prob="0.968" e_score="0.990"/>
          <exon-intron don_prob="0.827" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.869"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="94889" e_stop="94442" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94441" i_stop="93767" i_length="675"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="93766" e_stop="93669" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.859" acc_prob="0.968">
            <gDNA_intron_boundary i_start="93668" i_stop="93584" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93583" e_stop="93518" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.827" acc_prob="0.968">
            <gDNA_intron_boundary i_start="93517" i_stop="93408" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93407" e_stop="92587" e_length="821"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="92586" i_stop="91373" i_length="1214"/>
          </intron>
          <exon e_serial="5" e_score="0.869">
            <gDNA_exon_boundary e_start="91372" e_stop="91021" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94889" stop="94442"/>
              <exon start="93766" stop="93669"/>
              <exon start="93583" stop="93518"/>
              <exon start="93407" stop="93296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94889" stop="94442"/>
              <exon start="93766" stop="93672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94883" stop="94442"/>
              <exon start="93766" stop="93669"/>
              <exon start="93583" stop="93518"/>
              <exon start="93407" stop="93400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94849" stop="94442"/>
              <exon start="93766" stop="93669"/>
              <exon start="93583" stop="93541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94830" stop="94442"/>
              <exon start="93766" stop="93669"/>
              <exon start="93583" stop="93554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94823" stop="94442"/>
              <exon start="93766" stop="93669"/>
              <exon start="93583" stop="93518"/>
              <exon start="93407" stop="93299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94499" stop="94442"/>
              <exon start="93766" stop="93669"/>
              <exon start="93583" stop="93518"/>
              <exon start="93407" stop="93163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93306" stop="92731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92839" stop="92587"/>
              <exon start="91372" stop="91021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428890" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAGAGTTTACTTCCTCATTTCATTCTCTCCTCCGTCGGCAACCACACATATCCACCAGCGATGGCGCTGTATACTTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACACAATCCTCTTCGAAGGATGCGATTATGAGCATTGGCTGATTGTGATTGATTTTCCTAAAGATACTCAGCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAG : TGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG : GTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAG : GTGACAAGTATAATAACGGAGAAATCATTGAGAGACCACCTCCTCCACAGTTTCAAAGACAAGGTAGCAGGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCGCCCTCCTCAGCAGAACTATGGGCCAGCACAGGGTCATCCACCACAGCAGAATTATGGTGCAGCACAGGGTCCTCCACCACAGCAGAATTATAACGCGCCACAGGGTCCTCCACCCCAGCAGAACTATGGCCCACCAAGGTATCCTCCACCGCAACAGAACTATGGCTCACGACAGTATGCTCCGCCACCTCAACAGAACTACAGACAACCACAGGATCTTTCTCCACAGCAGAATTATGAGCGGCCACAGAATCCTCAGCCAAACCAGAGTTACGGTGTACCTCAGAGTGTTCCTTCTCAGTGGAATCATGGCCTTCAGCCAAAATTTGTACCTCAACAGATCTATGGGCCTCAAGGGGCTGGGGATCATAGGGGTCCTGCACCTCCTGATAGCAACCTAGATGCGTGGGATAATTCCCAGGTTGGATGGGGTGATTCAATACGTTCACCTTTTCCTCGAAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAACCACTGAGATATGGGCCCCAGTTTGGGCAGAACAATCCAAGGCCAGGAGGAAATCAGAATTTCCCACCGATAGAGCAGCAGGGCAACATGCAAGGGGGGGAGCAGAGGACTTATGCATCTAGTGGTACAATGGGAACAGATCAA : GAGAGATACTAAAGATATGGTGCAGTATCATGACGTACTGAGAAAGGATTGTTAATTAGCTTTTGACTAGCTAAAGGTGATGGTTCTTGTCTGAATAATTGAGAAATGATCATGATCACATCCTCTAGTCTCAACAATTACCAAGAAACTTGGGCTGAAGAATGTTGTGGTAAATAGTTTTCCAATGTCTTAATATGGTTATGGAAATGGTGTTTTGTGAATGATAACATGGAGAGACTTAGGTGTAAAACAAGCCTCTTGTATCTGTTTCTTTTTGTGCAAGGAAGAAGGTTTCTAATGCATTTGCTTAATTATTTGTTGTCTTAGCTAAGTTTGCAGCTGGAATGAAAAG</gDNA_template>
            <first_frame> H  R  V  Y  F  L  I  S  F  S  P  P  S  A  T  T  H  I  H  Q  R  W  R  C  I  L  P  V  S  G  E  L  S  L  F  L  L  Q  F  L  L  K  L  S  I  N  Q  I  S  F  L  Q  L  H  H  S  P  N  V  R  L  P  K  A  I  C  L  S  L  T  V  S  I  F  R  P  N  G  D  Y  L  G  L  L  Q  Y  R  C  P  R  G  L  D  H  L  T  E  I  Q  L  T  M  K  *  V  P  T  Q  S  S  S  K  D  A  I  M  S  I  G  *  L  *  L  I  F  L  K  I  L  S  L  R  G  K  R  *  L  R  L  M  C  R  L  L  L  R  S  S  G   : V  W  K  R  L  R  K  R  F  M  P  *  A  Q  Q  L  T  E  V  F  R  S  C  V  Q  R  T  H  R  R  S  L  K  :  V  S  Q  E  L  C  L  Y  C  L  I  P  I  L  I  Q  *  T  R  N  M  E  :  V  T  S  I  I  T  E  K  S  L  R  D  H  L  L  H  S  F  K  D  K  V  A  G  L  E  E  A  H  S  I  N  K  A  I  I  A  L  L  S  R  T  M  G  Q  H  R  V  I  H  H  S  R  I  M  V  Q  H  R  V  L  H  H  S  R  I  I  T  R  H  R  V  L  H  P  S  R  T  M  A  H  Q  G  I  L  H  R  N  R  T  M  A  H  D  S  M  L  R  H  L  N  R  T  T  D  N  H  R  I  F  L  H  S  R  I  M  S  G  H  R  I  L  S  Q  T  R  V  T  V  Y  L  R  V  F  L  L  S  G  I  M  A  F  S  Q  N  L  Y  L  N  R  S  M  G  L  K  G  L  G  I  I  G  V  L  H  L  L  I  A  T  *  M  R  G  I  I  P  R  L  D  G  V  I  Q  Y  V  H  L  F  L  E  E  T  R  E  V  V  H  L  Q  S  K  E  A  L  E  E  F  N  I  M  G  L  N  K  V  E  V  L  N  N  K  P  L  E  I  N  H  *  D  M  G  P  S  L  G  R  T  I  Q  G  Q  E  E  I  R  I  S  H  R  *  S  S  R  A  T  C  K  G  G  S  R  G  L  M  H  L  V  V  Q  W  E  Q  I  K :   R  D  T  K  D  M  V  Q  Y  H  D  V  L  R  K  D  C  *  L  A  F  D  *  L  K  V  M  V  L  V  *  I  I  E  K  *  S  *  S  H  P  L  V  S  T  I  T  K  K  L  G  L  K  N  V  V  V  N  S  F  P  M  S  *  Y  G  Y  G  N  G  V  L  *  M  I  T  W  R  D  L  G  V  K  Q  A  S  C  I  C  F  F  L  C  K  E  E  G  F  *  C  I  C  L  I  I  C  C  L  S  *  V  C  S  W  N  E  K </first_frame>
            <second_frame>  T  E  F  T  S  S  F  H  S  L  L  R  R  Q  P  H  I  S  T  S  D  G  A  V  Y  F  P  S  P  A  S  S  P  S  F  F  F  N  F  C  S  N  F  P  S  T  K  S  H  F  S  N  C  I  T  L  P  M  Y  V  Y  P  K  Q  F  V  *  A  *  P  F  R  F  S  V  P  M  E  T  I  *  V  F  Y  N  I  A  V  L  E  V  S  I  I  *  P  K  S  S  *  R  *  N  R  S  R  H  N  P  L  R  R  M  R  L  *  A  L  A  D  C  D  *  F  S  *  R  Y  S  A  Y  E  G  R  D  D  *  D  L  C  A  D  C  C  *  G  L  R  E  :  C  G  R  G  *  E  K  D  L  C  L  K  H  N  N  L  P  R  F  S  G  L  V  F  R  G  H  I  E  E  V  *  R :   S  P  R  S  C  V  C  T  A  *  F  L  Y  *  S  S  K  Q  G  I  W  R :   *  Q  V  *  *  R  R  N  H  *  E  T  T  S  S  T  V  S  K  T  R  *  Q  A  S  K  R  P  T  V  S  T  R  Q  L  S  P  S  S  A  E  L  W  A  S  T  G  S  S  T  T  A  E  L  W  C  S  T  G  S  S  T  T  A  E  L  *  R  A  T  G  S  S  T  P  A  E  L  W  P  T  K  V  S  S  T  A  T  E  L  W  L  T  T  V  C  S  A  T  S  T  E  L  Q  T  T  T  G  S  F  S  T  A  E  L  *  A  A  T  E  S  S  A  K  P  E  L  R  C  T  S  E  C  S  F  S  V  E  S  W  P  S  A  K  I  C  T  S  T  D  L  W  A  S  R  G  W  G  S  *  G  S  C  T  S  *  *  Q  P  R  C  V  G  *  F  P  G  W  M  G  *  F  N  T  F  T  F  S  S  K  R  P  E  R  W  C  T  S  R  A  R  R  L  W  R  S  S  T  L  W  V  S  T  R  W  K  F  *  T  T  N  L  W  R  S  T  T  E  I  W  A  P  V  W  A  E  Q  S  K  A  R  R  K  S  E  F  P  T  D  R  A  A  G  Q  H  A  R  G  G  A  E  D  L  C  I  *  W  Y  N  G  N  R  S   : R  E  I  L  K  I  W  C  S  I  M  T  Y  *  E  R  I  V  N  *  L  L  T  S  *  R  *  W  F  L  S  E  *  L  R  N  D  H  D  H  I  L  *  S  Q  Q  L  P  R  N  L  G  *  R  M  L  W  *  I  V  F  Q  C  L  N  M  V  M  E  M  V  F  C  E  *  *  H  G  E  T  *  V  *  N  K  P  L  V  S  V  S  F  C  A  R  K  K  V  S  N  A  F  A  *  L  F  V  V  L  A  K  F  A  A  G  M  K   </second_frame>
            <third_frame>   Q  S  L  L  P  H  F  I  L  S  S  V  G  N  H  T  Y  P  P  A  M  A  L  Y  T  S  R  L  R  R  A  L  P  L  S  S  S  I  F  A  Q  T  F  H  Q  P  N  L  I  S  P  I  A  S  L  S  Q  C  T  S  T  Q  S  N  L  S  K  L  N  R  F  D  F  P  S  Q  W  R  L  F  R  S  S  T  I  S  L  S  S  R  S  R  S  F  D  R  N  P  A  D  D  E  I  G  P  D  T  I  L  F  E  G  C  D  Y  E  H  W  L  I  V  I  D  F  P  K  D  T  Q  L  T  R  E  E  M  I  E  T  Y  V  Q  T  A  A  K  V  F  G  S :   V  E  E  A  K  K  K  I  Y  A  L  S  T  T  T  Y  R  G  F  Q  V  L  C  S  E  D  T  S  K  K  F  E   : G  L  P  G  V  V  F  V  L  P  D  S  Y  I  D  P  V  N  K  E  Y  G   : G  D  K  Y  N  N  G  E  I  I  E  R  P  P  P  P  Q  F  Q  R  Q  G  S  R  P  R  R  G  P  Q  Y  Q  Q  G  N  Y  R  P  P  Q  Q  N  Y  G  P  A  Q  G  H  P  P  Q  Q  N  Y  G  A  A  Q  G  P  P  P  Q  Q  N  Y  N  A  P  Q  G  P  P  P  Q  Q  N  Y  G  P  P  R  Y  P  P  P  Q  Q  N  Y  G  S  R  Q  Y  A  P  P  P  Q  Q  N  Y  R  Q  P  Q  D  L  S  P  Q  Q  N  Y  E  R  P  Q  N  P  Q  P  N  Q  S  Y  G  V  P  Q  S  V  P  S  Q  W  N  H  G  L  Q  P  K  F  V  P  Q  Q  I  Y  G  P  Q  G  A  G  D  H  R  G  P  A  P  P  D  S  N  L  D  A  W  D  N  S  Q  V  G  W  G  D  S  I  R  S  P  F  P  R  R  D  Q  R  G  G  A  P  P  E  Q  G  G  F  G  G  V  Q  H  Y  G  S  Q  Q  G  G  S  S  E  Q  Q  T  F  G  D  Q  P  L  R  Y  G  P  Q  F  G  Q  N  N  P  R  P  G  G  N  Q  N  F  P  P  I  E  Q  Q  G  N  M  Q  G  G  E  Q  R  T  Y  A  S  S  G  T  M  G  T  D  Q  :  E  R  Y  *  R  Y  G  A  V  S  *  R  T  E  K  G  L  L  I  S  F  *  L  A  K  G  D  G  S  C  L  N  N  *  E  M  I  M  I  T  S  S  S  L  N  N  Y  Q  E  T  W  A  E  E  C  C  G  K  *  F  S  N  V  L  I  W  L  W  K  W  C  F  V  N  D  N  M  E  R  L  R  C  K  T  S  L  L  Y  L  F  L  F  V  Q  G  R  R  F  L  M  H  L  L  N  Y  L  L  S  *  L  S  L  Q  L  E  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94887" stop="94442"/>
