<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:29:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379757" ref_strand="+" ref_description="SGN-E379757 [TUS-1-F15]">
      <seq>aaaataaaaaccatatttgttgtacactaatgacataaactcaagtttgatacttttatcagttggtaaaaatgtaagcaagcaaagaagtagtgaaggccggaatgagatgtcatatgtagtatacaatctgatgacactacttgctaggtctccactacaagaactagccataatgtgttctccctgtatggagatatatcagtcatttgcatttgcagaggcaagattgcatcttcagagtttctcataagattttacttttctgtgccagttgtagcatctccatccatgctattcttctttttctttccatcaccatgtctggaccttctaggggcttcatcctcgctctcgctttcatcatttctaaagctgttttcagtttgtggataatgtaccccttcatctggtccaacaactgagcctgcagtctcttgacccctaccttggtctggacctgaactgaatctatcgttcctttcattaaaaggagctcgctgatcctttttgacccgaggattttgagagggcggtggtgggggtggtgtaaatgatggatgcattcccattggtcgaccacctctgggtgggccaggtgctccaggacccattccacccatgaaagggggccttgctggacccatcatcatcccaaatccaccagcagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="6155" stop="7426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6455" g_stop="7126" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E379757" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6455" e_stop="7126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAAAACCATATTTGTTGTACACTAGTGACATAAACTCAAGTTTGATACTTTTATCAGTTGGTAAAAATGTAAGCAAGCAAAGAAGTAGTGAAGGCCGGAATGAGATGTCATATGTAGTATACAATCTGATGACACTACTTGCTAGGTCTCCACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTAGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGCTTCATCCTCGCTCTCGCTTTCATCATTTCTAAAGCTGTTTTCAGTTTGTGGATAATGTACTCCTTCATCTGGTCCAACAACTGAGCCTGCAGTCTCTTGACCCCTACCTTGGTCTGGACCTGAACTGAATCTATCGTTCCTTTCATTAAAAGGAGCTCGCTGATCCTTTTTGACCCGAGGATTTTGAGAGGGCGGTGGTGGGGGTGGTGTAAATGATGGATGCATTCCCATTGGTCGACCACCTCTGGGTGGGCCAGGTGCTCCAGGACCCATTCCACCCATGAAAGGGGGCCTTGCTGGACCCATCATCATCCCAAATCCACCAGCAGCC</genome_strand>
        <mrna_strand>AAAATAAAAACCATATTTGTTGTACACTAATGACATAAACTCAAGTTTGATACTTTTATCAGTTGGTAAAAATGTAAGCAAGCAAAGAAGTAGTGAAGGCCGGAATGAGATGTCATATGTAGTATACAATCTGATGACACTACTTGCTAGGTCTCCACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTTGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGCTTCATCCTCGCTCTCGCTTTCATCATTTCTAAAGCTGTTTTCAGTTTGTGGATAATGTACCCCTTCATCTGGTCCAACAACTGAGCCTGCAGTCTCTTGACCCCTACCTTGGTCTGGACCTGAACTGAATCTATCGTTCCTTTCATTAAAAGGAGCTCGCTGATCCTTTTTGACCCGAGGATTTTGAGAGGGCGGTGGTGGGGGTGGTGTAAATGATGGATGCATTCCCATTGGTCGACCACCTCTGGGTGGGCCAGGTGCTCCAGGACCCATTCCACCCATGAAAGGGGGCCTTGCTGGACCCATCATCATCCCAAATCCACCAGCAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201272" ref_strand="+" ref_description="SGN-E201272 [cLEC-10-H13]">
      <seq>accatatttgttgtacactaatgacataaactcaagtttgatacttttatcagttggtaaaaatgtaagcaagcaaagaagtagtgaaggccggaatgagatgtcatatgtagtatacaatctgatgacactacttgctaggtctccactacaagaactagccataatgtgttctccctgtatggagatatatcagtcatttgcatttgcagaggcaagattgcatcttcagagtttctcataagattttacttttttgtgccagtggtagcatctccatgcatgctattcttatttttctttccatcaccatgtatggaccttctaagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="6164" stop="7095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6464" g_stop="6795" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E201272" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6464" e_stop="6795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATATTTGTTGTACACTAGTGACATAAACTCAAGTTTGATACTTTTATCAGTTGGTAAAAATGTAAGCAAGCAAAGAAGTAGTGAAGGCCGGAATGAGATGTCATATGTAGTATACAATCTGATGACACTACTTGCTAGGTCTCCACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTAGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGC</genome_strand>
        <mrna_strand>ACCATATTTGTTGTACACTAATGACATAAACTCAAGTTTGATACTTTTATCAGTTGGTAAAAATGTAAGCAAGCAAAGAAGTAGTGAAGGCCGGAATGAGATGTCATATGTAGTATACAATCTGATGACACTACTTGCTAGGTCTCCACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTTTGTGCCAGTGGTAGCATCTCCATGCATGCTATTCTTATTTTTCTTTCCATCACCATGTATGGACCTTCTAAGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E380019" ref_strand="+" ref_description="SGN-E380019 [TUS-1-F15](-)">
      <seq>actacaagaactagccataatgtgttctccctgtatggagatatatcagtcatttgcatttgcagaggcaagattgcatcttcagagtttctcataagattttacttttctgtgccagttgtagcatctccatccatgctattcttctttttctttccatcaccatgtctggaccttctaggggcttcatcctcgctctcgctttcatcatttctaaagctgttttcagtttgtggataatgtaccccttcatctggtccaacaactgagcctgcagtctcttgacccctaccttggtctggacctgaactgaatctatcgttcctttcattaaaaggagctcgctgatcctttttgacccgaggattttgagagggcggtggtgggggtggtgtaaatgatggatgcattcccattggtcgaccacctctgggtgggccaggtgctccaggacccattccacccatgaaagggggccttgctggacccatcatcatcccaaatccaccagcagccggaggacggctgtgaaacatcatatcaccagggaatcgagggccaaatggtccaaaaggtcggccacccattccataaggatcaggcataggaaaaccatcaggtgtcattgatccataagaaaatccatcactcataatgcctggggggaagccccgcatcccagggaaaggcctggctccacgaaagagaactagaggaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="6311" stop="7631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6611" g_stop="7331" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E380019" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6611" e_stop="7331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTAGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGCTTCATCCTCGCTCTCGCTTTCATCATTTCTAAAGCTGTTTTCAGTTTGTGGATAATGTACTCCTTCATCTGGTCCAACAACTGAGCCTGCAGTCTCTTGACCCCTACCTTGGTCTGGACCTGAACTGAATCTATCGTTCCTTTCATTAAAAGGAGCTCGCTGATCCTTTTTGACCCGAGGATTTTGAGAGGGCGGTGGTGGGGGTGGTGTAAATGATGGATGCATTCCCATTGGTCGACCACCTCTGGGTGGGCCAGGTGCTCCAGGACCCATTCCACCCATGAAAGGGGGCCTTGCTGGACCCATCATCATCCCAAATCCACCAGCAGCCGGAGGACGGCTGTGAAACATCATATCACCAGGGAATCGAGGGCCAAATGGTCCAAAAGGTCGGCCACCCATTCCATAAGGATCAGGCATAGGAAAACCATCAGGTGTCATTGATCCATAAGAAAATCCATCACTCATAATGCCTGGGGGGAAGCCCCGCATCCCAGGGAAAGGCCTGGCTCCACGAAAAGGAACTAGAGGAGGCC</genome_strand>
        <mrna_strand>ACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTTGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGCTTCATCCTCGCTCTCGCTTTCATCATTTCTAAAGCTGTTTTCAGTTTGTGGATAATGTACCCCTTCATCTGGTCCAACAACTGAGCCTGCAGTCTCTTGACCCCTACCTTGGTCTGGACCTGAACTGAATCTATCGTTCCTTTCATTAAAAGGAGCTCGCTGATCCTTTTTGACCCGAGGATTTTGAGAGGGCGGTGGTGGGGGTGGTGTAAATGATGGATGCATTCCCATTGGTCGACCACCTCTGGGTGGGCCAGGTGCTCCAGGACCCATTCCACCCATGAAAGGGGGCCTTGCTGGACCCATCATCATCCCAAATCCACCAGCAGCCGGAGGACGGCTGTGAAACATCATATCACCAGGGAATCGAGGGCCAAATGGTCCAAAAGGTCGGCCACCCATTCCATAAGGATCAGGCATAGGAAAACCATCAGGTGTCATTGATCCATAAGAAAATCCATCACTCATAATGCCTGGGGGGAAGCCCCGCATCCCAGGGAAAGGCCTGGCTCCACGAAAGAGAACTAGAGGAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416274" ref_strand="+" ref_description="SGN-E416274 [STM-22-F12]">
      <seq>tttatgattctaacaaggctctagataaacaatttacagctgacatggacgactccaaattattcacctatttaagtagactgactgactacatgacctaagtaaagaccttgaaactctgaacacacctagatggtccttgaggcaggggtattgcagcctgattttgctggctgctgggaagggtttgtgtttgagttggggcaccctgatgttgaggctgttgaacttgttgttgatgctgttggtgcggttggccaatgggtggctctgctgctgtagatttcactgcttgattcattacattaggtacttgcggaatttgagatttgtctgcctgagttgaataatttgtattccgattttgaaaaaacctgtttgagtaaccataggatgtcaaattctgaattctctgaagaacttctaccactggaggtggaggtccaggcagctttgcatgtctatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="18794" stop="19861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19094" g_stop="19561" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E416274" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19094" e_stop="19561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGATTCTAACAAGGCTCTGGATAAACAATTTACAGCTGACATGGAAGACTCCAAATTATTCACCTATTTAAGTAGACAGGCTGACTACATGACCTAAGTAAAGACCTTGAAACTCTGAACACACCTAGATGGTCCTTGAGGCAGGGGTATTGCAGCCTGATTTTGCTGGGTGCCGGGAAGGGTTTGTGTTTGAGTTGGGGGCCCCTGATGTTGAGGCTGTTGAACTTGTTGTTGATGCGGCTGGTGCGGTTGGCCAATGGGTGGTTCCGTTGCTGTAGATTTCACTGCTTGATTCATTACATTAGGTACTTGCGGAATTTGAGATTTGTCTGCCTGAGTTGAATAATTTGTATTCCGATTTTGAAAAAACCTGTTCGAGTAACCATGGGATGTCAAATTCTGAATTTTCTGAAGAACTTCTACCACTGGAGGTGGAGGTCCAGGCATCTTTGCATGTCTATATC</genome_strand>
        <mrna_strand>TTTATGATTCTAACAAGGCTCTAGATAAACAATTTACAGCTGACATGGACGACTCCAAATTATTCACCTATTTAAGTAGACTGACTGACTACATGACCTAAGTAAAGACCTTGAAACTCTGAACACACCTAGATGGTCCTTGAGGCAGGGGTATTGCAGCCTGATTTTGCTGGCTGCTGGGAAGGGTTTGTGTTTGAGTTGGGGCACCCTGATGTTGAGGCTGTTGAACTTGTTGTTGATGCTGTTGGTGCGGTTGGCCAATGGGTGGCTCTGCTGCTGTAGATTTCACTGCTTGATTCATTACATTAGGTACTTGCGGAATTTGAGATTTGTCTGCCTGAGTTGAATAATTTGTATTCCGATTTTGAAAAAACCTGTTTGAGTAACCATAGGATGTCAAATTCTGAATTCTCTGAAGAACTTCTACCACTGGAGGTGGAGGTCCAGGCAGCTTTGCATGTCTATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687949" ref_strand="+" ref_description="SGN-E687949 [T3_tus_81_M02]">
      <seq>gattgattgactacactaacagagaagaatcttctcaaaatggatgacggagaaggaggactaaactttgattttgaaggtggcttagatacagggccaacacacccaactgcatctgtaccagtaatacaagcaggtcccgccccaaatgcttctgttgccgtagttcctccaggcggcggtgtggggctaggaggtgatggttcatttgttggtaaccgtagaagtttcaggcagactgtttgtaggcattggctgcggtccttgtgtatgaagggtgatgcttgtggtttccttcaccagtatgataagtcccggatgcccgtttgcaggttctttagactctatggagagtgccgtgaacaagattgtgtttataagcacaccaatgaggatattaaagaatgtaacatgtttaaattaggattttgtccgaatggtcctgattgccgatatagacatgcaaagatgcctggacctccacctccagtggtagaagttcttcagaaaattcagaatttgacatcccatggttactcgaacaggttttttcaaaatcggaatacaaattattcaactcaggcagacaaatctcaaattccgcaagtacctaatgtaatgaatcaagcagtgaaatctacagcaacggaaccacccattggccaaccgcaccagccgcatcaacaacaagttcaacagcctcaacatcaggggcccccaactcanacacaaacccttcccggcacccagcanaatcaggctgcaatacccctgcctcaaggaccatctaggtgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="21119" stop="18915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20819" g_stop="20407" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20406" i_stop="19600" i_length="807">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19599" g_stop="19215" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="798" r_length="385" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E687949" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20819" e_stop="20407"/>
          <exon e_start="19599" e_stop="19215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACATGTGAGATTCTCTCAGTGATCTGATTTCTTCTTTGCAATGGTTTTAATTCATTGCTGTTTTACTTGTGTGTCCGTGTTTGTGTCTGTGTTGAAGGGGAGTGTAATGTAAATGGGAAACCACAGATGGATTCGAACTCTTACTTAGATACTCTGATGAGATAATTTTGGACTTATGTGTTCGGTGTCAGCAGTCAGCACCTCTGCTTGAATTTGGTTACATCTAAACCAAAATTACTAGCTTTTAGGTTTGTAAGTGTTAGGTTCGTAGATTTGATGCATTTTGAGTTGATTAGTTGCAATGAATTGGATCTACTCTATCTGTTTGAGATTTCTTGACTTGTATTTTTACTTATACCAGTTCCGTTTGAACTTTTTAGTTGTACACTGCATGAGCTTTTACTTACTGAGAATCAAGCAGAAGAAAAGCGCAAGAACATAGTAAAAAAATGGATGTTTGATGTTTTTTTCATGATCCTCACCTGATGTTTAGTTATGCTGATTTGCTTTTGTTGGGCGTTGGTCATTCTACGACAGTATCATCATTAATTACGGTGTAGGTGCTTTTGATCTTAATGATAATGACTGTTTAGAGTTGCATGATACCTGGTGGGAGGTAGTATGTACCCTATGGAAAAATTGAGGTTTTCAGTATTTGGCCCGTACAGCCCTGTCATAAAAAAGATCAAGAGTGTTGATTTGCTTTCTCTAAAGAAAAGTAATTGAAAAGAGAATAAGATGACCATACATGTTTTTTTTTTTTTGTAGCACATTATCACCTGTTTTTTTGATGTAATTTCTGAAATGGCAGGTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCAACATCAGGGGCCCCCAACTCAAACACAAACCCTTCCCGGCACCCAGCAAAATCAGGCTGCAATACCCCTGCCTCAAGGACCATCTAGGTGTGTT</genome_strand>
        <mrna_strand>GATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCAACATCAGGGGCCCCCAACTCANACACAAACCCTTCCCGGCACCCAGCANAATCAGGCTGCAATACCCCTGCCTCAAGGACCATCTAGGTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328180" ref_strand="+" ref_description="SGN-E328180 [cTOC-21-O19]">
      <seq>attgattgactacactaacagagaagaatcttctcaaaatggatgacggagaaggaggactaaactttgattttgaaggtggcttagatacagggccaacacacccaactgcatctgtaccagtaatacaagcaggtcccgccccaaatgcttctgttgccgtagttcctccaggcggcggtgtggggctaggaggtgatggttcatttgttggtaaccgtagaagtttcaggcagactgtttgtaggcattggctgcggtccttgtgtatgaagggtgatgcttgtggtttccttcaccagtatgataagtcccggatgcccgtttgcaggttctttagactctatggagagtgccgtgaacaagattgtgtttataagcacaccaatgaggatattaaagaatgtaacatgtttaaattaggattttgtccgaatggtcctgattgccgatatagacatgcaaagatgcctggacctccacctccagtggtagaagttcttcagaaaattcagaatttgacatcccatggttactcgaacaggttttttcaaaatcggaatacaaattattcaactcaggcagacaaatctcaaattccgcaagtacctaatgtaatgaatcaagcagtgaaatctacagcaacggaaccacccattggccaaccgcaccagccgcatcaacaacaagttcaacagcctcaacatcaggggcccccaactcaaacacaaaccctttccggcacccagcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="21118" stop="18957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20818" g_stop="20407" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20406" i_stop="19600" i_length="807">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19599" g_stop="19257" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="755" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E328180" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20818" e_stop="20407"/>
          <exon e_start="19599" e_stop="19257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACATGTGAGATTCTCTCAGTGATCTGATTTCTTCTTTGCAATGGTTTTAATTCATTGCTGTTTTACTTGTGTGTCCGTGTTTGTGTCTGTGTTGAAGGGGAGTGTAATGTAAATGGGAAACCACAGATGGATTCGAACTCTTACTTAGATACTCTGATGAGATAATTTTGGACTTATGTGTTCGGTGTCAGCAGTCAGCACCTCTGCTTGAATTTGGTTACATCTAAACCAAAATTACTAGCTTTTAGGTTTGTAAGTGTTAGGTTCGTAGATTTGATGCATTTTGAGTTGATTAGTTGCAATGAATTGGATCTACTCTATCTGTTTGAGATTTCTTGACTTGTATTTTTACTTATACCAGTTCCGTTTGAACTTTTTAGTTGTACACTGCATGAGCTTTTACTTACTGAGAATCAAGCAGAAGAAAAGCGCAAGAACATAGTAAAAAAATGGATGTTTGATGTTTTTTTCATGATCCTCACCTGATGTTTAGTTATGCTGATTTGCTTTTGTTGGGCGTTGGTCATTCTACGACAGTATCATCATTAATTACGGTGTAGGTGCTTTTGATCTTAATGATAATGACTGTTTAGAGTTGCATGATACCTGGTGGGAGGTAGTATGTACCCTATGGAAAAATTGAGGTTTTCAGTATTTGGCCCGTACAGCCCTGTCATAAAAAAGATCAAGAGTGTTGATTTGCTTTCTCTAAAGAAAAGTAATTGAAAAGAGAATAAGATGACCATACATGTTTTTTTTTTTTTGTAGCACATTATCACCTGTTTTTTTGATGTAATTTCTGAAATGGCAGGTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCAACATCAGGGGCCCCCAACTCAAACACAAACCCTTCCCGGCACCCAGCAAAAT</genome_strand>
        <mrna_strand>ATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCAACATCAGGGGCCCCCAACTCAAACACAAACCCTTTCCGGCACCCAGCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706258" ref_strand="+" ref_description="SGN-E706258 [FA29BH03]">
      <seq>aaacaaccaaaagccctgcccctgggttaggacttgaaaaaccttggtggctccataaaccccaaattcaaccagaaatcaagattgattgactacactaacagagaagaatcttctcaaaatggatgacggagaaggaggactaaactttgattttgaaggtggcttatatacagggccaacacacccaactgcatctgtaccagtaatacaagcaggtcccgccccaaatgcttctgttgccgtagttcctccaggcggcggtgtggggctaggaggtgatggttcatttgttggtaaccgtagaagtttcaggcagactgtttgtaggcattggctgcggtccttgtgtatgaagggtgatgcttgtggtttccttcaccagtatgataagtcccggatgcccgtttgcaggttctttagactctatggagagtgccgtgaacaagattgtgtttataagcacaccaatgaggatattaaagaatgtaacatgtttaaattaggattttgtccgaatggacctgattgccgatatagacatgcaaagatgcctggacctccacctccagtggtagaagttcttcagaaaattcagaatttgacatcccatggttactcgaacaggttttttcaaaatcggaatacaaattattcaactcaggcagacaaatctcaaattccgcaagtacctaatgtaatgaatcaagcagtgaaatctacagcaacggaaccacccattggccaaccgcaccagccgcatcaacaacaagttcaacagcctctacatcaggggccccccactcaaacacaaacccttcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="21201" stop="18971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20901" g_stop="20407" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20406" i_stop="19600" i_length="807">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19599" g_stop="19271" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="824" r_length="329" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E706258" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20901" e_stop="20407"/>
          <exon e_start="19599" e_stop="19271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACCAAAAGCCCTGCCCCTGGGTTAGGACTTGAAAAACCTTGGTGGCTCCATAAACCCCAAATTCAACCAGAAATCAAGATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACATGTGAGATTCTCTCAGTGATCTGATTTCTTCTTTGCAATGGTTTTAATTCATTGCTGTTTTACTTGTGTGTCCGTGTTTGTGTCTGTGTTGAAGGGGAGTGTAATGTAAATGGGAAACCACAGATGGATTCGAACTCTTACTTAGATACTCTGATGAGATAATTTTGGACTTATGTGTTCGGTGTCAGCAGTCAGCACCTCTGCTTGAATTTGGTTACATCTAAACCAAAATTACTAGCTTTTAGGTTTGTAAGTGTTAGGTTCGTAGATTTGATGCATTTTGAGTTGATTAGTTGCAATGAATTGGATCTACTCTATCTGTTTGAGATTTCTTGACTTGTATTTTTACTTATACCAGTTCCGTTTGAACTTTTTAGTTGTACACTGCATGAGCTTTTACTTACTGAGAATCAAGCAGAAGAAAAGCGCAAGAACATAGTAAAAAAATGGATGTTTGATGTTTTTTTCATGATCCTCACCTGATGTTTAGTTATGCTGATTTGCTTTTGTTGGGCGTTGGTCATTCTACGACAGTATCATCATTAATTACGGTGTAGGTGCTTTTGATCTTAATGATAATGACTGTTTAGAGTTGCATGATACCTGGTGGGAGGTAGTATGTACCCTATGGAAAAATTGAGGTTTTCAGTATTTGGCCCGTACAGCCCTGTCATAAAAAAGATCAAGAGTGTTGATTTGCTTTCTCTAAAGAAAAGTAATTGAAAAGAGAATAAGATGACCATACATGTTTTTTTTTTTTTGTAGCACATTATCACCTGTTTTTTTGATGTAATTTCTGAAATGGCAGGTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCAACATCAGGGGCCCCCAACTCAAACACAAACCCTTCCCG</genome_strand>
        <mrna_strand>AAACAACCAAAAGCCCTGCCCCTGGGTTAGGACTTGAAAAACCTTGGTGGCTCCATAAACCCCAAATTCAACCAGAAATCAAGATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTATATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAATTAGGATTTTGTCCGAATGGACCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCTACATCAGGGGCCCCCCACTCAAACACAAACCCTTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727693" ref_strand="+" ref_description="SGN-E727693 [LA15BH06]">
      <seq>atcactgagtgcactcgaagagagggggattccaaaattagatttgttcacgcaatatatcaggaccggaccggaccggaccggcattaccacgaaaaaggaattccggcgacatcacggtgctgattcaatggcgaatcacgtagctgaggaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgctgcctcggtatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggcatcaaagtctattacaacgttgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccatcaggaaagctgtgtctgcaggaatgtatgccctccccacccggcaacagctgatgatcaagcttaatgaagatgaagactccgcaagaacgcagatgcaaaattatgtcgcctcgtgtgatactgtcattttgtacattgacaaactcttcacgtcaagagatttgggtactgattggtgaccatgaagaactggatgtcataatgctcattcattcatgtgattcgcccctaatcacttatatgtataatcatttgacgcagtggtcccaatatttgattgtaactaacttatcttaacctaacagggaatgaaaaaatgccctaaaacagaaaactatctatctgcccttggggcgacgttgagctctttattttttaaaaaaaaaaaaattaatacacttcaccttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28206" stop="22555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27906" g_stop="27570" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26764" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="508" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26763" i_stop="24073" i_length="2691">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24072" g_stop="23927" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="654" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23926" i_stop="23192" i_length="735">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23191" g_stop="22847" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="999" r_length="345" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E727693" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>1001</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27906" e_stop="27570"/>
          <exon e_start="26936" e_stop="26764"/>
          <exon e_start="24072" e_stop="23927"/>
          <exon e_start="23191" e_stop="22847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACTCAAATTCTAGGACATTGTAATCCTTATTGTAGTAGCTTCCTCCTATATACTATGACACGAAACACAGTATCAGTTTTTTTAGTTTGCCTCTCTTATCACACACTTGGGAAGGACTTCATGACACAACACTGAAATTTTATATCCTGCTTGTTTCTTTACTTATTTGATTTTAGCTTCCAAGTTGTTGGGTAAGGAAGGTCAGAACTGAATTTGCACTTTGTTTTGTCCAGGGAATAAATTGTGCGTTTTATAGTGACTAATTTATCTGTATGCTGACAAGCTCTTCTTAATAGTTGTTCATCTCATTCTATCTCAGCCTAGATGATAGTTGCCTTTTTATTGGCCAGAATATCCAACGCCAGAGGCATTTTCATAGTTCATGACCCATCCTTGTCCAAGGCTTAGATCATATCTAATACCTTGTAGTCCATGTGCTAAGATTTGAGATACTAGGTCCGCCCACCTGTTCCACTAGTTTTTTTTTTAAAAAAAAAATTCTGATGAGTATGTTGTTTCTCTCTGTTAATTTCAGAAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAA-CTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTAAAAAAAAAGAAAATATACCACTTCAGCTTGACTCGAGTG</genome_strand>
        <mrna_strand>ATCACTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGG--ATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCCAATATTTGATTGTAACTAACTTATCTTAACCTAACAGGG-AATGAAAAAATGCCCTAAAACAGAAAACTATCTATCTGCCCTTGGGGCGACGTTGAGCTCTTTATTTTTTAAAAAAAAAAAAATTAATACACTTCACCTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234047" ref_strand="+" ref_description="SGN-E234047 [cLEL-8-J4](-)">
      <seq>aagcttaatgaagatgaagactccgcaagaacgcagatgcaaaattatgtcgcctcgtgtgatactgtcattttgtacattgacaaactcttcacgtcaagagatttgggtactgattggtgaccatgaagaactggatgtcataatgcccattcattcatgtgattcgcccctaatcacttatatgtataatcatttgacgcagtggtccaaatatttgattgtaactaacttatcttaactagcagggaaatgaaaaaatgccctagaacagaaaactatctatctgcacttggggcgacgttgagctcattattttttttaaaaaaagaaaatataccacttcagcttgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="24242" stop="22555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23942" g_stop="23927" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23926" i_stop="23192" i_length="735">
            <donor d_prob="0.914" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23191" g_stop="22855" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="353" r_length="337" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="354" polyA_stop="373"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E234047" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23942" e_stop="23927"/>
          <exon e_start="23191" e_stop="22855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACTCAAATTCTAGGACATTGTAATCCTTATTGTAGTAGCTTCCTCCTATATACTATGACACGAAACACAGTATCAGTTTTTTTAGTTTGCCTCTCTTATCACACACTTGGGAAGGACTTCATGACACAACACTGAAATTTTATATCCTGCTTGTTTCTTTACTTATTTGATTTTAGCTTCCAAGTTGTTGGGTAAGGAAGGTCAGAACTGAATTTGCACTTTGTTTTGTCCAGGGAATAAATTGTGCGTTTTATAGTGACTAATTTATCTGTATGCTGACAAGCTCTTCTTAATAGTTGTTCATCTCATTCTATCTCAGCCTAGATGATAGTTGCCTTTTTATTGGCCAGAATATCCAACGCCAGAGGCATTTTCATAGTTCATGACCCATCCTTGTCCAAGGCTTAGATCATATCTAATACCTTGTAGTCCATGTGCTAAGATTTGAGATACTAGGTCCGCCCACCTGTTCCACTAGTTTTTTTTTTAAAAAAAAAATTCTGATGAGTATGTTGTTTCTCTCTGTTAATTTCAGAAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTAAAAAAAAAGAAAATATACCACTTCAGCTTGA</genome_strand>
        <mrna_strand>AAGCTTAATGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCCCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTTTAAAAAAAGAAAATATACCACTTCAGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309118" ref_strand="+" ref_description="SGN-E309118 [cLEZ-1-G11](-)">
      <seq>ggaacttgttaagagttaagcgtgggctggatatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccatcaggaaagctgtgtctgcaggaatgtatgccctccccacccggcaacaggtgatgatcaagcttaatgaagatgaagactccgcaagaacgcagatgcaaaattatgtcgcctcgtgtgatactgtcattttgtacattgacaaactcttcacgtcaagagatttgggtactgattggtgaccatgaagaactggatgtcataatgcccattcattcatgtgattcgcccctaatcacttatatgtataatcatttgacgcagtggtccaaatatttgattgtaactaacttatcttaactagcagggaaatgaaaaaatgccctagaacagaaaactatctatctgcacttggggcgacgttgagctcattattttttttaaaaaaagaaaatataccacttcagcttgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="27133" stop="22556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26833" g_stop="26764" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26763" i_stop="24073" i_length="2691">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24072" g_stop="23927" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="216" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23926" i_stop="23192" i_length="735">
            <donor d_prob="0.914" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23191" g_stop="22856" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="552" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="569"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E309118" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26833" e_stop="26764"/>
          <exon e_start="24072" e_stop="23927"/>