                    <exon start="93766" stop="93669"/>
                    <exon start="93583" stop="93518"/>
                    <exon start="93407" stop="92587"/>
                    <exon start="91372" stop="91361"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1440</number_coding_nucleotides>
                  <number_encoded_amino_acids>480</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSLLPHFILSSVGNHTYPPAMALYTSRLRRALPLSSSIFAQTFHQPNLISPIASLSQCTSTQSNLSKLNRFDFPSQWRLFRSSTISLSSRSRSFDRNPADDEIGPDTILFEGCDYEHWLIVIDFPKDTQLTREEMIETYVQTAAKVFGSVEEAKKKIYALSTTTYRGFQVLCSEDTSKKFEGLPGVVFVLPDSYIDPVNKEYGGDKYNNGEIIERPPPPQFQRQGSRPRRGPQYQQGNYRPPQQNYGPAQGHPPQQNYGAAQGPPPQQNYNAPQGPPPQQNYGPPRYPPPQQNYGSRQYAPPPQQNYRQPQDLSPQQNYERPQNPQPNQSYGVPQSVPSQWNHGLQPKFVPQQIYGPQGAGDHRGPAPPDSNLDAWDNSQVGWGDSIRSPFPRRDQRGGAPPEQGGFGGVQHYGSQQGGSSEQQTFGDQPLRYGPQFGQNNPRPGGNQNFPPIEQQGNMQGGEQRTYASSGTMGTDQERY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="103742" PGL_stop="106742"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105514" e_stop="105900"/>
            <exon e_start="105991" e_stop="106742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105514" e_stop="105900" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105901" i_stop="105990" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105991" e_stop="106742" e_length="752"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105514" stop="105900"/>
              <exon start="105991" stop="106742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106037" stop="106729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106037" stop="106418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106037" stop="106193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106038" stop="106499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106144" stop="106729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394166" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCACGACGAAGCCAAAGCTCGATTGAAGAGAATTAGGGGAATTGAAGATGTAGATGAAGAGTTCAATGATTTGGTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAA : ATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCTTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTATGTTCATAAGCTGT</gDNA_template>
            <first_frame> N  H  D  E  A  K  A  R  L  K  R  I  R  G  I  E  D  V  D  E  E  F  N  D  L  V  I  A  S  E  A  S  R  K  I  E  H  P  W  R  N  L  L  Q  K  K  Y  R  P  H  L  T  M  A  I  M  I  P  F  F  Q  Q  L  T  G  I  N  V  I  M  F  Y  A  P  V  L  F  K  T  I  G  F  G  T  D  A  S  L  M  S  A  V  I  T  G  G  I  N  V  I  A  T  I  V  S  I  Y  Y  V  D  K  L  G  R  R  F  L  F  L  E  G  G  I  Q  M  L  F  S  Q  :  I  A  V  A  I  L  I  A  I  K  F  G  V  N  G  T  P  G  E  L  P  K  W  Y  A  I  V  V  V  I  F  I  C  V  Y  V  A  G  F  A  W  S  W  G  P  L  G  W  L  V  P  S  E  I  F  P  L  E  I  R  S  A  A  Q  S  I  N  V  S  V  N  M  I  F  T  F  A  V  A  Q  V  F  L  T  M  L  C  H  L  K  F  G  L  F  L  F  F  A  F  F  V  V  I  M  T  V  F  I  Y  F  F  L  P  E  T  K  N  I  P  I  E  E  M  V  I  V  W  K  E  H  W  F  W  S  K  F  M  T  E  V  D  Y  P  G  T  R  N  G  T  A  V  E  M  A  K  G  G  A  G  Y  K  I  V  *  L  *  F  G  F  L  N  F  Y  L  L  F  V  *  C  C  S  G  D  D  I  D  N  Y  *  L  D  L  I  E  T  V  S  I  V  Y  F  C  I  E  K  N  T  *  L  C  S  I  E  N  L  A  K  Q  L  C  S  L  L  F  V  L  L  D  V  L  F  S  S  S  S  L  L  V  *  D  L  Y  Y  K  K  L  C  S  *  A   </first_frame>
            <second_frame>  T  T  T  K  P  K  L  D  *  R  E  L  G  E  L  K  M  *  M  K  S  S  M  I  W  L  L  L  V  K  L  L  G  K  L  N  I  P  G  G  T  C  C  K  R  N  I  D  H  I  L  Q  W  Q  L  *  S  H  F  S  N  N  L  L  E  S  T  *  L  C  F  M  H  L  C  C  L  K  P  L  V  L  V  L  M  L  H  L  C  L  L  *  S  L  V  E  S  M  S  L  P  L  L  F  L  F  T  M  L  I  N  *  E  E  D  S  C  F  L  K  V  E  F  K  C  S  F  P  K :   *  P  W  Q  F  *  *  Q  *  S  L  E  *  M  E  L  Q  G  N  Y  Q  N  G  M  Q  *  W  L  *  Y  S  F  V  Y  M  L  L  D  S  L  G  H  G  V  L  L  D  G  S  Y  L  V  K  F  S  H  W  K  F  D  Q  L  H  K  V  S  M  S  Q  *  T  *  S  S  H  L  Q  *  H  K  F  S  *  Q  C  C  V  I  *  S  L  D  C  F  C  F  S  P  S  L  W  *  L  *  L  C  S  Y  T  S  S  C  L  R  R  K  I  F  R  *  K  R  W  *  L  C  G  K  N  I  G  S  G  L  S  S  *  L  K  L  I  I  L  E  L  G  M  E  L  L  L  K  W  L  K  G  V  L  V  T  K  L  Y  D  F  S  L  G  F  *  I  F  I  C  C  L  Y  N  V  V  V  G  M  I  L  I  I  I  N  *  I  *  L  K  L  F  L  L  F  T  F  A  *  K  K  I  H  N  F  V  Q  *  K  I  W  Q  S  N  C  V  A  F  C  L  F  C  W  M  Y  Y  L  V  V  L  V  F  *  C  K  I  F  I  I  K  N  Y  V  H  K  L  </second_frame>
            <third_frame>   P  R  R  S  Q  S  S  I  E  E  N  *  G  N  *  R  C  R  *  R  V  Q  *  F  G  Y  C  *  *  S  F  *  E  N  *  T  S  L  E  E  L  V  A  K  E  I  *  T  T  S  Y  N  G  N  Y  D  P  I  F  P  T  T  Y  W  N  Q  R  D  Y  V  L  C  T  C  V  V  *  N  H  W  F  W  Y  *  C  F  T  Y  V  C  C  D  H  W  W  N  Q  C  H  C  H  Y  C  F  Y  L  L  C  *  *  I  R  K  K  I  L  V  S  *  R  W  N  S  N  A  L  F  P   : N  S  R  G  N  F  D  S  N  K  V  W  S  K  W  N  S  R  G  I  T  K  M  V  C  N  S  G  C  D  I  H  L  C  I  C  C  W  I  R  L  V  M  G  S  S  W  M  A  R  T  *  *  N  F  P  T  G  N  S  I  S  C  T  K  Y  Q  C  L  S  E  H  D  L  H  I  C  S  S  T  S  F  L  N  N  V  V  S  F  E  V  W  I  V  S  V  F  R  L  L  C  G  D  Y  D  C  V  H  I  L  L  L  A  *  D  E  K  Y  S  D  R  R  D  G  D  C  V  E  R  T  L  V  L  V  *  V  H  D  *  S  *  L  S  W  N  *  E  W  N  C  C  *  N  G  *  R  G  C  W  L  Q  N  C  M  T  L  V  W  V  F  K  F  L  F  V  V  C  I  M  L  *  W  G  *  Y  *  *  L  L  I  R  F  D  *  N  C  F  Y  C  L  L  L  H  R  K  K  Y  I  T  L  F  N  R  K  F  G  K  A  T  V  *  P  F  V  C  F  V  G  C  T  I  *  *  F  *  S  F  S  V  R  S  L  L  *  K  I  M  F  I  S  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105514" stop="105900"/>
                    <exon start="105991" stop="106482"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHDEAKARLKRIRGIEDVDEEFNDLVIASEASRKIEHPWRNLLQKKYRPHLTMAIMIPFFQQLTGINVIMFYAPVLFKTIGFGTDASLMSAVITGGINVIATIVSIYYVDKLGRRFLFLEGGIQMLFSQIAVAILIAIKFGVNGTPGELPKWYAIVVVIFICVYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSINVSVNMIFTFAVAQVFLTMLCHLKFGLFLFFAFFVVIMTVFIYFFLPETKNIPIEEMVIVWKEHWFWSKFMTEVDYPGTRNGTAVEMAKGGAGYKIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103742" e_stop="103811"/>
            <exon e_start="105589" e_stop="105900"/>
            <exon e_start="105991" e_stop="106729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.693" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103742" e_stop="103811" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.693" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103812" i_stop="105588" i_length="1777"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105589" e_stop="105900" e_length="312"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105901" i_stop="105990" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="105991" e_stop="106729" e_length="739"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103742" stop="103811"/>
              <exon start="105589" stop="105900"/>
              <exon start="105991" stop="106131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106037" stop="106729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106037" stop="106418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106037" stop="106193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106038" stop="106499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106144" stop="106729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394166" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGCTTTGATTAATGGATTTGCTCAGAATGTTGCTATGCTCATTATTGGTCGTATTTTTCTTGGTTTTG : GTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAA : ATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCTTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTAT</gDNA_template>
            <first_frame> G  A  L  I  N  G  F  A  Q  N  V  A  M  L  I  I  G  R  I  F  L  G  F   : G  Y  C  *  *  S  F  *  E  N  *  T  S  L  E  E  L  V  A  K  E  I  *  T  T  S  Y  N  G  N  Y  D  P  I  F  P  T  T  Y  W  N  Q  R  D  Y  V  L  C  T  C  V  V  *  N  H  W  F  W  Y  *  C  F  T  Y  V  C  C  D  H  W  W  N  Q  C  H  C  H  Y  C  F  Y  L  L  C  *  *  I  R  K  K  I  L  V  S  *  R  W  N  S  N  A  L  F  P   : N  S  R  G  N  F  D  S  N  K  V  W  S  K  W  N  S  R  G  I  T  K  M  V  C  N  S  G  C  D  I  H  L  C  I  C  C  W  I  R  L  V  M  G  S  S  W  M  A  R  T  *  *  N  F  P  T  G  N  S  I  S  C  T  K  Y  Q  C  L  S  E  H  D  L  H  I  C  S  S  T  S  F  L  N  N  V  V  S  F  E  V  W  I  V  S  V  F  R  L  L  C  G  D  Y  D  C  V  H  I  L  L  L  A  *  D  E  K  Y  S  D  R  R  D  G  D  C  V  E  R  T  L  V  L  V  *  V  H  D  *  S  *  L  S  W  N  *  E  W  N  C  C  *  N  G  *  R  G  C  W  L  Q  N  C  M  T  L  V  W  V  F  K  F  L  F  V  V  C  I  M  L  *  W  G  *  Y  *  *  L  L  I  R  F  D  *  N  C  F  Y  C  L  L  L  H  R  K  K  Y  I  T  L  F  N  R  K  F  G  K  A  T  V  *  P  F  V  C  F  V  G  C  T  I  *  *  F  *  S  F  S  V  R  S  L  L  *  K  I   </first_frame>
            <second_frame>  E  L  *  L  M  D  L  L  R  M  L  L  C  S  L  L  V  V  F  F  L  V  L  :  V  I  A  S  E  A  S  R  K  I  E  H  P  W  R  N  L  L  Q  K  K  Y  R  P  H  L  T  M  A  I  M  I  P  F  F  Q  Q  L  T  G  I  N  V  I  M  F  Y  A  P  V  L  F  K  T  I  G  F  G  T  D  A  S  L  M  S  A  V  I  T  G  G  I  N  V  I  A  T  I  V  S  I  Y  Y  V  D  K  L  G  R  R  F  L  F  L  E  G  G  I  Q  M  L  F  S  Q  :  I  A  V  A  I  L  I  A  I  K  F  G  V  N  G  T  P  G  E  L  P  K  W  Y  A  I  V  V  V  I  F  I  C  V  Y  V  A  G  F  A  W  S  W  G  P  L  G  W  L  V  P  S  E  I  F  P  L  E  I  R  S  A  A  Q  S  I  N  V  S  V  N  M  I  F  T  F  A  V  A  Q  V  F  L  T  M  L  C  H  L  K  F  G  L  F  L  F  F  A  F  F  V  V  I  M  T  V  F  I  Y  F  F  L  P  E  T  K  N  I  P  I  E  E  M  V  I  V  W  K  E  H  W  F  W  S  K  F  M  T  E  V  D  Y  P  G  T  R  N  G  T  A  V  E  M  A  K  G  G  A  G  Y  K  I  V  *  L  *  F  G  F  L  N  F  Y  L  L  F  V  *  C  C  S  G  D  D  I  D  N  Y  *  L  D  L  I  E  T  V  S  I  V  Y  F  C  I  E  K  N  T  *  L  C  S  I  E  N  L  A  K  Q  L  C  S  L  L  F  V  L  L  D  V  L  F  S  S  S  S  L  L  V  *  D  L  Y  Y  K  K  L  </second_frame>
            <third_frame>   S  F  D  *  W  I  C  S  E  C  C  Y  A  H  Y  W  S  Y  F  S  W  F  W :   L  L  L  V  K  L  L  G  K  L  N  I  P  G  G  T  C  C  K  R  N  I  D  H  I  L  Q  W  Q  L  *  S  H  F  S  N  N  L  L  E  S  T  *  L  C  F  M  H  L  C  C  L  K  P  L  V  L  V  L  M  L  H  L  C  L  L  *  S  L  V  E  S  M  S  L  P  L  L  F  L  F  T  M  L  I  N  *  E  E  D  S  C  F  L  K  V  E  F  K  C  S  F  P  K :   *  P  W  Q  F  *  *  Q  *  S  L  E  *  M  E  L  Q  G  N  Y  Q  N  G  M  Q  *  W  L  *  Y  S  F  V  Y  M  L  L  D  S  L  G  H  G  V  L  L  D  G  S  Y  L  V  K  F  S  H  W  K  F  D  Q  L  H  K  V  S  M  S  Q  *  T  *  S  S  H  L  Q  *  H  K  F  S  *  Q  C  C  V  I  *  S  L  D  C  F  C  F  S  P  S  L  W  *  L  *  L  C  S  Y  T  S  S  C  L  R  R  K  I  F  R  *  K  R  W  *  L  C  G  K  N  I  G  S  G  L  S  S  *  L  K  L  I  I  L  E  L  G  M  E  L  L  L  K  W  L  K  G  V  L  V  T  K  L  Y  D  F  S  L  G  F  *  I  F  I  C  C  L  Y  N  V  V  V  G  M  I  L  I  I  I  N  *  I  *  L  K  L  F  L  L  F  T  F  A  *  K  K  I  H  N  F  V  Q  *  K  I  W  Q  S  N  C  V  A  F  C  L  F  C  W  M  Y  Y  L  V  V  L  V  F  *  C  K  I  F  I  I  K  N  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103752" stop="103811"/>
                    <exon start="105589" stop="105900"/>
                    <exon start="105991" stop="106482"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMDLLRMLLCSLLVVFFLVLVIASEASRKIEHPWRNLLQKKYRPHLTMAIMIPFFQQLTGINVIMFYAPVLFKTIGFGTDASLMSAVITGGINVIATIVSIYYVDKLGRRFLFLEGGIQMLFSQIAVAILIAIKFGVNGTPGELPKWYAIVVVIFICVYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSINVSVNMIFTFAVAQVFLTMLCHLKFGLFLFFAFFVVIMTVFIYFFLPETKNIPIEEMVIVWKEHWFWSKFMTEVDYPGTRNGTAVEMAKGGAGYKIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="117828" PGL_stop="113548"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117828" e_stop="117428"/>
            <exon e_start="115424" e_stop="115354"/>
            <exon e_start="115186" e_stop="115105"/>
            <exon e_start="114965" e_stop="114847"/>
            <exon e_start="114420" e_stop="114343"/>
            <exon e_start="114204" e_stop="114085"/>
            <exon e_start="113986" e_stop="113716"/>
            <exon e_start="113569" e_stop="113555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.923" e_score="0.998"/>
          <exon-intron don_prob="0.948" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.763" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.219" e_score="0.993"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="117828" e_stop="117428" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.923">
            <gDNA_intron_boundary i_start="117427" i_stop="115425" i_length="2003"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115424" e_stop="115354" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.946">
            <gDNA_intron_boundary i_start="115353" i_stop="115187" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115186" e_stop="115105" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="115104" i_stop="114966" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114965" e_stop="114847" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.854">
            <gDNA_intron_boundary i_start="114846" i_stop="114421" i_length="426"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114420" e_stop="114343" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.763" acc_prob="0.935">
            <gDNA_intron_boundary i_start="114342" i_stop="114205" i_length="138"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114204" e_stop="114085" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.945" acc_prob="0.924">
            <gDNA_intron_boundary i_start="114084" i_stop="113987" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="113986" e_stop="113716" e_length="271"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.219">
            <gDNA_intron_boundary i_start="113715" i_stop="113570" i_length="146"/>
          </intron>
          <exon e_serial="8" e_score="0.733">
            <gDNA_exon_boundary e_start="113569" e_stop="113555" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117828" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114847"/>
              <exon start="114420" stop="114343"/>
              <exon start="114204" stop="114195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117827" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117823" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114847"/>
              <exon start="114420" stop="114343"/>
              <exon start="114204" stop="114152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117821" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117816" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117796" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114847"/>
              <exon start="114420" stop="114343"/>
              <exon start="114204" stop="114187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117796" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117525" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114847"/>
              <exon start="114420" stop="114343"/>
              <exon start="114204" stop="114085"/>
              <exon start="113986" stop="113716"/>
              <exon start="113569" stop="113555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117481" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114847"/>
              <exon start="114420" stop="114343"/>
              <exon start="114204" stop="114085"/>
              <exon start="113986" stop="113734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCATTTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT : ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG : TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG : TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG : TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA : ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG : AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTGA : AAGCAAAACAAGAAA</gDNA_template>
            <first_frame> C  I  S  K  I  Q  L  P  A  I  P  K  S  V  V  N  K  L  S  I  K  E  T  A  R  R  R  S  E  I  S  E  L  P  V  K  V  P  *  F  P  V  S  D  G  D  R  R  R  E  G  R  *  S  L  G  T  V  *  A  P  F  S  K  R  T  V  N  D  D  F  A  F  V  F  A  *  Y  S  S  L  P  Q  S  T  T  S  I  S  R  K  Y  F  S  G  *  W  I  G  S  S  *  Q  Q  F  Q  L  R  F  F  S  S  Q  V  F  A  S  C  T  P  S  V  E  T  *  S  F  Q  *  A  L  F  S  L :   *  T  W  *  A  S  S  K  C  Y  Q  D  K  K  L  Q  Q  V  S  R  S  F  Q   : V  P  N  N  C  T  Q  K  L  F  H  A  S  S  R  S  N  S  R  P  R  *  E  H  H  C  N  R :   I  Q  V  C  R  A  S  R  K  *  *  K  T  N  G  P  E  E  Q  S  E  V  Q  D  H  E  P  Q  G  E  R  T  D  G  L  C  T  *  A   : V  *  R  A  K  G  S  S  S  R  R  A  N  S  A  G  Y  L  S  R  C  G  T  S  *  S   : N  F  G  K  I  E  A  P  A  G  G  G  R  R  C  S  *  G  T  Q  E  A  C  G  R  Y  R  S  K  D  Y  W  *  R  A  C  H  R  *  M   : E  G  K  K  R  E  V  P  S  S  A  A  S  *  R  R  C  G  I  C  I  T  C  R  Y  C  F  D  I  L  A  L  A  G  K  D  T  S  L  I  V  V  C  N  W  L  F  Y  Y  V  T  K  H  I  S  E  H  S  Q  E  R  I  S  M  S  Q  S  Q  L  L  G  I  T  S  K  L  Y  I  M  S  F  L  L  S  N  E  R  F  S  V  E :   S  K  T  R   </first_frame>
            <second_frame>  A  F  P  K  F  N  S  L  L  F  Q  K  V  L  S  T  S  C  Q  *  R  R  L  H  D  V  V  L  K  S  P  N  Y  R  *  K  F  L  S  F  R  Y  L  M  A  I  A  D  E  K  D  G  K  V  W  G  L  F  K  L  P  F  R  N  A  Q  S  T  T  T  S  R  S  S  S  H  N  T  L  H  Y  R  S  Q  Q  H  Q  S  L  G  N  T  S  L  D  D  G  S  V  P  R  S  N  S  S  S  S  V  S  S  V  A  R  S  L  L  P  A  R  R  R  L  K  L  D  P  S  N  K  L  Y  F  P   : Y  E  P  G  K  Q  V  R  S  A  I  K  I  K  N  S  S  K  S  H  V  A  F  K  :  F  Q  T  T  A  P  K  S  C  F  M  R  P  P  G  A  I  L  A  P  G  E  S  I  I  A  T   : V  F  K  F  V  E  H  P  E  N  N  E  K  P  M  D  Q  K  S  R  V  K  F  K  I  M  S  L  K  V  K  G  P  M  D  Y  V  P  E  L  :  F  E  E  Q  K  D  Q  V  A  V  E  Q  I  L  R  V  I  F  L  D  V  E  R  P  S  P  :  T  L  E  K  L  K  R  Q  L  A  E  A  D  A  A  L  E  E  R  K  K  P  V  E  D  T  G  P  K  I  I  G  E  G  L  V  I  D  E  W  :  K  E  R  R  E  R  Y  L  A  R  Q  Q  V  E  G  G  V  E  S  V  *  L  A  G  I  V  S  T  S  *  L  W  L  E  K  I  P  A  L  L  L  C  V  I  G  C  S  I  M  S  L  N  T  L  V  N  I  H  K  R  E  F  Q  C  P  N  H  S  Y  L  V  *  P  Q  S  C  I  *  C  H  S  F  *  V  M  R  D  F  Q  L   : K  A  K  Q  E  </second_frame>