          <exon e_start="23191" e_stop="22856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACTCAAATTCTAGGACATTGTAATCCTTATTGTAGTAGCTTCCTCCTATATACTATGACACGAAACACAGTATCAGTTTTTTTAGTTTGCCTCTCTTATCACACACTTGGGAAGGACTTCATGACACAACACTGAAATTTTATATCCTGCTTGTTTCTTTACTTATTTGATTTTAGCTTCCAAGTTGTTGGGTAAGGAAGGTCAGAACTGAATTTGCACTTTGTTTTGTCCAGGGAATAAATTGTGCGTTTTATAGTGACTAATTTATCTGTATGCTGACAAGCTCTTCTTAATAGTTGTTCATCTCATTCTATCTCAGCCTAGATGATAGTTGCCTTTTTATTGGCCAGAATATCCAACGCCAGAGGCATTTTCATAGTTCATGACCCATCCTTGTCCAAGGCTTAGATCATATCTAATACCTTGTAGTCCATGTGCTAAGATTTGAGATACTAGGTCCGCCCACCTGTTCCACTAGTTTTTTTTTTAAAAAAAAAATTCTGATGAGTATGTTGTTTCTCTCTGTTAATTTCAGAAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTAAAAAAAAAGAAAATATACCACTTCAGCTTG</genome_strand>
        <mrna_strand>GGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGGTGATGATCAAGCTTAATGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCCCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTTTAAAAAAAGAAAATATACCACTTCAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234292" ref_strand="+" ref_description="SGN-E234292 [cLEL-8-J4](-)">
      <seq>tcaagcttaatgaagatgaagactccgcaagaacgcagatgcaaaattatgtcgcctcgtgtgatactgtcattttgtacattgacaaactcttcacgtcaaaagatttgggtactgattggtggccatgaagaactggatgtcataatgcccattcattcatgtgattcgcccctaatcacttatatgtataatcatttgacgcagtggtccaaatatttgattgtaactaacttatcttaactagcagggaaatgaaaaaatgccctagaacagaaaactatctatctgcacttggggcgacgttgagctcattattttttttaaaaaaagaaaatataccacttcagcttgcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="24244" stop="22556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23944" g_stop="23927" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23926" i_stop="23192" i_length="735">
            <donor d_prob="0.914" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23191" g_stop="22856" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="354" r_length="336" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="375"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E234292" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23944" e_stop="23927"/>
          <exon e_start="23191" e_stop="22856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACTCAAATTCTAGGACATTGTAATCCTTATTGTAGTAGCTTCCTCCTATATACTATGACACGAAACACAGTATCAGTTTTTTTAGTTTGCCTCTCTTATCACACACTTGGGAAGGACTTCATGACACAACACTGAAATTTTATATCCTGCTTGTTTCTTTACTTATTTGATTTTAGCTTCCAAGTTGTTGGGTAAGGAAGGTCAGAACTGAATTTGCACTTTGTTTTGTCCAGGGAATAAATTGTGCGTTTTATAGTGACTAATTTATCTGTATGCTGACAAGCTCTTCTTAATAGTTGTTCATCTCATTCTATCTCAGCCTAGATGATAGTTGCCTTTTTATTGGCCAGAATATCCAACGCCAGAGGCATTTTCATAGTTCATGACCCATCCTTGTCCAAGGCTTAGATCATATCTAATACCTTGTAGTCCATGTGCTAAGATTTGAGATACTAGGTCCGCCCACCTGTTCCACTAGTTTTTTTTTTAAAAAAAAAATTCTGATGAGTATGTTGTTTCTCTCTGTTAATTTCAGAAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTAAAAAAAAAGAAAATATACCACTTCAGCTTG</genome_strand>
        <mrna_strand>TCAAGCTTAATGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAAAGATTTGGGTACTGATTGGTGGCCATGAAGAACTGGATGTCATAATGCCCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTTTAAAAAAAGAAAATATACCACTTCAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727769" ref_strand="+" ref_description="SGN-E727769 [LA15CG06]">
      <seq>atcaaaatcactgagtgcactcgaagagagggggattccaaaattagatttgttcacgcaatatatcaggaccggaccggaccggaccggcattaccacgaaaaaggaattccggcgacatcacggtgctgattcaatggcgaatcacgtagctgaggaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgctgcctcggtatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggcatcaaagtctattacaacgttgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccatcaggaaagctgtgtctgcaggaatgtatgccctccccacccggcaacagctgatgatcaagcttaatgaagatgaagactccgcaagaacgcagatgcaaaattatgtcgcctcgtgtgatactgtcattttgtacattgacaaactcttcacgtcaagagatttgggtactgattggtgaccatgaagaactggatgtcataatgctcattcattcatgtgattcgccccctatcacttatatgtataatcatttgacgcagtggtccaaatatttgattgtaactaacttatcttaactagcagggaaatgaaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28212" stop="22645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27912" g_stop="27570" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26764" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="516" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26763" i_stop="24073" i_length="2691">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24072" g_stop="23927" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="662" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23926" i_stop="23192" i_length="735">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23191" g_stop="22945" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="909" r_length="247" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E727769" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27912" e_stop="27570"/>
          <exon e_start="26936" e_stop="26764"/>
          <exon e_start="24072" e_stop="23927"/>
          <exon e_start="23191" e_stop="22945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAATCACTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACTCAAATTCTAGGACATTGTAATCCTTATTGTAGTAGCTTCCTCCTATATACTATGACACGAAACACAGTATCAGTTTTTTTAGTTTGCCTCTCTTATCACACACTTGGGAAGGACTTCATGACACAACACTGAAATTTTATATCCTGCTTGTTTCTTTACTTATTTGATTTTAGCTTCCAAGTTGTTGGGTAAGGAAGGTCAGAACTGAATTTGCACTTTGTTTTGTCCAGGGAATAAATTGTGCGTTTTATAGTGACTAATTTATCTGTATGCTGACAAGCTCTTCTTAATAGTTGTTCATCTCATTCTATCTCAGCCTAGATGATAGTTGCCTTTTTATTGGCCAGAATATCCAACGCCAGAGGCATTTTCATAGTTCATGACCCATCCTTGTCCAAGGCTTAGATCATATCTAATACCTTGTAGTCCATGTGCTAAGATTTGAGATACTAGGTCCGCCCACCTGTTCCACTAGTTTTTTTTTTAAAAAAAAAATTCTGATGAGTATGTTGTTTCTCTCTGTTAATTTCAGAAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATG</genome_strand>
        <mrna_strand>ATCAAAATCACTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCCTATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444964" ref_strand="+" ref_description="SGN-E444964 [cSTA-44-I24]">
      <seq>ccggaccggcattaccaggaaaaaaaactccggcgacatcacggtgctgattcaatggcgaatcacgcagctgaggagaagcctcttaggaaaatggcggaagccttcaaagacctagccaacactttgaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgcactttggtctctcctctattccgttgcctcggtatcgccttcaagtttgccgagctagattacgttgctaaggtgggtgatctagcagatgcatcaaagtctattacaacgttgcacactatgatggatcaagatattcaagcaaactgtgtgaggaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggttttgttcgaggagattatagccgcagaggggaattccttgaaggatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccatcaggaaagctgtgtctgcaggaatgtatgcccttcccacccggcaacagctgatgatcaaacttaatgaagatgaagactctgcaagaacgcagatgcaaaattatgtcgcctcgtgtgagactgtcatttcgtacattgacaaactcttcacctcaagagattttggtattgattggtgaccatgaagaactggatgacagaacgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28131" stop="22759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27831" g_stop="27570" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26764" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="434" r_length="173" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26763" i_stop="24073" i_length="2691">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24072" g_stop="23927" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="580" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23926" i_stop="23192" i_length="735">
            <donor d_prob="0.914" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23191" g_stop="23058" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="714" r_length="134" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E444964" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27831" e_stop="27570"/>
          <exon e_start="26936" e_stop="26764"/>
          <exon e_start="24072" e_stop="23927"/>
          <exon e_start="23191" e_stop="23058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACTCAAATTCTAGGACATTGTAATCCTTATTGTAGTAGCTTCCTCCTATATACTATGACACGAAACACAGTATCAGTTTTTTTAGTTTGCCTCTCTTATCACACACTTGGGAAGGACTTCATGACACAACACTGAAATTTTATATCCTGCTTGTTTCTTTACTTATTTGATTTTAGCTTCCAAGTTGTTGGGTAAGGAAGGTCAGAACTGAATTTGCACTTTGTTTTGTCCAGGGAATAAATTGTGCGTTTTATAGTGACTAATTTATCTGTATGCTGACAAGCTCTTCTTAATAGTTGTTCATCTCATTCTATCTCAGCCTAGATGATAGTTGCCTTTTTATTGGCCAGAATATCCAACGCCAGAGGCATTTTCATAGTTCATGACCCATCCTTGTCCAAGGCTTAGATCATATCTAATACCTTGTAGTCCATGTGCTAAGATTTGAGATACTAGGTCCGCCCACCTGTTCCACTAGTTTTTTTTTTAAAAAAAAAATTCTGATGAGTATGTTGTTTCTCTCTGTTAATTTCAGAAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCT</genome_strand>
        <mrna_strand>CCGGACCGGCATTACCAGGAAAAA-AAACTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGCAGCTGAGGAGAAGCCTCTTAGGAAAATGGCGGAAGCCTTCAAAGACCTAGCCAACACTTTGAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGCACTTTGGTCTCTCCTCTATTCCGTTGCCTCGGTATCGCCTTCAAGTTTGCCGAGCTAGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGATCTAGCAGATGCATCAAAGTCTATTACAACGTTGCACACTATGATGGATCAAGATATTCAAGCAAACTGTGTGAGGAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTTTTGTTCGAGGAGATTATAGCCGCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAGGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTTCCCACCCGGCAACAGCTGATGATCAAACTTAATGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTCTGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGAGACTGTCATTTCGTACATTGACAAACTCTTCACCTCAAGAGATTTTGGTATTGATTGGTGACCATGAAGAACTGGATGACAGAACGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444817" ref_strand="+" ref_description="SGN-E444817 [cSTA-44-I19]">
      <seq>ccggaccggcattaccaggaaaaaaaactccggcgacatcacggtgctgattcaatggcgaatcacgcagctgaggagaagcctcttaggaaaatggcggaagccttcaaagacctagccaacactttgaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgcactttggtctctcctctattccgttgcctcggtatcgccttcaagtttgccgagctagattacgttgctaaggtgggtgatctagcagatgcatcaaagtctattacaacgttgcacactatgatggatcaagatattcaagcaaactgtgtgaggaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggttttgttcgaggagattatagccgcagaggggaattccttgaaggatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccatcaggaaagctgtgtctgcaggaatgtatgcccttcccacccggcaacagctgatgatcaaacttaatgaagatgaagactctgcaagaacgcagatgcaaaattatgtcgccctcgtgtgagactgtcatttcgtacattgacaaactcttcacctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28131" stop="22809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27831" g_stop="27570" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26764" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="434" r_length="173" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26763" i_stop="24073" i_length="2691">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24072" g_stop="23927" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="580" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23926" i_stop="23192" i_length="735">
            <donor d_prob="0.914" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23191" g_stop="23109" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="664" r_length="84" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E444817" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27831" e_stop="27570"/>
          <exon e_start="26936" e_stop="26764"/>
          <exon e_start="24072" e_stop="23927"/>
          <exon e_start="23191" e_stop="23109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACTCAAATTCTAGGACATTGTAATCCTTATTGTAGTAGCTTCCTCCTATATACTATGACACGAAACACAGTATCAGTTTTTTTAGTTTGCCTCTCTTATCACACACTTGGGAAGGACTTCATGACACAACACTGAAATTTTATATCCTGCTTGTTTCTTTACTTATTTGATTTTAGCTTCCAAGTTGTTGGGTAAGGAAGGTCAGAACTGAATTTGCACTTTGTTTTGTCCAGGGAATAAATTGTGCGTTTTATAGTGACTAATTTATCTGTATGCTGACAAGCTCTTCTTAATAGTTGTTCATCTCATTCTATCTCAGCCTAGATGATAGTTGCCTTTTTATTGGCCAGAATATCCAACGCCAGAGGCATTTTCATAGTTCATGACCCATCCTTGTCCAAGGCTTAGATCATATCTAATACCTTGTAGTCCATGTGCTAAGATTTGAGATACTAGGTCCGCCCACCTGTTCCACTAGTTTTTTTTTTAAAAAAAAAATTCTGATGAGTATGTTGTTTCTCTCTGTTAATTTCAGAAGACTCCGCAAGAACGCAGATGCAAAATTATGTCG-CCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCA</genome_strand>
        <mrna_strand>CCGGACCGGCATTACCAGGAAAAA-AAACTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGCAGCTGAGGAGAAGCCTCTTAGGAAAATGGCGGAAGCCTTCAAAGACCTAGCCAACACTTTGAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGCACTTTGGTCTCTCCTCTATTCCGTTGCCTCGGTATCGCCTTCAAGTTTGCCGAGCTAGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGATCTAGCAGATGCATCAAAGTCTATTACAACGTTGCACACTATGATGGATCAAGATATTCAAGCAAACTGTGTGAGGAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTTTTGTTCGAGGAGATTATAGCCGCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAGGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTTCCCACCCGGCAACAGCTGATGATCAAACTTAATGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTCTGCAAGAACGCAGATGCAAAATTATGTCGCCCTCGTGTGAGACTGTCATTTCGTACATTGACAAACTCTTCACCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237669" ref_strand="+" ref_description="SGN-E237669 [cLED-19-I16]">
      <seq>gaccacaggtgaatgatctagcagaggcatcaaagtctattacaacgttgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccatcaggaaagctgtgtctgcaggaatgtatgccctccccacccggcaacagctgatgatcaagcttaatgaagatggtgagtatgcagttcagcttctttactatacctctgactcaactaacaactcacctagtaacatttttagtctaatgcatcgttctgatacattatttttttattctgaagtgaacttggtttggctttatccaatctgttgagtaatttggtaaaattcttaatgacacaatttgttttgggctaaaaatgaattatgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="27244" stop="23424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26944" g_stop="26764" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26763" i_stop="24073" i_length="2691">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24072" g_stop="23724" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="530" r_length="349" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E237669" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26944" e_stop="26764"/>
          <exon e_start="24072" e_stop="23724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACT</genome_strand>
        <mrna_strand>GACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAACAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619863" ref_strand="+" ref_description="SGN-E619863 [70558]">
      <seq>ggtgctgattcaatggcgaatcacgcagctgaggagaagcctcttaggaaaatggcggaagccttcaaagacctagccaacactttgaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgcactttggtctctcctctattccgttgcctcggtatcgccttcaagtttgccgagctagattacgttgctaaggtgggtgatctagcagatgcatcaaagtctattacaacgttgcacactatgatggatcaagatattcaagcaaactgtgtgaggaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggttttgttcgaggagattatagccgcagaggggaattccttgaaggatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccatcaggaaagctgtgtctgcaggaatgtatgcccttcccacccggcaacagctgatgatcaaacttaatgaagatgaagactctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28088" stop="23617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27788" g_stop="27570" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26764" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="392" r_length="173" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26763" i_stop="24073" i_length="2691">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24072" g_stop="23927" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="538" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E619863" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27788" e_stop="27570"/>
          <exon e_start="26936" e_stop="26764"/>
          <exon e_start="24072" e_stop="23927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATG</genome_strand>
        <mrna_strand>GGTGCTGATTCAATGGCGAATCACGCAGCTGAGGAGAAGCCTCTTAGGAAAATGGCGGAAGCCTTCAAAGACCTAGCCAACACTTTGAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGCACTTTGGTCTCTCCTCTATTCCGTTGCCTCGGTATCGCCTTCAAGTTTGCCGAGCTAGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGATCTAGCAGATGCATCAAAGTCTATTACAACGTTGCACACTATGATGGATCAAGATATTCAAGCAAACTGTGTGAGGAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTTTTGTTCGAGGAGATTATAGCCGCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAGGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTTCCCACCCGGCAACAGCTGATGATCAAACTTAATGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309117" ref_strand="+" ref_description="SGN-E309117 [cLEZ-1-G11]">
      <seq>ctgagtgcactcgaagagagggggattccaaaattagatttgttcacgcaatatatcaggaccggaccggaccggcattaccacggaaaaggaattccggcgacatcacggtgctgattcaatggcgaatcacgtagctgaggaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgcgaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgctgcctcggtatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggcatcaaagtctattacaacgttgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccatcaggaaagctgtgtctgcaggaatgtatgccctccccacccggcaacagctgatgatcaagcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28202" stop="23634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27902" g_stop="27570" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26764" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="501" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26763" i_stop="24073" i_length="2691">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24072" g_stop="23934" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="640" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E309117" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27902" e_stop="27570"/>
          <exon e_start="26936" e_stop="26764"/>
          <exon e_start="24072" e_stop="23934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAAT</genome_strand>
        <mrna_strand>CTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGG--C---ATTACCACGGAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCGAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365278" ref_strand="+" ref_description="SGN-E365278 [cLPT-2-C21]">
      <seq>tgattcaatggcgaatcacgtagctgaggaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgttgcctcggtatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggtatcaaagtctattacaacattgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggatgggccattangaaagctgtgtctgcaggactgtatgcccttcccacccggcaacagctgatgatcaagcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28083" stop="23634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27783" g_stop="27570" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26764" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="387" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26763" i_stop="24073" i_length="2691">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24072" g_stop="23934" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="526" r_length="139" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E365278" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27783" e_stop="27570"/>
          <exon e_start="26936" e_stop="26764"/>
          <exon e_start="24072" e_stop="23934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAAT</genome_strand>
        <mrna_strand>TGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGTTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGTATCAAAGTCTATTACAACATTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATTANGAAAGCTGTGTCTGCAGGACTGTATGCCCTTCCCACCCGGCAACAGCTGATGATCAAGCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440430" ref_strand="+" ref_description="SGN-E440430 [cSTA-16-P17]">
      <seq>gaattagatttgttcacgcaatatatcttgggcccggaccggcattaccaggaaaaaaaactccggcgacatcacggtgctgattcaatggcgaatcacgcagctgaggagaagcctcttaggaaaatggcggaagccttcaaagacctagccaacactttgaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgcactttggtctctcctctattccgttgcctcggtatcgccttcaagtttgccgagctagattacgttgctaaggtgggtgatctagcagatgcatcaaagtctattacaacgttgcacactatgatggatcaagatattcaagcaaactgtgtgaggaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggttttgttcgaagagattatagccgcagaggggaattccttgaaggatccagcatcaaaagcatatacacaagtgtttgctccataccatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28171" stop="23708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27872" g_stop="27570" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26764" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="467" r_length="173" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26763" i_stop="24073" i_length="2691">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24072" g_stop="24008" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="532" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E440430" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27872" e_stop="27570"/>
          <exon e_start="26936" e_stop="26764"/>
          <exon e_start="24072" e_stop="24008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGAT</genome_strand>
        <mrna_strand>GAATTAGATTTGTTCACGCAATATATCTTG---GG--C---CCGGACCGGCATTACCAGGAAAAA-AAACTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGCAGCTGAGGAGAAGCCTCTTAGGAAAATGGCGGAAGCCTTCAAAGACCTAGCCAACACTTTGAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGCACTTTGGTCTCTCCTCTATTCCGTTGCCTCGGTATCGCCTTCAAGTTTGCCGAGCTAGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGATCTAGCAGATGCATCAAAGTCTATTACAACGTTGCACACTATGATGGATCAAGATATTCAAGCAAACTGTGTGAGGAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTTTTGTTCGAAGAGATTATAGCCGCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAGGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273674" ref_strand="+" ref_description="SGN-E273674 [cLEN-6-D22]">
      <seq>aattccggcgacatcacggtgctgattcaatggcgaatcacgtagctgaggaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgcgaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgctgcctcggtatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggcatcaaagtctattacaacgttgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatggttaaggtgttgttcgaggagattatagcctcagaggggaattccttgaaagatccagcatcaaaagcatatacacaagtgtttgctccataccatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28105" stop="23708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27805" g_stop="27570" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26764" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="409" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26763" i_stop="24073" i_length="2691">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24072" g_stop="24008" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="474" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E273674" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27805" e_stop="27570"/>
          <exon e_start="26936" e_stop="26764"/>
          <exon e_start="24072" e_stop="24008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGAGTATGCTTTTTATCTGTTCCCTCTATTATTTAACATTTCTGTTTTACTATTTTGAAATGTAGAACTCTGAAATCATTTAGATGCACAACTTCATCTTTACCAGTATTTAAAAGCGTAAAAGTAAAAAACTACATGGGGTTTTTGGCGAAAAGCGAGAAGTGAACCATATGTTTCTTTGAAGTGAAGCGTACATATTATAGTAAGTTTAAATGATAAATTGAGATAAACATGTATAATTTAGTCTTAAATAATCAAATTATGATTAAAATAGCCAGTTTTTGCATCCAATTTACAATGATGCTAATATAGATCAAACTTCTCAAAAGAGCCATTCACATAATCAACTGCTCCTCCTTAGGATCGTGTTGCTCACCATTGTCTGAAGTTTACATTTGTGTGAAGCTCGATAGTCCCTCTTCATTTGCTTCATTGCTTTAAGCGATTGGTTTTACTAACACTGACCCTAACACTCATGTAATGAGCAAGTTCCTCAACTTCAGTGTTTCTATCTTTTTTGTCAACATCACTGCTTGATGTTGTAAGCTTTATCCTCTAGTTCAGGCTTACAGACTCATGGAATTCTAAGTTAACCAGCATTTCATCAAAGAATACCAATAGCATGAAAGCTCTAGTCTCAGATCTGTTGTAACAGAGTGAAGAAAAAGCTACTACTTTTGACAGTTCTTTTTTCTCTTGTTGATAAGGAGCTATAACTTTTGATGTTTATTTTATGGAACGAAAGAAGGACCCAAAAATGAGTAGATTGGAAATAGTATTTCATTGTGAGGGACTCCAGAACTTCCAATGTTAGCTAATTAAAAAAAGAACTAACATTTTTGGCTTTCATTTATTTGCAAAGTAGTATAGACCTATAGACATAAGCTTTGAAACTTGGAGTACAAAAAAGCAAAAGAACAAGAGATTGTGGTGGCATATATAAGATTATTTCTTTTTGTCCATAGCCTAAACTATAAGATAAAGGAAAATAATATCATTAATAACAAAGAGAAAGATATGCCATAACAATGGCGTTTTCCAGCATCACTAACATATTCCTTGACAGAGTTGTTGGGTGAAGAGGGAGGAACAGAGGGTTCGACAAGCTTCTCACTGGCGAGCTGTCTGAGTTAACCCAAAGGTAGTGTTAGAATCCCACGCTAGAAAGGAAAGCTGAAGGTCCTGAACTGTAAGAGTAAGACTTGAAACCAGCTTGTGCAATGCCTTTTTGGGCTTAGCGATGAGTATATTGTGTTACTGGGCTGTTACTGTATGGGTTCCTGGACGTTGGCTTTCTTTTCTATAACGAATTAAAAGTAAGCTTTGCTCATTGATGATGAGTTGGAAGGAGTGAAATCAGAAGATATTTTGTCCTATATGTGTCTACATTAGAAAACTTTATATGTTTGGCCCTTAAAGTATTGAATTAAAAAGAAAAGTTTGGTTATTACAATTTACAAAATACAAAATAAAGTGCCTTCTTTATGTCCAGATGATTGGTATCTCTAGTACATATTGAGGACAGAAATTGGAGAGTGACAGATCTGGTTATGTGTTCCACAAGAGTTTAGGCATGCTCCAATTCATGTTCATGGGCATTTCCTTATTTGATCTTTTTGGGTGTTCAAGACCAAAGTGTGACAGATTCTGTATTCCATTTCTGTACAAAATATCTTAATTCTCCAAGTAATGCTTGTGCTTAAAGTATGATATCTCTCTCTACTTGAAATTGTTTGGTCATGTAACGTTATGCTCAACGGACATAATGGGTAAAGTCTTTGTAGTTATTAATAGAAAACAAAGGAACATTTGATTGGATCTTGGAAGCTGTAAGGTGTATTAAATTTGACAGCTTGTATACATCAGTGTGCCAGAAGGCAAGGGGTCATAGACTTTGGTGCTATGGTGTACATGGAAAATCTGGTTTTTTGACCAGTTTTCTAGCTTGTTGGTGTAATGGTTCTAGAAGCATGAGGGCCTTTGAAGATCACAGTGGAAATAGTAGACCGAAGGAACTTATTAATACCTAGTTTTCCTGCCAAGGAAGCAATAATTTGTTGTTTCAATGGAGGAAGGAGATGAATAAGACTAGAGAGATGGGTTTGGGGATTTAGTTTGGTATGAATTTATTTGATTTAGTGGGTTGGGTTCAGATTCAGAAAAATCGGGTCATTTTAATTGAAATGAGCAATTTTAGTTGACTTGGGGCTTTCTATCCAATTAAGGGGTACAAATGATAAGTTTGTAGACGGTGAGGGTAAGAATAACTTCATTTTAACGGTAAGAGCATAGTCAACTAATAAACCAAAGTTGAAGGGGGTAGTTTTGATCCTTTTTCCTTAATTTTAAGGTGCGTGGAAGTCGCATAATCTTGTGGAGTTCTATCATTATCTGCAAGTCAATTGTTGTTTGGCACGGTGGTGATATTCACATGAACCTGTCCTTCTGGTGGCTGGATTGGCAATAGATGGATATGAGTTATGACTCAAACACTTTGCTTGCTTGTTCATTCTTTTTAGGTGTGTGGAAGTAGGAAAATATCTTGAAATGTTGTTGTAGTACTATGAGATTTGTAGTATTTGTATATTATGTTTGCTATCAGTTAGTAACTGATAGCAAACACTTTAGCGGGTACGTTTGTTTTAGTTTTAATATTTATATTTGATGTTCAAATTTGGTTGCTGTCTTTGGCAGGGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGAT</genome_strand>