            <third_frame>   H  F  Q  N  S  T  P  C  Y  S  K  K  C  C  Q  Q  A  V  N  K  G  D  C  T  T  S  F  *  N  L  R  I  T  G  E  S  S  L  V  S  G  I  *  W  R  S  P  T  R  R  T  V  K  F  G  D  C  L  S  S  L  F  E  T  H  S  Q  R  R  L  R  V  R  L  R  I  I  L  F  I  T  A  V  N  N  I  N  L  S  E  I  L  L  W  M  M  D  R  F  L  V  A  T  V  P  A  P  F  L  Q  *  P  G  L  C  F  L  H  A  V  G  *  N  L  I  L  P  I  S  F  I  F  L  :  M  N  L  V  S  K  F  E  V  L  S  R  *  K  T  P  A  S  L  T  *  L  S  S :   S  K  Q  L  H  P  K  A  V  S  C  V  L  P  E  Q  F  S  P  P  V  R  A  S  L  Q  P  :  Y  S  S  L  *  S  I  Q  K  I  M  K  N  Q  W  T  R  R  A  E  *  S  S  R  S  *  A  S  R  *  K  D  R  W  T  M  Y  L  S  C :   L  K  S  K  R  I  K  *  P  *  S  K  F  C  G  L  S  F  S  M  W  N  V  L  V  Q :   L  W  K  N  *  S  A  S  W  R  R  Q  T  L  L  L  R  N  A  R  S  L  W  K  I  Q  V  Q  R  L  L  V  K  G  L  S  *  M  N  G :   R  K  E  E  R  G  T  *  L  G  S  K  L  K  A  V  W  N  L  Y  N  L  Q  V  L  F  R  H  L  S  F  G  W  K  R  Y  Q  P  Y  C  C  V  *  L  V  V  L  L  C  H  *  T  H  *  *  T  F  T  R  E  N  F  N  V  P  I  T  V  T  W  Y  N  L  K  A  V  Y  N  V  I  P  F  K  *  *  E  I  F  S  *  :  K  Q  N  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117722" stop="117428"/>
                    <exon start="115424" stop="115354"/>
                    <exon start="115186" stop="115105"/>
                    <exon start="114965" stop="114847"/>
                    <exon start="114420" stop="114343"/>
                    <exon start="114204" stop="114085"/>
                    <exon start="113986" stop="113924"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLSFRYLMAIADEKDGKVWGLFKLPFRNAQSTTTSRSSSHNTLHYRSQQHQSLGNTSLDDGSVPRSNSSSSVSSVARSLLPARRRLKLDPSNKLYFPYEPGKQVRSAIKIKNSSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEHPENNEKPMDQKSRVKFKIMSLKVKGPMDYVPELFEEQKDQVAVEQILRVIFLDVERPSPTLEKLKRQLAEADAALEERKKPVEDTGPKIIGEGLVIDEWKERRERYLARQQVEGGVESV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113945" stop="113716"/>
                    <exon start="113569" stop="113557"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRCGICITCRYCFDILALAGKDTSLIVVCNWLFYYVTKHISEHSQERISMSQSQLLGITSKLYIMSFLLSNERFSVESKTR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="117828" e_stop="117428"/>
            <exon e_start="115424" e_stop="115354"/>
            <exon e_start="115186" e_stop="115105"/>
            <exon e_start="114965" e_stop="114847"/>
            <exon e_start="114420" e_stop="114343"/>
            <exon e_start="114204" e_stop="114085"/>
            <exon e_start="113986" e_stop="113715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.923" e_score="0.998"/>
          <exon-intron don_prob="0.948" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.763" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.924" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="117828" e_stop="117428" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.923">
            <gDNA_intron_boundary i_start="117427" i_stop="115425" i_length="2003"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115424" e_stop="115354" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.946">
            <gDNA_intron_boundary i_start="115353" i_stop="115187" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115186" e_stop="115105" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="115104" i_stop="114966" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114965" e_stop="114847" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.854">
            <gDNA_intron_boundary i_start="114846" i_stop="114421" i_length="426"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114420" e_stop="114343" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.763" acc_prob="0.935">
            <gDNA_intron_boundary i_start="114342" i_stop="114205" i_length="138"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114204" e_stop="114085" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.945" acc_prob="0.924">
            <gDNA_intron_boundary i_start="114084" i_stop="113987" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="113986" e_stop="113715" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117828" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114847"/>
              <exon start="114420" stop="114343"/>
              <exon start="114204" stop="114195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117827" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117823" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114847"/>
              <exon start="114420" stop="114343"/>
              <exon start="114204" stop="114152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117821" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117816" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117796" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114847"/>
              <exon start="114420" stop="114343"/>
              <exon start="114204" stop="114187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117796" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117481" stop="117428"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114847"/>
              <exon start="114420" stop="114343"/>
              <exon start="114204" stop="114085"/>
              <exon start="113986" stop="113734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114375" stop="114343"/>
              <exon start="114204" stop="114085"/>
              <exon start="113986" stop="113715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225826" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCATTTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT : ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG : TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG : TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG : TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA : ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG : AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTGAA</gDNA_template>
            <first_frame> C  I  S  K  I  Q  L  P  A  I  P  K  S  V  V  N  K  L  S  I  K  E  T  A  R  R  R  S  E  I  S  E  L  P  V  K  V  P  *  F  P  V  S  D  G  D  R  R  R  E  G  R  *  S  L  G  T  V  *  A  P  F  S  K  R  T  V  N  D  D  F  A  F  V  F  A  *  Y  S  S  L  P  Q  S  T  T  S  I  S  R  K  Y  F  S  G  *  W  I  G  S  S  *  Q  Q  F  Q  L  R  F  F  S  S  Q  V  F  A  S  C  T  P  S  V  E  T  *  S  F  Q  *  A  L  F  S  L :   *  T  W  *  A  S  S  K  C  Y  Q  D  K  K  L  Q  Q  V  S  R  S  F  Q   : V  P  N  N  C  T  Q  K  L  F  H  A  S  S  R  S  N  S  R  P  R  *  E  H  H  C  N  R :   I  Q  V  C  R  A  S  R  K  *  *  K  T  N  G  P  E  E  Q  S  E  V  Q  D  H  E  P  Q  G  E  R  T  D  G  L  C  T  *  A   : V  *  R  A  K  G  S  S  S  R  R  A  N  S  A  G  Y  L  S  R  C  G  T  S  *  S   : N  F  G  K  I  E  A  P  A  G  G  G  R  R  C  S  *  G  T  Q  E  A  C  G  R  Y  R  S  K  D  Y  W  *  R  A  C  H  R  *  M   : E  G  K  K  R  E  V  P  S  S  A  A  S  *  R  R  C  G  I  C  I  T  C  R  Y  C  F  D  I  L  A  L  A  G  K  D  T  S  L  I  V  V  C  N  W  L  F  Y  Y  V  T  K  H  I  S  E  H  S  Q  E  R  I  S  M  S  Q  S  Q  L  L  G  I  T  S  K  L  Y  I  M  S  F  L  L  S  N  E  R  F  S  V  E </first_frame>
            <second_frame>  A  F  P  K  F  N  S  L  L  F  Q  K  V  L  S  T  S  C  Q  *  R  R  L  H  D  V  V  L  K  S  P  N  Y  R  *  K  F  L  S  F  R  Y  L  M  A  I  A  D  E  K  D  G  K  V  W  G  L  F  K  L  P  F  R  N  A  Q  S  T  T  T  S  R  S  S  S  H  N  T  L  H  Y  R  S  Q  Q  H  Q  S  L  G  N  T  S  L  D  D  G  S  V  P  R  S  N  S  S  S  S  V  S  S  V  A  R  S  L  L  P  A  R  R  R  L  K  L  D  P  S  N  K  L  Y  F  P   : Y  E  P  G  K  Q  V  R  S  A  I  K  I  K  N  S  S  K  S  H  V  A  F  K  :  F  Q  T  T  A  P  K  S  C  F  M  R  P  P  G  A  I  L  A  P  G  E  S  I  I  A  T   : V  F  K  F  V  E  H  P  E  N  N  E  K  P  M  D  Q  K  S  R  V  K  F  K  I  M  S  L  K  V  K  G  P  M  D  Y  V  P  E  L  :  F  E  E  Q  K  D  Q  V  A  V  E  Q  I  L  R  V  I  F  L  D  V  E  R  P  S  P  :  T  L  E  K  L  K  R  Q  L  A  E  A  D  A  A  L  E  E  R  K  K  P  V  E  D  T  G  P  K  I  I  G  E  G  L  V  I  D  E  W  :  K  E  R  R  E  R  Y  L  A  R  Q  Q  V  E  G  G  V  E  S  V  *  L  A  G  I  V  S  T  S  *  L  W  L  E  K  I  P  A  L  L  L  C  V  I  G  C  S  I  M  S  L  N  T  L  V  N  I  H  K  R  E  F  Q  C  P  N  H  S  Y  L  V  *  P  Q  S  C  I  *  C  H  S  F  *  V  M  R  D  F  Q  L   </second_frame>
            <third_frame>   H  F  Q  N  S  T  P  C  Y  S  K  K  C  C  Q  Q  A  V  N  K  G  D  C  T  T  S  F  *  N  L  R  I  T  G  E  S  S  L  V  S  G  I  *  W  R  S  P  T  R  R  T  V  K  F  G  D  C  L  S  S  L  F  E  T  H  S  Q  R  R  L  R  V  R  L  R  I  I  L  F  I  T  A  V  N  N  I  N  L  S  E  I  L  L  W  M  M  D  R  F  L  V  A  T  V  P  A  P  F  L  Q  *  P  G  L  C  F  L  H  A  V  G  *  N  L  I  L  P  I  S  F  I  F  L  :  M  N  L  V  S  K  F  E  V  L  S  R  *  K  T  P  A  S  L  T  *  L  S  S :   S  K  Q  L  H  P  K  A  V  S  C  V  L  P  E  Q  F  S  P  P  V  R  A  S  L  Q  P  :  Y  S  S  L  *  S  I  Q  K  I  M  K  N  Q  W  T  R  R  A  E  *  S  S  R  S  *  A  S  R  *  K  D  R  W  T  M  Y  L  S  C :   L  K  S  K  R  I  K  *  P  *  S  K  F  C  G  L  S  F  S  M  W  N  V  L  V  Q :   L  W  K  N  *  S  A  S  W  R  R  Q  T  L  L  L  R  N  A  R  S  L  W  K  I  Q  V  Q  R  L  L  V  K  G  L  S  *  M  N  G :   R  K  E  E  R  G  T  *  L  G  S  K  L  K  A  V  W  N  L  Y  N  L  Q  V  L  F  R  H  L  S  F  G  W  K  R  Y  Q  P  Y  C  C  V  *  L  V  V  L  L  C  H  *  T  H  *  *  T  F  T  R  E  N  F  N  V  P  I  T  V  T  W  Y  N  L  K  A  V  Y  N  V  I  P  F  K  *  *  E  I  F  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117722" stop="117428"/>
                    <exon start="115424" stop="115354"/>
                    <exon start="115186" stop="115105"/>
                    <exon start="114965" stop="114847"/>
                    <exon start="114420" stop="114343"/>
                    <exon start="114204" stop="114085"/>
                    <exon start="113986" stop="113924"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLSFRYLMAIADEKDGKVWGLFKLPFRNAQSTTTSRSSSHNTLHYRSQQHQSLGNTSLDDGSVPRSNSSSSVSSVARSLLPARRRLKLDPSNKLYFPYEPGKQVRSAIKIKNSSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEHPENNEKPMDQKSRVKFKIMSLKVKGPMDYVPELFEEQKDQVAVEQILRVIFLDVERPSPTLEKLKRQLAEADAALEERKKPVEDTGPKIIGEGLVIDEWKERRERYLARQQVEGGVESV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113945" stop="113715"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRCGICITCRYCFDILALAGKDTSLIVVCNWLFYYVTKHISEHSQERISMSQSQLLGITSKLYIMSFLLSNERFSVE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="116362" e_stop="116263"/>
            <exon e_start="115424" e_stop="115354"/>
            <exon e_start="115186" e_stop="115105"/>
            <exon e_start="114965" e_stop="114847"/>
            <exon e_start="114420" e_stop="114343"/>
            <exon e_start="114204" e_stop="114085"/>
            <exon e_start="113986" e_stop="113717"/>
            <exon e_start="113569" e_stop="113548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.826" acc_prob="0.923" e_score="0.980"/>
          <exon-intron don_prob="0.948" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.763" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.219" e_score="1.000"/>
          <exon-only e_score="0.682"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="116362" e_stop="116263" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.826" acc_prob="0.923">
            <gDNA_intron_boundary i_start="116262" i_stop="115425" i_length="838"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115424" e_stop="115354" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.946">
            <gDNA_intron_boundary i_start="115353" i_stop="115187" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115186" e_stop="115105" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="115104" i_stop="114966" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114965" e_stop="114847" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.854">
            <gDNA_intron_boundary i_start="114846" i_stop="114421" i_length="426"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114420" e_stop="114343" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.763" acc_prob="0.935">
            <gDNA_intron_boundary i_start="114342" i_stop="114205" i_length="138"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114204" e_stop="114085" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.945" acc_prob="0.924">
            <gDNA_intron_boundary i_start="114084" i_stop="113987" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="113986" e_stop="113717" e_length="270"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.219">
            <gDNA_intron_boundary i_start="113716" i_stop="113570" i_length="147"/>
          </intron>
          <exon e_serial="8" e_score="0.682">
            <gDNA_exon_boundary e_start="113569" e_stop="113548" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116362" stop="116263"/>
              <exon start="115424" stop="115354"/>
              <exon start="115186" stop="115105"/>
              <exon start="114965" stop="114847"/>
              <exon start="114420" stop="114343"/>
              <exon start="114204" stop="114085"/>
              <exon start="113986" stop="113717"/>
              <exon start="113569" stop="113548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAG : ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG : TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG : TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG : TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA : ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG : AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTG : AAGCAAAACAAGAAACAGATAC</gDNA_template>
            <first_frame> Y  Q  *  G  R  I  T  K  P  T  M  Q  K  I  I  Q  Y  I  I  F  N  *  *  V  S  R  S  G  C  Y  A  T  L   : D  E  P  G  K  Q  V  R  S  A  I  K  I  K  N  S  S  K  S  H  V  A  F  K  :  F  Q  T  T  A  P  K  S  C  F  M  R  P  P  G  A  I  L  A  P  G  E  S  I  I  A  T   : V  F  K  F  V  E  H  P  E  N  N  E  K  P  M  D  Q  K  S  R  V  K  F  K  I  M  S  L  K  V  K  G  P  M  D  Y  V  P  E  L  :  F  E  E  Q  K  D  Q  V  A  V  E  Q  I  L  R  V  I  F  L  D  V  E  R  P  S  P  :  T  L  E  K  L  K  R  Q  L  A  E  A  D  A  A  L  E  E  R  K  K  P  V  E  D  T  G  P  K  I  I  G  E  G  L  V  I  D  E  W  :  K  E  R  R  E  R  Y  L  A  R  Q  Q  V  E  G  G  V  E  S  V  *  L  A  G  I  V  S  T  S  *  L  W  L  E  K  I  P  A  L  L  L  C  V  I  G  C  S  I  M  S  L  N  T  L  V  N  I  H  K  R  E  F  Q  C  P  N  H  S  Y  L  V  *  P  Q  S  C  I  *  C  H  S  F  *  V  M  R  D  F  Q  L  :  K  Q  N  K  K  Q  I  </first_frame>
            <second_frame>  I  S  E  V  E  L  P  N  P  L  C  R  K  *  F  N  I  S  S  L  I  N  E  S  H  A  V  G  V  M  Q  H  *  :  M  N  L  V  S  K  F  E  V  L  S  R  *  K  T  P  A  S  L  T  *  L  S  S :   S  K  Q  L  H  P  K  A  V  S  C  V  L  P  E  Q  F  S  P  P  V  R  A  S  L  Q  P  :  Y  S  S  L  *  S  I  Q  K  I  M  K  N  Q  W  T  R  R  A  E  *  S  S  R  S  *  A  S  R  *  K  D  R  W  T  M  Y  L  S  C :   L  K  S  K  R  I  K  *  P  *  S  K  F  C  G  L  S  F  S  M  W  N  V  L  V  Q :   L  W  K  N  *  S  A  S  W  R  R  Q  T  L  L  L  R  N  A  R  S  L  W  K  I  Q  V  Q  R  L  L  V  K  G  L  S  *  M  N  G :   R  K  E  E  R  G  T  *  L  G  S  K  L  K  A  V  W  N  L  Y  N  L  Q  V  L  F  R  H  L  S  F  G  W  K  R  Y  Q  P  Y  C  C  V  *  L  V  V  L  L  C  H  *  T  H  *  *  T  F  T  R  E  N  F  N  V  P  I  T  V  T  W  Y  N  L  K  A  V  Y  N  V  I  P  F  K  *  *  E  I  F  S  * :   S  K  T  R  N  R  Y </second_frame>
            <third_frame>   S  V  R  S  N  Y  Q  T  H  Y  A  E  N  N  S  I  Y  H  L  *  L  M  S  L  T  Q  W  V  L  C  N  T  R :   *  T  W  *  A  S  S  K  C  Y  Q  D  K  K  L  Q  Q  V  S  R  S  F  Q   : V  P  N  N  C  T  Q  K  L  F  H  A  S  S  R  S  N  S  R  P  R  *  E  H  H  C  N  R :   I  Q  V  C  R  A  S  R  K  *  *  K  T  N  G  P  E  E  Q  S  E  V  Q  D  H  E  P  Q  G  E  R  T  D  G  L  C  T  *  A   : V  *  R  A  K  G  S  S  S  R  R  A  N  S  A  G  Y  L  S  R  C  G  T  S  *  S   : N  F  G  K  I  E  A  P  A  G  G  G  R  R  C  S  *  G  T  Q  E  A  C  G  R  Y  R  S  K  D  Y  W  *  R  A  C  H  R  *  M   : E  G  K  K  R  E  V  P  S  S  A  A  S  *  R  R  C  G  I  C  I  T  C  R  Y  C  F  D  I  L  A  L  A  G  K  D  T  S  L  I  V  V  C  N  W  L  F  Y  Y  V  T  K  H  I  S  E  H  S  Q  E  R  I  S  M  S  Q  S  Q  L  L  G  I  T  S  K  L  Y  I  M  S  F  L  L  S  N  E  R  F  S  V   : E  A  K  Q  E  T  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116293" stop="116263"/>
                    <exon start="115424" stop="115354"/>
                    <exon start="115186" stop="115105"/>
                    <exon start="114965" stop="114847"/>
                    <exon start="114420" stop="114343"/>
                    <exon start="114204" stop="114085"/>
                    <exon start="113986" stop="113924"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSRSGCYATLDEPGKQVRSAIKIKNSSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEHPENNEKPMDQKSRVKFKIMSLKVKGPMDYVPELFEEQKDQVAVEQILRVIFLDVERPSPTLEKLKRQLAEADAALEERKKPVEDTGPKIIGEGLVIDEWKERRERYLARQQVEGGVESV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113945" stop="113717"/>
                    <exon start="113569" stop="113550"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRCGICITCRYCFDILALAGKDTSLIVVCNWLFYYVTKHISEHSQERISMSQSQLLGITSKLYIMSFLLSNERFSVEAKQETD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="120100" PGL_stop="123211"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120100" e_stop="120142"/>
            <exon e_start="122657" e_stop="123211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.698"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.698">
            <gDNA_exon_boundary e_start="120100" e_stop="120142" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="120143" i_stop="122656" i_length="2514"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="122657" e_stop="123211" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120100" stop="120142"/>
              <exon start="122657" stop="123211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722455" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTCTCTTTCTAAACTTTTTATATTTTCTGTTTTTTCAAG : CTGTACTAGTTGTAGTTCATTCACTGTGAACTATCAAATATACATGCACTAGCCAGTCTAAAAAACTCACTGGTCTTTCCTTATATATATATATACAAAAACCCTAAACCCAAGACTCAGATGAGTGTGTATATACATATATGACATTTTGTACAAAAGACTCATTTTGATGAGTCAAAGCAGAGCCACTGATGAGATTAAGGACCCCAGCAGGTCAAGAACATGACAGTCCTAAAAGACTCTTCCGCCTGTTTAATCTTCTTAGCCTTTGCTGCTTTTATCAGAGCATTGGTATCAACACCACCAGAGAATTTCCATGTCTGCCTTGAAGATGATCCAGCACCAGCACCACAAGACGAGTCCTTAAGAGTCTTGATTCCACCGTCACCTTGTCTTGTTGCTTGATGATCCTTTACCCCTTGATGAATCACCCTCATCACACCTTGATGCACTCTACTGATCATGTAACAACTAGTTTTTTTTTTTTAATCAAGACGATTCTGTTTTGTAAAATTTCCAAGTGTAATGGAACGATATATATAGAGGAACTCATGA</gDNA_template>