        <mrna_strand>AATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCGAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365330" ref_strand="+" ref_description="SGN-E365330 [cLPT-2-D19]">
      <seq>cggaccggaccggcatttaccacgaaaaagaaattccggcgacatcacggtgctgattcaatggcgaatcacgtagctgaggaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgttgcctcggtatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggtatcaaagtctattacaacattgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28135" stop="26499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27835" g_stop="27570" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26799" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="405" r_length="138" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E365330" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27835" e_stop="27570"/>
          <exon e_start="26936" e_stop="26799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACCGGACCGGCATT-ACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATG</genome_strand>
        <mrna_strand>CGGACCGGACCGGCATTTACCACGAAAAAGAAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGTTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGTATCAAAGTCTATTACAACATTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445458" ref_strand="+" ref_description="SGN-E445458 [cSTA-45-H15]">
      <seq>ggcattaccaggaaaaaaaactccggcgacatcacggtgctgattcaatggcgaatcacgcagctgaggagaagcctcttaggaaaatggcggaagccttcaaagacctagccaacactttgaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgcactttggtctctcctctattccgttgcctcggtatcgccttcaagtttgccgagctagattacgttgctaaggtgggtgatctagcagatgcatcaaagtctattacaacgttgcacactatgatggatcaagatattcaagcaaactgtgtgaggaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28124" stop="26500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27824" g_stop="27570" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26800" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="391" r_length="137" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E445458" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27824" e_stop="27570"/>
          <exon e_start="26936" e_stop="26800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATAT</genome_strand>
        <mrna_strand>GGCATTACCAGGAAAAA-AAACTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGCAGCTGAGGAGAAGCCTCTTAGGAAAATGGCGGAAGCCTTCAAAGACCTAGCCAACACTTTGAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGCACTTTGGTCTCTCCTCTATTCCGTTGCCTCGGTATCGCCTTCAAGTTTGCCGAGCTAGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGATCTAGCAGATGCATCAAAGTCTATTACAACGTTGCACACTATGATGGATCAAGATATTCAAGCAAACTGTGTGAGGAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440193" ref_strand="+" ref_description="SGN-E440193 [cSTA-15-J6]">
      <seq>ccggaccggcattaccaggaaaaaaaactccggcgacatcacggtgctgattcaatggcgaatcacgcagctgaggagaagcctcttaggaaaatggcggaagccttcaaagacctagccaacactttgaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgcactttggtctctcctctattccgttgcctcggtatcgccttcaagtttgccgagctagattacgttgctaaggtgggtgatctagcagatgcatcaaagtctattacaacgttgcacactatgatggatcaagatattcaagcaaactgtgtgaggaaggcaggtagtcatacaaggaacttgttaagagttaagcgtgggctggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28131" stop="26501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27831" g_stop="27570" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26801" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="397" r_length="136" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E440193" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27831" e_stop="27570"/>
          <exon e_start="26936" e_stop="26801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATA</genome_strand>
        <mrna_strand>CCGGACCGGCATTACCAGGAAAAA-AAACTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGCAGCTGAGGAGAAGCCTCTTAGGAAAATGGCGGAAGCCTTCAAAGACCTAGCCAACACTTTGAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGCACTTTGGTCTCTCCTCTATTCCGTTGCCTCGGTATCGCCTTCAAGTTTGCCGAGCTAGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGATCTAGCAGATGCATCAAAGTCTATTACAACGTTGCACACTATGATGGATCAAGATATTCAAGCAAACTGTGTGAGGAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444965" ref_strand="+" ref_description="SGN-E444965 [cSTA-44-I24]">
      <seq>ccggaccggcattaccaggaaaaaaaactccggcgacatcacggtgctgattcaatggcgaatcacgcagctgaggagaagcctcttaggaaaatggcggaagccttcaaagacctagccaacactttgaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgcactttggtctctcctctattccgttgcctcggtatcgccttcaagtttgccgagctagattacgttgctaaggtgggtgatctagcagatgcatcaaagtctattacaacgttgcacactatgatggatcaagatattcaagcaaactgtgtgaggaaggcaggtagtcatacaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28131" stop="26531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27831" g_stop="27570" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26831" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="367" r_length="106" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E444965" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27831" e_stop="27570"/>
          <exon e_start="26936" e_stop="26831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGA</genome_strand>
        <mrna_strand>CCGGACCGGCATTACCAGGAAAAA-AAACTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGCAGCTGAGGAGAAGCCTCTTAGGAAAATGGCGGAAGCCTTCAAAGACCTAGCCAACACTTTGAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGCACTTTGGTCTCTCCTCTATTCCGTTGCCTCGGTATCGCCTTCAAGTTTGCCGAGCTAGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGATCTAGCAGATGCATCAAAGTCTATTACAACGTTGCACACTATGATGGATCAAGATATTCAAGCAAACTGTGTGAGGAAGGCAGGTAGTCATACAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275008" ref_strand="+" ref_description="SGN-E275008 [cLEN-16-B3]">
      <seq>aatatatcaggaccggaccggaccggaattaccacggaaaaggaattccggcgacatcacggtgctgattcaatggcgaatcacgtagctgacgaaaagcctcttaggaaaatggcggaagctttcaaagacctagccaacactttaaattctcaaaccctagatgaagctgcgaagatggaagtagctcctttctctcacgcttgtactttggtctctcctctattccgctgccacggaatcgccttcaagtttgctgagctcgattacgttgctaaggtgaatgatctagcagaggcatcaaagtctattacaacgctgcacacaatgatggatcaagatattcaagcaaactgtgtgagaaaggcaggtagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28141" stop="26539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27853" g_stop="27570" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26839" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="377" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E275008" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27853" e_stop="27570"/>
          <exon e_start="26936" e_stop="26839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCA</genome_strand>
        <mrna_strand>AATATATCAGGACCGGACCGGACCGGA-----ATTACCACGGAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGACGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCGAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCACGGAATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGCTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444818" ref_strand="+" ref_description="SGN-E444818 [cSTA-44-I19]">
      <seq>ccggaccggcattaccaggaaaaaaaactccggcgacatcacggtgctgattcaatggcgaatcacgcagctgaggagaagcctcttaggaaaatggcggaagccttcaaagacctagccaacactttgaattctcaaaccctagatgaagctgctaagatggaagtagctcctttctctcacgcttgcactttggtctctcctctattccgttgcctcggtatcgccttcaagtttgccgagctagattacgttgctaaggtgggtgatctagcagatgcatcaaagtctattacaacgttgcacactatgatggatcaagatattcaagcaaactgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28131" stop="26556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27831" g_stop="27570" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26936" g_stop="26856" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="342" r_length="81" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E444818" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27831" e_stop="27570"/>
          <exon e_start="26936" e_stop="26856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAGGTTATCATCCTCGATTCACAATCCAATTCGATTTTTGATTGAGGATTACTTTTTGTTCTAATTAATCAATTTTGGAGTTGTGATCACATTGATTATGCATGAATTGTATGGAAGCTGGTAAATATTACTACTACTATTACTCTATTTGTAGCATAATGTTTTTCATTTTACACCTTTTCGAAGATTTTAAGTGGAACTCTTTTGATAGTACATTTTGTGTTGTTTTTCAGTGTTCATATTTGATTTTTTCGCATCAAGTTATGTGCGAGTTTTCAACGAGGAATTGATCAAATTTATTATTTGAAGTGGAGAGGGGCAGATATTTTTGGAAGGACTAATGAATTGTAGGGATCACATGAAGTTTATTAGTTTGATCACTTGTCTCATATTTTTTGGTATCCATACAGTAGTATATTAATCCTCTTACCTGCTATGCTTTTCCAGCTGTGGATTTAGCTTACAGCAAAAAGCTTTGCCCTTTGGCTTCCACTGATAGTAGGTTTTCCTTTCATCATGCATGCTTTTGGTAGCATATATTGCATACGAATATATGTGTTTAGGTAGGTATATGCAATTATTCATAAAAAATATGGTTGATTTGAGTAACTAAACAATTGTTAATGGTGACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTG</genome_strand>
        <mrna_strand>CCGGACCGGCATTACCAGGAAAAA-AAACTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGCAGCTGAGGAGAAGCCTCTTAGGAAAATGGCGGAAGCCTTCAAAGACCTAGCCAACACTTTGAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGCACTTTGGTCTCTCCTCTATTCCGTTGCCTCGGTATCGCCTTCAAGTTTGCCGAGCTAGATTACGTTGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGATCTAGCAGATGCATCAAAGTCTATTACAACGTTGCACACTATGATGGATCAAGATATTCAAGCAAACTGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444970" ref_strand="+" ref_description="SGN-E444970 [cSTA-44-K8]">
      <seq>ccggaccggcatttcttttaaaaaaaactccggcgacatcgcggggctgattcaatggcgaatcacgcacctgaggagaagcctcttatgaaaatggcggaagccttcaaagacctagccaacactttgaattctcaaaccctacatgaagctgctaagatggaagtagctgctttctctcacgcttgcactttggtctctcctctattacgttgcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="28111" stop="27312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27831" g_stop="27612" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E444970" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27831" e_stop="27612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTC</genome_strand>
        <mrna_strand>CCGGACCGGCATTTCTTTTAAAAA-AAACTCCGGCGACATCGCGGGGCTGATTCAATGGCGAATCACGCACCTGAGGAGAAGCCTCTTATGAAAATGGCGGAAGCCTTCAAAGACCTAGCCAACACTTTGAATTCTCAAACCCTACATGAAGCTGCTAAGATGGAAGTAGCTGCTTTCTCTCACGCTTGCACTTTGGTCTCTCCTCTATTACGTTGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312885" ref_strand="+" ref_description="SGN-E312885 [cTOA-8-J9]">
      <seq>caagattgctttctctacgaatagccggaactgcagttgaaggcaccacattaagaattgagaagaaatactggggtggtgaagagggaaattcaatttaccgctggttccggactagttcaagtggaacaaacatagaagtcaatgatgagatgacatcctcgtacaagctgtctattcatgatataggatattttatatctgtatcctgtgaacctgttcgaaatgattgggctcgtggtcctatagttatctcggaacaagttggacctattgttccagggccaccgacttgccattcgcttgaatttcaaggatctttggttgaaggagaacgtgtgagctttgttgcttcttatagtggaggggagaagggagaatgcatacacgaatggtttagagtgaatcatgatggtggcaaagacaaaataagctgtgatgagtttctggatttgactcttgaggatgtcagtaattgtatagagcttatttatactcccatccgcaaagatacattaaaaggaagctgtaggagcatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="51910" stop="53516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52210" g_stop="52322" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52323" i_stop="52398" i_length="76">
            <donor d_prob="0.489" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52399" g_stop="52567" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="282" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52568" i_stop="52796" i_length="229">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52797" g_stop="52881" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="367" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52882" i_stop="52970" i_length="89">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52971" g_stop="53044" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="441" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53045" i_stop="53116" i_length="72">
            <donor d_prob="0.277" d_score="1.00"/>
            <acceptor a_prob="0.129" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53117" g_stop="53216" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="541" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E312885" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52210" e_stop="52322"/>
          <exon e_start="52399" e_stop="52567"/>
          <exon e_start="52797" e_stop="52881"/>
          <exon e_start="52971" e_stop="53044"/>
          <exon e_start="53117" e_stop="53216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATTGCTTTCTCTACGAATAGCCGGAACTGCAGTTGAAGGCACCACATTAAGAATTGAGAAGAAATATTGGGGTGGTGAAGAGGGAAATTCAATTTACCGCTGGTTCCGGGTATTTAAATGCGCTTTTAAATGCTTAATCCTCTTTACAAGCAAATAAGCTGACTAGTATGAATGTTACTGTGCAGACTAGTTCAAGTGGAACAAACATAGAAGTCAATGATGAGATGACATCCTCATACAAGCTGTCTATTCATGATATAGGATATTTTATATCTGTATCCTGTGAACCTGTTCGAAATGATTGGGCTCGTGGTCCTATAGTTATCTCGGAACAAGTTGGACCTATCGTTCCAGGTATTACCAAATGAATCTCTGCATATGAATAGGTCAACATGAATTATTATCAGTTTTCAACTTCTGAATTGGTTGCTTGGAAGTTAATAAGATTACTTTCTTTTTTTCATATAACAAGATTACTCAGTTTGCTAGTTATTTAGGACAGACATGCAACCACTGATTGCCTTATTTTTTAAGTTCAAAATGATACTTAGATATGAGTTATATCTAAAACCCTTTACTACAGGGCCACCGACTTGCCATTCACTTGAATTTCAAGGATCTTTGGTTGAAGGAGAACGTGTGAGCTTTGTTGCTTCTTATAGTGGAGGGTACAGATACATCTTAAAATTATCCATCTTGAACTTGAGTCTCTGAATTCGTTTTGGTTTGTTCTGAAGTTAAAAGTGTTCATGCGCAGGGAGAAGGGAGAATGCATACACGAATGGTTTAGAGTGAATCATGATGGTGGCAAAGACAAAATAAGCTGTGATGGTAGGGACATATATTGTCATAGTTTATTATAACGGTGCAAAAACTTGTCGAGTAAATCAGTTTTGTTGGCAGAGTTTCTGGATTTGACTCTTGAGGATGTCAGTAATTGTATAGAGCTTATTTATACTCCCATCCGCAAAGATACATTAAAAGGAAGCTGTAGGAGCATATT</genome_strand>
        <mrna_strand>CAAGATTGCTTTCTCTACGAATAGCCGGAACTGCAGTTGAAGGCACCACATTAAGAATTGAGAAGAAATACTGGGGTGGTGAAGAGGGAAATTCAATTTACCGCTGGTTCCGG............................................................................ACTAGTTCAAGTGGAACAAACATAGAAGTCAATGATGAGATGACATCCTCGTACAAGCTGTCTATTCATGATATAGGATATTTTATATCTGTATCCTGTGAACCTGTTCGAAATGATTGGGCTCGTGGTCCTATAGTTATCTCGGAACAAGTTGGACCTATTGTTCCAG.....................................................................................................................................................................................................................................GGCCACCGACTTGCCATTCGCTTGAATTTCAAGGATCTTTGGTTGAAGGAGAACGTGTGAGCTTTGTTGCTTCTTATAGTGGAGG.........................................................................................GGAGAAGGGAGAATGCATACACGAATGGTTTAGAGTGAATCATGATGGTGGCAAAGACAAAATAAGCTGTGATG........................................................................AGTTTCTGGATTTGACTCTTGAGGATGTCAGTAATTGTATAGAGCTTATTTATACTCCCATCCGCAAAGATACATTAAAAGGAAGCTGTAGGAGCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479708" ref_strand="+" ref_description="SGN-E479708 [cSTD-11-E1]">
      <seq>tggtggcaaagacaaaataagctgtgatgagtttctggatttgactcttgaggatgtcagtaattgtatagagcttatttatactcccatccgcaaagatacattaaaaggaagctgtaggagcatattgtcttgcccagtagctcctggggacccaattggtgttgaattgacaattcctaaatgctgcgagggtgagacaatagttcccaatcagagatactttggagggaaagaaggtgatagtgaatatgtttggtatcggagtaagaataagcttcatgaatctgctctgctgaacttgcctagcgttacagaggatgtacatatttgtgcaaggagtttatcatatacgccatcgcttgaagatgtgggagcatatttgtcattatattggctgccaattcgcatcgatggcaaatctgggaacccattagcatcagtttgcgagtctccagtctccccagcttctccagtagtttctaatgttcatgcaaaggagctctcatccagtagttaccttggggaaggagaatattttggtggtcatgaaagaacaagcttgtttagctggtacagagaaactgatgaggggaacatcactctcatcaatggagcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="52716" stop="55236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53016" g_stop="53044" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53045" i_stop="53116" i_length="72">
            <donor d_prob="0.277" d_score="0.00"/>
            <acceptor a_prob="0.129" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53117" g_stop="53236" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="149" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53237" i_stop="53892" i_length="656">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53893" g_stop="54088" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="345" r_length="196" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54089" i_stop="54207" i_length="119">
            <donor d_prob="0.920" d_score="0.94"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54208" g_stop="54329" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="467" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54330" i_stop="54781" i_length="452">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54782" g_stop="54936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="622" r_length="155" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E479708" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53016" e_stop="53044"/>
          <exon e_start="53117" e_stop="53236"/>
          <exon e_start="53893" e_stop="54088"/>
          <exon e_start="54208" e_stop="54329"/>
          <exon e_start="54782" e_stop="54936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGCAAAGACAAAATAAGCTGTGATGGTAGGGACATATATTGTCATAGTTTATTATAACGGTGCAAAAACTTGTCGAGTAAATCAGTTTTGTTGGCAGAGTTTCTGGATTTGACTCTTGAGGATGTCAGTAATTGTATAGAGCTTATTTATACTCCCATCCGCAAAGATACATTAAAAGGAAGCTGTAGGAGCATATTGTCTTGCCCAGTCGCTCCTGGTATGTCATTTGCTCTTGCATAATCTTTTGTTAGAAAAGGCACTTTCAGTGCCTGTCATATTTGTAGCATAATTAGAAATTGATTATTTCATGTAGTAGCGAGTGAGATTTTTCTTTGCAACACTTGGGTATGCAAATGCGTGAAAAATAACGCGAAAGCGTCAGCCTTGGCGCTGTTTTAGGTTTCCCAACAAAATTTATAAGTGTACTTTGAAAGTTCTGGTTTTGATGTATGCCTCTGTTCTACTATTCTGATCACAAGTCTCTACTTCCATGATCGTTCTGCCACTAATGAATTTTTATCAAGTTCTTCAGACATTTGAATTCCGCTTCTTTTTGTTCTCTCAATCAATCACATGAATTGATTCTGTTTTGGTGAAGCTTGAGCAGGATATTTTTGGCCAAATAACATATCTTTGATTATTCATGATCCCGGAATGTGATTAGCAGATTAGCTAGAATACGAACTTCCTCAGATGTTCCAATTTTCAACAGCTTTTTATTTTCACGAACTTTTAACAGTTTATATGCACTATTTTCTTGTGTTGCTACATGCAGTAAACCACCATAATTGCACTGACTTTCTGCTTTATATTCTGCTGTTAAATCATTCATATGAAGTACTTCTACCTTATATTGACCTTGCGTTGAGATAGGGGACCCAATTGGTGTTGAATTGTCAATTCCTAAATGCTGCGAGGGCGAGACAATAGTTCCCAATCAGAGATACTTTGGAGGGAAAGAAGGTGATAGTGAATATGTTTGGTATCGGAGTAAGAATAAGCTTCATGAATCTGCTCTACTGAACTTGCCTAGCATTACAGAGGATGTACATATTTGTGCAAGAACTTTGTAAGTCTTCTTAAGAGTAATAATTACTAACTTTGACTACTTGTTGAAAAAAACTCAAAAGAACACATCTCATGTTTGTTTATTTTGTGAGTAATCCTTTTTGAATATGTATTTACCAGATCATATACGCCATCGCTTGAAGATGTGGGAGCATATTTGTCATTATATTGGTTGCCAATTCGCATTGACGGCAAATCTGGGAACCCATTAGCATCAGTTTGCGAGTCTCCAGTCTCCCCAGGTAGACCTTGATTCCTACTCCTGATCAGATTTATGTCTCCCTTCCCCATCATTGATTACAACCTAATATCTTGAAGGTGTTTTTTTTAATTTGTGATTAGGTAAATAATTTTATTAACATTTGGGGGGGAAAACCCCATATACAATCCATATACCAGAAGAAGAGAACCTACACCAAAATATGGTTCTCCACAAAAGAGATCCAATCCTCTATACAGATTGGTACCTCATTCATTTTTACAAAATCAAGTTCCACCCGTTCAAAAACTTTCCATTTTTAATTCTTTTAGTATGAGATAGTATATTCTATTTCAGAGCTTTCAATTAAAGGGTGCTGGACTCCTACCTGATATTCAATCTAAAAAGGAAAGAATGCCATACAAAATGGAACATAGGGAGTACTTGCTTATTTTGAAGTGTTGTACTGAAGGTGTCTTGTGAAATATGTGGCAGCTTTTCCAGTAGTTTCTAATGTTCATGCAAAGGAGCTCTCATCCAGTAGTTACCTTGGGGAAGGAGAATATTTTGGTGGTCATGAAGGAACAAGCTTATTTAGCTGGTACAGAGAAACTGATGAGGGAACAATCACTCTCATCAATGGAGCATGT</genome_strand>
        <mrna_strand>TGGTGGCAAAGACAAAATAAGCTGTGATG........................................................................AGTTTCTGGATTTGACTCTTGAGGATGTCAGTAATTGTATAGAGCTTATTTATACTCCCATCCGCAAAGATACATTAAAAGGAAGCTGTAGGAGCATATTGTCTTGCCCAGTAGCTCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACCCAATTGGTGTTGAATTGACAATTCCTAAATGCTGCGAGGGTGAGACAATAGTTCCCAATCAGAGATACTTTGGAGGGAAAGAAGGTGATAGTGAATATGTTTGGTATCGGAGTAAGAATAAGCTTCATGAATCTGCTCTGCTGAACTTGCCTAGCGTTACAGAGGATGTACATATTTGTGCAAGGAGTTT.......................................................................................................................ATCATATACGCCATCGCTTGAAGATGTGGGAGCATATTTGTCATTATATTGGCTGCCAATTCGCATCGATGGCAAATCTGGGAACCCATTAGCATCAGTTTGCGAGTCTCCAGTCTCCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCCAGTAGTTTCTAATGTTCATGCAAAGGAGCTCTCATCCAGTAGTTACCTTGGGGAAGGAGAATATTTTGGTGGTCATGAAAGAACAAGCTTGTTTAGCTGGTACAGAGAAACTGATGAGGGGAACATCACTCTCATCAATGGAGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591546" ref_strand="+" ref_description="SGN-E591546 [45261]">
      <seq>atcggagcaagaataagcttcatgaatctgctctgctgaacttccctagtgttacagaggatgtacatatttgtgcaaggactatctcatatacgccatcacttgaagatgtgggagcatatttgtcattatattggctgccaattcgcatcgatggcaaatctgggaacccattagcatcagtttgcgagtctccagtctccccagcttctccagtagtttctaatgttcatgcaaaggagctctcatccagtagttaccttggggaaggagaatattttggtggtcatgaaggaacaagcttgtttagctggtacagagaaactgatgagggaacaatcactctcatcaatggagcatgttctaaaacttatgaagttgtagatgaagattacaattgtcgtttacttttcggatatacgccagttcgttcagattcaattattggtgaacatcagttatccgagccaactcatgtgattctcccagatattccaagaattgagacgctggctcttactgggaaggctgttgaaggagacatactaactgctgttgaaattattccaaagagtgaaattcaagagcgtgtatgggcaaaagtaataggaaggatatcaaattatactttggtttcatttcgactgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="53704" stop="57022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54004" g_stop="54088" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54089" i_stop="54207" i_length="119">
            <donor d_prob="0.920" d_score="0.90"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54208" g_stop="54329" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="207" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54330" i_stop="54781" i_length="452">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54782" g_stop="54989" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="415" r_length="208" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54990" i_stop="55239" i_length="250">
            <donor d_prob="0.272" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55240" g_stop="55313" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="489" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55314" i_stop="56581" i_length="1268">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56582" g_stop="56711" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="621" r_length="132" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E591546" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54004" e_stop="54088"/>
          <exon e_start="54208" e_stop="54329"/>
          <exon e_start="54782" e_stop="54989"/>
          <exon e_start="55240" e_stop="55313"/>
          <exon e_start="56582" e_stop="56711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGAGTAAGAATAAGCTTCATGAATCTGCTCTACTGAACTTGCCTAGCATTACAGAGGATGTACATATTTGTGCAAGAACTTTGTAAGTCTTCTTAAGAGTAATAATTACTAACTTTGACTACTTGTTGAAAAAAACTCAAAAGAACACATCTCATGTTTGTTTATTTTGTGAGTAATCCTTTTTGAATATGTATTTACCAGATCATATACGCCATCGCTTGAAGATGTGGGAGCATATTTGTCATTATATTGGTTGCCAATTCGCATTGACGGCAAATCTGGGAACCCATTAGCATCAGTTTGCGAGTCTCCAGTCTCCCCAGGTAGACCTTGATTCCTACTCCTGATCAGATTTATGTCTCCCTTCCCCATCATTGATTACAACCTAATATCTTGAAGGTGTTTTTTTTAATTTGTGATTAGGTAAATAATTTTATTAACATTTGGGGGGGAAAACCCCATATACAATCCATATACCAGAAGAAGAGAACCTACACCAAAATATGGTTCTCCACAAAAGAGATCCAATCCTCTATACAGATTGGTACCTCATTCATTTTTACAAAATCAAGTTCCACCCGTTCAAAAACTTTCCATTTTTAATTCTTTTAGTATGAGATAGTATATTCTATTTCAGAGCTTTCAATTAAAGGGTGCTGGACTCCTACCTGATATTCAATCTAAAAAGGAAAGAATGCCATACAAAATGGAACATAGGGAGTACTTGCTTATTTTGAAGTGTTGTACTGAAGGTGTCTTGTGAAATATGTGGCAGCTTTTCCAGTAGTTTCTAATGTTCATGCAAAGGAGCTCTCATCCAGTAGTTACCTTGGGGAAGGAGAATATTTTGGTGGTCATGAAGGAACAAGCTTATTTAGCTGGTACAGAGAAACTGATGAGGGAACAATCACTCTCATCAATGGAGCATGTTCTAAAACTTATGAAGTTGTAGATGAAGATTACAGTTGTCGTTTACTTTTCGGGTAACAGCTTCTCTAACTTTTGGACTGGATTTTGAAGTGTTTGGTTGTAAGATACAGGGGCATAGTAGTTGATGCTTATATATGCAGATGAATTTCTAGTCTTCTGCAGGAGTGTTTCTTCTGTTTTTTCTTTTTTGAATAATCTTGTTAAAGAAAAAATGAAAATAAACAAATGACACGAAAAAACTATAAAGAAGAGGTGCATGTATATTATCTTTTTCTTTCTAAAACATGTTACCAAAATTTGCAGATATACGCCAGTTCGTTCAGATTCAATTATTGGTGAACATCAGTTATCCGAGCCAACTCATGTGATTCTCCCAGGTATTTGTCTTATTATGGCATAAGGTAGTCGTCTATTTTGTCCATCATGTAGAGGTCCTTATGAATGGGTTGGTTTTGTACTAGTTTGAGATAGACACTGCTACTCTTCAACTTCACACAATTAAATGTTTTGGTGCCATTGTGACATTACAACAAATTTTAGAAGTAACTGAGAAATGAATATAAGAGAATGATGTACTGGTGACTGCTGAGTTGATAAATGCACCACAGACCTTTTTATAGGTGTTGTTGGAGTATAAAGTGAATACATGTCTATCTTCACACATATCTAGATTCACTGAATTTGAGCAAGTGAAATATCATTGTAGTCTATACTCTATATAGGATATGTCTGGATATTCTCTATTCAAGTATAGAGTACTTTCTAAAACTCCTCTGAGAATCCCTCTTGTACATTGTTGGTTAATCAAGTCTCTTCTCAGTGGTGGTGAAGCCACGTGGTTACCATTAGGTGAACTCACATTTTCCAATTTAAACTTTAGATTTTATTATAGGTAACTAGGTAATTAGTGAAAAGAGGATTCATAAATTAGTGAGCACCCATGATCATCAATCGACAAATGGTGCAGTGGTTAACAGACAGAAGTAGGAGGTGCAACTACCTCTGCATTCAGGGTACCACTCTTGTTTGATGAACTCTTTTTATGATTAGATCTTCTTTTAGTCCTTTTCTTCATTCATGGCTGATTCTTCTCTTCCTTTACTTGTATATTTCTTTTTGCCTCTCCTTTTTTCCCCCTTCTTTCACCACAGAGTGATGAAATCTGGGTTTTCCTTTCCTTATTCTTTTTCCTTTTACAAACACAAAGACACACTAGTCACCAAGTGAGGATGTCTAAAGGCTAGACCAGTAAAGCGAAAAATCTATTTACTTGCAAAGTCTAGCTCTATAAAAGTAAGTCATATTTATTGTTTCGAAAAAAATATAAAAACTCACCGCAGACAATTGCGAATACAATGACATGAGTATCGCGAGTACCATATAAGGAGACAACAGTTCCCTGAATCAACGTAGGACAATCTAACAGAAAAGAAGAGTTTTTCAATCTTCTACTACAATTCCAACAGTCCAACCTTTTGATTATCTGTCATATGTTTAGCTCAGCAAATATTCCTTTGTGGTTTTGCTTCTCTGTAGAGCATTCTTCATTTAAAATTTTTCCATTCACTATCTAGAATACTGACCTTTTCAATAATTGTGAAAAGTTTACTAAGGTCATTTTCTGACAGTGACGCTATGTCCACAGATATTCCAAGAATTGAGACGGTGGCTCTTACTGGGAAAGCTGTTGAAGGAGATATACTAACTGCTGTTGAAATTATTCCAAAGAGTGAAATTCAAGAGCGTGTATGGGCAAAA-T-ATAGGAAGGATATCAA</genome_strand>
        <mrna_strand>ATCGGAGCAAGAATAAGCTTCATGAATCTGCTCTGCTGAACTTCCCTAGTGTTACAGAGGATGTACATATTTGTGCAAGGACTAT.......................................................................................................................CTCATATACGCCATCACTTGAAGATGTGGGAGCATATTTGTCATTATATTGGCTGCCAATTCGCATCGATGGCAAATCTGGGAACCCATTAGCATCAGTTTGCGAGTCTCCAGTCTCCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCCAGTAGTTTCTAATGTTCATGCAAAGGAGCTCTCATCCAGTAGTTACCTTGGGGAAGGAGAATATTTTGGTGGTCATGAAGGAACAAGCTTGTTTAGCTGGTACAGAGAAACTGATGAGGGAACAATCACTCTCATCAATGGAGCATGTTCTAAAACTTATGAAGTTGTAGATGAAGATTACAATTGTCGTTTACTTTTCGG..........................................................................................................................................................................................................................................................ATATACGCCAGTTCGTTCAGATTCAATTATTGGTGAACATCAGTTATCCGAGCCAACTCATGTGATTCTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCCAAGAATTGAGACGCTGGCTCTTACTGGGAAGGCTGTTGAAGGAGACATACTAACTGCTGTTGAAATTATTCCAAAGAGTGAAATTCAAGAGCGTGTATGGGCAAAAGTAATAGGAAGGATATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467181" ref_strand="+" ref_description="SGN-E467181 [cSTB-42-F17]">
      <seq>cttgaagatgtgggagcatatttgtcattatattggctgccaattcgcatcgatggcaaatctgggaacccattagcatcagtttgcgagtctccagtctccccagcttctccagtagtttctaatgttcatgcaaaggagctctcatccagtagttaccttggggaaggagaatattttggtggtcatgaaggaacaagcttgtttagctggtacagagaaactgatgagggaacaatcactctcatcaatggagcatgttctaaaacttatgaagttgtagatgaagattacaattgtcgtttacttttcggatatacgccagttcgttcagattcaattattggtgaacatcagttatccgagccaactcatgtgattctcccagatattccaagaattgagacgctggctcttactgggaaggctgttgaaggagacatactaactgctgttgaaattattccaaagagtgaaattcaagagcgtgtatgggcaaagtataggaaggatatcaaatatacttggttcatttcgactgaaacaggaaataataagtcctttgagccattaccatcacaacgttcttgctcatacaggttacgatttgaggacataggtcgctctcttagatgtgaatgcatcgtgtctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="53924" stop="57525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54224" g_stop="54329" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54330" i_stop="54781" i_length="452">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54782" g_stop="54989" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="314" r_length="208" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54990" i_stop="55239" i_length="250">
            <donor d_prob="0.272" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55240" g_stop="55313" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="388" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55314" i_stop="56581" i_length="1268">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56582" g_stop="56720" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="527" r_length="139" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56721" i_stop="57098" i_length="378">
            <donor d_prob="0.592" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57099" g_stop="57225" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="654" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E467181" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54224" e_stop="54329"/>
          <exon e_start="54782" e_stop="54989"/>
          <exon e_start="55240" e_stop="55313"/>
          <exon e_start="56582" e_stop="56720"/>
          <exon e_start="57099" e_stop="57225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAAGATGTGGGAGCATATTTGTCATTATATTGGTTGCCAATTCGCATTGACGGCAAATCTGGGAACCCATTAGCATCAGTTTGCGAGTCTCCAGTCTCCCCAGGTAGACCTTGATTCCTACTCCTGATCAGATTTATGTCTCCCTTCCCCATCATTGATTACAACCTAATATCTTGAAGGTGTTTTTTTTAATTTGTGATTAGGTAAATAATTTTATTAACATTTGGGGGGGAAAACCCCATATACAATCCATATACCAGAAGAAGAGAACCTACACCAAAATATGGTTCTCCACAAAAGAGATCCAATCCTCTATACAGATTGGTACCTCATTCATTTTTACAAAATCAAGTTCCACCCGTTCAAAAACTTTCCATTTTTAATTCTTTTAGTATGAGATAGTATATTCTATTTCAGAGCTTTCAATTAAAGGGTGCTGGACTCCTACCTGATATTCAATCTAAAAAGGAAAGAATGCCATACAAAATGGAACATAGGGAGTACTTGCTTATTTTGAAGTGTTGTACTGAAGGTGTCTTGTGAAATATGTGGCAGCTTTTCCAGTAGTTTCTAATGTTCATGCAAAGGAGCTCTCATCCAGTAGTTACCTTGGGGAAGGAGAATATTTTGGTGGTCATGAAGGAACAAGCTTATTTAGCTGGTACAGAGAAACTGATGAGGGAACAATCACTCTCATCAATGGAGCATGTTCTAAAACTTATGAAGTTGTAGATGAAGATTACAGTTGTCGTTTACTTTTCGGGTAACAGCTTCTCTAACTTTTGGACTGGATTTTGAAGTGTTTGGTTGTAAGATACAGGGGCATAGTAGTTGATGCTTATATATGCAGATGAATTTCTAGTCTTCTGCAGGAGTGTTTCTTCTGTTTTTTCTTTTTTGAATAATCTTGTTAAAGAAAAAATGAAAATAAACAAATGACACGAAAAAACTATAAAGAAGAGGTGCATGTATATTATCTTTTTCTTTCTAAAACATGTTACCAAAATTTGCAGATATACGCCAGTTCGTTCAGATTCAATTATTGGTGAACATCAGTTATCCGAGCCAACTCATGTGATTCTCCCAGGTATTTGTCTTATTATGGCATAAGGTAGTCGTCTATTTTGTCCATCATGTAGAGGTCCTTATGAATGGGTTGGTTTTGTACTAGTTTGAGATAGACACTGCTACTCTTCAACTTCACACAATTAAATGTTTTGGTGCCATTGTGACATTACAACAAATTTTAGAAGTAACTGAGAAATGAATATAAGAGAATGATGTACTGGTGACTGCTGAGTTGATAAATGCACCACAGACCTTTTTATAGGTGTTGTTGGAGTATAAAGTGAATACATGTCTATCTTCACACATATCTAGATTCACTGAATTTGAGCAAGTGAAATATCATTGTAGTCTATACTCTATATAGGATATGTCTGGATATTCTCTATTCAAGTATAGAGTACTTTCTAAAACTCCTCTGAGAATCCCTCTTGTACATTGTTGGTTAATCAAGTCTCTTCTCAGTGGTGGTGAAGCCACGTGGTTACCATTAGGTGAACTCACATTTTCCAATTTAAACTTTAGATTTTATTATAGGTAACTAGGTAATTAGTGAAAAGAGGATTCATAAATTAGTGAGCACCCATGATCATCAATCGACAAATGGTGCAGTGGTTAACAGACAGAAGTAGGAGGTGCAACTACCTCTGCATTCAGGGTACCACTCTTGTTTGATGAACTCTTTTTATGATTAGATCTTCTTTTAGTCCTTTTCTTCATTCATGGCTGATTCTTCTCTTCCTTTACTTGTATATTTCTTTTTGCCTCTCCTTTTTTCCCCCTTCTTTCACCACAGAGTGATGAAATCTGGGTTTTCCTTTCCTTATTCTTTTTCCTTTTACAAACACAAAGACACACTAGTCACCAAGTGAGGATGTCTAAAGGCTAGACCAGTAAAGCGAAAAATCTATTTACTTGCAAAGTCTAGCTCTATAAAAGTAAGTCATATTTATTGTTTCGAAAAAAATATAAAAACTCACCGCAGACAATTGCGAATACAATGACATGAGTATCGCGAGTACCATATAAGGAGACAACAGTTCCCTGAATCAACGTAGGACAATCTAACAGAAAAGAAGAGTTTTTCAATCTTCTACTACAATTCCAACAGTCCAACCTTTTGATTATCTGTCATATGTTTAGCTCAGCAAATATTCCTTTGTGGTTTTGCTTCTCTGTAGAGCATTCTTCATTTAAAATTTTTCCATTCACTATCTAGAATACTGACCTTTTCAATAATTGTGAAAAGTTTACTAAGGTCATTTTCTGACAGTGACGCTATGTCCACAGATATTCCAAGAATTGAGACGGTGGCTCTTACTGGGAAAGCTGTTGAAGGAGATATACTAACTGCTGTTGAAATTATTCCAAAGAGTGAAATTCAAGAGCGTGTATGGGCAAAATATAGGAAGGATATCAAATATACTTGGTACTTCTTTGTTTTCATCATTTGCTATCCTGGAATCAACTGTTTTTCCTTAATGGCTGATTATTGTTTACTGGATATTATTTCATGTCAAGTTAGACAGTGATAATATAGAGATGATTTCTCTTGCCACACTTGCTAATTTTTCTATATTCGGAGAAAAAGGAACCAAAAATTGCTCTAATATCTGGATATATGGAAGCACATATAGTTGGTGTTATCTTGATATGATTTACTTCTTGACTCTTATGTATAATTTACTGCATCCAAGATTGCAAACTGCAATTGAGTGATCTAGCATAATCCAGAGACTGCATTGCTTCTTGAGGTTCTATTGTAGAGTATATCGAGAAGCTTCTGATATTTTATTGGCTGCTGCAGGTTCATTTCGACTGAAACAGGAAATAATAAGTCCTTTGAGCCATTACCATCACAACGTTCTTGCTCATACAGGTTACGATTTGAGGACATAGGTCGCTCTCTTAGATGTGAATGCATCGTGTCTGAT</genome_strand>
        <mrna_strand>CTTGAAGATGTGGGAGCATATTTGTCATTATATTGGCTGCCAATTCGCATCGATGGCAAATCTGGGAACCCATTAGCATCAGTTTGCGAGTCTCCAGTCTCCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCCAGTAGTTTCTAATGTTCATGCAAAGGAGCTCTCATCCAGTAGTTACCTTGGGGAAGGAGAATATTTTGGTGGTCATGAAGGAACAAGCTTGTTTAGCTGGTACAGAGAAACTGATGAGGGAACAATCACTCTCATCAATGGAGCATGTTCTAAAACTTATGAAGTTGTAGATGAAGATTACAATTGTCGTTTACTTTTCGG..........................................................................................................................................................................................................................................................ATATACGCCAGTTCGTTCAGATTCAATTATTGGTGAACATCAGTTATCCGAGCCAACTCATGTGATTCTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCCAAGAATTGAGACGCTGGCTCTTACTGGGAAGGCTGTTGAAGGAGACATACTAACTGCTGTTGAAATTATTCCAAAGAGTGAAATTCAAGAGCGTGTATGGGCAAAGTATAGGAAGGATATCAAATATACTTG..........................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTCGACTGAAACAGGAAATAATAAGTCCTTTGAGCCATTACCATCACAACGTTCTTGCTCATACAGGTTACGATTTGAGGACATAGGTCGCTCTCTTAGATGTGAATGCATCGTGTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462599" ref_strand="+" ref_description="SGN-E462599 [cPRO-12-M9]">
      <seq>atgaagttgtagatgaagattacaattgtcgtttacttttcggatatacgccagttcgttcagattcaattattggtgaacatcagttatccgagccaactcatgtgattctcccagatattccaagaattgagacgctgactcttactgggaaggctgttgaaggagacatactaactgctgttgaaattattccaaagagtgaaattcaagagcgtgtatgggcaaagtataggaaggatatcaaatatacttggttcatttcgactgaaacaggaaataataagtcctttgagccattaccatcacaacgttcttgctcatacaggttacgatttgaggacataggtcgctctcttagatgtgaatgcatcgtgtctgatgtttttggaaggtcaagtgatccagtgtatgctgaaactccttcagtttcaccaggtatccctcggatggataagctggacattgaaggtagaggttttcacactaatctgtatgctgttcgtggcatttatagtggcggaaaggagggcaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="54647" stop="58805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54947" g_stop="54989" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54990" i_stop="55239" i_length="250">
            <donor d_prob="0.272" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55240" g_stop="55313" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="117" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55314" i_stop="56581" i_length="1268">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56582" g_stop="56720" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="256" r_length="139" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56721" i_stop="57098" i_length="378">
            <donor d_prob="0.592" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57099" g_stop="57280" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="438" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57281" i_stop="58405" i_length="1125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58406" g_stop="58506" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="539" r_length="101" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E462599" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54947" e_stop="54989"/>
          <exon e_start="55240" e_stop="55313"/>
          <exon e_start="56582" e_stop="56720"/>
          <exon e_start="57099" e_stop="57280"/>
          <exon e_start="58406" e_stop="58506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTTGTAGATGAAGATTACAGTTGTCGTTTACTTTTCGGGTAACAGCTTCTCTAACTTTTGGACTGGATTTTGAAGTGTTTGGTTGTAAGATACAGGGGCATAGTAGTTGATGCTTATATATGCAGATGAATTTCTAGTCTTCTGCAGGAGTGTTTCTTCTGTTTTTTCTTTTTTGAATAATCTTGTTAAAGAAAAAATGAAAATAAACAAATGACACGAAAAAACTATAAAGAAGAGGTGCATGTATATTATCTTTTTCTTTCTAAAACATGTTACCAAAATTTGCAGATATACGCCAGTTCGTTCAGATTCAATTATTGGTGAACATCAGTTATCCGAGCCAACTCATGTGATTCTCCCAGGTATTTGTCTTATTATGGCATAAGGTAGTCGTCTATTTTGTCCATCATGTAGAGGTCCTTATGAATGGGTTGGTTTTGTACTAGTTTGAGATAGACACTGCTACTCTTCAACTTCACACAATTAAATGTTTTGGTGCCATTGTGACATTACAACAAATTTTAGAAGTAACTGAGAAATGAATATAAGAGAATGATGTACTGGTGACTGCTGAGTTGATAAATGCACCACAGACCTTTTTATAGGTGTTGTTGGAGTATAAAGTGAATACATGTCTATCTTCACACATATCTAGATTCACTGAATTTGAGCAAGTGAAATATCATTGTAGTCTATACTCTATATAGGATATGTCTGGATATTCTCTATTCAAGTATAGAGTACTTTCTAAAACTCCTCTGAGAATCCCTCTTGTACATTGTTGGTTAATCAAGTCTCTTCTCAGTGGTGGTGAAGCCACGTGGTTACCATTAGGTGAACTCACATTTTCCAATTTAAACTTTAGATTTTATTATAGGTAACTAGGTAATTAGTGAAAAGAGGATTCATAAATTAGTGAGCACCCATGATCATCAATCGACAAATGGTGCAGTGGTTAACAGACAGAAGTAGGAGGTGCAACTACCTCTGCATTCAGGGTACCACTCTTGTTTGATGAACTCTTTTTATGATTAGATCTTCTTTTAGTCCTTTTCTTCATTCATGGCTGATTCTTCTCTTCCTTTACTTGTATATTTCTTTTTGCCTCTCCTTTTTTCCCCCTTCTTTCACCACAGAGTGATGAAATCTGGGTTTTCCTTTCCTTATTCTTTTTCCTTTTACAAACACAAAGACACACTAGTCACCAAGTGAGGATGTCTAAAGGCTAGACCAGTAAAGCGAAAAATCTATTTACTTGCAAAGTCTAGCTCTATAAAAGTAAGTCATATTTATTGTTTCGAAAAAAATATAAAAACTCACCGCAGACAATTGCGAATACAATGACATGAGTATCGCGAGTACCATATAAGGAGACAACAGTTCCCTGAATCAACGTAGGACAATCTAACAGAAAAGAAGAGTTTTTCAATCTTCTACTACAATTCCAACAGTCCAACCTTTTGATTATCTGTCATATGTTTAGCTCAGCAAATATTCCTTTGTGGTTTTGCTTCTCTGTAGAGCATTCTTCATTTAAAATTTTTCCATTCACTATCTAGAATACTGACCTTTTCAATAATTGTGAAAAGTTTACTAAGGTCATTTTCTGACAGTGACGCTATGTCCACAGATATTCCAAGAATTGAGACGGTGGCTCTTACTGGGAAAGCTGTTGAAGGAGATATACTAACTGCTGTTGAAATTATTCCAAAGAGTGAAATTCAAGAGCGTGTATGGGCAAAATATAGGAAGGATATCAAATATACTTGGTACTTCTTTGTTTTCATCATTTGCTATCCTGGAATCAACTGTTTTTCCTTAATGGCTGATTATTGTTTACTGGATATTATTTCATGTCAAGTTAGACAGTGATAATATAGAGATGATTTCTCTTGCCACACTTGCTAATTTTTCTATATTCGGAGAAAAAGGAACCAAAAATTGCTCTAATATCTGGATATATGGAAGCACATATAGTTGGTGTTATCTTGATATGATTTACTTCTTGACTCTTATGTATAATTTACTGCATCCAAGATTGCAAACTGCAATTGAGTGATCTAGCATAATCCAGAGACTGCATTGCTTCTTGAGGTTCTATTGTAGAGTATATCGAGAAGCTTCTGATATTTTATTGGCTGCTGCAGGTTCATTTCGACTGAAACAGGAAATAATAAGTCCTTTGAGCCATTACCATCACAACGTTCTTGCTCATACAGGTTACGATTTGAGGACATAGGTCGCTCTCTTAGATGTGAATGCATCGTGTCTGATGTTTTTGGAAGGTCAAGTGATCCAGTGTATGCTGAAACTCCTTCAGTTTCACCAGGTCTTGTAGCTCTTAATTCTAATCTTGTTTCCACTTGTATATACTTAAAGATAAACCATAATTGTGAGATGGGTATTGTTGCCGTGTGTGGAGTGTCCCGTACTGACATTCCTCTCTTGACATGAATTTGTAGCAGATTGTATTTTGGGTTTCCTTTGTTTCTTTCTTTTATTTTAAAATTTGGTTGTGGTCGGTGTTTGTATTAGGTGTATGGTCAAAAAGTGCAGTCACTCACTGTCACCATGTATTGTCTTTGGTTAGTTTGAGAAGAGGACAAGTGGGCAAGTAAAAGTGGAAGGTCATGATTTTCATCCCTCTATGATTTAGACAAAAAGGAGGAAGTACATCCTTTTCTTCAACTTCCTTCCCACTCCAAACAACCAAAATGTAAATGATCCATGCTTTATCCAACGAATGTAAGGAAATCAATGAGTTGGTCTACTTTTTACCCTTCTCTTTCCTTTTTAGTAAGCCAGGCATACTGTTCGATTTTGGATTGGTTACATTTCTTGCCAGCATTCCATTTCCTACAAGGCTTGAGTGCTTCTCACAGTTAGTTCAATATGCTTGGGAAAGTCCTCCGAAAGTATCAGCAACTTATGATTGATTTCTTATTTGTTTCACTCTGTTAAGAGGAAATTTGTTAATGCCTAAGGCAGAGCCTAAAATTGACATGCCATTTTAGTAATCTTCTGCAGCTTTCTTGTACGCCATTATTAATATTGGATACTATCTTTCGTGCTGATGGCTGCTGGAGTTTTTTTGATTATTGCCAGGCAGATACTTCAACTTAGTTTTAGCTCATTGAGTTTCTTTCATTCATTTTACTCATATATTTGTAAAATTTAGCCTAATTGGGCCAACATTAAATTTGCTGTTGTCCTTTACTTGATACTTCCCCCCTTGTGACTGGCTCATCCTTGTATGTGTTTCCCTCCCCTCTTCAGGCCAAGCATATTCTTCCTTGTTGATGTCTTAGCTTTAATATATCTTGAAATATTTCTTTTGACAAATTGAATAACCTAACTTGTTCCCTGGCATATCAATCATGTGGCCTGTTAGGTAATTCTAATAGTTTTATATAATTCTTATTATGGAGTTTATTTATGAATCTGCTTTTCTCAGGTATCCCTCGGATGGATAAGCTGGACATTGAAGGAAGAGGTTTTCACACCAATCTGTATGCTGTTCGTGGCGTTTATAGTGGCGGAAAGGAGGGCAAAAGC</genome_strand>
        <mrna_strand>ATGAAGTTGTAGATGAAGATTACAATTGTCGTTTACTTTTCGG..........................................................................................................................................................................................................................................................ATATACGCCAGTTCGTTCAGATTCAATTATTGGTGAACATCAGTTATCCGAGCCAACTCATGTGATTCTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCCAAGAATTGAGACGCTGACTCTTACTGGGAAGGCTGTTGAAGGAGACATACTAACTGCTGTTGAAATTATTCCAAAGAGTGAAATTCAAGAGCGTGTATGGGCAAAGTATAGGAAGGATATCAAATATACTTG..........................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTCGACTGAAACAGGAAATAATAAGTCCTTTGAGCCATTACCATCACAACGTTCTTGCTCATACAGGTTACGATTTGAGGACATAGGTCGCTCTCTTAGATGTGAATGCATCGTGTCTGATGTTTTTGGAAGGTCAAGTGATCCAGTGTATGCTGAAACTCCTTCAGTTTCACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCCTCGGATGGATAAGCTGGACATTGAAGGTAGAGGTTTTCACACTAATCTGTATGCTGTTCGTGGCATTTATAGTGGCGGAAAGGAGGGCAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458515" ref_strand="+" ref_description="SGN-E458515 [cPRO-6-A7]">
      <seq>atgaagttgtagatgaagattacaattgtcgtttacttttcggatatacgccagttcgttcagattcaattattggtgaacatcagttatccgagccaactcatgtgattctcccagatattccaagaattgagacgctgactcttactgggaaggctgttgaaggagacatactaactgctgttgaaattattccaaagagtgaaattcaagagcgtgtatgggcaaagtataggaaggatatcaaatatacttgggtcatttcgactgaaacaggaaataataagtcctttgagccattaccatcacaacgttcttgctcatacaggttacgatttgaggacataggtcgctctcttagatgtgaatgcatcgtgtctgatgtttttggaaggtcaagtgatccagtgtatgctgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="54647" stop="57564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54947" g_stop="54989" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54990" i_stop="55239" i_length="250">
            <donor d_prob="0.272" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55240" g_stop="55313" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="117" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55314" i_stop="56581" i_length="1268">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56582" g_stop="56720" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="256" r_length="139" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56721" i_stop="57098" i_length="378">
            <donor d_prob="0.592" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57099" g_stop="57264" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="422" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E458515" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54947" e_stop="54989"/>
          <exon e_start="55240" e_stop="55313"/>
          <exon e_start="56582" e_stop="56720"/>
          <exon e_start="57099" e_stop="57264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTTGTAGATGAAGATTACAGTTGTCGTTTACTTTTCGGGTAACAGCTTCTCTAACTTTTGGACTGGATTTTGAAGTGTTTGGTTGTAAGATACAGGGGCATAGTAGTTGATGCTTATATATGCAGATGAATTTCTAGTCTTCTGCAGGAGTGTTTCTTCTGTTTTTTCTTTTTTGAATAATCTTGTTAAAGAAAAAATGAAAATAAACAAATGACACGAAAAAACTATAAAGAAGAGGTGCATGTATATTATCTTTTTCTTTCTAAAACATGTTACCAAAATTTGCAGATATACGCCAGTTCGTTCAGATTCAATTATTGGTGAACATCAGTTATCCGAGCCAACTCATGTGATTCTCCCAGGTATTTGTCTTATTATGGCATAAGGTAGTCGTCTATTTTGTCCATCATGTAGAGGTCCTTATGAATGGGTTGGTTTTGTACTAGTTTGAGATAGACACTGCTACTCTTCAACTTCACACAATTAAATGTTTTGGTGCCATTGTGACATTACAACAAATTTTAGAAGTAACTGAGAAATGAATATAAGAGAATGATGTACTGGTGACTGCTGAGTTGATAAATGCACCACAGACCTTTTTATAGGTGTTGTTGGAGTATAAAGTGAATACATGTCTATCTTCACACATATCTAGATTCACTGAATTTGAGCAAGTGAAATATCATTGTAGTCTATACTCTATATAGGATATGTCTGGATATTCTCTATTCAAGTATAGAGTACTTTCTAAAACTCCTCTGAGAATCCCTCTTGTACATTGTTGGTTAATCAAGTCTCTTCTCAGTGGTGGTGAAGCCACGTGGTTACCATTAGGTGAACTCACATTTTCCAATTTAAACTTTAGATTTTATTATAGGTAACTAGGTAATTAGTGAAAAGAGGATTCATAAATTAGTGAGCACCCATGATCATCAATCGACAAATGGTGCAGTGGTTAACAGACAGAAGTAGGAGGTGCAACTACCTCTGCATTCAGGGTACCACTCTTGTTTGATGAACTCTTTTTATGATTAGATCTTCTTTTAGTCCTTTTCTTCATTCATGGCTGATTCTTCTCTTCCTTTACTTGTATATTTCTTTTTGCCTCTCCTTTTTTCCCCCTTCTTTCACCACAGAGTGATGAAATCTGGGTTTTCCTTTCCTTATTCTTTTTCCTTTTACAAACACAAAGACACACTAGTCACCAAGTGAGGATGTCTAAAGGCTAGACCAGTAAAGCGAAAAATCTATTTACTTGCAAAGTCTAGCTCTATAAAAGTAAGTCATATTTATTGTTTCGAAAAAAATATAAAAACTCACCGCAGACAATTGCGAATACAATGACATGAGTATCGCGAGTACCATATAAGGAGACAACAGTTCCCTGAATCAACGTAGGACAATCTAACAGAAAAGAAGAGTTTTTCAATCTTCTACTACAATTCCAACAGTCCAACCTTTTGATTATCTGTCATATGTTTAGCTCAGCAAATATTCCTTTGTGGTTTTGCTTCTCTGTAGAGCATTCTTCATTTAAAATTTTTCCATTCACTATCTAGAATACTGACCTTTTCAATAATTGTGAAAAGTTTACTAAGGTCATTTTCTGACAGTGACGCTATGTCCACAGATATTCCAAGAATTGAGACGGTGGCTCTTACTGGGAAAGCTGTTGAAGGAGATATACTAACTGCTGTTGAAATTATTCCAAAGAGTGAAATTCAAGAGCGTGTATGGGCAAAATATAGGAAGGATATCAAATATACTTGGTACTTCTTTGTTTTCATCATTTGCTATCCTGGAATCAACTGTTTTTCCTTAATGGCTGATTATTGTTTACTGGATATTATTTCATGTCAAGTTAGACAGTGATAATATAGAGATGATTTCTCTTGCCACACTTGCTAATTTTTCTATATTCGGAGAAAAAGGAACCAAAAATTGCTCTAATATCTGGATATATGGAAGCACATATAGTTGGTGTTATCTTGATATGATTTACTTCTTGACTCTTATGTATAATTTACTGCATCCAAGATTGCAAACTGCAATTGAGTGATCTAGCATAATCCAGAGACTGCATTGCTTCTTGAGGTTCTATTGTAGAGTATATCGAGAAGCTTCTGATATTTTATTGGCTGCTGCAGGTTCATTTCGACTGAAACAGGAAATAATAAGTCCTTTGAGCCATTACCATCACAACGTTCTTGCTCATACAGGTTACGATTTGAGGACATAGGTCGCTCTCTTAGATGTGAATGCATCGTGTCTGATGTTTTTGGAAGGTCAAGTGATCCAGTGTATGCTGAAACT</genome_strand>
        <mrna_strand>ATGAAGTTGTAGATGAAGATTACAATTGTCGTTTACTTTTCGG..........................................................................................................................................................................................................................................................ATATACGCCAGTTCGTTCAGATTCAATTATTGGTGAACATCAGTTATCCGAGCCAACTCATGTGATTCTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCCAAGAATTGAGACGCTGACTCTTACTGGGAAGGCTGTTGAAGGAGACATACTAACTGCTGTTGAAATTATTCCAAAGAGTGAAATTCAAGAGCGTGTATGGGCAAAGTATAGGAAGGATATCAAATATACTTG..........................................................................................................................................................................................................................................................................................................................................................................................GGTCATTTCGACTGAAACAGGAAATAATAAGTCCTTTGAGCCATTACCATCACAACGTTCTTGCTCATACAGGTTACGATTTGAGGACATAGGTCGCTCTCTTAGATGTGAATGCATCGTGTCTGATGTTTTTGGAAGGTCAAGTGATCCAGTGTATGCTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557629" ref_strand="+" ref_description="SGN-E557629 [16459]">