            <first_frame> F  S  L  F  L  N  F  L  Y  F  L  F  F  Q   : A  V  L  V  V  V  H  S  L  *  T  I  K  Y  T  C  T  S  Q  S  K  K  L  T  G  L  S  L  Y  I  Y  I  Q  K  P  *  T  Q  D  S  D  E  C  V  Y  T  Y  M  T  F  C  T  K  D  S  F  *  *  V  K  A  E  P  L  M  R  L  R  T  P  A  G  Q  E  H  D  S  P  K  R  L  F  R  L  F  N  L  L  S  L  C  C  F  Y  Q  S  I  G  I  N  T  T  R  E  F  P  C  L  P  *  R  *  S  S  T  S  T  T  R  R  V  L  K  S  L  D  S  T  V  T  L  S  C  C  L  M  I  L  Y  P  L  M  N  H  P  H  H  T  L  M  H  S  T  D  H  V  T  T  S  F  F  F  L  I  K  T  I  L  F  C  K  I  S  K  C  N  G  T  I  Y  I  E  E  L  M  </first_frame>
            <second_frame>  F  L  S  F  *  T  F  Y  I  F  C  F  F  K  :  L  Y  *  L  *  F  I  H  C  E  L  S  N  I  H  A  L  A  S  L  K  N  S  L  V  F  P  Y  I  Y  I  Y  K  N  P  K  P  K  T  Q  M  S  V  Y  I  H  I  *  H  F  V  Q  K  T  H  F  D  E  S  K  Q  S  H  *  *  D  *  G  P  Q  Q  V  K  N  M  T  V  L  K  D  S  S  A  C  L  I  F  L  A  F  A  A  F  I  R  A  L  V  S  T  P  P  E  N  F  H  V  C  L  E  D  D  P  A  P  A  P  Q  D  E  S  L  R  V  L  I  P  P  S  P  C  L  V  A  *  *  S  F  T  P  *  *  I  T  L  I  T  P  *  C  T  L  L  I  M  *  Q  L  V  F  F  F  *  S  R  R  F  C  F  V  K  F  P  S  V  M  E  R  Y  I  *  R  N  S  * </second_frame>
            <third_frame>   F  S  L  S  K  L  F  I  F  S  V  F  S  S :   C  T  S  C  S  S  F  T  V  N  Y  Q  I  Y  M  H  *  P  V  *  K  T  H  W  S  F  L  I  Y  I  Y  T  K  T  L  N  P  R  L  R  *  V  C  I  Y  I  Y  D  I  L  Y  K  R  L  I  L  M  S  Q  S  R  A  T  D  E  I  K  D  P  S  R  S  R  T  *  Q  S  *  K  T  L  P  P  V  *  S  S  *  P  L  L  L  L  S  E  H  W  Y  Q  H  H  Q  R  I  S  M  S  A  L  K  M  I  Q  H  Q  H  H  K  T  S  P  *  E  S  *  F  H  R  H  L  V  L  L  L  D  D  P  L  P  L  D  E  S  P  S  S  H  L  D  A  L  Y  *  S  C  N  N  *  F  F  F  F  N  Q  D  D  S  V  L  *  N  F  Q  V  *  W  N  D  I  Y  R  G  T  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122992" stop="123210"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSTSTTRRVLKSLDSTVTLSCCLMILYPLMNHPHHTLMHSTDHVTTSFFFLIKTILFCKISKCNGTIYIEELM</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122858" stop="123061"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPQQVKNMTVLKDSSACLIFLAFAAFIRALVSTPPENFHVCLEDDPAPAPQDESLRVLIPPSPCLVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="125791" PGL_stop="128266"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125791" e_stop="126012"/>
            <exon e_start="126146" e_stop="126248"/>
            <exon e_start="126954" e_stop="127056"/>
            <exon e_start="127376" e_stop="127584"/>
            <exon e_start="128231" e_stop="128266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.674" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125791" e_stop="126012" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.674" acc_prob="0.895">
            <gDNA_intron_boundary i_start="126013" i_stop="126145" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126146" e_stop="126248" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.849" acc_prob="0.993">
            <gDNA_intron_boundary i_start="126249" i_stop="126953" i_length="705"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="126954" e_stop="127056" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.838">
            <gDNA_intron_boundary i_start="127057" i_stop="127375" i_length="319"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="127376" e_stop="127584" e_length="209"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.962">
            <gDNA_intron_boundary i_start="127585" i_stop="128230" i_length="646"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="128231" e_stop="128266" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125791" stop="126012"/>
              <exon start="126146" stop="126248"/>
              <exon start="126954" stop="127056"/>
              <exon start="127376" stop="127584"/>
              <exon start="128231" stop="128266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125813" stop="126012"/>
              <exon start="126146" stop="126248"/>
              <exon start="126954" stop="127056"/>
              <exon start="127376" stop="127521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125817" stop="126012"/>
              <exon start="126146" stop="126248"/>
              <exon start="126954" stop="127056"/>
              <exon start="127376" stop="127472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125817" stop="126012"/>
              <exon start="126146" stop="126248"/>
              <exon start="126954" stop="127005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCACCACTTTCCACCATTACTCTTCAAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAG : GTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGAC : GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG : AGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGG : ATTCTGGATCCTATTGATGGTACACGAGGGTTTGTT</gDNA_template>
            <first_frame> S  T  T  F  H  H  Y  S  S  S  K  Q  I  *  P  R  Y  I  S  Q  K  *  L  Y  I  P  G  I  T  T  N  N  Y  L  S  *  L  Q  F  H  S  L  Y  G  S  S  T  L  L  R  L  P  L  S  C  S  S  S  S  T  S  L  P  Y  A  T  S  P  A  V  R  R  R  *  :  V  K  F  E  P  S  V  R  G  A  E  S  *  V  L  *  R  A  R  S  C  C  *  C  C  R  A  S  L  S  S  L  R  *   : R  E  E  V  T  V  L  K  *  W  *  D  S  *  E  K  *  P  D  P  S  H  H  C  R  F  W  S  A  G  F  S  *  L  G :   D  E  Q  T  F  S  L  H  T  F  G  G  *  R  G  L  C  I  L  A  F  K  *  S  G  W  L  S  G  *  C  C  K  G  *  S  N  F  R  R  *  S  N  R  R  *  Y  F  E  S  N  *  Q  R  G  K  G  C  L  C  I  C  A  *  A  S  H  L  L   : D  S  G  S  Y  *  W  Y  T  R  V  C  </first_frame>
            <second_frame>  P  P  L  S  T  I  T  L  Q  A  N  K  F  N  P  G  T  F  R  K  N  S  C  T  F  Q  E  *  Q  L  T  T  T  C  L  D  S  N  F  I  A  F  M  D  L  L  R  Y  S  A  S  R  Y  P  A  A  H  L  Q  L  P  F  R  T  P  L  R  R  R  F  V  A  V  R :   S  S  L  S  L  P  F  A  E  Q  K  A  K  Y  Y  S  E  L  E  A  A  V  D  V  V  E  R  A  C  R  L  C  V  D  :  V  K  K  S  L  F  S  S  D  G  R  I  L  E  K  N  D  Q  T  P  V  T  I  A  D  F  G  V  Q  A  L  V  S  L   : E  M  N  K  L  F  P  S  I  P  L  V  A  E  E  D  S  A  F  L  R  S  N  N  L  V  G  S  V  V  D  V  V  K  D  K  A  T  L  G  D  E  V  T  E  D  N  I  L  K  A  I  D  R  G  G  K  D  A  Y  V  F  A  P  E  P  A  T  Y  W  :  I  L  D  P  I  D  G  T  R  G  F  V </second_frame>
            <third_frame>   H  H  F  P  P  L  L  F  K  Q  T  N  L  T  Q  V  H  F  A  K  I  V  V  H  S  R  N  N  N  *  Q  L  P  V  L  T  P  I  S  *  P  L  W  I  F  Y  V  T  P  P  P  A  I  L  Q  L  I  F  N  F  P  S  V  R  H  F  A  G  G  S  S  P  L   : G  Q  V  *  A  F  R  S  R  S  R  K  L  S  I  I  A  S  S  K  L  L  L  M  L  S  S  E  L  V  V  S  A  L  T :   *  R  S  H  C  S  Q  V  M  V  G  F  L  R  K  M  T  R  P  Q  S  P  L  Q  I  L  E  C  R  L  *  L  A  W  :  R  *  T  N  F  F  P  P  Y  L  W  W  L  K  R  T  L  H  S  C  V  Q  I  I  W  L  A  Q  W  L  M  L  *  R  I  K  Q  L  *  E  M  K  *  Q  K  I  I  F  *  K  Q  L  T  E  G  E  R  M  L  M  Y  L  R  L  S  Q  P  L  T  G :   F  W  I  L  L  M  V  H  E  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125876" stop="126012"/>
                    <exon start="126146" stop="126248"/>
                    <exon start="126954" stop="127056"/>
                    <exon start="127376" stop="127584"/>
                    <exon start="128231" stop="128266"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLTTTCLDSNFIAFMDLLRYSASRYPAAHLQLPFRTPLRRRFVAVRSSLSLPFAEQKAKYYSELEAAVDVVERACRLCVDVKKSLFSSDGRILEKNDQTPVTIADFGVQALVSLEMNKLFPSIPLVAEEDSAFLRSNNLVGSVVDVVKDKATLGDEVTEDNILKAIDRGGKDAYVFAPEPATYWILDPIDGTRGFV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="125813" e_stop="126012"/>
            <exon e_start="126146" e_stop="126248"/>
            <exon e_start="126954" e_stop="127056"/>
            <exon e_start="127376" e_stop="127584"/>
            <exon e_start="127848" e_stop="127854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.674" acc_prob="0.895" e_score="0.929"/>
          <exon-intron don_prob="0.849" acc_prob="0.993" e_score="0.981"/>
          <exon-intron don_prob="0.972" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.421" e_score="0.995"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="125813" e_stop="126012" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.674" acc_prob="0.895">
            <gDNA_intron_boundary i_start="126013" i_stop="126145" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="126146" e_stop="126248" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.849" acc_prob="0.993">
            <gDNA_intron_boundary i_start="126249" i_stop="126953" i_length="705"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="126954" e_stop="127056" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.838">
            <gDNA_intron_boundary i_start="127057" i_stop="127375" i_length="319"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="127376" e_stop="127584" e_length="209"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.421">
            <gDNA_intron_boundary i_start="127585" i_stop="127847" i_length="263"/>
          </intron>
          <exon e_serial="5" e_score="0.714">