      <seq>ctctcttagatgtgaatgcatcgtgtctgatgtttttggaaggtcaagtgatccagtgtatgctgaaactccttcagtttcaccaggtatccctcggatggataagctggacattgaaggtagaggttttcacaccaatctgtatgctgttcgtggcgtttatagtggcggaaaggagggcaaaagtaaaattcagtggcttagatctatggttggaagtcctgacctcatctccattcctggggagacaggaagaatgtatgaagctaatgttgatgacgtgggctataggctggttgtgatatatacaccagtaagagaagacggagttgaggggcatcctgtttctgcttctacagatccaattgcaattgagcctgatgttcttaaagaagtaaagcagaagcttgagactggttccgtaaagtttgaggccttgtgtgacaaggatcaatctacaaagaaagttccaggtatggggaatcttgaaagaagaattctagaagtcaacaaaaagagggtaaaggtggtgaagcctggttctaagacttcttttcccacaactgaggttcgaggaaacatatgcccctccattccacgtggagctgtccagaaatgatcaacaccgggctgangattgtggtggacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="56895" stop="64548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57195" g_stop="57280" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57281" i_stop="58405" i_length="1125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58406" g_stop="58561" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="242" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58562" i_stop="60626" i_length="2065">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60627" g_stop="60758" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="374" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60759" i_stop="61707" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61708" g_stop="61766" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="433" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61767" i_stop="62545" i_length="779">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62546" g_stop="62578" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="466" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62579" i_stop="62670" i_length="92">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62671" g_stop="62802" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="599" r_length="133" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62803" i_stop="64197" i_length="1395">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64198" g_stop="64248" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="651" r_length="52" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E557629" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57195" e_stop="57280"/>
          <exon e_start="58406" e_stop="58561"/>
          <exon e_start="60627" e_stop="60758"/>
          <exon e_start="61708" e_stop="61766"/>
          <exon e_start="62546" e_stop="62578"/>
          <exon e_start="62671" e_stop="62802"/>
          <exon e_start="64198" e_stop="64248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTAGATGTGAATGCATCGTGTCTGATGTTTTTGGAAGGTCAAGTGATCCAGTGTATGCTGAAACTCCTTCAGTTTCACCAGGTCTTGTAGCTCTTAATTCTAATCTTGTTTCCACTTGTATATACTTAAAGATAAACCATAATTGTGAGATGGGTATTGTTGCCGTGTGTGGAGTGTCCCGTACTGACATTCCTCTCTTGACATGAATTTGTAGCAGATTGTATTTTGGGTTTCCTTTGTTTCTTTCTTTTATTTTAAAATTTGGTTGTGGTCGGTGTTTGTATTAGGTGTATGGTCAAAAAGTGCAGTCACTCACTGTCACCATGTATTGTCTTTGGTTAGTTTGAGAAGAGGACAAGTGGGCAAGTAAAAGTGGAAGGTCATGATTTTCATCCCTCTATGATTTAGACAAAAAGGAGGAAGTACATCCTTTTCTTCAACTTCCTTCCCACTCCAAACAACCAAAATGTAAATGATCCATGCTTTATCCAACGAATGTAAGGAAATCAATGAGTTGGTCTACTTTTTACCCTTCTCTTTCCTTTTTAGTAAGCCAGGCATACTGTTCGATTTTGGATTGGTTACATTTCTTGCCAGCATTCCATTTCCTACAAGGCTTGAGTGCTTCTCACAGTTAGTTCAATATGCTTGGGAAAGTCCTCCGAAAGTATCAGCAACTTATGATTGATTTCTTATTTGTTTCACTCTGTTAAGAGGAAATTTGTTAATGCCTAAGGCAGAGCCTAAAATTGACATGCCATTTTAGTAATCTTCTGCAGCTTTCTTGTACGCCATTATTAATATTGGATACTATCTTTCGTGCTGATGGCTGCTGGAGTTTTTTTGATTATTGCCAGGCAGATACTTCAACTTAGTTTTAGCTCATTGAGTTTCTTTCATTCATTTTACTCATATATTTGTAAAATTTAGCCTAATTGGGCCAACATTAAATTTGCTGTTGTCCTTTACTTGATACTTCCCCCCTTGTGACTGGCTCATCCTTGTATGTGTTTCCCTCCCCTCTTCAGGCCAAGCATATTCTTCCTTGTTGATGTCTTAGCTTTAATATATCTTGAAATATTTCTTTTGACAAATTGAATAACCTAACTTGTTCCCTGGCATATCAATCATGTGGCCTGTTAGGTAATTCTAATAGTTTTATATAATTCTTATTATGGAGTTTATTTATGAATCTGCTTTTCTCAGGTATCCCTCGGATGGATAAGCTGGACATTGAAGGAAGAGGTTTTCACACCAATCTGTATGCTGTTCGTGGCGTTTATAGTGGCGGAAAGGAGGGCAAAAGCAAAATTCAGTGGCTTAGATCCATGGTTGGAAGTCCTGACCTCATCTCCATTCCTGGTATGCTAAAAAAATGTTCCATCTGATTTTGGTTTCTTAGCTCATTTCCATTTCTGTGTAGGACTAACATATCTTTTATAACTTTGCTTTTGGTTGATGCCAGCTATGCAAAACCTTCATTTAAAAAATGATTAGAGTTGCTGAAATTGTCTGATTCTCATGATAGATAGTGTGTGAACAAGGAGATTTTCCTTGGTGCAGGATGTTTTACAACATGTCTTCTTTCCACTCAGTTGTGTCCATGCAGAACTAATAAAAAGAAAAAGTTTTACTGTCTTAAGAGTAAAGGGAGAAACAAGTTGTGCAGATGCAAATATTTAATGCTTCGACAGTAAGGTTCCTCTGATCCTTACTATGATCTGAAGTGTTAAGGGAACTAAAATTTTGCACCTTCCCAATGCTATACATCTTGCTGGAGCTCTGTAAATTTGAGCATTTTATAACTCTTAAGGTATTCGATGGAGGTTCATCTTTTATATCTGTTAGTTTTCAAGTATAATTCCCCATTGATCACCCAATTATGGAGATAGTGTCATTTGAATATATTTGATTACACCAAAAACATAATAGTAAAAGGCAGTTTAGCGTAATCTTTTGCATACTATTCTCTATGCTATCAAAACATCTAGCATTTTTTTCCTTCCAAATTGTCCACCAGATACAAGCAGGGACAATTCTCCATCTATCTCTGTTTTTTGCTTGCACACCAGCTTCCTCCCAGCTCTGGATTGCTTCGGTAATCTTTCCAGGCATAGCCCATGAGATGCCTCTGAGATCTAAGAAAATCCTCCATAGCTGTCCAGTGACTTTGCAATGAAGAAATAGATGATTAACTGTCTCAGCCTTTTCTCCACAAAAAAAAAAACAAACACCTAGGACAACGTGGTATCCCTCTCCTCATCAGATTGTCTTGGGTGAGAGTTGTTTACTTGGCTAGCAACCAGATAAGGCAGGCCACTTTGTGTGGAATTTTGTTTTTCCAGATGCCTTTCCATGGCCAGTTGCTTATGCATTGAGGTGTTTGATTCATCCACCTATAAGCGTTACTTACTTTGATGGTGTATTTAAGAAATCTGCAACTCTTTGGATCTCCCATCATTTAGAAGCCTTCTAGGGTTGAATCTCCATCCATGGGGTGTCCAAACTTCTACAATAGACTTTTGTTGGTGAGAGACTAATGCATGAATATCTGGGAACAAATTTCCAGTCTTCCTGACTCACGCCATTCATCTTTCCAAAAATCGGTTTTATTGCTGGATGAAACTACACTGAAGAAGAGGAAAAGAGTGAGCTATCAGTAAGGTGATAACTCAGGTTAGATGAGAAATTAAGGCGGAGAACTGCGGCAGAAACCTACCCCAGAGAGAGTGATCACTCCTCTCCTAGGAAGTAGGAGAGTGTTTTTGGAGAATGTGCTTGAGAGCATTTTTTACCTAACAGATTATATTTGATTTAGTACTTTGCTGTATTATTTACGTGGTCCACTGCATCTGTTTCACTTGCGGCAGAGTTCACTGAGAAAGTAAGCATCAGAAGAGGGTAACACGAAAATAACTCACATCTATTTGACAGGATTCAAAGATTCAAACTATCTATTCCCTCCATTTAAAAAAGAGTGACCTGGTTTGACTTGACACGAAGTTTTAGAAAACAAAGAAGACTTTTGAATCTTGTGGTCCTAAAATTAAAGTTATGTCAAATGTACTAAATTGCTCTTCAACCTTGTGGCTTTAAACATGCCATGTGGCAAGCTGAAAGCAAAATGTTACTAAAAAAGGAAAGAGGTCATCCTTTTTTAAACGGAGGGAGTATCTATTAGAGGGTAACAAGAAAATAAATATCTAGTAGACAAGATTCAAACTACCAATTTATTTAGACTATTACTTTGTCACCTTTCAAGCAATTAAACCTTTGGTGTAGGAAACTATTGTTTCAAAACCGAATAATGGGTGAACTAGTTCTTGAACATTTATATATTTTGTCCTTTATATTTGGAAATCTCATCTATGCATAGCACCATGTAAAATTGATAGGAACTTTCTAAAAGAAGATGGTTTTGTTGCAGGGGAGACAGGAAGAATGTATGAAGCTAATGTTGATGACGTGGGTTATAGGCTGGTCGTGATATATACACCAGTAAGAGAAGACGGAGTTGAGGGGCATCCTGTTTCTGCTTCTACAGATCCAATTGCAATTGGTAAATAATCGTGTAGAACATTCGTACAGTAATTTTATGATGAGTTATTTTTTATTGATCGTTAATTTTATAAGGATTCTTTTAGTAGCTGATTACAGTTTCTTTGGCTTTTTTGTTGATAAAGGTAACATCAGTTTTTTTGGATTTTTTGAATGCAATTATCTTTCCTGTATCTTTCCATCTATTTCTGTGTCTTGAATATAATTCTAATTAGCATAAGTTTATGATGATGGATGATAGCTGTAAATACTTGACTTTCCCAATCACATAAGTAGCATTTTTCTTGCTGAACCTGTGCAAGCTTGTTAATCAAATACTCTTCTCCCATTGAAGTTCATGAGATCTGGCAGATTCTCTTTGTTCTGTTGGCACATATTGAACATATACTTCAGGTGTAAGAAGTATTATTGGTAAAAACAGGTAGGATTATATGGAAGTACTGAAACTTCGACTTTATAAGGATCCACTAAGTTCTCCAAGAAGTGAAAAAACCTCATCAAATGTCAATTTGGTATTGTTGCACCAGTCCTGGATAAGTGAGTCTTCAGACACTTTGGTGTATTAGCATGTAAATCACTATACTGACTCTTCCGCTCACTTTTTGTTCCATAGAAGCCATCTTAATATTAAGTAGTCCACCATTCATTCTTGTAGTTTAAGTTTCTAAATTGGCAGTATTACCAATATAACCTTGATCATTCTCATCAAGTTTAACTCCAGTGTCTGAGTGGACATTGGTAAAATCAAAACCTATAAAACAACGGAGGGAAGAAAAATATTTCAACGGAAAATGAAATCATTTGTTTGCTCTTTTGGTTATTATCTTAATGATTTTGGGCTACCTCGACATATGTATCTTACTGAGATATTTTTTCTTTCACATTGATGTCTTTGTATCTTCTTTATCAACTGTTCATGTTTGGCTTTATTCTCCTTTTCCTCATTGCAGAGCCTGATGTTCTTAAAGAAGTAAAGCAGAAGCTTGAGACTGGTTCTGTAAAGTTTGAGGTGATACATCTCTTGAAATAATTTCCCAGATCTTGTTGTGTGTGATGACTTCTTTTTCACCTTTTGAACTTCCCTACAACGCCTTGTTTTTACATAAATCCATATGAATCGTTTGAAAGTTTGGGATTTAATTTAATGAAAGTTGTTTGTGGTTCACCAGCTATCAACACTATAGTTAAAAGTATTAAAATAGGTATTAATCATTCTATAAAAGTAAATGAATGTCTCCTTGGGAGAAGCTTCAGCCTTTAGATATGGTAAAATTAATTATTTAACAGTGCATGTCAAGCTTGTATTCTAAAATATATCTCTGCTCTCTAACATAAAACAAAAACCACAAGGGAAATTGATAAAAGAAGGACGGGGGTTGTGATAAAGCCTGTATAATGTCATTAAAGGATGTTTAAGTTGCTAAAGATGAATGTAATCATCAAAATTCAAACATCTGCTTGCGAGCAAAGGGCTTCAAGTTCCCGAATCAAATATGCTGTAGATTGTCCAAAGCAATGATATTATATTGATGAAAAATTTGTAATTGCTTGAGCGTATCTAGTTTTTCTCCAAGGCATTGAAGTGGTGAGGCTCTGTCTGTTTGTTTTAGCACCTTTTCAATTCAAATAAGATTGGCTCACATCTTGCATTAGACTGCATCTCTGGAATTTAAATTAGTTTGGTATCACATCTCATCATCAGTTGTTTATGTTTGCAGCATTATATATATATATATTTATATGAATATATAGGTGTTTACATAAATTACTTTGATGTCATTAATGCAGGCCTTGTGTGACAAGGATCAATCTACAAAGAAAGTTAGTGTCTTTTAATTCATTATTCAATTTCAGTTTCCAAATCATATGTAAGAAAGATGAGGGATAAACTAATTATAGTTGCAAATTTGCAGGTTCCAGCTATGGGGAATCTTGAAAGAAGAATTCTGGAAGTCAACAAAAAGAGGGTAAAGGTGGTGAAGCCTGGTTCTAAGACTTCTTTTCCCACAACTGAGGTTCGAGG-AACATATGCCCCTCCATTCCACGTAAGTAAATCTATATCTGACTTCCGATTTTTGTTTTAAATATAGGTTTGGACATATGCCTCCGAAGGGATTACTGAAATTTGTAAATTGATGAAACAATAAAGAAAATGTAGAGGGAGAAGATGACTTAATTAAAATTTGAGTAACAACTTGTATTTACAAAGAGATATGAGCCTAGTATATATACTAGTTACATTTTCACTAACCGACTTCTCTTGATCTCAACAAGCTAACTAACTATAAGCTTTTGACTTGTAACAAAGTGTTGAGTAGTAGAAGCTTCTATTGAACTAGTTACAATTAGCCTCTTAATATTTATATCTCAACAACTTCCTCAATCATTTCTCTACCACTTTTTCATGATAGTAGAATTGTTTGAGAATCACATATGTTACCTAGGCCTACTATCCTCTTGGAAAATAATTTTTTGTTGATATATGTTCTCATACAACGTTGGAGTGGCAAGACACTACAAACTAACTAAACCGCACTAGGATATTCTCTTGGATGCTATGCCTTCACTATTGCTCATTCAGACTTGTGGTTGATTCATGAGCATGGCGTAGTACCCTATTATGGTGTCCTAAATATCCATACTAGAGTGGCAAAATCAGTCTGCCTGTAAGTCCACGGGCTGTGTAATTTTACAGGCTTGGGCAGATCTTGAATGTTCGAGGTGCCTTTGGGTTTTCCTGAACGTTTCCTCTGGCAACAAGCTTTTGAACCCTAGTGGATTGAGAACACATGCACTTGTTGAAGTTTTTTTTGTTTTTTTTTCAACTTTTCGCCATAAAACAATTACTCTATCAGATGTTATCCATAGTATTTTATGAGTCTTATGTATTTAACTGATGTTGCATGGTTCTCCTATGAAAAAACAGAGAACTGATGAGCATAGCCTGGATTTATCTAATTGGGCATTAACATCACTGTTGAAGAGGCTCACATCCTGCATTCAGAAGACCTTAGATATATGCTGTTCTCATTAGAAAGATTATGTGCTATAAGCCATTCAGTGGTAAAGGTTCAGATAGCACTCAAGAGTATGACCTAGTTAGGTCACTGTAGTGGGTGCAAACCTTAAAAGTAAAGTTCCAAATTCCAGTAGAGATGAAAATCACTAGGTTGTTTCTTCACATCTGCTCGAGTCTTGAATAGTGTACGAAGTTATCTGACACCTGTGTTGGTGACTAGTAGAATAATTCATGATGCGCAAAAGATGGTCGTAAGAACACCAGTACCAAAAAGGAAGTAAAAGGTCCATATGCTAGTTCAATAAATGACAGTTCAGTTTGTTTCCAATCTAGAAGCATGTACTCAAATAGGTTGTTTTAGGAAATTCAAGGCATAACAGTCGGAGTTTAAGATTAACTCTTCATCCATGCCATTGTACAGGTGGAGCTGTTCCGAAATGATCAACACC-GGTTGAGGATTGTGGTGGACAGT</genome_strand>
        <mrna_strand>CTCTCTTAGATGTGAATGCATCGTGTCTGATGTTTTTGGAAGGTCAAGTGATCCAGTGTATGCTGAAACTCCTTCAGTTTCACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCCTCGGATGGATAAGCTGGACATTGAAGGTAGAGGTTTTCACACCAATCTGTATGCTGTTCGTGGCGTTTATAGTGGCGGAAAGGAGGGCAAAAGTAAAATTCAGTGGCTTAGATCTATGGTTGGAAGTCCTGACCTCATCTCCATTCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGACAGGAAGAATGTATGAAGCTAATGTTGATGACGTGGGCTATAGGCTGGTTGTGATATATACACCAGTAAGAGAAGACGGAGTTGAGGGGCATCCTGTTTCTGCTTCTACAGATCCAATTGCAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTGATGTTCTTAAAGAAGTAAAGCAGAAGCTTGAGACTGGTTCCGTAAAGTTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGTGTGACAAGGATCAATCTACAAAGAAA............................................................................................GTTCCAGGTATGGGGAATCTTGAAAGAAGAATTCTAGAAGTCAACAAAAAGAGGGTAAAGGTGGTGAAGCCTGGTTCTAAGACTTCTTTTCCCACAACTGAGGTTCGAGGAAACATATGCCCCTCCATTCCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGCTGTCCAGAAATGATCAACACCGGGCTGANGATTGTGGTGGACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464484" ref_strand="+" ref_description="SGN-E464484 [cPRO-18-K9]">
      <seq>ggcaaaagtaaaattcagtggcttagatctatggttggaagtcctgacctcatctccattcctggggagacaggaagaatgtatgaagctaatgttgatgacgtgggttataggctggttgtgatatatacaccagtaagagaagacggagttgaggggcatcctgtttctgcttctacagatccaattgcaattgagcctgatgttcttaaagaagtaaagcagaagcttgagactggttccgtaaagtttgaggccttgtgtgacaaggatcaatctacaaagaaagttccaggtatggggaatcttgaaagaagaattctggaagtcaacaaaaagagggtaaaggtggtgaagcctggttctaagacttcttttcccacaactgaggttcgaggaacatatgcccctccattccacgtggagctgttccgaaatgatcaacaccggctgaggattgtggtggacagtgagagtgaagtggatttgctggtacagactcggcacctccgtgatattgtcgtccttgtcatccgaggtcttgcacagaggtttaacagcacctcactcaattcccttctcaagatagagacctagcgtcatatcatgttccttgttttgtacattagttggtctttttctgtctctaactccagtagtttggtgttggtttttgtttctgttttctggtgaggtattgagtttcatctggctatgcgttttgcttctttcatttgtttnctattgngcctatgtaagttagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="58198" stop="64844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58498" g_stop="58561" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58562" i_stop="60626" i_length="2065">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60627" g_stop="60758" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="196" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60759" i_stop="61707" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61708" g_stop="61766" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="255" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61767" i_stop="62545" i_length="779">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62546" g_stop="62578" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="288" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62579" i_stop="62670" i_length="92">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62671" g_stop="62802" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="420" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62803" i_stop="64197" i_length="1395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64198" g_stop="64544" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="767" r_length="347" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E464484" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58498" e_stop="58561"/>
          <exon e_start="60627" e_stop="60758"/>
          <exon e_start="61708" e_stop="61766"/>
          <exon e_start="62546" e_stop="62578"/>
          <exon e_start="62671" e_stop="62802"/>
          <exon e_start="64198" e_stop="64544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAAGCAAAATTCAGTGGCTTAGATCCATGGTTGGAAGTCCTGACCTCATCTCCATTCCTGGTATGCTAAAAAAATGTTCCATCTGATTTTGGTTTCTTAGCTCATTTCCATTTCTGTGTAGGACTAACATATCTTTTATAACTTTGCTTTTGGTTGATGCCAGCTATGCAAAACCTTCATTTAAAAAATGATTAGAGTTGCTGAAATTGTCTGATTCTCATGATAGATAGTGTGTGAACAAGGAGATTTTCCTTGGTGCAGGATGTTTTACAACATGTCTTCTTTCCACTCAGTTGTGTCCATGCAGAACTAATAAAAAGAAAAAGTTTTACTGTCTTAAGAGTAAAGGGAGAAACAAGTTGTGCAGATGCAAATATTTAATGCTTCGACAGTAAGGTTCCTCTGATCCTTACTATGATCTGAAGTGTTAAGGGAACTAAAATTTTGCACCTTCCCAATGCTATACATCTTGCTGGAGCTCTGTAAATTTGAGCATTTTATAACTCTTAAGGTATTCGATGGAGGTTCATCTTTTATATCTGTTAGTTTTCAAGTATAATTCCCCATTGATCACCCAATTATGGAGATAGTGTCATTTGAATATATTTGATTACACCAAAAACATAATAGTAAAAGGCAGTTTAGCGTAATCTTTTGCATACTATTCTCTATGCTATCAAAACATCTAGCATTTTTTTCCTTCCAAATTGTCCACCAGATACAAGCAGGGACAATTCTCCATCTATCTCTGTTTTTTGCTTGCACACCAGCTTCCTCCCAGCTCTGGATTGCTTCGGTAATCTTTCCAGGCATAGCCCATGAGATGCCTCTGAGATCTAAGAAAATCCTCCATAGCTGTCCAGTGACTTTGCAATGAAGAAATAGATGATTAACTGTCTCAGCCTTTTCTCCACAAAAAAAAAAACAAACACCTAGGACAACGTGGTATCCCTCTCCTCATCAGATTGTCTTGGGTGAGAGTTGTTTACTTGGCTAGCAACCAGATAAGGCAGGCCACTTTGTGTGGAATTTTGTTTTTCCAGATGCCTTTCCATGGCCAGTTGCTTATGCATTGAGGTGTTTGATTCATCCACCTATAAGCGTTACTTACTTTGATGGTGTATTTAAGAAATCTGCAACTCTTTGGATCTCCCATCATTTAGAAGCCTTCTAGGGTTGAATCTCCATCCATGGGGTGTCCAAACTTCTACAATAGACTTTTGTTGGTGAGAGACTAATGCATGAATATCTGGGAACAAATTTCCAGTCTTCCTGACTCACGCCATTCATCTTTCCAAAAATCGGTTTTATTGCTGGATGAAACTACACTGAAGAAGAGGAAAAGAGTGAGCTATCAGTAAGGTGATAACTCAGGTTAGATGAGAAATTAAGGCGGAGAACTGCGGCAGAAACCTACCCCAGAGAGAGTGATCACTCCTCTCCTAGGAAGTAGGAGAGTGTTTTTGGAGAATGTGCTTGAGAGCATTTTTTACCTAACAGATTATATTTGATTTAGTACTTTGCTGTATTATTTACGTGGTCCACTGCATCTGTTTCACTTGCGGCAGAGTTCACTGAGAAAGTAAGCATCAGAAGAGGGTAACACGAAAATAACTCACATCTATTTGACAGGATTCAAAGATTCAAACTATCTATTCCCTCCATTTAAAAAAGAGTGACCTGGTTTGACTTGACACGAAGTTTTAGAAAACAAAGAAGACTTTTGAATCTTGTGGTCCTAAAATTAAAGTTATGTCAAATGTACTAAATTGCTCTTCAACCTTGTGGCTTTAAACATGCCATGTGGCAAGCTGAAAGCAAAATGTTACTAAAAAAGGAAAGAGGTCATCCTTTTTTAAACGGAGGGAGTATCTATTAGAGGGTAACAAGAAAATAAATATCTAGTAGACAAGATTCAAACTACCAATTTATTTAGACTATTACTTTGTCACCTTTCAAGCAATTAAACCTTTGGTGTAGGAAACTATTGTTTCAAAACCGAATAATGGGTGAACTAGTTCTTGAACATTTATATATTTTGTCCTTTATATTTGGAAATCTCATCTATGCATAGCACCATGTAAAATTGATAGGAACTTTCTAAAAGAAGATGGTTTTGTTGCAGGGGAGACAGGAAGAATGTATGAAGCTAATGTTGATGACGTGGGTTATAGGCTGGTCGTGATATATACACCAGTAAGAGAAGACGGAGTTGAGGGGCATCCTGTTTCTGCTTCTACAGATCCAATTGCAATTGGTAAATAATCGTGTAGAACATTCGTACAGTAATTTTATGATGAGTTATTTTTTATTGATCGTTAATTTTATAAGGATTCTTTTAGTAGCTGATTACAGTTTCTTTGGCTTTTTTGTTGATAAAGGTAACATCAGTTTTTTTGGATTTTTTGAATGCAATTATCTTTCCTGTATCTTTCCATCTATTTCTGTGTCTTGAATATAATTCTAATTAGCATAAGTTTATGATGATGGATGATAGCTGTAAATACTTGACTTTCCCAATCACATAAGTAGCATTTTTCTTGCTGAACCTGTGCAAGCTTGTTAATCAAATACTCTTCTCCCATTGAAGTTCATGAGATCTGGCAGATTCTCTTTGTTCTGTTGGCACATATTGAACATATACTTCAGGTGTAAGAAGTATTATTGGTAAAAACAGGTAGGATTATATGGAAGTACTGAAACTTCGACTTTATAAGGATCCACTAAGTTCTCCAAGAAGTGAAAAAACCTCATCAAATGTCAATTTGGTATTGTTGCACCAGTCCTGGATAAGTGAGTCTTCAGACACTTTGGTGTATTAGCATGTAAATCACTATACTGACTCTTCCGCTCACTTTTTGTTCCATAGAAGCCATCTTAATATTAAGTAGTCCACCATTCATTCTTGTAGTTTAAGTTTCTAAATTGGCAGTATTACCAATATAACCTTGATCATTCTCATCAAGTTTAACTCCAGTGTCTGAGTGGACATTGGTAAAATCAAAACCTATAAAACAACGGAGGGAAGAAAAATATTTCAACGGAAAATGAAATCATTTGTTTGCTCTTTTGGTTATTATCTTAATGATTTTGGGCTACCTCGACATATGTATCTTACTGAGATATTTTTTCTTTCACATTGATGTCTTTGTATCTTCTTTATCAACTGTTCATGTTTGGCTTTATTCTCCTTTTCCTCATTGCAGAGCCTGATGTTCTTAAAGAAGTAAAGCAGAAGCTTGAGACTGGTTCTGTAAAGTTTGAGGTGATACATCTCTTGAAATAATTTCCCAGATCTTGTTGTGTGTGATGACTTCTTTTTCACCTTTTGAACTTCCCTACAACGCCTTGTTTTTACATAAATCCATATGAATCGTTTGAAAGTTTGGGATTTAATTTAATGAAAGTTGTTTGTGGTTCACCAGCTATCAACACTATAGTTAAAAGTATTAAAATAGGTATTAATCATTCTATAAAAGTAAATGAATGTCTCCTTGGGAGAAGCTTCAGCCTTTAGATATGGTAAAATTAATTATTTAACAGTGCATGTCAAGCTTGTATTCTAAAATATATCTCTGCTCTCTAACATAAAACAAAAACCACAAGGGAAATTGATAAAAGAAGGACGGGGGTTGTGATAAAGCCTGTATAATGTCATTAAAGGATGTTTAAGTTGCTAAAGATGAATGTAATCATCAAAATTCAAACATCTGCTTGCGAGCAAAGGGCTTCAAGTTCCCGAATCAAATATGCTGTAGATTGTCCAAAGCAATGATATTATATTGATGAAAAATTTGTAATTGCTTGAGCGTATCTAGTTTTTCTCCAAGGCATTGAAGTGGTGAGGCTCTGTCTGTTTGTTTTAGCACCTTTTCAATTCAAATAAGATTGGCTCACATCTTGCATTAGACTGCATCTCTGGAATTTAAATTAGTTTGGTATCACATCTCATCATCAGTTGTTTATGTTTGCAGCATTATATATATATATATTTATATGAATATATAGGTGTTTACATAAATTACTTTGATGTCATTAATGCAGGCCTTGTGTGACAAGGATCAATCTACAAAGAAAGTTAGTGTCTTTTAATTCATTATTCAATTTCAGTTTCCAAATCATATGTAAGAAAGATGAGGGATAAACTAATTATAGTTGCAAATTTGCAGGTTCCAGCTATGGGGAATCTTGAAAGAAGAATTCTGGAAGTCAACAAAAAGAGGGTAAAGGTGGTGAAGCCTGGTTCTAAGACTTCTTTTCCCACAACTGAGGTTCGAGGAACATATGCCCCTCCATTCCACGTAAGTAAATCTATATCTGACTTCCGATTTTTGTTTTAAATATAGGTTTGGACATATGCCTCCGAAGGGATTACTGAAATTTGTAAATTGATGAAACAATAAAGAAAATGTAGAGGGAGAAGATGACTTAATTAAAATTTGAGTAACAACTTGTATTTACAAAGAGATATGAGCCTAGTATATATACTAGTTACATTTTCACTAACCGACTTCTCTTGATCTCAACAAGCTAACTAACTATAAGCTTTTGACTTGTAACAAAGTGTTGAGTAGTAGAAGCTTCTATTGAACTAGTTACAATTAGCCTCTTAATATTTATATCTCAACAACTTCCTCAATCATTTCTCTACCACTTTTTCATGATAGTAGAATTGTTTGAGAATCACATATGTTACCTAGGCCTACTATCCTCTTGGAAAATAATTTTTTGTTGATATATGTTCTCATACAACGTTGGAGTGGCAAGACACTACAAACTAACTAAACCGCACTAGGATATTCTCTTGGATGCTATGCCTTCACTATTGCTCATTCAGACTTGTGGTTGATTCATGAGCATGGCGTAGTACCCTATTATGGTGTCCTAAATATCCATACTAGAGTGGCAAAATCAGTCTGCCTGTAAGTCCACGGGCTGTGTAATTTTACAGGCTTGGGCAGATCTTGAATGTTCGAGGTGCCTTTGGGTTTTCCTGAACGTTTCCTCTGGCAACAAGCTTTTGAACCCTAGTGGATTGAGAACACATGCACTTGTTGAAGTTTTTTTTGTTTTTTTTTCAACTTTTCGCCATAAAACAATTACTCTATCAGATGTTATCCATAGTATTTTATGAGTCTTATGTATTTAACTGATGTTGCATGGTTCTCCTATGAAAAAACAGAGAACTGATGAGCATAGCCTGGATTTATCTAATTGGGCATTAACATCACTGTTGAAGAGGCTCACATCCTGCATTCAGAAGACCTTAGATATATGCTGTTCTCATTAGAAAGATTATGTGCTATAAGCCATTCAGTGGTAAAGGTTCAGATAGCACTCAAGAGTATGACCTAGTTAGGTCACTGTAGTGGGTGCAAACCTTAAAAGTAAAGTTCCAAATTCCAGTAGAGATGAAAATCACTAGGTTGTTTCTTCACATCTGCTCGAGTCTTGAATAGTGTACGAAGTTATCTGACACCTGTGTTGGTGACTAGTAGAATAATTCATGATGCGCAAAAGATGGTCGTAAGAACACCAGTACCAAAAAGGAAGTAAAAGGTCCATATGCTAGTTCAATAAATGACAGTTCAGTTTGTTTCCAATCTAGAAGCATGTACTCAAATAGGTTGTTTTAGGAAATTCAAGGCATAACAGTCGGAGTTTAAGATTAACTCTTCATCCATGCCATTGTACAGGTGGAGCTGTTCCGAAATGATCAACACCGGTTGAGGATTGTGGTGGACAGTGAGAGTGAAGTGGATTTGCTGGTACAGACTCGGCACCTCCGTGATATCGTCGTCCTTGTCATCCGAGGTCTTGCACAGAGGTTTAACAGCACCTCACTCAATTCCCTTCTCAAGATAGAGAATTAGCATCATATCATGTTCCTTGTTATGTACATTAGTTGGTCTTTTTCTGTCTCTAACTCCAGTAGTTTGGTGTTGATTTTTGTTTCTGTTTTCTGGTGAGGTATTGAGTTTCATCTGGCTATGCATTTTGCTTCTTTCATTTGTTTCTTATTATGCCTATGTAAGTCAGCTTG</genome_strand>
        <mrna_strand>GGCAAAAGTAAAATTCAGTGGCTTAGATCTATGGTTGGAAGTCCTGACCTCATCTCCATTCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGACAGGAAGAATGTATGAAGCTAATGTTGATGACGTGGGTTATAGGCTGGTTGTGATATATACACCAGTAAGAGAAGACGGAGTTGAGGGGCATCCTGTTTCTGCTTCTACAGATCCAATTGCAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTGATGTTCTTAAAGAAGTAAAGCAGAAGCTTGAGACTGGTTCCGTAAAGTTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGTGTGACAAGGATCAATCTACAAAGAAA............................................................................................GTTCCAGGTATGGGGAATCTTGAAAGAAGAATTCTGGAAGTCAACAAAAAGAGGGTAAAGGTGGTGAAGCCTGGTTCTAAGACTTCTTTTCCCACAACTGAGGTTCGAGGAACATATGCCCCTCCATTCCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGCTGTTCCGAAATGATCAACACCGGCTGAGGATTGTGGTGGACAGTGAGAGTGAAGTGGATTTGCTGGTACAGACTCGGCACCTCCGTGATATTGTCGTCCTTGTCATCCGAGGTCTTGCACAGAGGTTTAACAGCACCTCACTCAATTCCCTTCTCAAGATAGAGACCTAGCGTCATATCATGTTCCTTGTTTTGTACATTAGTTGGTCTTTTTCTGTCTCTAACTCCAGTAGTTTGGTGTTGGTTTTTGTTTCTGTTTTCTGGTGAGGTATTGAGTTTCATCTGGCTATGCGTTTTGCTTCTTTCATTTGTTTNCTATTGNGCCTATGTAAGTTAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611976" ref_strand="+" ref_description="SGN-E611976 [61733]">
      <seq>ctcctcgttcgtcgttactatgtgagtggtgtgaccacaaacgcaaaccgcaacaagctaattatatgcctattactcatcctcgggtcctcaatcgccacagctgcttactggggacttagcgagaaaggatggattgcatactgctttactctgcctatttggttttcagcaactgcaggaatttgtattttcattcctcaggctcgtaatccaaagctttggggtgtgcctcttgtaccttggttgccatcattatcaatagctatcaacattttcctactaggctcgatagataaagattcattcatcagatttgctggctggacaggttttcttttggcgtattacttctttttcgggctacatgcttcttatgacacagcaaaggaattcgaaaagagcaaagggtggaagaacaatattgaagaaggaaatggtacttctaatgtggttgttagcaaagatgttcctattgctcctgttgcttctggtaactgaattagttgtgtctaaatgatagtacaatgttacattcctagctagtcctcctattttatttgtcttgatatatgcatatgatgttagtccgtttgtacagagtctgtttctaaactagacaagtacaagttgctgcattgtactaggtattaaacattgtgcagactatcttacgatggctttgtacccttctggcatatgccgctttggattataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="72536" stop="71242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72236" g_stop="71542" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E611976" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72236" e_stop="71542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCGTTCGCCGTTACTATGTGAGTGGTGTGACCACAAACGCAAACCGCAACAAGCTAATTATATGCATATTGCTCATCCTCGGGTCCTCAATCGCCACAGCTGCTTACTGGGGACTTAGTGAGAAAGGATGGATTGGATACTGCTTCACTGTGCCTATTTGGGTTTCAGCAACTGCAGGGATTTGTATTTTCATTCCTCAGGCTCGTAATCCTAAGCTTTGGGGTGTGCCTCTTGTGCCTTGGTTGCCATCATTATCGATAGCTATCAACATTTTCCTACTAGGCTCGATAGATAAAGATTCGTTCATCAGATTTGCTGGCTGGACAGGTTTTCTTTTGGCGTATTACTTCTTTTTCGGGCTGCATGCTTCTTATGACACAGCAAAGGAATTTGAAAAGAGCAAAGGGTGGAAGAACAACATTGAAGAAGGAAAGGGTACTTCTAATGTGGTTGTTAGCAAAGATGTTCCTATTG---C---T-C--CTGGTAACTGAATTAGTTGTGTCTAAATGATAGCACAATGTTACGTTCCTAGCTAGTACTCTTATTTTATTTGTCTTGATATATGCCTATGATGTTAGTCCGTTTGTACAGAGTCCGTTTCTAAAGTAGACAAGTAAAAGTTGCTGCATTGTTCTA-GTATTGAACATTGTGCAGACTATCTTACGATGGCTTTGTACCCTTCTGGCGTATGCCG</genome_strand>
        <mrna_strand>CTCCTCGTTCGTCGTTACTATGTGAGTGGTGTGACCACAAACGCAAACCGCAACAAGCTAATTATATGCCTATTACTCATCCTCGGGTCCTCAATCGCCACAGCTGCTTACTGGGGACTTAGCGAGAAAGGATGGATTGCATACTGCTTTACTCTGCCTATTTGGTTTTCAGCAACTGCAGGAATTTGTATTTTCATTCCTCAGGCTCGTAATCCAAAGCTTTGGGGTGTGCCTCTTGTACCTTGGTTGCCATCATTATCAATAGCTATCAACATTTTCCTACTAGGCTCGATAGATAAAGATTCATTCATCAGATTTGCTGGCTGGACAGGTTTTCTTTTGGCGTATTACTTCTTTTTCGGGCTACATGCTTCTTATGACACAGCAAAGGAATTCGAAAAGAGCAAAGGGTGGAAGAACAATATTGAAGAAGGAAATGGTACTTCTAATGTGGTTGTTAGCAAAGATGTTCCTATTGCTCCTGTTGCTTCTGGTAACTGAATTAGTTGTGTCTAAATGATAGTACAATGTTACATTCCTAGCTAGTCCTCCTATTTTATTTGTCTTGATATATGCATATGATGTTAGTCCGTTTGTACAGAGTCTGTTTCTAAACTAGACAAGTACAAGTTGCTGCATTGTACTAGGTATTAAACATTGTGCAGACTATCTTACGATGGCTTTGTACCCTTCTGGCATATGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357817" ref_strand="+" ref_description="SGN-E357817 [cTOS-24-C6]">
      <seq>ttactatgtgagtggtgtgaccacaaacacaaaccgcaacaagctaattatatgcatattgctcatcctcgggtcctcaatcgccacagctgcttactggggacttagtgagaaaggatggattggatactgcttcactgtgcctatttgggtttcagcaactgcagggatttgtattttcattcctcaggctcgtaatcctaagctttggggtgtgcctcttgtgccttggttgccatcattatcgatagctatcaacattttcctactaggctcgatagataaagattcgttcatcagatttgctggctggacaggttttcttttggcgtattacttctttttcgggctgcatgcttcttatgacacagcaaaggaatttgaaaagagcaaagggtggaagaacaatattgaagaaggaaagggtacttctaatgtggttgttagcaaagatgttcctattgctcctggtaactgaattagttgtgtctaaatgatagcacaatgttacgttcctagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="72522" stop="71402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72222" g_stop="71702" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E357817" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72222" e_stop="71702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTATGTGAGTGGTGTGACCACAAACGCAAACCGCAACAAGCTAATTATATGCATATTGCTCATCCTCGGGTCCTCAATCGCCACAGCTGCTTACTGGGGACTTAGTGAGAAAGGATGGATTGGATACTGCTTCACTGTGCCTATTTGGGTTTCAGCAACTGCAGGGATTTGTATTTTCATTCCTCAGGCTCGTAATCCTAAGCTTTGGGGTGTGCCTCTTGTGCCTTGGTTGCCATCATTATCGATAGCTATCAACATTTTCCTACTAGGCTCGATAGATAAAGATTCGTTCATCAGATTTGCTGGCTGGACAGGTTTTCTTTTGGCGTATTACTTCTTTTTCGGGCTGCATGCTTCTTATGACACAGCAAAGGAATTTGAAAAGAGCAAAGGGTGGAAGAACAACATTGAAGAAGGAAAGGGTACTTCTAATGTGGTTGTTAGCAAAGATGTTCCTATTGCTCCTGGTAACTGAATTAGTTGTGTCTAAATGATAGCACAATGTTACGTTCCTAGCT</genome_strand>
        <mrna_strand>TTACTATGTGAGTGGTGTGACCACAAACACAAACCGCAACAAGCTAATTATATGCATATTGCTCATCCTCGGGTCCTCAATCGCCACAGCTGCTTACTGGGGACTTAGTGAGAAAGGATGGATTGGATACTGCTTCACTGTGCCTATTTGGGTTTCAGCAACTGCAGGGATTTGTATTTTCATTCCTCAGGCTCGTAATCCTAAGCTTTGGGGTGTGCCTCTTGTGCCTTGGTTGCCATCATTATCGATAGCTATCAACATTTTCCTACTAGGCTCGATAGATAAAGATTCGTTCATCAGATTTGCTGGCTGGACAGGTTTTCTTTTGGCGTATTACTTCTTTTTCGGGCTGCATGCTTCTTATGACACAGCAAAGGAATTTGAAAAGAGCAAAGGGTGGAAGAACAATATTGAAGAAGGAAAGGGTACTTCTAATGTGGTTGTTAGCAAAGATGTTCCTATTGCTCCTGGTAACTGAATTAGTTGTGTCTAAATGATAGCACAATGTTACGTTCCTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571705" ref_strand="+" ref_description="SGN-E571705 [30745]">
      <seq>tgcttatgttggttttgatgctgtgtcgactatggctgaggaaactaaggatccggctcgagatatccccattggcctagttggatctatggtgatcaccactactgtgtactgtttattggctataacactgtgtcttatgcagccttataagagcattgatcctaatgctccgttttctgtggcgttcaaagctgttggatggagttgggcgcaatatattgtggctgcaggtgcgttgaaaggaatgacctcagtgttgcttgtaggcgcggttggtcaggctcgttatctcactcacattgcgcggactcacatgatgcctccgtggttttcctatgttgatgaaaaaacagggacgcccgtcaatgccacggcggtcatgatgtctgctactgcaatcattgccttcttcacgaagctcgaaattctctccaatctcttgtcaatctccacccttttcatcttcatgctcgtggccctcgctctcctcgttcgtcgttactatgtgagtggtgtgaccacaaacgcaaaccgcaacaagctaattatatgcctattactcatcctcgggtcctcaatcgccacagctgcttactggggacttagcgagaaaggatggattgcatactgctttactctgcctatttggttttcagcaactgcaggaatttgtattttcattcctcaggctcgtaatccaaagctttggggtgtgcctcttgtaccttgggttgccatcattatcaatagctatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="73098" stop="71664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72798" g_stop="72566" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72565" i_stop="72491" i_length="75">
            <donor d_prob="0.506" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72490" g_stop="71964" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="761" r_length="528" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E571705" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72798" e_stop="72566"/>
          <exon e_start="72490" e_stop="71964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTATGTTGGTTTTGATGCTGTTTCGACTATGGCTGAGGAAACTAAGGATCCAGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGTTTATTGGCTATAACACTCTGTCTTATGCAGCCTTATCAGAGCATTGATCCTAATGCTCCGTTTTCTGTGGCGTTCAAAGCAGTTGGATGGAGTTGGGCGCAATATATTGTAGCTGCAGGTAGGGGCGGAGCTACATACTTGTGAAAATTTTGAACACATTTAGCGAAATTTCTAACTTTGTCACTAATTCCAGGTGCGTTGAAAGGAATGACCTCAGTGTTGCTTGTAGGCGCGGTTGGTCAGGCTCGTTATCTCACACACATTGCGCGGACTCACATGATGCCTCCGTGGTTTTCCTATGTTGATGAAAAAACAGGGACGCCCGTCAATGCCACAGCGGTCATGATGTCTGCTACTGCAATCATCGCCTTCTTCACAAAGCTCGAAATTCTCTCCAATCTCTTGTCGATCTCCACCCTTTTCATCTTCATGCTCGTGGCCCTCGCTCTCCTCGTTCGCCGTTACTATGTGAGTGGTGTGACCACAAACGCAAACCGCAACAAGCTAATTATATGCATATTGCTCATCCTCGGGTCCTCAATCGCCACAGCTGCTTACTGGGGACTTAGTGAGAAAGGATGGATTGGATACTGCTTCACTGTGCCTATTTGGGTTTCAGCAACTGCAGGGATTTGTATTTTCATTCCTCAGGCTCGTAATCCTAAGCTTTGGGGTGTGCCTCTTGTGCCTT-GGTTGCCATCATTATCGATAGCTATCAAC</genome_strand>
        <mrna_strand>TGCTTATGTTGGTTTTGATGCTGTGTCGACTATGGCTGAGGAAACTAAGGATCCGGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGTTTATTGGCTATAACACTGTGTCTTATGCAGCCTTATAAGAGCATTGATCCTAATGCTCCGTTTTCTGTGGCGTTCAAAGCTGTTGGATGGAGTTGGGCGCAATATATTGTGGCTGCAG...........................................................................GTGCGTTGAAAGGAATGACCTCAGTGTTGCTTGTAGGCGCGGTTGGTCAGGCTCGTTATCTCACTCACATTGCGCGGACTCACATGATGCCTCCGTGGTTTTCCTATGTTGATGAAAAAACAGGGACGCCCGTCAATGCCACGGCGGTCATGATGTCTGCTACTGCAATCATTGCCTTCTTCACGAAGCTCGAAATTCTCTCCAATCTCTTGTCAATCTCCACCCTTTTCATCTTCATGCTCGTGGCCCTCGCTCTCCTCGTTCGTCGTTACTATGTGAGTGGTGTGACCACAAACGCAAACCGCAACAAGCTAATTATATGCCTATTACTCATCCTCGGGTCCTCAATCGCCACAGCTGCTTACTGGGGACTTAGCGAGAAAGGATGGATTGCATACTGCTTTACTCTGCCTATTTGGTTTTCAGCAACTGCAGGAATTTGTATTTTCATTCCTCAGGCTCGTAATCCAAAGCTTTGGGGTGTGCCTCTTGTACCTTGGGTTGCCATCATTATCAATAGCTATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356090" ref_strand="+" ref_description="SGN-E356090 [cLHT-7-C21]">
      <seq>ttcatcatctgcatcattgccattcgtagtacgaaaggctcttctcgtctcaactatgttgcctcgatcattcacattgtggtgattgttttcatcatcatctgtggtctaatcaaggcagataccaagaactacaccccctttacgccatttggagttcgtggcattttcaaagcttctgcggtgttattctttgcttatgttggctttgatgctgtttcgactatggctgaggaaactaaggatccagctcgagatatccccattggcctagttggatctatggtgatcaccactactgtgtactgcttattggctataacactgtgtcttatgcagccttatcagagcattgatcctaatgctccgttttctgtggcgttcaaagctgatggatggagttgggcgcaatatattgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="73292" stop="72273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72992" g_stop="72573" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E356090" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72992" e_stop="72573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCATCTGCATCATTGCCATTCGTAGTACGAAAGGCTCTTCTCGTCTCAACTATGTTGCCTCGATCATTCACATTGTGGTGATTGTTTTCATCATCATCTGTGGCCTAATCAAGGCAGATACCAAGAACTACACCCCCTTTACGCCATTTGGAGTTCGTGGCATTTTCAAAGCTTCTGCGGTGTTGTTCTTTGCTTATGTTGGTTTTGATGCTGTTTCGACTATGGCTGAGGAAACTAAGGATCCAGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGTTTATTGGCTATAACACTCTGTCTTATGCAGCCTTATCAGAGCATTGATCCTAATGCTCCGTTTTCTGTGGCGTTCAAAGCAGTTGGATGGAGTTGGGCGCAATATATTGTA</genome_strand>
        <mrna_strand>TTCATCATCTGCATCATTGCCATTCGTAGTACGAAAGGCTCTTCTCGTCTCAACTATGTTGCCTCGATCATTCACATTGTGGTGATTGTTTTCATCATCATCTGTGGTCTAATCAAGGCAGATACCAAGAACTACACCCCCTTTACGCCATTTGGAGTTCGTGGCATTTTCAAAGCTTCTGCGGTGTTATTCTTTGCTTATGTTGGCTTTGATGCTGTTTCGACTATGGCTGAGGAAACTAAGGATCCAGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGCTTATTGGCTATAACACTGTGTCTTATGCAGCCTTATCAGAGCATTGATCCTAATGCTCCGTTTTCTGTGGCGTTCAAAGCTGATGGATGGAGTTGGGCGCAATATATTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356061" ref_strand="+" ref_description="SGN-E356061 [cLHT-7-C19]">
      <seq>tctgcttcatcatctgcatcattgccattcgtagtacgaaaggctcttctcgtctcaactatgttgcctcgatcattcacattgtggtgattgttttcatcatcatctgtggtctaatcaaggcagataccaagaactacaccccctttacgccatttggagttcgtggcattttcaaagcttctgcggtgttattctttgcttatgttggttttgatgctgtttcgactatggctgaggaaactaaggatccagctcgagatatccccattggcctagttggatctatggtgatcaccactactgtgtactgtttattggctataacactgtgtcttatgcagccttatcagagcattgatcctaatgctccgttttctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="73297" stop="72316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72997" g_stop="72616" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E356061" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72997" e_stop="72616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTTCATCATCTGCATCATTGCCATTCGTAGTACGAAAGGCTCTTCTCGTCTCAACTATGTTGCCTCGATCATTCACATTGTGGTGATTGTTTTCATCATCATCTGTGGCCTAATCAAGGCAGATACCAAGAACTACACCCCCTTTACGCCATTTGGAGTTCGTGGCATTTTCAAAGCTTCTGCGGTGTTGTTCTTTGCTTATGTTGGTTTTGATGCTGTTTCGACTATGGCTGAGGAAACTAAGGATCCAGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGTTTATTGGCTATAACACTCTGTCTTATGCAGCCTTATCAGAGCATTGATCCTAATGCTCCGTTTTCTGT</genome_strand>
        <mrna_strand>TCTGCTTCATCATCTGCATCATTGCCATTCGTAGTACGAAAGGCTCTTCTCGTCTCAACTATGTTGCCTCGATCATTCACATTGTGGTGATTGTTTTCATCATCATCTGTGGTCTAATCAAGGCAGATACCAAGAACTACACCCCCTTTACGCCATTTGGAGTTCGTGGCATTTTCAAAGCTTCTGCGGTGTTATTCTTTGCTTATGTTGGTTTTGATGCTGTTTCGACTATGGCTGAGGAAACTAAGGATCCAGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGTTTATTGGCTATAACACTGTGTCTTATGCAGCCTTATCAGAGCATTGATCCTAATGCTCCGTTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482858" ref_strand="+" ref_description="SGN-E482858 [cSTE-5-H12]">
      <seq>caagctttcaactaaatccctggctaatcaccagaaagtgaacaaacatggggatagaaagtgaagtaccggaatcaggaggaggaatccggcgaagaaattgtgtgtgcacaaaagacgattttctgccggaggaatcgttcaagagctggggcaattacgtgaatgcgctgaggcaaactccgacgaggttaatcgaacgggcgttgacgcgatcgaatgatgaagcagagctggaggcgaagtcacagagtcaccatgaaatgaagaagacattgacatggtgggacctaatatggttcgggatgggagcggtgattggagcaggaatcttcgtactgacggggcttgaagcgagccaggatgcaggccctgctgttgtactgtcgtatgcagtttccggcgtctccgccttgctctctgtcttctgctacactgagtttgccgttgagatccctgttgcaggtggttcatttgcctacttgagggtggagcttggtgactttgtggcctttattgctgctggaaacatccttcttgaatatgtgattggtggtgctgcagtggctcgttcatggacctcatactttgcaactctattgaacttcgagtctgacaaattcctcatcacggctcatggtttagccaaggactacaaccaactcgacccaatcgctggtgcggtctgcttcatcatctgcatcattgccattcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="76581" stop="72666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76278" g_stop="75848" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="465" r_length="431" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75847" i_stop="73217" i_length="2631">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73216" g_stop="72966" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="716" r_length="251" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E482858" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76278" e_stop="75848"/>
          <exon e_start="73216" e_stop="72966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAAAGAACATGGGGATAGAAGGTGAAGTACCGGAATCAGGAGGAGGAATCAGGCGAAGAAATTGTGTGTGCACAAAAGACGATTTTCTGCCGGAGGAATCGTTCAAGAGCTGGGGAAATTACACGAATGCGCTGAGGCAAACTCCGACGAGGTTAATCGAACGGGCGTTGACGCGATCGAATGATGAAGCAGAGCTGGAGGCGAAGTCACGGAGTCACCATGAAATGAAGAAGACATTGACATGGTGGGACCTAATATGGTTTGGGATGGGAGCGGTGATTGGAGCAGGAATCTTCGTACTGACGGGGCTTGAAGCGAGCCAGGACGCTGGCCCTGCTGTTGTACTGTCATATGCAGTTTCCGGCGTCTCCGCCTTGCTCTCTGTCTTCTGTTACACTGAGTTTGCCGTTGAGATCCCTGTTGCAGGTATGTTTTGAAATCTCGATTAATTTGACTTTGTCTAAACCCTTTTCTTTCAAATTCAGTTGCTTTGAACCTTTGATTAATTTAAATTCATGTCATGTAAGATTAAAAAATATTTTCTCGCTTTATCCTCAAAACATGAAACTTCGAGAAAGTTGATTTCGTGATCAAATTACCTTCGGATAAGAATTTTCCACTTATGGGATAGTAACTTAGAGAATAAGGCACGATTATGTAATAAATTTTACACATATTATTTTCTTAAAATCACTTTTCATAAGCAGGTAAATTGTTATCAAGATAAAAGTTAATTTTTCTATAAGAAACTGTACAAGGAGTTTTGATTTTAAGTTGATATTTATTACGACGAAAAGTTATTATTATGACGAAAAGTTAAATTTTGTGAATATTATGCAAAGTTCTCCGTTGGACTTACGGGACTTGAAAGATAGTGACAACTGTTTGATTAATAAGGGCATTATACGTTTATAACATAATTTTTTATTATTATTTTTGCCTGTATTTGTGTGTTTCTTCTTCTACTTAGCCAGGATGGTATTAATATAAAAGAAAGTTTGGATTAAGAGTGATTCGTCGTTGTATAAATGAAAATAATACTGTAGTAAATTAACAGCTAGGTAGTGTACACATGCATTTGTCAATAATTTGCCTTTCATATTTAAAAATGTTTGAAGTTTATTATTTAGTTGACGGAGTTGAAACAGTGGATCCTAATAAGTAGGAGTAAATAATTAATAAAATGTCTACATCTCTTAATTAAATTATCCCACGCCCAGTCGCTCTCTGCAGGCCACCATGTTGCTGATACTTAGGGATCGGTTGGATTGGTTTGAGGGATAAGAGTATATAGTTATGGAATTTTTTTTTATCTAGGATAAAATTATAGTGTCTTGTTTGATTATTATATTGGGATAACGTATTCCATCATTTATATTATTGGAGTGTGATAAACTATTTAATACACATGATAGATAAATTATCCCAAAGTAGCTAATTTTAAATTAATTAATCTAAAAATAATTAATTTCCAACCAAACAATTAGTGAATTGTAGCTAAGGCATTAACTTAATAGGGGTATGTTGTTACGAAGCTATTAAGTTTGGATATTTCTTCCTTTTCCAAATGAAGTGGACACATTTGGTGTAATGGGTTAAAGGAGATAATCCTAAGATAAAATTTTAGTACCCAAAAATCATAATATGTTCTTTTTTTTATAACATTTGAAATATTGATGCTGATATTTAATACCCTATTATAACTTATGTTCAAATCAATCACTATAGCGGTGTGAGTTGTGTACAGCCCAATATGAAAATGTAATGAACCAAAAGTTGTGGGATTGTCGTGAAATTGTGATTTTCCTTTTCTAAAGTCAGCGCCAGCAAAATAGAAATTTGAGTCACTCTGCAGTCCCCACTAAGCAGTTATGGCAGTGGGTACTGGGGCCAGGGTTGAAGATTCAACGTTCCAGGTTGGAAAAACAAGGCTAACGTAATATTTTCGGCTGCATTTTTGGACTTTTAGGATCTCTAGTTACATTTTAGAATTGTTCTTTAGAATTAAATTAGTTTGATATTTTCAAATTTAAAATCTAAATATCCATAAAGTTATAATTATTCTCATATATTAATTCAGGAAAAAGATACATTTTTGCAATGCAATAACGTCATTTTACAATTAGGTCAGAGTTCATATAGATTTTCGTTAATTTTTCTCCTTTTTGTGGGACGACCATAGGATAAAACTGTGGAATATTGTTTACTTTGGTAAGCATGAGATTGAAATTTTGAAGCATTTGCTTTATTGGTAAAAACACATCATGTAATTTGCTTTAGTGGTAAAACACATCATGTTGAGTAAATTAGGTGCATGTCACAAATTAAAACGTATACGAAAACTTCATATTTAAGTAGAAAAAGATAGAGATGTGGATCAGTTATTATCTTCTAATTTAAGTAGTAAAAGATAGAGATTTGGATCAGTTATTATCTTTCTAATTTAAGTAGAAAAGATAGAAATGTGAATCAGTTAATATCTTCTAGTATAAAATCCTATACTGTTAGACCGCTTGAATTTTTTTACCCTTTTGGCACATTTATATTCCCAGTGCACACGCCCATTCAATATCAATTTTGTTTTTTTGGTATAATTTAATCTGTAATTTGTAAATTTACTATTGTCTGAATTATTTCGAACTAATTGTAAAATGTAGATACTACATTATGATCGACAAAATAAATCATTTTGTACTATATTTCATTGTTTTATCACTGGCAATCATTCAATACGTCTTATTAATATTGTATAATCTCATCTACTCTGTTCATTAAAACATTGGCTAACATGCATGCTTATTATAACTACATGAACAGTTAGGGTTTTAAAATGAAGCATTGATCAGATCAACTCGTTGAATATGCTCGATAAGTTGAAATTATAATCAGCAACTGCAAATTAATGTTTGTTTAAGTGTATGTGTCTATGTATTTGGAAAAGCTTAAACTTTTAAAATACGTATACATCACACTTTTATTTACTTAATTATAATTTCATCAATGTTGATGTAGTTTTTATTAAGGAGTATGTACTAAGTTTTAAAATGATTATTTTAGGTGGTTCATTTGCCTACTTGAGGGTGGAGCTTGGTGACTTTGTGGCCTTCATTGCTGCTGGAAACATCCTTCTTGAATATGTGATTGGTGGTGCTGCAGTGGCTCGTTCATGGACCTCATACTTTGCAACTTTGTTGAACTTCAAGCCTGAAAAATTCCTCATCACGGCTCATGGTTTAGCTAAGGGCTACAACCAACTTGACCCAATCGCTGTTGCGGTCTGCTTCATCATCTGCATCATTGCCATTCGT</genome_strand>
        <mrna_strand>AAAGTGAACAAACATGGGGATAGAAAGTGAAGTACCGGAATCAGGAGGAGGAATCCGGCGAAGAAATTGTGTGTGCACAAAAGACGATTTTCTGCCGGAGGAATCGTTCAAGAGCTGGGGCAATTACGTGAATGCGCTGAGGCAAACTCCGACGAGGTTAATCGAACGGGCGTTGACGCGATCGAATGATGAAGCAGAGCTGGAGGCGAAGTCACAGAGTCACCATGAAATGAAGAAGACATTGACATGGTGGGACCTAATATGGTTCGGGATGGGAGCGGTGATTGGAGCAGGAATCTTCGTACTGACGGGGCTTGAAGCGAGCCAGGATGCAGGCCCTGCTGTTGTACTGTCGTATGCAGTTTCCGGCGTCTCCGCCTTGCTCTCTGTCTTCTGCTACACTGAGTTTGCCGTTGAGATCCCTGTTGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCATTTGCCTACTTGAGGGTGGAGCTTGGTGACTTTGTGGCCTTTATTGCTGCTGGAAACATCCTTCTTGAATATGTGATTGGTGGTGCTGCAGTGGCTCGTTCATGGACCTCATACTTTGCAACTCTATTGAACTTCGAGTCTGACAAATTCCTCATCACGGCTCATGGTTTAGCCAAGGACTACAACCAACTCGACCCAATCGCTGGTGCGGTCTGCTTCATCATCTGCATCATTGCCATTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484981" ref_strand="+" ref_description="SGN-E484981 [cSTE-16-G17]">
      <seq>catggtgtgaactgaatcccttgctaatcaccagagagtgaaaaaacatggggatagaaagtgaagtaccggaatcaggaggaggaatcaggcgaagaaattgtgtgtgcacaaaagacgattttctgccggaggaatcgttcaagagctggggaaattttgcgggtgcgctgaggcaaactccgacgaggttaatcgaacgggcgttgacgcgatcgagtgacgaagcatagctggaggcgaagtcacggagtcaccatgaaatgaagaagacattgacatggtgggacctaatatggttcgggatgggagcggtgattggagcaggaatcttcgtactgacggggcttgaagcgagccaagatgcaggccctgctgttgtactgtcgtatgcatgttccggcgtatccgccttgctctctgtcttctgctacactgagtttgccgttgagatccctgatgtaggtggttcatttgcctacttgagggtggagcttggtgactttgtggcctttattggtgctggaaatatccttcttgaatatgtgattggtggtgctgcagtggctcgttcatggacctaatactttgcaactatattgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="76581" stop="72776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76278" g_stop="75848" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="465" r_length="431" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75847" i_stop="73217" i_length="2631">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73216" g_stop="73076" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="606" r_length="141" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E484981" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76278" e_stop="75848"/>
          <exon e_start="73216" e_stop="73076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAAAGAACATGGGGATAGAAGGTGAAGTACCGGAATCAGGAGGAGGAATCAGGCGAAGAAATTGTGTGTGCACAAAAGACGATTTTCTGCCGGAGGAATCGTTCAAGAGCTGGGGAAATTACACGAATGCGCTGAGGCAAACTCCGACGAGGTTAATCGAACGGGCGTTGACGCGATCGAATGATGAAGCAGAGCTGGAGGCGAAGTCACGGAGTCACCATGAAATGAAGAAGACATTGACATGGTGGGACCTAATATGGTTTGGGATGGGAGCGGTGATTGGAGCAGGAATCTTCGTACTGACGGGGCTTGAAGCGAGCCAGGACGCTGGCCCTGCTGTTGTACTGTCATATGCAGTTTCCGGCGTCTCCGCCTTGCTCTCTGTCTTCTGTTACACTGAGTTTGCCGTTGAGATCCCTGTTGCAGGTATGTTTTGAAATCTCGATTAATTTGACTTTGTCTAAACCCTTTTCTTTCAAATTCAGTTGCTTTGAACCTTTGATTAATTTAAATTCATGTCATGTAAGATTAAAAAATATTTTCTCGCTTTATCCTCAAAACATGAAACTTCGAGAAAGTTGATTTCGTGATCAAATTACCTTCGGATAAGAATTTTCCACTTATGGGATAGTAACTTAGAGAATAAGGCACGATTATGTAATAAATTTTACACATATTATTTTCTTAAAATCACTTTTCATAAGCAGGTAAATTGTTATCAAGATAAAAGTTAATTTTTCTATAAGAAACTGTACAAGGAGTTTTGATTTTAAGTTGATATTTATTACGACGAAAAGTTATTATTATGACGAAAAGTTAAATTTTGTGAATATTATGCAAAGTTCTCCGTTGGACTTACGGGACTTGAAAGATAGTGACAACTGTTTGATTAATAAGGGCATTATACGTTTATAACATAATTTTTTATTATTATTTTTGCCTGTATTTGTGTGTTTCTTCTTCTACTTAGCCAGGATGGTATTAATATAAAAGAAAGTTTGGATTAAGAGTGATTCGTCGTTGTATAAATGAAAATAATACTGTAGTAAATTAACAGCTAGGTAGTGTACACATGCATTTGTCAATAATTTGCCTTTCATATTTAAAAATGTTTGAAGTTTATTATTTAGTTGACGGAGTTGAAACAGTGGATCCTAATAAGTAGGAGTAAATAATTAATAAAATGTCTACATCTCTTAATTAAATTATCCCACGCCCAGTCGCTCTCTGCAGGCCACCATGTTGCTGATACTTAGGGATCGGTTGGATTGGTTTGAGGGATAAGAGTATATAGTTATGGAATTTTTTTTTATCTAGGATAAAATTATAGTGTCTTGTTTGATTATTATATTGGGATAACGTATTCCATCATTTATATTATTGGAGTGTGATAAACTATTTAATACACATGATAGATAAATTATCCCAAAGTAGCTAATTTTAAATTAATTAATCTAAAAATAATTAATTTCCAACCAAACAATTAGTGAATTGTAGCTAAGGCATTAACTTAATAGGGGTATGTTGTTACGAAGCTATTAAGTTTGGATATTTCTTCCTTTTCCAAATGAAGTGGACACATTTGGTGTAATGGGTTAAAGGAGATAATCCTAAGATAAAATTTTAGTACCCAAAAATCATAATATGTTCTTTTTTTTATAACATTTGAAATATTGATGCTGATATTTAATACCCTATTATAACTTATGTTCAAATCAATCACTATAGCGGTGTGAGTTGTGTACAGCCCAATATGAAAATGTAATGAACCAAAAGTTGTGGGATTGTCGTGAAATTGTGATTTTCCTTTTCTAAAGTCAGCGCCAGCAAAATAGAAATTTGAGTCACTCTGCAGTCCCCACTAAGCAGTTATGGCAGTGGGTACTGGGGCCAGGGTTGAAGATTCAACGTTCCAGGTTGGAAAAACAAGGCTAACGTAATATTTTCGGCTGCATTTTTGGACTTTTAGGATCTCTAGTTACATTTTAGAATTGTTCTTTAGAATTAAATTAGTTTGATATTTTCAAATTTAAAATCTAAATATCCATAAAGTTATAATTATTCTCATATATTAATTCAGGAAAAAGATACATTTTTGCAATGCAATAACGTCATTTTACAATTAGGTCAGAGTTCATATAGATTTTCGTTAATTTTTCTCCTTTTTGTGGGACGACCATAGGATAAAACTGTGGAATATTGTTTACTTTGGTAAGCATGAGATTGAAATTTTGAAGCATTTGCTTTATTGGTAAAAACACATCATGTAATTTGCTTTAGTGGTAAAACACATCATGTTGAGTAAATTAGGTGCATGTCACAAATTAAAACGTATACGAAAACTTCATATTTAAGTAGAAAAAGATAGAGATGTGGATCAGTTATTATCTTCTAATTTAAGTAGTAAAAGATAGAGATTTGGATCAGTTATTATCTTTCTAATTTAAGTAGAAAAGATAGAAATGTGAATCAGTTAATATCTTCTAGTATAAAATCCTATACTGTTAGACCGCTTGAATTTTTTTACCCTTTTGGCACATTTATATTCCCAGTGCACACGCCCATTCAATATCAATTTTGTTTTTTTGGTATAATTTAATCTGTAATTTGTAAATTTACTATTGTCTGAATTATTTCGAACTAATTGTAAAATGTAGATACTACATTATGATCGACAAAATAAATCATTTTGTACTATATTTCATTGTTTTATCACTGGCAATCATTCAATACGTCTTATTAATATTGTATAATCTCATCTACTCTGTTCATTAAAACATTGGCTAACATGCATGCTTATTATAACTACATGAACAGTTAGGGTTTTAAAATGAAGCATTGATCAGATCAACTCGTTGAATATGCTCGATAAGTTGAAATTATAATCAGCAACTGCAAATTAATGTTTGTTTAAGTGTATGTGTCTATGTATTTGGAAAAGCTTAAACTTTTAAAATACGTATACATCACACTTTTATTTACTTAATTATAATTTCATCAATGTTGATGTAGTTTTTATTAAGGAGTATGTACTAAGTTTTAAAATGATTATTTTAGGTGGTTCATTTGCCTACTTGAGGGTGGAGCTTGGTGACTTTGTGGCCTTCATTGCTGCTGGAAACATCCTTCTTGAATATGTGATTGGTGGTGCTGCAGTGGCTCGTTCATGGACCTCATACTTTGCAACTTTGTTGAACT</genome_strand>
        <mrna_strand>AGAGTGAAAAAACATGGGGATAGAAAGTGAAGTACCGGAATCAGGAGGAGGAATCAGGCGAAGAAATTGTGTGTGCACAAAAGACGATTTTCTGCCGGAGGAATCGTTCAAGAGCTGGGGAAATTTTGCGGGTGCGCTGAGGCAAACTCCGACGAGGTTAATCGAACGGGCGTTGACGCGATCGAGTGACGAAGCATAGCTGGAGGCGAAGTCACGGAGTCACCATGAAATGAAGAAGACATTGACATGGTGGGACCTAATATGGTTCGGGATGGGAGCGGTGATTGGAGCAGGAATCTTCGTACTGACGGGGCTTGAAGCGAGCCAAGATGCAGGCCCTGCTGTTGTACTGTCGTATGCATGTTCCGGCGTATCCGCCTTGCTCTCTGTCTTCTGCTACACTGAGTTTGCCGTTGAGATCCCTGATGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCATTTGCCTACTTGAGGGTGGAGCTTGGTGACTTTGTGGCCTTTATTGGTGCTGGAAATATCCTTCTTGAATATGTGATTGGTGGTGCTGCAGTGGCTCGTTCATGGACCTAATACTTTGCAACTATATTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426540" ref_strand="+" ref_description="SGN-E426540 [STM-46-B16]">
      <seq>caagctttcaactaaatccctggctaatcaccagaaagtgaacaaacatggggatagaaagtgaagtaccggaatcaggaggaggaatccggcgaagaaattgtgtgtgcacaaaagacgattttctgccggaggaatcgttcaagagctggggcaattacgtgaatgcgctgaggcaaactccgacgaggttaatcgaacgggcgttgacgcgatcgaatgatgaagcagagctggaggcgaagtcacagagtcaccatgaaatgaagaagacattgacatggtgggacctaatatggttcgggatgggagcggtgattggagcaggaatcttcgtactgacggggcttgaagcgagccaggatgcaggccctgctgttgtactgtcgtatgcagtttccggcgtctccgccttgctctctgtcttctgctacactgagtttgccgttgagatccctgttgcaagtggttcatttgcctacttgaaggtggagcttggtgactttgtggcctttattgctgctggaaacatccttcttgaatatgtgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="76581" stop="72830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76278" g_stop="75848" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="465" r_length="431" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75847" i_stop="73217" i_length="2631">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73216" g_stop="73130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="552" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E426540" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76278" e_stop="75848"/>
          <exon e_start="73216" e_stop="73130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAAAGAACATGGGGATAGAAGGTGAAGTACCGGAATCAGGAGGAGGAATCAGGCGAAGAAATTGTGTGTGCACAAAAGACGATTTTCTGCCGGAGGAATCGTTCAAGAGCTGGGGAAATTACACGAATGCGCTGAGGCAAACTCCGACGAGGTTAATCGAACGGGCGTTGACGCGATCGAATGATGAAGCAGAGCTGGAGGCGAAGTCACGGAGTCACCATGAAATGAAGAAGACATTGACATGGTGGGACCTAATATGGTTTGGGATGGGAGCGGTGATTGGAGCAGGAATCTTCGTACTGACGGGGCTTGAAGCGAGCCAGGACGCTGGCCCTGCTGTTGTACTGTCATATGCAGTTTCCGGCGTCTCCGCCTTGCTCTCTGTCTTCTGTTACACTGAGTTTGCCGTTGAGATCCCTGTTGCAGGTATGTTTTGAAATCTCGATTAATTTGACTTTGTCTAAACCCTTTTCTTTCAAATTCAGTTGCTTTGAACCTTTGATTAATTTAAATTCATGTCATGTAAGATTAAAAAATATTTTCTCGCTTTATCCTCAAAACATGAAACTTCGAGAAAGTTGATTTCGTGATCAAATTACCTTCGGATAAGAATTTTCCACTTATGGGATAGTAACTTAGAGAATAAGGCACGATTATGTAATAAATTTTACACATATTATTTTCTTAAAATCACTTTTCATAAGCAGGTAAATTGTTATCAAGATAAAAGTTAATTTTTCTATAAGAAACTGTACAAGGAGTTTTGATTTTAAGTTGATATTTATTACGACGAAAAGTTATTATTATGACGAAAAGTTAAATTTTGTGAATATTATGCAAAGTTCTCCGTTGGACTTACGGGACTTGAAAGATAGTGACAACTGTTTGATTAATAAGGGCATTATACGTTTATAACATAATTTTTTATTATTATTTTTGCCTGTATTTGTGTGTTTCTTCTTCTACTTAGCCAGGATGGTATTAATATAAAAGAAAGTTTGGATTAAGAGTGATTCGTCGTTGTATAAATGAAAATAATACTGTAGTAAATTAACAGCTAGGTAGTGTACACATGCATTTGTCAATAATTTGCCTTTCATATTTAAAAATGTTTGAAGTTTATTATTTAGTTGACGGAGTTGAAACAGTGGATCCTAATAAGTAGGAGTAAATAATTAATAAAATGTCTACATCTCTTAATTAAATTATCCCACGCCCAGTCGCTCTCTGCAGGCCACCATGTTGCTGATACTTAGGGATCGGTTGGATTGGTTTGAGGGATAAGAGTATATAGTTATGGAATTTTTTTTTATCTAGGATAAAATTATAGTGTCTTGTTTGATTATTATATTGGGATAACGTATTCCATCATTTATATTATTGGAGTGTGATAAACTATTTAATACACATGATAGATAAATTATCCCAAAGTAGCTAATTTTAAATTAATTAATCTAAAAATAATTAATTTCCAACCAAACAATTAGTGAATTGTAGCTAAGGCATTAACTTAATAGGGGTATGTTGTTACGAAGCTATTAAGTTTGGATATTTCTTCCTTTTCCAAATGAAGTGGACACATTTGGTGTAATGGGTTAAAGGAGATAATCCTAAGATAAAATTTTAGTACCCAAAAATCATAATATGTTCTTTTTTTTATAACATTTGAAATATTGATGCTGATATTTAATACCCTATTATAACTTATGTTCAAATCAATCACTATAGCGGTGTGAGTTGTGTACAGCCCAATATGAAAATGTAATGAACCAAAAGTTGTGGGATTGTCGTGAAATTGTGATTTTCCTTTTCTAAAGTCAGCGCCAGCAAAATAGAAATTTGAGTCACTCTGCAGTCCCCACTAAGCAGTTATGGCAGTGGGTACTGGGGCCAGGGTTGAAGATTCAACGTTCCAGGTTGGAAAAACAAGGCTAACGTAATATTTTCGGCTGCATTTTTGGACTTTTAGGATCTCTAGTTACATTTTAGAATTGTTCTTTAGAATTAAATTAGTTTGATATTTTCAAATTTAAAATCTAAATATCCATAAAGTTATAATTATTCTCATATATTAATTCAGGAAAAAGATACATTTTTGCAATGCAATAACGTCATTTTACAATTAGGTCAGAGTTCATATAGATTTTCGTTAATTTTTCTCCTTTTTGTGGGACGACCATAGGATAAAACTGTGGAATATTGTTTACTTTGGTAAGCATGAGATTGAAATTTTGAAGCATTTGCTTTATTGGTAAAAACACATCATGTAATTTGCTTTAGTGGTAAAACACATCATGTTGAGTAAATTAGGTGCATGTCACAAATTAAAACGTATACGAAAACTTCATATTTAAGTAGAAAAAGATAGAGATGTGGATCAGTTATTATCTTCTAATTTAAGTAGTAAAAGATAGAGATTTGGATCAGTTATTATCTTTCTAATTTAAGTAGAAAAGATAGAAATGTGAATCAGTTAATATCTTCTAGTATAAAATCCTATACTGTTAGACCGCTTGAATTTTTTTACCCTTTTGGCACATTTATATTCCCAGTGCACACGCCCATTCAATATCAATTTTGTTTTTTTGGTATAATTTAATCTGTAATTTGTAAATTTACTATTGTCTGAATTATTTCGAACTAATTGTAAAATGTAGATACTACATTATGATCGACAAAATAAATCATTTTGTACTATATTTCATTGTTTTATCACTGGCAATCATTCAATACGTCTTATTAATATTGTATAATCTCATCTACTCTGTTCATTAAAACATTGGCTAACATGCATGCTTATTATAACTACATGAACAGTTAGGGTTTTAAAATGAAGCATTGATCAGATCAACTCGTTGAATATGCTCGATAAGTTGAAATTATAATCAGCAACTGCAAATTAATGTTTGTTTAAGTGTATGTGTCTATGTATTTGGAAAAGCTTAAACTTTTAAAATACGTATACATCACACTTTTATTTACTTAATTATAATTTCATCAATGTTGATGTAGTTTTTATTAAGGAGTATGTACTAAGTTTTAAAATGATTATTTTAGGTGGTTCATTTGCCTACTTGAGGGTGGAGCTTGGTGACTTTGTGGCCTTCATTGCTGCTGGAAACATCCTTCTTGAATATGTGATTG</genome_strand>
        <mrna_strand>AAAGTGAACAAACATGGGGATAGAAAGTGAAGTACCGGAATCAGGAGGAGGAATCCGGCGAAGAAATTGTGTGTGCACAAAAGACGATTTTCTGCCGGAGGAATCGTTCAAGAGCTGGGGCAATTACGTGAATGCGCTGAGGCAAACTCCGACGAGGTTAATCGAACGGGCGTTGACGCGATCGAATGATGAAGCAGAGCTGGAGGCGAAGTCACAGAGTCACCATGAAATGAAGAAGACATTGACATGGTGGGACCTAATATGGTTCGGGATGGGAGCGGTGATTGGAGCAGGAATCTTCGTACTGACGGGGCTTGAAGCGAGCCAGGATGCAGGCCCTGCTGTTGTACTGTCGTATGCAGTTTCCGGCGTCTCCGCCTTGCTCTCTGTCTTCTGCTACACTGAGTTTGCCGTTGAGATCCCTGTTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCATTTGCCTACTTGAAGGTGGAGCTTGGTGACTTTGTGGCCTTTATTGCTGCTGGAAACATCCTTCTTGAATATGTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447815" ref_strand="+" ref_description="SGN-E447815 [cSTS-3-C7]">