            <gDNA_exon_boundary e_start="127848" e_stop="127854" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125813" stop="126012"/>
              <exon start="126146" stop="126248"/>
              <exon start="126954" stop="127056"/>
              <exon start="127376" stop="127521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125817" stop="126012"/>
              <exon start="126146" stop="126248"/>
              <exon start="126954" stop="127056"/>
              <exon start="127376" stop="127472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125817" stop="126012"/>
              <exon start="126146" stop="126248"/>
              <exon start="126954" stop="127005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125947" stop="126012"/>
              <exon start="126146" stop="126248"/>
              <exon start="126954" stop="127056"/>
              <exon start="127376" stop="127584"/>
              <exon start="127848" stop="127854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCAAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAG : GTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGAC : GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG : AGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGG : AATTGTG</gDNA_template>
            <first_frame> L  Q  A  N  K  F  N  P  G  T  F  R  K  N  S  C  T  F  Q  E  *  Q  L  T  T  T  C  L  D  S  N  F  I  A  F  M  D  L  L  R  Y  S  A  S  R  Y  P  A  A  H  L  Q  L  P  F  R  T  P  L  R  R  R  F  V  A  V  R :   S  S  L  S  L  P  F  A  E  Q  K  A  K  Y  Y  S  E  L  E  A  A  V  D  V  V  E  R  A  C  R  L  C  V  D  :  V  K  K  S  L  F  S  S  D  G  R  I  L  E  K  N  D  Q  T  P  V  T  I  A  D  F  G  V  Q  A  L  V  S  L   : E  M  N  K  L  F  P  S  I  P  L  V  A  E  E  D  S  A  F  L  R  S  N  N  L  V  G  S  V  V  D  V  V  K  D  K  A  T  L  G  D  E  V  T  E  D  N  I  L  K  A  I  D  R  G  G  K  D  A  Y  V  F  A  P  E  P  A  T  Y  W  :  N  C  </first_frame>
            <second_frame>  F  K  Q  T  N  L  T  Q  V  H  F  A  K  I  V  V  H  S  R  N  N  N  *  Q  L  P  V  L  T  P  I  S  *  P  L  W  I  F  Y  V  T  P  P  P  A  I  L  Q  L  I  F  N  F  P  S  V  R  H  F  A  G  G  S  S  P  L   : G  Q  V  *  A  F  R  S  R  S  R  K  L  S  I  I  A  S  S  K  L  L  L  M  L  S  S  E  L  V  V  S  A  L  T :   *  R  S  H  C  S  Q  V  M  V  G  F  L  R  K  M  T  R  P  Q  S  P  L  Q  I  L  E  C  R  L  *  L  A  W  :  R  *  T  N  F  F  P  P  Y  L  W  W  L  K  R  T  L  H  S  C  V  Q  I  I  W  L  A  Q  W  L  M  L  *  R  I  K  Q  L  *  E  M  K  *  Q  K  I  I  F  *  K  Q  L  T  E  G  E  R  M  L  M  Y  L  R  L  S  Q  P  L  T  G :   I  V </second_frame>
            <third_frame>   S  S  K  Q  I  *  P  R  Y  I  S  Q  K  *  L  Y  I  P  G  I  T  T  N  N  Y  L  S  *  L  Q  F  H  S  L  Y  G  S  S  T  L  L  R  L  P  L  S  C  S  S  S  S  T  S  L  P  Y  A  T  S  P  A  V  R  R  R  *  :  V  K  F  E  P  S  V  R  G  A  E  S  *  V  L  *  R  A  R  S  C  C  *  C  C  R  A  S  L  S  S  L  R  *   : R  E  E  V  T  V  L  K  *  W  *  D  S  *  E  K  *  P  D  P  S  H  H  C  R  F  W  S  A  G  F  S  *  L  G :   D  E  Q  T  F  S  L  H  T  F  G  G  *  R  G  L  C  I  L  A  F  K  *  S  G  W  L  S  G  *  C  C  K  G  *  S  N  F  R  R  *  S  N  R  R  *  Y  F  E  S  N  *  Q  R  G  K  G  C  L  C  I  C  A  *  A  S  H  L  L   : E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125876" stop="126012"/>
                    <exon start="126146" stop="126248"/>
                    <exon start="126954" stop="127056"/>
                    <exon start="127376" stop="127584"/>
                    <exon start="127848" stop="127853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLTTTCLDSNFIAFMDLLRYSASRYPAAHLQLPFRTPLRRRFVAVRSSLSLPFAEQKAKYYSELEAAVDVVERACRLCVDVKKSLFSSDGRILEKNDQTPVTIADFGVQALVSLEMNKLFPSIPLVAEEDSAFLRSNNLVGSVVDVVKDKATLGDEVTEDNILKAIDRGGKDAYVFAPEPATYWNC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="125843" e_stop="126248"/>
            <exon e_start="126954" e_stop="127056"/>
            <exon e_start="127376" e_stop="127457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.849" acc_prob="0.993" e_score="0.926"/>
          <exon-intron don_prob="0.972" acc_prob="0.838" e_score="0.990"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="125843" e_stop="126248" e_length="406"/>
          </exon>
          <intron i_serial="1" don_prob="0.849" acc_prob="0.993">
            <gDNA_intron_boundary i_start="126249" i_stop="126953" i_length="705"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="126954" e_stop="127056" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.838">
            <gDNA_intron_boundary i_start="127057" i_stop="127375" i_length="319"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="127376" e_stop="127457" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125843" stop="126248"/>
              <exon start="126954" stop="127056"/>
              <exon start="127376" stop="127457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125843" stop="126248"/>
              <exon start="126954" stop="127056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATATTTTTTTTCTTCAGTTGTTGAATTCGTATATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGAC : GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG : AGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTC</gDNA_template>
            <first_frame> F  R  K  N  S  C  T  F  Q  E  *  Q  L  T  T  T  C  L  D  S  N  F  I  A  F  M  D  L  L  R  Y  S  A  S  R  Y  P  A  A  H  L  Q  L  P  F  R  T  P  L  R  R  R  F  V  A  V  R  S  P  I  A  D  T  S  L  H  I  F  F  L  Q  L  L  N  S  Y  I  R  P  Q  L  V  *  D  *  D  T  H  *  L  I  D  I  *  V  C  F  F  F  F  Q  V  K  F  E  P  S  V  R  G  A  E  S  *  V  L  *  R  A  R  S  C  C  *  C  C  R  A  S  L  S  S  L  R  *   : R  E  E  V  T  V  L  K  *  W  *  D  S  *  E  K  *  P  D  P  S  H  H  C  R  F  W  S  A  G  F  S  *  L  G :   D  E  Q  T  F  S  L  H  T  F  G  G  *  R  G  L  C  I  L  A  F  K  *  S  G  W  L </first_frame>
            <second_frame>  F  A  K  I  V  V  H  S  R  N  N  N  *  Q  L  P  V  L  T  P  I  S  *  P  L  W  I  F  Y  V  T  P  P  P  A  I  L  Q  L  I  F  N  F  P  S  V  R  H  F  A  G  G  S  S  P  L  G  L  P  S  P  T  L  L  C  I  F  F  F  F  S  C  *  I  R  I  F  D  L  N  *  F  E  T  E  T  H  I  D  *  L  I  Y  E  C  A  F  S  S  S  R  S  S  L  S  L  P  F  A  E  Q  K  A  K  Y  Y  S  E  L  E  A  A  V  D  V  V  E  R  A  C  R  L  C  V  D  :  V  K  K  S  L  F  S  S  D  G  R  I  L  E  K  N  D  Q  T  P  V  T  I  A  D  F  G  V  Q  A  L  V  S  L   : E  M  N  K  L  F  P  S  I  P  L  V  A  E  E  D  S  A  F  L  R  S  N  N  L  V  G   </second_frame>
            <third_frame>   S  Q  K  *  L  Y  I  P  G  I  T  T  N  N  Y  L  S  *  L  Q  F  H  S  L  Y  G  S  S  T  L  L  R  L  P  L  S  C  S  S  S  S  T  S  L  P  Y  A  T  S  P  A  V  R  R  R  *  V  S  H  R  R  H  F  S  A  Y  F  F  S  S  V  V  E  F  V  Y  S  T  S  I  S  L  R  L  R  H  T  L  I  D  *  Y  M  S  V  L  F  L  L  P  G  Q  V  *  A  F  R  S  R  S  R  K  L  S  I  I  A  S  S  K  L  L  L  M  L  S  S  E  L  V  V  S  A  L  T :   *  R  S  H  C  S  Q  V  M  V  G  F  L  R  K  M  T  R  P  Q  S  P  L  Q  I  L  E  C  R  L  *  L  A  W  :  R  *  T  N  F  F  P  P  Y  L  W  W  L  K  R  T  L  H  S  C  V  Q  I  I  W  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126114" stop="126248"/>
                    <exon start="126954" stop="127056"/>
                    <exon start="127376" stop="127455"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIYECAFSSSRSSLSLPFAEQKAKYYSELEAAVDVVERACRLCVDVKKSLFSSDGRILEKNDQTPVTIADFGVQALVSLEMNKLFPSIPLVAEEDSAFLRSNNLVG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125876" stop="126091"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLTTTCLDSNFIAFMDLLRYSASRYPAAHLQLPFRTPLRRRFVAVRSPIADTSLHIFFLQLLNSYIRPQLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="129337" PGL_stop="136964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129337" e_stop="129433"/>
            <exon e_start="130650" e_stop="130728"/>
            <exon e_start="130798" e_stop="130848"/>
            <exon e_start="136513" e_stop="136964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.964" e_score="0.979"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="129337" e_stop="129433" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.964">
            <gDNA_intron_boundary i_start="129434" i_stop="130649" i_length="1216"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="130650" e_stop="130728" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="130729" i_stop="130797" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="130798" e_stop="130848" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="130849" i_stop="136512" i_length="5664"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="136513" e_stop="136964" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129337" stop="129433"/>
              <exon start="130650" stop="130728"/>
              <exon start="130798" stop="130848"/>
              <exon start="136513" stop="136855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130666" stop="130728"/>
              <exon start="130798" stop="130848"/>
              <exon start="136513" stop="136802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417843" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130695" stop="130728"/>
              <exon start="130798" stop="130848"/>
              <exon start="136513" stop="136803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130698" stop="130728"/>
              <exon start="130798" stop="130848"/>