      <seq>gtgtgtgcacaaaagacgcttttctgccggaggaatcgttcaagagctggggcaattaccgtgaatgcgctgaggcaaacctccgacgaggttaatcgaacgggcgttgacgccgatcgaatgatgaagcagagctggaggcgaagtcaccagagtcaccatgaaatgaagaagacattgaccatggtgggacctaatatggttcgggatgggagcggtgattggagcaggaatcttcgtacctgacggggcttgaagcgagccaggatgcaggccctgctgttgtactgtcgtatgcagtttccggcgtctccgccttgctctctgtcttctgctacactgagtttgccgttgagatccctgttngcaggtggttcatttgcctacttgagggtggagccttggtgacttttgtggcctttattgctgctggaaacatccttcttgaatatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="76510" stop="72834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76210" g_stop="75848" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75847" i_stop="73217" i_length="2631">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73216" g_stop="73134" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="455" r_length="85" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E447815" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76210" e_stop="75848"/>
          <exon e_start="73216" e_stop="73134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTGCACAAAAGACGATTTTCTGCCGGAGGAATCGTTCAAGAGCTGGGGAAATTA-CACGAATGCGCTGAGGCAAA-CTCCGACGAGGTTAATCGAACGGGCGTTGACG-CGATCGAATGATGAAGCAGAGCTGGAGGCGAAGTCA-CGGAGTCACCATGAAATGAAGAAGACATTGA-CATGGTGGGACCTAATATGGTTTGGGATGGGAGCGGTGATTGGAGCAGGAATCTTCGTA-CTGACGGGGCTTGAAGCGAGCCAGGACGCTGGCCCTGCTGTTGTACTGTCATATGCAGTTTCCGGCGTCTCCGCCTTGCTCTCTGTCTTCTGTTACACTGAGTTTGCCGTTGAGATCCCTGTT-GCAGGTATGTTTTGAAATCTCGATTAATTTGACTTTGTCTAAACCCTTTTCTTTCAAATTCAGTTGCTTTGAACCTTTGATTAATTTAAATTCATGTCATGTAAGATTAAAAAATATTTTCTCGCTTTATCCTCAAAACATGAAACTTCGAGAAAGTTGATTTCGTGATCAAATTACCTTCGGATAAGAATTTTCCACTTATGGGATAGTAACTTAGAGAATAAGGCACGATTATGTAATAAATTTTACACATATTATTTTCTTAAAATCACTTTTCATAAGCAGGTAAATTGTTATCAAGATAAAAGTTAATTTTTCTATAAGAAACTGTACAAGGAGTTTTGATTTTAAGTTGATATTTATTACGACGAAAAGTTATTATTATGACGAAAAGTTAAATTTTGTGAATATTATGCAAAGTTCTCCGTTGGACTTACGGGACTTGAAAGATAGTGACAACTGTTTGATTAATAAGGGCATTATACGTTTATAACATAATTTTTTATTATTATTTTTGCCTGTATTTGTGTGTTTCTTCTTCTACTTAGCCAGGATGGTATTAATATAAAAGAAAGTTTGGATTAAGAGTGATTCGTCGTTGTATAAATGAAAATAATACTGTAGTAAATTAACAGCTAGGTAGTGTACACATGCATTTGTCAATAATTTGCCTTTCATATTTAAAAATGTTTGAAGTTTATTATTTAGTTGACGGAGTTGAAACAGTGGATCCTAATAAGTAGGAGTAAATAATTAATAAAATGTCTACATCTCTTAATTAAATTATCCCACGCCCAGTCGCTCTCTGCAGGCCACCATGTTGCTGATACTTAGGGATCGGTTGGATTGGTTTGAGGGATAAGAGTATATAGTTATGGAATTTTTTTTTATCTAGGATAAAATTATAGTGTCTTGTTTGATTATTATATTGGGATAACGTATTCCATCATTTATATTATTGGAGTGTGATAAACTATTTAATACACATGATAGATAAATTATCCCAAAGTAGCTAATTTTAAATTAATTAATCTAAAAATAATTAATTTCCAACCAAACAATTAGTGAATTGTAGCTAAGGCATTAACTTAATAGGGGTATGTTGTTACGAAGCTATTAAGTTTGGATATTTCTTCCTTTTCCAAATGAAGTGGACACATTTGGTGTAATGGGTTAAAGGAGATAATCCTAAGATAAAATTTTAGTACCCAAAAATCATAATATGTTCTTTTTTTTATAACATTTGAAATATTGATGCTGATATTTAATACCCTATTATAACTTATGTTCAAATCAATCACTATAGCGGTGTGAGTTGTGTACAGCCCAATATGAAAATGTAATGAACCAAAAGTTGTGGGATTGTCGTGAAATTGTGATTTTCCTTTTCTAAAGTCAGCGCCAGCAAAATAGAAATTTGAGTCACTCTGCAGTCCCCACTAAGCAGTTATGGCAGTGGGTACTGGGGCCAGGGTTGAAGATTCAACGTTCCAGGTTGGAAAAACAAGGCTAACGTAATATTTTCGGCTGCATTTTTGGACTTTTAGGATCTCTAGTTACATTTTAGAATTGTTCTTTAGAATTAAATTAGTTTGATATTTTCAAATTTAAAATCTAAATATCCATAAAGTTATAATTATTCTCATATATTAATTCAGGAAAAAGATACATTTTTGCAATGCAATAACGTCATTTTACAATTAGGTCAGAGTTCATATAGATTTTCGTTAATTTTTCTCCTTTTTGTGGGACGACCATAGGATAAAACTGTGGAATATTGTTTACTTTGGTAAGCATGAGATTGAAATTTTGAAGCATTTGCTTTATTGGTAAAAACACATCATGTAATTTGCTTTAGTGGTAAAACACATCATGTTGAGTAAATTAGGTGCATGTCACAAATTAAAACGTATACGAAAACTTCATATTTAAGTAGAAAAAGATAGAGATGTGGATCAGTTATTATCTTCTAATTTAAGTAGTAAAAGATAGAGATTTGGATCAGTTATTATCTTTCTAATTTAAGTAGAAAAGATAGAAATGTGAATCAGTTAATATCTTCTAGTATAAAATCCTATACTGTTAGACCGCTTGAATTTTTTTACCCTTTTGGCACATTTATATTCCCAGTGCACACGCCCATTCAATATCAATTTTGTTTTTTTGGTATAATTTAATCTGTAATTTGTAAATTTACTATTGTCTGAATTATTTCGAACTAATTGTAAAATGTAGATACTACATTATGATCGACAAAATAAATCATTTTGTACTATATTTCATTGTTTTATCACTGGCAATCATTCAATACGTCTTATTAATATTGTATAATCTCATCTACTCTGTTCATTAAAACATTGGCTAACATGCATGCTTATTATAACTACATGAACAGTTAGGGTTTTAAAATGAAGCATTGATCAGATCAACTCGTTGAATATGCTCGATAAGTTGAAATTATAATCAGCAACTGCAAATTAATGTTTGTTTAAGTGTATGTGTCTATGTATTTGGAAAAGCTTAAACTTTTAAAATACGTATACATCACACTTTTATTTACTTAATTATAATTTCATCAATGTTGATGTAGTTTTTATTAAGGAGTATGTACTAAGTTTTAAAATGATTATTTTAGGTGGTTCATTTGCCTACTTGAGGGTGGAG-CTTGGTGAC-TTTGTGGCCTTCATTGCTGCTGGAAACATCCTTCTTGAATATGTG</genome_strand>
        <mrna_strand>GTGTGTGCACAAAAGACGCTTTTCTGCCGGAGGAATCGTTCAAGAGCTGGGGCAATTACCGTGAATGCGCTGAGGCAAACCTCCGACGAGGTTAATCGAACGGGCGTTGACGCCGATCGAATGATGAAGCAGAGCTGGAGGCGAAGTCACCAGAGTCACCATGAAATGAAGAAGACATTGACCATGGTGGGACCTAATATGGTTCGGGATGGGAGCGGTGATTGGAGCAGGAATCTTCGTACCTGACGGGGCTTGAAGCGAGCCAGGATGCAGGCCCTGCTGTTGTACTGTCGTATGCAGTTTCCGGCGTCTCCGCCTTGCTCTCTGTCTTCTGCTACACTGAGTTTGCCGTTGAGATCCCTGTTNGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCATTTGCCTACTTGAGGGTGGAGCCTTGGTGACTTTTGTGGCCTTTATTGCTGCTGGAAACATCCTTCTTGAATATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374886" ref_strand="+" ref_description="SGN-E374886 [TUS-15-O5](-)">
      <seq>agaaaatgacaaagcaagcacaaaaagaccggactccgttgatggctgatgaaaagcctgtgtttgtttaagagcaactagtaaagaaattcctgtacaccactttaaaattgaacttaatggtacagaaatactcgagaatggcttccgtcgtactcgtaagcttacctcctccacctttcaatcatcctgcaaccttttacatggaatacatggatttgctggttgaaaatataccaagacttttgattgttcgtggatatcataaaaatgttgtcactttattcacgtagttcttgttcatgtatttgtataattttttgttgctttagctaagaactcccaatttatttgccttttaacattttccttttttcttttactgcccttcacaaccaagaggggtttacaattgtataattctttatattaaggggcacactggaccaaaattttgctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="80181" stop="79123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79882" g_stop="79423" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="481"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E374886" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79882" e_stop="79423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</genome_strand>
        <mrna_strand>AGAAAATGACAAAGCAAGCACAAAAAGACCGGACTCCGTTGATGGCTGATGAAAAGCCTGTGTTTGTTTAAGAGCAACTAGTAAAGAAATTCCTGTACACCACTTTAAAATTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTACTCGTAAGCTTACCTCCTCCACCTTTCAATCATCCTGCAACCTTTTACATGGAATACATGGATTTGCTGGTTGAAAATATACCAAGACTTTTGATTGTTCGTGGATATCATAAAAATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTATTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351129" ref_strand="+" ref_description="SGN-E351129 [cTOS-6-J22]">
      <seq>agagaccggactccgttgatggctgatggaaagcctgtgtttgttgaagagcaacaagtagagaaattcctgtacaccactctaaagctgaacttaatggtacagaaatactcgagaatggcttccgtcgtactcgtaagcttacctcctccacctctcaatcatcctgcaaccttctacatggaatacatggatctgctggttgaaaatataccaagactcttgattgttcgtggatatcataaagatgttgtcactttattcacgtagttcttgttcatgtatttgtataattttttgttgctttagctaagaactcccaatttatttgccttttaacattttccttttttcttttactgcccttcacaaccaagaggggtttacaattgtataattctttatattaaggggcacactggaccaaaattttgctagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="80159" stop="79114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79859" g_stop="79423" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="449"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E351129" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79859" e_stop="79423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</genome_strand>
        <mrna_strand>AGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAGCAACAAGTAGAGAAATTCCTGTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTACTCGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTATTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357069" ref_strand="+" ref_description="SGN-E357069 [cTOS-22-B7]">
      <seq>agaccggactccgttgatggctgatggaaagcctgtgtttgttgaagagcaacaagtagagaaattcctgtacaccactctaaagctgaacttaatggtacagaaatactcgagaatggcttccgtcgtactcgtaagcttacctcctccacctctcaatcatcctgcaaccttctacatggaatacatggatctgctggttgaaaatataccaagactcttgattgttcgtggatatcataaagatgttgtcactttattcacgtagttcttgttcatgtatttgtataattttttgttgctttagctaagaactcccaatttatttgccttttaacattttccttttttcttttactgcccttcacaaccaagaggggtttacaattgtataattctttatattaaggggcacactggaccaaaattttgctagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="80157" stop="79114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79857" g_stop="79423" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="437" polyA_stop="447"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E357069" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79857" e_stop="79423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</genome_strand>
        <mrna_strand>AGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAGCAACAAGTAGAGAAATTCCTGTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTACTCGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTATTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343800" ref_strand="+" ref_description="SGN-E343800 [cTOF-12-K7]">
      <seq>tgaatcgcagcttaaaaaccccttttctcgcggttaacactttccggtttgggtagttcagacttgactgctttgaattcgggaggcaatggaaggtggagaagagattgagattgcggaggaaaatgagttcccttcagttattggacgaaaatacagtccagtggtggcgcatgacaatgatagtgcagttattgagatgtcttctgttcgtcccggatcttcctcttctctccccaaccacgatctcaagaacgtcaaagtaggtgtccatccaaatatggcatctgaagaaagagacgagtcattatccaatcatagtagcaatggtcctcaaagagaatccaaactggaattatttggctttgattctctagtaaatattctaggtctcaagagtatgacaggggatcaaattcccgcaccgtctagtccaagagatggtgaggatataactctcacgcttgagcaacctaagctgaacttaatggtacagaaatactcgagaatggcttccgtcgtactcgtaagcttacctcctccacctctcaatcatcctgcaaccttctacatggaatacatggatcntgctggttgaaaatataccaagactcttgattgttcgtggatatcataaagatgttgtcactntattcacgtagttcttgttcatgtatttgtataattntttgttgctttagctaagaactcccaatttatttgccttttaacattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="95896" stop="79214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95596" g_stop="95345" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95344" i_stop="93389" i_length="1956">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93388" g_stop="93242" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="399" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93241" i_stop="91207" i_length="2035">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91206" g_stop="91128" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="478" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91127" i_stop="79773" i_length="11355">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79772" g_stop="79514" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="738" r_length="260" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E343800" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95596" e_stop="95345"/>
          <exon e_start="93388" e_stop="93242"/>
          <exon e_start="91206" e_stop="91128"/>
          <exon e_start="79772" e_stop="79514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAAGTATTTTCTCTTTCTCTATGTTTTCTCGTTTTGACTAGTATTGACTAGTAGTGTACTAATAGCTCTGGGATTTGATGGCACTGAATTATGAAATTTTTTACTTTGTTTTTTTTAAGCATTTAAGAATTTGAGAACAATTAATAGAGACCGTAAGTATTGATGTTAAATTTATGTCTGAGCTTACTTCTAAGTGTGGATTTGGGTCAACATTTCTTCCATTTATCATGTCTATTGTTTTCCACTTTGGTTGTTAGTTAGGTATGAAAGAAATTGTTTTTCATGAAAATATTTTCTAAGAAAATGAGTTTTTTTTTTTGGTATTATATACAGCAAAAAGTATTATCTTGAAAGTGTTTTAATCTAGACAAATACTATATGGAGTTGGGGGTGGAGAGTGATGGATGGGGATGGGAGCTATGGGGAAGGGGTGAAGATGAGGTGAGTTGGAAGCTGAGAAGGAAACAATCTTGTGAAACTTGTTTTTCCTACTTTTATTGGGGAAGTCATTTTCCTTCTTTGTTTTTTCTTTTATAAAGAAAATGTTTTCAAAAATACTAACGAACCAAACATAGGAAAATTGGAAAATATTTTCGTCTGTACCGAGCACATCCTCAATGTACATAGTTTGTCTTTGCCATGGTTTGGACATTGTTTTGTAGGTAAATGGGTCAGTGGAAATACTACTGAAATCTATGGTTAGGCTTTCATATTAGTATAATTACTTGAATGTTGTGGAACTATTTTCTCATCCATCCTCTCACTTATGTTTTGAAACTTCAAGGGCATAAAAGATTAACAATTTGACTCAAAGTCAATTCTCCTAATAAACTTTGATGAATTTGAAATATTAAGTATCTCTATTTAAATGTTGAGTATGTTAAATATTTCATTAGTATTACTTATAAAAAAGTTGCATTAATATGTACAAAGATTTTTTTTATTTTGAAATTGGCAACATGTTATATTCATCAACACCCCAAAAGGCCTGGTATATCATATCTACAAATACAGGCCTGGACAAAAACAAATATTTCATTAGTATTACTTATAAAAAAGTTGCATTAATATGTACAAAATATTCATCAACATCCCAAAAGGCCTGGTATATCATATCTACAAATACAGGCCTGGACAAAAACATACAAAGAGGCCAAGAAGTCTAGTAATGATTCTGCATCATCTACTAGCTGTTCTTAACACCAAAAATAAAAAAGAGAAATGCAGGAACTCCTGGTCTTCTGTATTGAACTGCTCTTGCTCTCGAAACATTTTGCATTCCTTTATTTCCAAATTGTACACCATATGCAAAGAGTATTGGCTCAATTGGAAATAGTGACATTCATCTATCAGTTATTTATCAACTAAATATACTAGTTCGGATTTGCTTCATTTGTGCGTTGTGAAGTAGATGCTGGTTCTCTCTGGGAATGCGAAACAAAAAAGCTTCATGATAAACTAGACCCAGTAGCTTCCATTTGATAACTCACATTTTAACTCTTTGATACTCTCTTAATGGAAGTGCTTACTTTCTTCGATCGCTCGAACATTATCACTTAGGGTTAAGAATATCTCAAAGCTTGCCTATGGATATACTTTTGGATGTTTGATAGCTTTCTCTACAAGTTTACAAGTTTAATGTTTTAGATATTCTCTGCTCCTTGACCCCCCCCGACTATGTTTAAAAATTTAATATTTGTACACATTTAGTGAATTCTTTATTCATGCATGGTTTGAGCCAATACTACTGGTTCGGCTGTACCACTAGCTATTACTATAGATCCGTCCATGGTGCTCAACTGCTTACTCACATGCTCCAATACATTGGCTACATCCGCATGCCCACCATATTTTTTAATATTAAAGGGTTTGCAGATATCTAGACAAGAATTTTGTTTTGTCCCTTTCTTTTCTCTGGGAAATCATTTCAACCTTTATTCTGATTACACCATTTTTCAGGAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAGGTAAGAGGTACAAATTCTATGTCTCTTTTGTTTTATTTTCCACAAACTTCTATTCGCTGGTATGATATATTTCAGGAAACTCGTTTTTGCTCTCGTCATTTTTTACTTAATAACTTTCTTGAGATAGTTGCATTTTGACATCATTGGAGTAAATTTTAAGTTTTCTGGTGGGCAATGCAAATCAAAGTCAAGACACCAAAGCTCTTCCGTCTATCTAGAACGTACTTATAGTGCTTCCGGCTACCATCTCTGTTAGTCCAGCATGCTTTCCTCTCAGCAACGTTTCCTCCAAATTTCGTATATCTTTTACTTTCTTAGTCATATTGGGCTCTCAAAACTTTATCTGCGGATTTTCTTTAAGTGATTATTTGAGTTTCCTCATTTGAAGGTTAAATTTTTGATATACAAAGTATTCTTTCTAGCTAGAAAGCAACTAAAAATGTACATCAATAGTTTTTGATCACATTCTTGTACATATTTTGGTAGGGTAAATTTTTGTGTTTTTACTCATATTTCCTGTTATTCATTTTTATTGTCAAGACTCAAAATGGAGAGGAGAATGTTCTTTTCCTAGTTGAAATCGTGCGAGATTTTAGAAGGCAATGCATGTAGATTCAATTGGTCTGAAAGAAGAATAAATTTTGTTAATAAAATAAATTTAGGATGCAGAAATTTGTTGGGTTTCTGAACGCACTGAGATCAGTCAACATCTAATTCCATTCAAAAAATAAATGGAAATGCATTGTATCTCTATTTTTTTTGGTGCAAAGAGCAGTGTATAGAGGACATAGACCAACTTGTTGATTTGTTAGGAACTTTGTTACTTTTTTTAGTACCCTTAATGCTAGGGATACAATTTACCAGTTTCACAAAACAAAACAAAATATGAATACAACAATTTATCAAAGCATATGCAGTGTATAACTAACTCGGAGCTCAACAGGTTTTAAACTGTACTTGCGAATGAGGTTTATGCTCAACAAGTGTCAAAACTCAGCCAATGCATGCTAATCTATTCAAATAATAGTTCATGGTGTCAAATACACCCAAACAACTTACTACTGAACTTGGCTGGTTTGCTTTATGTGGCTGGTTACAAACAGTTCATGCGTCACTCAACACAACTTTTCGGAAAGAGGGTTATTTATATGCAGTAGGTGTTTCTCTACCTTCACAAGGTAGGGAAAAGGCTGCGTACACATGACCATCCTCAGAGCCCACTTGTGGGATTACACTAGGTATTATGTTGTTGTTATAGTAGGTATCTCCCGTGCAGCAGTGAGGAAGCAAACTGTGACCCCCCTCTTCTTCAATGCCTAGTGGCAGATGAAATACCATCACTATATCGTAATATATTCAGGATACCTTTTGTTATGGCATGCACAGTAAGGGAGCTATTTACCAGCTGGGTTTTGGGGGAATTAGAATATCATCTAGGAAGGTTTGGAACACAGTGCATGCTTGTGTTTGTTGGGTATTGTGGAAGGGAATGAATACCAGATGTTTCAAAGGGAAACGAGGGTGGTTTCAAGACCTAGCAGGCTCTTATTTCTGTTGATTAAGATGATGAGATCAAATATAATAGATAGTTATCCTGGCCAAGAATGTGTCTGATCGCACCCTAGTTAAGAAAAAGCCATGGAGTCTACTGTAAGGAAAATGAACTAAAAAGAAAGTAGATTATGGTTTACTATCCAAGCTTGCTTGCTTTAGGTAATTTGGACAGACAGGAGTCAATCCTAATGGAAAAGCAGAGTCATCTGGTAGATTTTGATACAAATGTTCTTTTTATGGTCGTTTTGGTTTAACATTCTGGATGTATATGGTTTAGAGTTTTATTTTGGTTGCAAAGCTCCGCTTTTGTTTTGTGGGAGACTGGATTTTGTACTGCAGTGTTCTTCCACCTCTTGTTTGCTTTTTGTATAAAATAAATTGTTTACTTGTCCAAAAAAATGTCCTTAACAACTACTTTCTAACTTCAGTTTTCTCTCAATTTTGTGGTTTTATAATGTTCTTATCAATCTTGTTGTTCCAGTATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAGGTACTTGAACTAATTTGTTGAGCATCGTTTTATTTCCCTGAAGCTTTCCGTGCCATGCACAATTAAGACTGTATCATGTTCATAGAAGTCCTGAAGTAGAATTCACTTTCTTGATTCCCGTGGATTCATTTTCATCTCCTATGCCTATACCTAGTGGGAAAAATTGGGGACTTCCCTTTTCTGAATAAATAGTAAAGGACAGTAGGCTATATAGGGCTGTAAAATGGAGGTTATAAGAAGACAACAGTATGTAATACTTAAGGTTTTCGACTTAGAGTGTCACTATATAATTGTCAACTTTTAATCACACCATTCCAAATTCATTCTTTTATAAAAGTGTTAACATGCAATTACTCCCATTTTCTTGTGAGAGAATTTCCTTCTTATTGATTTATGAACATATTCGAGGTGATTTAAACTTCCTTTTCAAAAAAAAGGAAGAAAACGTTGGAGGTAATTTAGATGTCCTTATATAAGAAAAAAACATATTGGAGGTAATTTAAACTTTAAAAGCTGGTTCTTTTGATCCCTGATATAATACAAAGTTACCATTTTTTTTTAAAGAAGAAGCTGTTTCGTTATGATAGCTAGGATCTTTTCCAGTAATGTGGGAAACAAGTGGAGAAAAGAAACAGGATATCTTTAGTTTAGCTGTTCCTAGGTTTAGATTAATGTTTAAGTTGTTTAGCTGAGCAGTAGTTTGCTAGTTTTTTCATTTTTTCTACAATTCTGTGGAGAATTTATCTTAGGTTTAGATTAATGTTTAAGTTGTTTAGGAGCAGTAGTTTGCTAGTTTTTTCATTTTTTCTACAATTCTGTGGAGAATTTATCTTAGGTAAGTTATCTTTTGTTTCCCTGGATATCTGTAATCCTATTTGTCTTAGGAGTTCAGTTATAATTCAAACAATTAGTTTTATCCTTATTAGAAAAGGATTTTAGTCAGCTCATGAAAAAATATTCATATGGTGTTTAATTCTGTATGGGGAATTTTATTTTGATCTCCCAATGGTTTTCGCAGAACCTTTTATTGCTTATTTGGTGCTTTATGCAACCTTAACTGAGGAGGTTATTCCTAGGTAATTCTAGCTTCTTTGGTTTACTGCTTTATTTCATAGGTGCTTGAATGCTAATGGTTGGTGAATCCCCTCTATCCTCCACCAGCTATTGTTGGCTCACACTGAACTTCCTTAAAACCATTCTAGATTTAAATACATAGCTACTGCTTAGTTCTTTTTTGTCATCCCTCTATCAATCAGCCATTTGTCTCACACTGACTTCCTAAAGATTATTCCAGCTTTAGATATGTTGATAACTATGTTGTTGCATTATTCTTTATCTTGTAAAGAAGAAAGTGTGACTCACATGTTTGTTTCCAATAAGAGAGGATAGATGTGGAACTTGTTGATGAGCTTTAGATATGCAGCTAATTGCTTAGTTGCACTGTTCATTCTCTTGCAAAGAAAATGAGAGTGACTGTCAGATGTTTGTTTCCACAGAGAAAACATAGCTGTGAATTTTGTTGATGTATTCATGGTTTCATTGATGCTTGATCATTGTGGTTGGCATGCTTCCTCTGCGGACACCATTTTTCCTAAATAAACAAGCTGAGCTTTTAGATTTTATTGCAAAGAGGAAGATGTTGTAATCAAAAGAGAATAATAGAACACGCATAAATGAGTAACGATATGAGTGTTATCATACATCACTTTAATGACAACAAGGCCCCTAAAGGCATCTTTGATTTAGCTAACCATCTCTTATCATCACTCAGATTTGTTTCTAAAAGTAATTTTAATATTGTTTCTAAAATTCTAAGTGATCGAAACATCATAGGTTTCTTGTCCTAAAAAATAAAAAAACTGATTGGGGAGGGTCGCAAGCCTCTTAATCACACTATCAAGAAATAGAAAAAATAGCTTGAACTAAGAAACTCACGGGAAGAGGTATTTACTGATTGGATGACGAGATTCTTCTTATGTTGTGCTCAAACGAGGATTTTTGGCCTTGTGGTATTGGTATATAAACCCTTGCAGAATTCAAGAAAGACTCGAACAGATGTAACGGTCACAACAGGTCCCAATGCTTCTTTCCCCGGACGTTGTTGGTGAATGCACAAGGAGTAGTTTCTTAGAAAGACTTTGATATCATGTGAGGAAGAAGTTCTTTTGCTGCTTTTACTAGCTTGCTTTGATATCAGATGATTTTTTTTTTGTTTCAGAAATGGAAATCTCTGCATCCTACTATAGTGAAACACAAAATTTTGAACATTGTTATAACTTATAGGTTATCTACCCTCTCTCTTGCGTGTTTCCCTCCGATTCTAGCTTCTTTTGCTGATGTTTATTTATGGAGTTACTTTTTCCTGCTAAATACTGAACACAATGCAATATAGAGTTGTATATATCTGCAGTTTCTAGTTCAATCTTCACTTAATTTCAACTTGTTATCTCCTATGCTGTCAATTTGTCTTATAACCTTCACATGTTCTTTTATCTTGTGTGTCAACATTTGAAAATAAGACTTTGACAATGCTTGGACGTACCTGGATAGTTAATTTTTGTATTGATGGGTTGCTTAAAGAAGCTCTTGAGTGCATTTTAATCATCTCTATATGTGAATTTTTTGAAGCCAACTGCTGATAAATCTGGCACGCTGATGGGAGTGTTTATGCCATGCTTGCAAAATATTTTGGGGATCATCTACTACATTAGATTTTCGTGGTAAGTTTGCTTACTATCTAATGTATCATGTGATTTATATCAAACTCTTTTTTGGTTAAAGTTTCATGTCTTAATAAAAGTGGACTGGTTCTGTATTCCTAAACGGGCACCTCAAGGACTATGGTGAACCTGCTTTTCAGTTTCAATACTACACATTTTGCATGTTATACTTGCATCTTGCTGGTTTCTCTTACTATATGGAAGTTTGGTGGGTGATGTTCAAGCAATTTAGTCTACATTACTATAGTACCAATCAGCTCTTCTCGTTACTCCAGAAAGGCGTGGTTATACTGGTATCATGAAATACTCAAACTGATCTGCTCCTGCCCCCACCTTTGACATTTTCTAATATAGAAATTAATTACTGTGAGTAGAGATAGAAGGGGAGAAAAGTTATCTTCAGGTAAGATAAGGAAGTGAAAAGGAACAGGAGAAGGGAACAATGAACAAATGCACCCACTACCTATGATCTACTACTGTTAGTTTGATGATATCCTTTTTCGCTCCAACTCAAATAACCACTCTATTTGTGTTGGTTTGTTTTTGTGTATACTGCAGGATTGTTGGTATGGCAGGCATTGGCGAGTCATTGTTGCTGGTTGTGTTCTGTGGATCATGTACATTCCTGACCACGATATCATTAAGTGCTATTGCAAGCAATGGTGCCATGAAGGTGGGAAAAAAATCATCAGATACAACTTCTGTGCAGATTAAAAGGATAGATTTTTAATTTCGTTTCCAGTATAACAAGCTTGCTTTGATATGTGTATCTCTGTTGCCCAGCATTGGCTAGACAATAATATGGATGAATTCTGTGTCTGTCATTCCACCTTATGTAAAAGCTCAACCCGTTAGAGAGAGCATACTTTTAATTACTTAACTATGTGTTTCAACGATCTCCTTGTAGCTTATTTGTTAAGTGATATCCTAGATTTGTTTTCTCTAATCTAGGGTGGTGGCCCTTACTATCTCATTGGTCGTGCATTGGGTCCAGAAGTTGGTGTCAGCATTGGGCTCTGTTTTTTCCTTGGGAATGCAATTGCTGGTGCAATGTGAGTATACATCTGATGTTATATTTTTGTGTGAAGGAACTACTTACTTAGCTGGGGTGTGGGGGTGTGGGTGGGGGTGGGTGGGTGGGTGTGTATGCCAATGTAGGTTAAGTTGCTTCATTATTTCAAACTATCTACAAAAAGATTTTGTGTTGATGCCTGCTCTTATATGTTCCTGCCGGTTAGGTATGTACTGGGAGCCGTAGAGACTTTTCTAAATGCTGTACCAAGTGCGGGCATCTTTAGAGGTATTCCTTAAATGAGATTGAACTTTTATGATTTAGAAAATGGCTTGGTGTTGTCTGTACTTCTACGGTAAAACCATCTGATATCCTTCTGGCTTTATCATAACATTGATACAAGTAACTTATTGTTGATTTTTGATGGATAGTACTGTATTATTTTCAAATTCATTTGTATATCTGAACTTCATTTGTCATCAATGCAGAAACTATCACACGAGTTAATGGCACAGATATTGCAGAGCCCATTACAAGTCCAAGTTTGCATGACCTGCAAATTTATGGGATTGTTGTATCTATTCTTCTCTGCTTTGTCGTGTTTGGTGGAGTAAAAATGATCAATCGCGTTGCACCTGCATTTCTTGTCCCTGTTTTGTTCTCATTGCTTTGCATATTTGTCGGCATCTTTTCTGCGAGGCATGATCATCCAGCAGGTTTATGTTGTCTATGCCTTATTCTTATTCTTTCCTGTCTTACTTGAGAGTTTTTTTTAAAACTGTGTGTTATTCTTATGTGCTATACACTTCCCTTGCATACTCCCTCTGTTTCATTTTAGGTGACTTACATTTTTTAATTTGTTTCGGAAAGAATAACTACTTTCTTGGTTTGGAAATTCTGTAACTTTAAACTTCCTATTTTACTATTAATTACATTCTCTTATTGTTGAAAATTGTCCTAACATGTTCAAGACCACGAATTCTCAAGTACTTTTGGTATGTGACAAAAGTTTTACTTTCTTTCTTAAATTTCTTGCCTAGTCAAACACTACATTCATCAGCTTTCGCTCTGTTAGTGGAGTCTATAGTGTACTGGTATTATTGAAATGGTTTTTAGTTCTTGATCTTAATTTGGTATCTCAACCTCGTTTATTTTCACTATTTTATGTTGCTTTAGTGATGAGCCTTCAGTAGTTCATACACCAATCTAGTTAATTTTATTAGCTTGAGGTCATCATGGAGTATAGTAAAGTCAAACATTGTTGTTTCTTTCCTTTGAACAAATTGCATCTTTGAAGCCATATATGGAAGTCAAGGGCTACATATTATTGATGATAAGCTGTAGAATACCAATTAATTACTGGTTTTGCTAATAAGAATAATGATTCTGAAGAACTATGAATCCAGGCAAAATATAGCTAACTTGGAAAGGCAATCAAGTAACATCAAAATCGTAAAACCACTACAAAAGAACTAGAGAAAGTTACCCAAAAGTAGTATAAAGTAAAGTAAAGATGGGTTCCTGTGTCATGATATCTCGAGGACTGGTGTAAAGTAAAGATGATTTAATTTTTGTGAATTATCTCTTTATTGATGGATATAGAAGATTCATATGGTCAATCCCAGAGGTATTTGCAAAAGTGTTACGTATGTCTGTTCTCCCTGAAGTTTTAATACTCATGGTTGTCATTTCTCATGTGACACCACCTTTTTACTCTGTTGCTATGCATGGTACAGTGGGGATCACAGGGTTGAGTTTGGAATCTTTCAAAAACAACTGGGGGTCTGCTTATCAGATGACTAATAATGCTGGAATTCCAGATCCCAATGGCGACATATACTGGAATTTTAAGTAAGTCATACAATTATTTTTGTTGGTTCCTTTATTTTGCACCATCTTTTTGCTAGGATTAGTTATTTGTTCTTCTTTCTGCCGTTTACTTCAATGTGCATACTGAAAGCATTTAGAACCAAGTCTTAACATTTATTTCCTTCTCCATGTTAGTGCATTGGTAGGTCTCTTCTTCCCTGCTGTAACTGGGATCATGGCAGGTTCGAACCGTTCGGCATCTCTAAAGGACACTCAACGTGCAATTCCTGTTGGGACCTTAGCTGCAACTTTGACTACCACCAGTTTATATCTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAGGTAATATGAACTTATGAAGTACTTTATGATACATTATCATACTTCTGGTACTGTCCTTGTTCCTATCTACACATTGCAGTTTTGAGTGATGAGGTTATTTAAATTGAGTGTTGGGTATAATTGGTCGAGAAAGATATAGTAACAACAACTCTAAGTCAACTCCAAGCAAGTTGAGATCTCCATATGGATCCTGGGCCCTCTTTAGCCATGTCACTCCATGTAGTGCAATTTTCTAACTTTATTTTAAATTAAGTTGGGCTGGCTGGGTGGGGAGTGGGTTAAAAGTCTTAAGATACCTCTTCTTCTATAGTGGAATCATCAAAATACTAAGATACTTTATTTCTTTTAGAAGTTCTAAAACTCGGTTTAGCGCTTGATGTGAGATACTTTTAAGAGGAACACCTCTCTATAGTCTCTCCATTTTTGGGAAAGGAAAAAGAGGAAGGTATGAGGTGAGGAAGTTAAAAAAAAAAGGAAAGGTAAAGGTTATTTCCCTTTACGCAGCAGTTGCAAATGATGACATTCTACCTGAAACTGCATCTAACTGATTATTTGAGGATGCTTAATGGTATTTAGTTCACTATCAATAAAATTTAAATTGGTATTCACTGCATTACTAAAACTATTTGTGCAGGTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAGGTATGTATGAGTATCTTTTTATAGTTTACACAGCTCACATTCTTTTGTACTGCTCTTTTCTTGTTTTCTCAGAACTCCCTGTTTCCTCCCATGTGTCATCTATATTTGGGCAAGATTGAGTGAGGGAAATACAAAAGCTAAGATTTTCACTGAAGGGGCCATAATGTACTCATTGTGATAGTTTTTTTTCCTATTAGTTTATGAGAAATTTTGTTACGTGTCCAGATCGTTATGTTGCATTTTTGTTCCATTTGATATAAAAATTCAAAATTTTACGAGAGAAATATGAAAGGACATCATTATCAAAATAAGAAATATGAAAGGACATGTGAAACTCTCACCACCTCTCATTTAATTGTTGATAGAGTTAGGGCAATTGTGGTAATTTGCAGTTTTCATATACTCCCTTTGTCCAACAGAAGTTATCCACTATACTATTTTAGGATGTCCAACAATACTTGCCCACTTTATGAAATCAATGGATAATTTTTCACTTACTTCCTGCTTTACCCTTATCACTAATTATAGTCATTTCCCTATTAGATTTTTCAAGACACTGTTTTTATTATATTCAAAGGGTATTATAGTAAAATTACTCTTCTATTAATAGTTTCTTAAGAAGTGTGCAAAGTCAATAGTAAACAAGTATTGTTGGACAGAGGGAGTACGTTGCTTATGAGTTAAAAATCTGAAACTGTGTGACCTTGGGTCACTTACTTTGTAGTGGTTATTCCTCTCTAACAAAAATTCAATTACAGTAAAATCCCATTGCCCTGGTTCATATTATAATTAACTTGTATTACCTACTATATGGAGGTACATATAAGCTTAAAAAAAGAAACAAAAATAAAATATCCCTTTTGTCACCACCGCTAAACCAAAAGAATAGAATTTATTTTGTGGAAATTATATTTTTCAATTAAGTGGAGTCTCCATTTAACATCTCTTTATGTGGTTAATCTTTCACCCAAAAAACATTCTAGGAAAACTGTACTTTCTGATCGAAGAACTTTGAGAGGTTTCAGAAATAATATAGCTCGTAATTTTAACAAGAAAACGAGCAATGCCACAATAACAGGAAAAAAGAAATATTAGTGATTAAACAGGAGCATAGATGTCTTTTTTATGGGTATAGTTTGTGCTGTAAAGTAAGGAAAGGAGCCTTATGTGCGCATATTAGAGCAAGAAGGGGTATTATTGTATGTAATGTTGCTAAAGTAAATAATTAGTACCTGTAGTTTAGCCAACATTATATCCCTCTTTAGCTGAGGTACAAAAGAGTTGGAGGCCTAAATTTGTGAAAAAAATTCTGGCTATGGTGGGACCACTTATACTATAATATACCAATGATATATCTATTTTGGAGATGGTGATCATTTTGTTACTTATCTGTTTGTGCTCTAAAATTCTTGTTCGTTGTGCGATTGTATGAAGTCTAGTTAGCTAATTAGCAGCGTGAAGATTAGATGACTTTTATGTTATATGTACAGGCATGGCTTATTTATTGGTTACTCCCTGTAGAATTCTGAATCATGGATTTTGGCATCATACAATTTCTGTCTATGAAATTAATGAATTAGCACCTTTTAAAAAGATTTAAGTGTCTGTTTGAGTTATTCTTGAGCCATTTCTGTTCTTCACGTAGACACTGCTTGGTCGGTCCTACTGCTATGTAGTGTGCAAATGAACTTCTAAGATTGATTAGCTGAATGTGATATAATATAAGTTTTAGGGTAAGTACATCGTCAATCCCTTGAATCTGCTAATAAATATCATTTAGACACTCGGAACAATGACATGTTCCAATTGAGCACCTAAACACATGGTAAAGTGTTCCTATAAGATATCTCCGGCTCATTTTAAAAAGTTTCTACATGTGTTCACAAACATCCATTATGTAGATAAGTTAATCACATAAAGTGTGCATCCTTTTTTAATTATCCATATCAACATCGATGAGAATTGCATAAGGAATGTGTGAATATATTGGCTATTATTTGATTAAAAATGGAAAATAATGTGTATGAATATATTGGCTATTACTTGATTAAAAAGTAATAATAGGTACAGACTTTAAATGGCAAACCTTCTTTTATTCTTCACTTTTTGTATGGTTATTGGAATAGACTGAATCACTAGAAATTCACATACTTCCCTCGAGTACTTTAATGTATTAAGTTATTAATTGTACAAAACAGAGATTGAAGACTACAACTTTATCATTCAGGAATTTCTTTTCTTGGTTCACTATGTTTAAAAATGTAAGATTTTATATTTGTATGATCCTATTGAAACATTCTATTGCATATGCAGCAAACCAGGTACATCCGAAAAACTGGTATCCTATCCCACTTATATTTTGTCGTCCGTGGGGCAAGCTGCCAGAAAATGTGCCTTGCCATCCAAAGCTTGCCGACTTTGCCAACTGCATGAAGAAAAAAGGCAGGGGAATGTCCATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTCAGTGCTGCACGACGGAGAGTTGCCAGTTACTTGGAAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATC-TGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTC</genome_strand>