              <exon start="136513" stop="136964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAATCTTTACCCTTGTCAGGTTTATTTGATGCAAAAACGGACTCTGAGAACATAGGAGAAGGGAACATACTTCTTCTGTCTGCATGCTGTGGGAG : TTTGTGCAAATATCTGATGGTGGCTTCTGGTAGAGCATCAGTTTACATTCAGGGGAAGAAGGCGACATCTATTATCAAG : GTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAG : GTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGCTTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCATTTTCTTCCTCCTCGTACTCATCAGTATCTCTCTGTTGTTTCTCATAAATACCTGTATCGTTCTTCTTTCATCTGTATGGAAGGATAATATTGGTGGAGAATGATTCATGACTGCAGTCTAGCTTATAAATCAATGTTCTTTTTGTTTCTTCCCTTCATTGAG</gDNA_template>
            <first_frame> G  N  L  Y  P  C  Q  V  Y  L  M  Q  K  R  T  L  R  T  *  E  K  G  T  Y  F  F  C  L  H  A  V  G   : V  C  A  N  I  *  W  W  L  L  V  E  H  Q  F  T  F  R  G  R  R  R  H  L  L  S  R :   S  G  T  M  L  L  E  S  Y  V  S  M  K  L  E  G  R :   *  L  T  G  K  E  V  H  L  I  L  Q  Q  I  K  L  N  G  D  S  S  F  L  Q  A  V  F  L  *  L  M  G  A  Y  I  A  R  L  S  K  *  S  L  Q  I  H  Q  F  F  D  R  L  L  A  L  L  *  Q  N  Q  *  S  D  T  N  E  D  F  L  Q  F  I  N  C  L  M  T  L  A  F  F  *  R  I  T  A  Y  R  S  I  H  I  N  V  S  P  F  S  S  S  S  Y  S  S  V  S  L  C  C  F  S  *  I  P  V  S  F  F  F  H  L  Y  G  R  I  I  L  V  E  N  D  S  *  L  Q  S  S  L  *  I  N  V  L  F  V  S  S  L  H  *  </first_frame>
            <second_frame>  E  I  F  T  L  V  R  F  I  *  C  K  N  G  L  *  E  H  R  R  R  E  H  T  S  S  V  C  M  L  W  E  :  F  V  Q  I  S  D  G  G  F  W  *  S  I  S  L  H  S  G  E  E  G  D  I  Y  Y  Q   : G  L  G  P  C  C  W  N  H  M  C  P  *  S  W  R  E   : G  D  *  L  G  R  K  F  T  *  F  C  S  R  S  N  *  T  E  T  H  L  S  F  R  R  C  S  C  D  *  W  E  L  T  *  Q  D  Y  R  N  D  L  F  K  F  I  S  S  L  T  G  F  W  H  Y  C  D  K  I  N  S  Q  I  L  M  K  I  S  S  N  S  S  I  V  *  *  H  L  H  S  F  D  E  S  Q  H  I  E  V  Y  I  S  M  S  L  H  F  L  P  P  R  T  H  Q  Y  L  S  V  V  S  H  K  Y  L  Y  R  S  S  F  I  C  M  E  G  *  Y  W  W  R  M  I  H  D  C  S  L  A  Y  K  S  M  F  F  L  F  L  P  F  I  E </second_frame>
            <third_frame>   K  S  L  P  L  S  G  L  F  D  A  K  T  D  S  E  N  I  G  E  G  N  I  L  L  L  S  A  C  C  G  S :   L  C  K  Y  L  M  V  A  S  G  R  A  S  V  Y  I  Q  G  K  K  A  T  S  I  I  K  :  V  W  D  H  A  V  G  I  I  C  V  H  E  A  G  G  K  :  V  T  D  W  E  G  S  S  L  D  F  A  A  D  Q  T  E  R  R  L  I  F  P  S  G  G  V  L  V  T  N  G  S  L  H  S  K  I  I  E  M  I  S  S  N  S  S  V  L  *  Q  A  F  G  I  I  V  T  K  S  I  V  R  Y  *  *  R  F  P  P  I  H  Q  L  F  N  D  T  C  I  L  L  T  N  H  S  I  *  K  Y  T  Y  Q  C  L  S  I  F  F  L  L  V  L  I  S  I  S  L  L  F  L  I  N  T  C  I  V  L  L  S  S  V  W  K  D  N  I  G  G  E  *  F  M  T  A  V  *  L  I  N  Q  C  S  F  C  F  F  P  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129339" stop="129433"/>
                    <exon start="130650" stop="130728"/>
                    <exon start="130798" stop="130848"/>
                    <exon start="136513" stop="136662"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSLPLSGLFDAKTDSENIGEGNILLLSACCGSLCKYLMVASGRASVYIQGKKATSIIKVWDHAVGIICVHEAGGKVTDWEGSSLDFAADQTERRLIFPSGGVLVTNGSLHSKIIEMISSNSSVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="133920" e_stop="134568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="133920" e_stop="134568" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133920" stop="134568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133921" stop="134305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  *  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  *  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  R  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  L  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133921" stop="134568"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETRSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="134579" e_stop="135374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="134579" e_stop="135374" e_length="796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134579" stop="135374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  V  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  I  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  K  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  Y  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  E  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  K  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  K  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0161P02.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134581" stop="135372"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKKYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLKGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="137732" PGL_stop="138634"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137732" e_stop="138634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="137732" e_stop="138634" e_length="903"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137732" stop="138634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701526" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGTTTTATATATTATAATAACAGCTTTTCCCCCAAAACTTGTGTCAATATAATTGAAAAATACATTGGTGGATTCCTAGCAGAAGCAAAGAAAAAAAAATCACCAGGAGATGTTTTCTCAACTTACTTAAGCCTGGGAGGCAAGAGTTACTTGGTACATGTGTTGGTGGAAGTTAGCAAGTAGCCAGCTAGGTGCATACAAGCTGGCCAGACACCATGTGAAGGTACCAGACAATGGTAACATAATATACTAACCAGTTCAGATACATATCCACTGGTCCTTTCACCTTGAGGCTCATAATTTTGAGCTTCACTTCAGCTCACTCTTTTGATCCTTCGGTTTTTCATTTTTATCTGGATGCTCTGCAAATTTGATTACTATGACATTGACTTAAGAAAATCTGAACAAAATACTTGCATGACACAATTACTCAGCTACAAATAGACAAAAACAACTTGAAAGAGAAGGACATAAACTAAGAGTGAAGAACATTACCAGCAGCTATCATCAGTGAGGACGCATGAAGCAGTTCTTGGTCCAGTTGTTTGGAACTAATGCACTGCAGTTGACAGCAACAAGTCAGCAACCATGTATGCACATTAATGTGTGTACACACGTCAATACATATTCTCAAAAGAGTTTCAAGCCAGAGTGACACTAAAAGAAAGAGGAGCTAGAACAGAGCGAGGTTGCCAAAACGGAAGAGAGACATGAAATCATGGTAATTTTGTCAACCTTGAAATGTACTTGAGACCTTTTTTATATAGCCAAGAAAAATCCGGGGGCCGCGGCGTATGGTTAAACCTTGTTGTTTGGTGGACAATGGACCCGCTCCTCTACTCTTCTACACTTAAATACTAGGCTTTTGTCTGTCGTGGATTCAAACTCCTTATGTGCAACT</gDNA_template>
            <first_frame> L  V  L  Y  I  I  I  T  A  F  P  P  K  L  V  S  I  *  L  K  N  T  L  V  D  S  *  Q  K  Q  R  K  K  N  H  Q  E  M  F  S  Q  L  T  *  A  W  E  A  R  V  T  W  Y  M  C  W  W  K  L  A  S  S  Q  L  G  A  Y  K  L  A  R  H  H  V  K  V  P  D  N  G  N  I  I  Y  *  P  V  Q  I  H  I  H  W  S  F  H  L  E  A  H  N  F  E  L  H  F  S  S  L  F  *  S  F  G  F  S  F  L  S  G  C  S  A  N  L  I  T  M  T  L  T  *  E  N  L  N  K  I  L  A  *  H  N  Y  S  A  T  N  R  Q  K  Q  L  E  R  E  G  H  K  L  R  V  K  N  I  T  S  S  Y  H  Q  *  G  R  M  K  Q  F  L  V  Q  L  F  G  T  N  A  L  Q  L  T  A  T  S  Q  Q  P  C  M  H  I  N  V  C  T  H  V  N  T  Y  S  Q  K  S  F  K  P  E  *  H  *  K  K  E  E  L  E  Q  S  E  V  A  K  T  E  E  R  H  E  I  M  V  I  L  S  T  L  K  C  T  *  D  L  F  Y  I  A  K  K  N  P  G  A  A  A  Y  G  *  T  L  L  F  G  G  Q  W  T  R  S  S  T  L  L  H  L  N  T  R  L  L  S  V  V  D  S  N  S  L  C  A  T </first_frame>
            <second_frame>  L  F  Y  I  L  *  *  Q  L  F  P  Q  N  L  C  Q  Y  N  *  K  I  H  W  W  I  P  S  R  S  K  E  K  K  I  T  R  R  C  F  L  N  L  L  K  P  G  R  Q  E  L  L  G  T  C  V  G  G  S  *  Q  V  A  S  *  V  H  T  S  W  P  D  T  M  *  R  Y  Q  T  M  V  T  *  Y  T  N  Q  F  R  Y  I  S  T  G  P  F  T  L  R  L  I  I  L  S  F  T  S  A  H  S  F  D  P  S  V  F  H  F  Y  L  D  A  L  Q  I  *  L  L  *  H  *  L  K  K  I  *  T  K  Y  L  H  D  T  I  T  Q  L  Q  I  D  K  N  N  L  K  E  K  D  I  N  *  E  *  R  T  L  P  A  A  I  I  S  E  D  A  *  S  S  S  W  S  S  C  L  E  L  M  H  C  S  *  Q  Q  Q  V  S  N  H  V  C  T  L  M  C  V  H  T  S  I  H  I  L  K  R  V  S  S  Q  S  D  T  K  R  K  R  S  *  N  R  A  R  L  P  K  R  K  R  D  M  K  S  W  *  F  C  Q  P  *  N  V  L  E  T  F  F  I  *  P  R  K  I  R  G  P  R  R  M  V  K  P  C  C  L  V  D  N  G  P  A  P  L  L  F  Y  T  *  I  L  G  F  C  L  S  W  I  Q  T  P  Y  V  Q   </second_frame>
            <third_frame>   C  F  I  Y  Y  N  N  S  F  S  P  K  T  C  V  N  I  I  E  K  Y  I  G  G  F  L  A  E  A  K  K  K  K  S  P  G  D  V  F  S  T  Y  L  S  L  G  G  K  S  Y  L  V  H  V  L  V  E  V  S  K  *  P  A  R  C  I  Q  A  G  Q  T  P  C  E  G  T  R  Q  W  *  H  N  I  L  T  S  S  D  T  Y  P  L  V  L  S  P  *  G  S  *  F  *  A  S  L  Q  L  T  L  L  I  L  R  F  F  I  F  I  W  M  L  C  K  F  D  Y  Y  D  I  D  L  R  K  S  E  Q  N  T  C  M  T  Q  L  L  S  Y  K  *  T  K  T  T  *  K  R  R  T  *  T  K  S  E  E  H  Y  Q  Q  L  S  S  V  R  T  H  E  A  V  L  G  P  V  V  W  N  *  C  T  A  V  D  S  N  K  S  A  T  M  Y  A  H  *  C  V  Y  T  R  Q  Y  I  F  S  K  E  F  Q  A  R  V  T  L  K  E  R  G  A  R  T  E  R  G  C  Q  N  G  R  E  T  *  N  H  G  N  F  V  N  L  E  M  Y  L  R  P  F  L  Y  S  Q  E  K  S  G  G  R  G  V  W  L  N  L  V  V  W  W  T  M  D  P  L  L  Y  S  S  T  L  K  Y  *  A  F  V  C  R  G  F  K  L  L  M  C  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0161P02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 152 chains have been computed
$ 
$ memory statistics:
$ 471216 bytes spliced alignments in total
$ 86 spliced alignments have been stored
$ 5479 bytes was the average size of a spliced alignment
$ 27472 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1616 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 181 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:32:08
-->