        <mrna_strand>TGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTACTCGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCNTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTNTATTCACGTAGTTCTTGTTCATGTATTTGTATAATTNTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467185" ref_strand="+" ref_description="SGN-E467185 [cSTB-42-H3]">
      <seq>ctttgttggaataattaatgactgcattgttgcaaacaaggctgttgtcattgtcaagggtctcgatgaatggccaaatgagtatcaaagacagtatggtaccatcgatttatactggatagtgagagatggtggtcttatgcttctactctctcagctcctccttacaaaagatagctttgagggctgtaagatacaggtgttctgcattgcggaggcagattctgatgcagagggattgaaggctgatgtaaagaaatttctttatgacctccggatgcaagctgaagttattgtcatttcaatgaggtcatgggaagccgaaggggagcagcaagaatctgttgaagcattcagtgctgcacgacagagagttgctagttacttggaagaaatgaaagagcaagcacagagagaccggactccgttgatggctgatggaaagcctgtgtttgttgaagagcaacaagtagagaaattcctttacaccactctaaagctgaacttaatggtacaaaaatactccagaatggctgcagtcgtgctcgtaagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="80571" stop="79416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80271" g_stop="79716" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E467185" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80271" e_stop="79716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTCAGTGCTGCACGACGGAGAGTTGCCAGTTACTTGGAAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTA</genome_strand>
        <mrna_strand>CTTTGTTGGAATAATTAATGACTGCATTGTTGCAAACAAGGCTGTTGTCATTGTCAAGGGTCTCGATGAATGGCCAAATGAGTATCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTTATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAGGGCTGTAAGATACAGGTGTTCTGCATTGCGGAGGCAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAATTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCAATGAGGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTTGAAGCATTCAGTGCTGCACGACAGAGAGTTGCTAGTTACTTGGAAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAGCAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAAAAATACTCCAGAATGGCTGCAGTCGTGCTCGTAAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313459" ref_strand="+" ref_description="SGN-E313459 [cTOA-13-F5]">
      <seq>ttcgaggcattgttcagactatgggtctcggaaatctcaagccaaatataatcgttatgcggtaccctgagatttggcgacgtgaaaatttgactgatattcctgctacctttgttggaataattaatgactgcattgttgcgaacaaggctgttgtcattgtcaagggtctcgacgaatggcctaatgagtaccaaagacagtatggtaccatcgatttatactggatagtgagagatggtggtctcatgcttctactctctcagctcctccttacaaaagatagctttgaaggctgtaagatacaggtgttctgcattgcagaggaagattctgatgcagagggattgaaggctgatgtaaagaagtttctttatgacctccggatgcaagctgaagttattgtcatttccatgaagtcatgggaagccgaaggggagcagcaagaatctgtcgaagcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="80680" stop="79617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80380" g_stop="79917" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E313459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80380" e_stop="79917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTC</genome_strand>
        <mrna_strand>TTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275089" ref_strand="+" ref_description="SGN-E275089 [cLEN-9-M23]">
      <seq>atctttgtctctattatcgatggagactaccatgaacgtgctgaggatgctaaggacgcttgcaaggaactaagtacctatattgactacaagcaatgtgaaggtgtagctgagattgttgttgccccaagcatgtctgaaggctttcgaggcattgttcagactatgggtctcggaaatctcaagccaaatataatcgttatgcggtaccctgagatttggcgacgtgaaaatttgactgatattcctgctacctttgttggaataattaatgactgcattgttgcgaacaaggctgttgtcattgtcaagggtctcgacgaatggcctaatgagtaccaaatacagtatggtaccatcgatttatactggatagtgagagatggtggtctcatgcttctactctctcagctcctccttacaaaagatagctttgaaggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="80825" stop="79783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80525" g_stop="80083" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E275089" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80525" e_stop="80083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTG</genome_strand>
        <mrna_strand>ATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAATACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374887" ref_strand="+" ref_description="SGN-E374887 [TUS-15-O5]">
      <seq>ctggtttctgtgctactattcggagctgttgcaactagagataagcttttgactgataggttattatctgctacagttgcctggccatttccggctattgtttatgttggtataatcctctcaaccttgggggcagcccttcaaagccttactggtgctccacgtctccttgcagcgattgcaaatgatgaaattctacctgttcttaactattttaaagtggcagatggacatgagcctcatgtggctactctcttcactgccatcatctgcattggttgtgttgtaatcgggaatctagatcttgtctcacctactacaacaatgttttacctcgtatgctatgctggcgtgaacttatcctgcttccttctggatctgttagatgctcccagctggcgacctcggtggaaatttcaccactggagcctctctcttgttggagcattactttgtatagtgaccatgtttttgatttcctgggcattcaccattgtatcacttgccctagcaagcctcatatattattacgttagtataaaggggaaagcaggagactggggtgacggttttaagagtgcgtattttcagcttgctcttcgcagtttgcgatctttgggagcaaaccaggtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="85555" stop="82682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85255" g_stop="85197" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85196" i_stop="84563" i_length="634">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84562" g_stop="84162" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="460" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84161" i_stop="83144" i_length="1018">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83143" g_stop="82982" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="622" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E374887" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85255" e_stop="85197"/>
          <exon e_start="84562" e_stop="84162"/>
          <exon e_start="83143" e_stop="82982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAGGTAATATGAACTTATGAAGTACTTTATGATACATTATCATACTTCTGGTACTGTCCTTGTTCCTATCTACACATTGCAGTTTTGAGTGATGAGGTTATTTAAATTGAGTGTTGGGTATAATTGGTCGAGAAAGATATAGTAACAACAACTCTAAGTCAACTCCAAGCAAGTTGAGATCTCCATATGGATCCTGGGCCCTCTTTAGCCATGTCACTCCATGTAGTGCAATTTTCTAACTTTATTTTAAATTAAGTTGGGCTGGCTGGGTGGGGAGTGGGTTAAAAGTCTTAAGATACCTCTTCTTCTATAGTGGAATCATCAAAATACTAAGATACTTTATTTCTTTTAGAAGTTCTAAAACTCGGTTTAGCGCTTGATGTGAGATACTTTTAAGAGGAACACCTCTCTATAGTCTCTCCATTTTTGGGAAAGGAAAAAGAGGAAGGTATGAGGTGAGGAAGTTAAAAAAAAAAGGAAAGGTAAAGGTTATTTCCCTTTACGCAGCAGTTGCAAATGATGACATTCTACCTGAAACTGCATCTAACTGATTATTTGAGGATGCTTAATGGTATTTAGTTCACTATCAATAAAATTTAAATTGGTATTCACTGCATTACTAAAACTATTTGTGCAGGTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAG</genome_strand>
        <mrna_strand>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204796" ref_strand="+" ref_description="SGN-E204796 [cLEC-14-M21]">
      <seq>ctggtttctgtgctactattcggagctgttgcaactagagataagcttttgactgataggttattatctgctacagttgcctggccatttccggctattgtttatgttggtataatcctctcaaccttgggggcagcccttcaaagccttactggtgctccacgtctccttgcagcgattgcaaatgatgaaattctacctgttcttaactattttaaagtggcagatggacatgagcctcatgtggctactctcttcactgccatcatctgcattggttgtgttgtaatcgggaatctagatcttgtctcacctactacaacaatgttttacctcgtatgctatgctggcgtgaacttatcctgcttccttctggatctgttagatgctcccagctggcgacctcggtggaaatttcaccactggagcctctctcttgttggagcattactttgtatagtgaccatgtttttgatttcctgggcattcaccattgtatcacttgccctagcaagcctcatatattattacgttagtataaaggggaaagcaagagactggggtgacggttttaagagtgcgtattttcagcttgctcttcgcagtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="85555" stop="82694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85255" g_stop="85197" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85196" i_stop="84563" i_length="634">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84562" g_stop="84162" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="460" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84161" i_stop="83144" i_length="1018">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83143" g_stop="82994" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="610" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E204796" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85255" e_stop="85197"/>
          <exon e_start="84562" e_stop="84162"/>
          <exon e_start="83143" e_stop="82994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAGGTAATATGAACTTATGAAGTACTTTATGATACATTATCATACTTCTGGTACTGTCCTTGTTCCTATCTACACATTGCAGTTTTGAGTGATGAGGTTATTTAAATTGAGTGTTGGGTATAATTGGTCGAGAAAGATATAGTAACAACAACTCTAAGTCAACTCCAAGCAAGTTGAGATCTCCATATGGATCCTGGGCCCTCTTTAGCCATGTCACTCCATGTAGTGCAATTTTCTAACTTTATTTTAAATTAAGTTGGGCTGGCTGGGTGGGGAGTGGGTTAAAAGTCTTAAGATACCTCTTCTTCTATAGTGGAATCATCAAAATACTAAGATACTTTATTTCTTTTAGAAGTTCTAAAACTCGGTTTAGCGCTTGATGTGAGATACTTTTAAGAGGAACACCTCTCTATAGTCTCTCCATTTTTGGGAAAGGAAAAAGAGGAAGGTATGAGGTGAGGAAGTTAAAAAAAAAAGGAAAGGTAAAGGTTATTTCCCTTTACGCAGCAGTTGCAAATGATGACATTCTACCTGAAACTGCATCTAACTGATTATTTGAGGATGCTTAATGGTATTTAGTTCACTATCAATAAAATTTAAATTGGTATTCACTGCATTACTAAAACTATTTGTGCAGGTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGC</genome_strand>
        <mrna_strand>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAAGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279004" ref_strand="+" ref_description="SGN-E279004 [cLER-2-F24]">
      <seq>gccttactggtgctccacgtctccttgcagcgattgcaaatgatgaaattctacctgttcttaactattttaaagtggcagatggacatgagcctcatgtggctactctcttcactgccatcatctgcattggttgtgttgtaatcgggaatctagatcttgtctcacctactacaacaatgttttacctcgtatgctatgctggcgtgaacttatcctgcttccttctggatctgttagatgctcccagctggcgacctcggtggaaatttcaccactggagcctctctcttgttggagcattactttgtatagtgaccatgtttttgatttcctgggcattcaccattgtatcacttgccctagcaagcctcatatattattacgttagtataaaggggaaagcaggagactggggtgacggttttaagagtgcgtattttcagcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="84776" stop="82708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84476" g_stop="84162" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84161" i_stop="83144" i_length="1018">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83143" g_stop="83008" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="451" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E279004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84476" e_stop="84162"/>
          <exon e_start="83143" e_stop="83008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGC</genome_strand>
        <mrna_strand>GCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480784" ref_strand="+" ref_description="SGN-E480784 [cSTD-15-E8]">
      <seq>atttcgtcggcgagcactctatttctccgacttacctccggtgaccgtgttttcttcagaaaacgaacttaaaggggagaaagtacagaagttcctgcagaaaaatgaatatcagtagtagccgggatgactacaagttccttcaaatagtagatgccagggctgcacttggccagaaagttaatctcatcggcgtcgttatcgaaaccggtcttcccaagcaatccaagggcacggattgcttttgctccattaggatcattgatgagtcctacccaagcccagggattgcagttaatttttttgccgaaactatggataagcttcctgaagtgctgactgttggtgatataattcagatctctcaagttgtgatgaaaactcatggacccgatatttatgctttgttcaacaagaagttctcttcatttgcaatatttgacggaaagaatgattcaaatttcctcccttatcaatgttcttctaagtatcatgctagagagcaagacaagaaatttatactgggtttgatgaagtggttggttgatcacaagattgatacaggtttgactggattacattcgttgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="99164" stop="103986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99464" g_stop="99700" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99701" i_stop="102495" i_length="2795">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102496" g_stop="102632" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="374" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102633" i_stop="103494" i_length="862">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103495" g_stop="103684" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="564" r_length="190" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E480784" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99464" e_stop="99700"/>
          <exon e_start="102496" e_stop="102632"/>
          <exon e_start="103495" e_stop="103684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGTCGTCGAGCACTCTATTCCTCCGACTTAACTCCGGTGACCGTGCTTTTTTCACAAAATCAAACTTAAAGGAGAGAGATTACAGAAATTCTTGCAG-AAAATGAATCTCAATAGTAGCCGGGATGACTACAAGTTCCTTCAAATAGTAGATGCCAGGGCTGCACTTGGCCAGAAAGTTAATCTCATCGGCGTCGTTGTCGAAACCGGTCTTCCCAAGAAATCCAGGGGCACGGGTAATTTCTTCTTCTCAAATACTTTTTTCCTTACATTTTATGCAACTTCTCCCTTATTTCTACCTGTTTTATATAGTTGAATAATCTTCAATATTTGACCATTGAGTATTTAGGAGTGTAATTGTTTACATGCACTTTCTGATTCCACATTTAGTGTAAAAATAAAAATAAATTCAACGACAAATTCGACTTGAAAGTTGAGGCATTTATTAAGTTTCACTAATTTGTATCTAGAAGCTAGTCACTCATTTGACATCAACACTTGTTCAAGGTGCATTGAGCTGTTGAACATAATGTAAAAAGAATCCCCAACTCGGGAACAATGTCAACTTGTTTGGAACCAGAAAAGGCCTTCACAGGAACACATCTGCTAATTGGTCTTTAGTTTGGACAATAGAAAGAGAAATAAGACCATCAAATAACTTTCTCGGGAAAAATGACAATCCAGCTCAATATACTAGTCACATTTGTGAGAGATAGAGTTTTTAGCAACGTGGATACAACTTGATTGTCACAATAGGCAGCAGTCAAAGTAAGAGAGGTAATAGAAAATTCCACAAACAATTGAACAACAAAGAGTCCAAGACAACTCTGCAACTACTTTTGGAAGGATCTGCACTCACTAAGGCTAAGGAGTAGTAGCTTTTTTCCTTGATTTCCATTTTGTCAAGCATTTCAGAACAACCAGTGACATTCTCCTTTGAGTCTGGGTAAGTTTCCCAATCGTCATTACAGAAGGTTTTAAGAGAAAGAGAAAGATCATTTGAAATGAACAAGCCTAGGCAGACAAATGATTTCAGATACCAAAGGGTGGGAAATGCTTCTTTGAAGGTGAGAAAACATGGGAGTGTGCATGAATGACTTAGCAGCTAACCTGCTAAGATAAGTCAGGAAGTTCAGTTTGCCCGGCTAATTTTTTGTTGATTGTAGGATCTGATCTTAAACTTCCATCAGGTGCAGTACACTCAATTGCTGGTCCAAAGGGTATTGGCTGAAGGAAAATCTGAACAATGAAATTTATCCAATATTCCAAGAGTGAATTTTCTATGGCTGATCAGAATACATTAGCCAGTGTCTAAGACTTCCAAATACAGGAAGTAGTCAAAGACCCTTATTCATTGATTTTAAAAGTGGGATCCAGAAAATGCTTCAGCTTAGTGATCCGAAGCATGAGGCCCAGTCACCAGAACAATATCTGCATATAGGCATGAAAATGCAAAGGTCATTATCCTTATTAAAGAATAAAGAATGTTCATCCGAGAGTGCTGAAATCCTCTAGAATGTAAGATTACTCAAAGCTTGGTATACAATTGGTTGAATGCCTATTTTAGACCATTAAGTGATTCCCTCACATGCAGACACTGAGGCTAAGAGAAGACACTATAGACCCTGAGGGACCTTTGTATAGATCTCTCCTTTCAGCATCATAGAGAAAGCGTTGTTCACATCTGGTTGGTATATATTCCACCACTTCTTTGCTGTTATATATAAATCACATAAGGGTTGTTATCTAACTATTGGAGAACAAGTTTTAGTATAGTCTATACCCTCTTCACCAATGTTTTCAAAAAGATCAAATAAATAGACTATACCCTCTTCATAAAAAAAGAAGGAGAAGGTATAGTCTATACCTTCTCTTTGACTATTCCCTATAATCTCCAGCCTCCTTTTATATTATAGACCCGCTTTGAACCAATGTCAAATTCCACTAGGTTCCTAGTATATTGGAGAGGATATAGTCATTATAATTAACTTGTTAGAATGTCCACATTAGTTGAGAAAATGGGTTGTTATCCTACAAGTAAATCAAAGTCTACCCTTTGTAACAATTTAAGTGTTCAGATGAGATGGTTGCACAATACAATAGTACAAATGGGAAAGACTCGGATCGGTCAGATGACTCCAATGCAGACAGCTCTCTCGCAAATCCTAGATCAGGTTGATCAATTGAATGCTTAAGTGAATAAAGACTGAGCAAGAATCAAGGAAATGTAAGGGCTATAGCAGCCAAAAAGAAAGCAATTGTGAAGAGTCCCAAGTAGGAGCTTTAAGGGATGGGTGGTCTCTTTAATATGAACATTCCTCACCTCTTGAGCTAGCTGTTGGAGTTGAGTTAGACCCAAAATCCATTCCTTTACATGGTATCGGGGCAAGACTCATCCCAATTCTTGTTTTCCAGTGTTGTTGCCCTATATTAAATTGCTCACGCTCTAGATATCCAACCATAGGTGTGAGGGGAAGGGTGTGTAAAGAGTCTCACATCGGTGCTTTAAGAGATGAGTGATCTACTTAATATTGTTTGGACATTTCTTACCTCTAAAACTAGCTTTCGAGTTAAGTTAAGCCGAAGATCCATTTTCTTACGAAGATCAACAAAACCAATGTGAGTGGCTAATTGAGCAGGAATGATGACTTCATCAAGGCAAATCATTAGCTACAAATATTTGTTGCTTAACTTTTTATCTATACCACTAGCACTTGTGTTAGTGCATTATAACAACATACCGAGTGTGATCCCACAAGTCGGGTTTGGGGAGGGTAGTGTATATGCAAACCTTACCCCTACCTTGTGTGAGGTAGAGAGGTTCTTTCTTATAGATCATCAGCTCAAGGAAAGTGTTTTAAAAACACGTTTGATAAATACAAGTGCATTGAGTTGTTGAATGCCATATGTTGTACTCATCACATTTTGGGATATGGAGTAGTTAATATCTCAAACCGTTTTTTTCCACCAACATTGTGTGGAATGAACATTTTGGGCCTGATTTTGGCGTCTTTTGTTTTTATTTTTGTAGATGTCTTTTGCTCCATTAGGATCATTGATGAGTCCTACCCAAGCCCAGGGATTGCAGTTAATTTTTTTGCCGAAACTATGGATAAGCTTCCTGAAGTGCTGACTGTTGGTGATATACTTCAGATCTCTCAAGTTGTGGTAACTATTTTTGCTCAAATATTTGCTTGTTGCCTTTTGGGTGTAAAAGATTCTTGAACATTTTTTCATGTGATGGAAATGTTGAAATTATAGATAAGAGTATAACTAAATCCTGAAAATAAATGTTGAAATGGGCTGAATTTTCTTTAGAAAACAATGCACCATATTCAACAAGGTGTAAATATGGAGTTACAATTGGTATTACCTAGAATTCTTGGCTTTTTAAAGGGTGCGCTCCTTTCCCAAAATTTTTTTTTGAAGGACTTCCAATAGCGTGAGTACTTCCAATGGACCAGTTCATGATATTTTTACTAAATAGAAGACTTCATTTCCCCAGCGGTTGATATATTTTAGCATCCTTCACAGTTCAACTATCCTCCTGTAGACAGAAGCAGCTCACCAGAGATTTTGTTGTTTCTTTTAAATGGGATCTGATTTACCAACATTATGATTAGGATGGGCCGCCTTTGCAGTTAATCAGCCACTTGGAAGAGTGTTCTTATCCTCTGTTTTTTGATAAGGGGAAATGTGTTCTTTTCCCTCTTAAGGGGAAAAGTGCTTGTTGCTTCTAAAAAATTATTAGAATAGATTGACTACTTCTTGTTCTGCAGCCGTTCTTCCTCTAGACTCTGTTATATTTGAACCGCTTATGAATCTACTATTATGATCATGGGCAAAGGCCAAGTGGAAACAAATAAAATTCAATTTCTCAAGGAAATAGATAAGCATTAATTGGATTGGCCAACAAACTGAATGCATGATCTTGTCCTGATTGAGTGACCTTTTTTTGTTCTTAAGTATTAATTTCTGGAAGTAAAAAATATTGTGTCAATCCTTACAAGTGGTATTCTTCGGTTTGCAGATGAAAACTCATGGACCCGATATTTATGCTTTGTTCAACAAGAAGTTCTCTTCATTTGCAATATTTGACGGAAAGAATGATTCAAATATCCTCCCTTATCAATGTTCTTCTAAGTACCATGCTAGAGAGCAAGACAAGAAATTTATACTGGGTTTGATGAAGTGGTTGGTTGATCACAAGATCGATACAG</genome_strand>
        <mrna_strand>ATTTCGTCGGCGAGCACTCTATTTCTCCGACTTACCTCCGGTGACCGTGTTTTCTTCAGAAAA-CGAACTTAAAGGGGAGAAAGTACAGAAGTTCCTGCAGAAAAATGAATATCAGTAGTAGCCGGGATGACTACAAGTTCCTTCAAATAGTAGATGCCAGGGCTGCACTTGGCCAGAAAGTTAATCTCATCGGCGTCGTTATCGAAACCGGTCTTCCCAAGCAATCCAAGGGCACGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTTGCTCCATTAGGATCATTGATGAGTCCTACCCAAGCCCAGGGATTGCAGTTAATTTTTTTGCCGAAACTATGGATAAGCTTCCTGAAGTGCTGACTGTTGGTGATATAATTCAGATCTCTCAAGTTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAACTCATGGACCCGATATTTATGCTTTGTTCAACAAGAAGTTCTCTTCATTTGCAATATTTGACGGAAAGAATGATTCAAATTTCCTCCCTTATCAATGTTCTTCTAAGTATCATGCTAGAGAGCAAGACAAGAAATTTATACTGGGTTTGATGAAGTGGTTGGTTGATCACAAGATTGATACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437854" ref_strand="+" ref_description="SGN-E437854 [cSTA-5-C14]">
      <seq>tcggcgagcactctatttctccgacttacctccggtgaccgtgttttcttcagaaaacgaacttaaaggggagaaagtgcagaagttcctgcagaaaaatgaatatcagtagtagccgggatgactacaagttccttcaaatagtagatgccagggctgcacttggccagaaagttaatctcatcggcgtcgttatcgaaaccggtcttcccaagcaatccaagggcacggattgcttttgctccattaggatcattgatgagtcctacccaagcccagggattgcagttaatttttttgccgaaactatggataagcttcctgaagtgctgactgttggtgatataattcagatctctcaagttgtgatgaaaactcatggacccgatatttatgctttgttcaacaagaagttctcttcatttgcaatatttgacggaaagaatgattcaaatttcctcccttatcaatgttcttctaagtatcatgcaagagagcaagacaagaaatttatactgggtttgatgaagtggttggttgatcacaagattgatacaggtttgactgatttacattcgttgaaagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="99170" stop="104612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99470" g_stop="99700" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99701" i_stop="102495" i_length="2795">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102496" g_stop="102632" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="368" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102633" i_stop="103494" i_length="862">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103495" g_stop="103684" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="558" r_length="190" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103685" i_stop="104281" i_length="597">
            <donor d_prob="0.323" d_score="0.98"/>
            <acceptor a_prob="0.840" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104282" g_stop="104312" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="589" r_length="31" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E437854" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99470" e_stop="99700"/>
          <exon e_start="102496" e_stop="102632"/>
          <exon e_start="103495" e_stop="103684"/>
          <exon e_start="104282" e_stop="104312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCGAGCACTCTATTCCTCCGACTTAACTCCGGTGACCGTGCTTTTTTCACAAAATCAAACTTAAAGGAGAGAGATTACAGAAATTCTTGCAGAAA-ATGAATCTCAATAGTAGCCGGGATGACTACAAGTTCCTTCAAATAGTAGATGCCAGGGCTGCACTTGGCCAGAAAGTTAATCTCATCGGCGTCGTTGTCGAAACCGGTCTTCCCAAGAAATCCAGGGGCACGGGTAATTTCTTCTTCTCAAATACTTTTTTCCTTACATTTTATGCAACTTCTCCCTTATTTCTACCTGTTTTATATAGTTGAATAATCTTCAATATTTGACCATTGAGTATTTAGGAGTGTAATTGTTTACATGCACTTTCTGATTCCACATTTAGTGTAAAAATAAAAATAAATTCAACGACAAATTCGACTTGAAAGTTGAGGCATTTATTAAGTTTCACTAATTTGTATCTAGAAGCTAGTCACTCATTTGACATCAACACTTGTTCAAGGTGCATTGAGCTGTTGAACATAATGTAAAAAGAATCCCCAACTCGGGAACAATGTCAACTTGTTTGGAACCAGAAAAGGCCTTCACAGGAACACATCTGCTAATTGGTCTTTAGTTTGGACAATAGAAAGAGAAATAAGACCATCAAATAACTTTCTCGGGAAAAATGACAATCCAGCTCAATATACTAGTCACATTTGTGAGAGATAGAGTTTTTAGCAACGTGGATACAACTTGATTGTCACAATAGGCAGCAGTCAAAGTAAGAGAGGTAATAGAAAATTCCACAAACAATTGAACAACAAAGAGTCCAAGACAACTCTGCAACTACTTTTGGAAGGATCTGCACTCACTAAGGCTAAGGAGTAGTAGCTTTTTTCCTTGATTTCCATTTTGTCAAGCATTTCAGAACAACCAGTGACATTCTCCTTTGAGTCTGGGTAAGTTTCCCAATCGTCATTACAGAAGGTTTTAAGAGAAAGAGAAAGATCATTTGAAATGAACAAGCCTAGGCAGACAAATGATTTCAGATACCAAAGGGTGGGAAATGCTTCTTTGAAGGTGAGAAAACATGGGAGTGTGCATGAATGACTTAGCAGCTAACCTGCTAAGATAAGTCAGGAAGTTCAGTTTGCCCGGCTAATTTTTTGTTGATTGTAGGATCTGATCTTAAACTTCCATCAGGTGCAGTACACTCAATTGCTGGTCCAAAGGGTATTGGCTGAAGGAAAATCTGAACAATGAAATTTATCCAATATTCCAAGAGTGAATTTTCTATGGCTGATCAGAATACATTAGCCAGTGTCTAAGACTTCCAAATACAGGAAGTAGTCAAAGACCCTTATTCATTGATTTTAAAAGTGGGATCCAGAAAATGCTTCAGCTTAGTGATCCGAAGCATGAGGCCCAGTCACCAGAACAATATCTGCATATAGGCATGAAAATGCAAAGGTCATTATCCTTATTAAAGAATAAAGAATGTTCATCCGAGAGTGCTGAAATCCTCTAGAATGTAAGATTACTCAAAGCTTGGTATACAATTGGTTGAATGCCTATTTTAGACCATTAAGTGATTCCCTCACATGCAGACACTGAGGCTAAGAGAAGACACTATAGACCCTGAGGGACCTTTGTATAGATCTCTCCTTTCAGCATCATAGAGAAAGCGTTGTTCACATCTGGTTGGTATATATTCCACCACTTCTTTGCTGTTATATATAAATCACATAAGGGTTGTTATCTAACTATTGGAGAACAAGTTTTAGTATAGTCTATACCCTCTTCACCAATGTTTTCAAAAAGATCAAATAAATAGACTATACCCTCTTCATAAAAAAAGAAGGAGAAGGTATAGTCTATACCTTCTCTTTGACTATTCCCTATAATCTCCAGCCTCCTTTTATATTATAGACCCGCTTTGAACCAATGTCAAATTCCACTAGGTTCCTAGTATATTGGAGAGGATATAGTCATTATAATTAACTTGTTAGAATGTCCACATTAGTTGAGAAAATGGGTTGTTATCCTACAAGTAAATCAAAGTCTACCCTTTGTAACAATTTAAGTGTTCAGATGAGATGGTTGCACAATACAATAGTACAAATGGGAAAGACTCGGATCGGTCAGATGACTCCAATGCAGACAGCTCTCTCGCAAATCCTAGATCAGGTTGATCAATTGAATGCTTAAGTGAATAAAGACTGAGCAAGAATCAAGGAAATGTAAGGGCTATAGCAGCCAAAAAGAAAGCAATTGTGAAGAGTCCCAAGTAGGAGCTTTAAGGGATGGGTGGTCTCTTTAATATGAACATTCCTCACCTCTTGAGCTAGCTGTTGGAGTTGAGTTAGACCCAAAATCCATTCCTTTACATGGTATCGGGGCAAGACTCATCCCAATTCTTGTTTTCCAGTGTTGTTGCCCTATATTAAATTGCTCACGCTCTAGATATCCAACCATAGGTGTGAGGGGAAGGGTGTGTAAAGAGTCTCACATCGGTGCTTTAAGAGATGAGTGATCTACTTAATATTGTTTGGACATTTCTTACCTCTAAAACTAGCTTTCGAGTTAAGTTAAGCCGAAGATCCATTTTCTTACGAAGATCAACAAAACCAATGTGAGTGGCTAATTGAGCAGGAATGATGACTTCATCAAGGCAAATCATTAGCTACAAATATTTGTTGCTTAACTTTTTATCTATACCACTAGCACTTGTGTTAGTGCATTATAACAACATACCGAGTGTGATCCCACAAGTCGGGTTTGGGGAGGGTAGTGTATATGCAAACCTTACCCCTACCTTGTGTGAGGTAGAGAGGTTCTTTCTTATAGATCATCAGCTCAAGGAAAGTGTTTTAAAAACACGTTTGATAAATACAAGTGCATTGAGTTGTTGAATGCCATATGTTGTACTCATCACATTTTGGGATATGGAGTAGTTAATATCTCAAACCGTTTTTTTCCACCAACATTGTGTGGAATGAACATTTTGGGCCTGATTTTGGCGTCTTTTGTTTTTATTTTTGTAGATGTCTTTTGCTCCATTAGGATCATTGATGAGTCCTACCCAAGCCCAGGGATTGCAGTTAATTTTTTTGCCGAAACTATGGATAAGCTTCCTGAAGTGCTGACTGTTGGTGATATACTTCAGATCTCTCAAGTTGTGGTAACTATTTTTGCTCAAATATTTGCTTGTTGCCTTTTGGGTGTAAAAGATTCTTGAACATTTTTTCATGTGATGGAAATGTTGAAATTATAGATAAGAGTATAACTAAATCCTGAAAATAAATGTTGAAATGGGCTGAATTTTCTTTAGAAAACAATGCACCATATTCAACAAGGTGTAAATATGGAGTTACAATTGGTATTACCTAGAATTCTTGGCTTTTTAAAGGGTGCGCTCCTTTCCCAAAATTTTTTTTTGAAGGACTTCCAATAGCGTGAGTACTTCCAATGGACCAGTTCATGATATTTTTACTAAATAGAAGACTTCATTTCCCCAGCGGTTGATATATTTTAGCATCCTTCACAGTTCAACTATCCTCCTGTAGACAGAAGCAGCTCACCAGAGATTTTGTTGTTTCTTTTAAATGGGATCTGATTTACCAACATTATGATTAGGATGGGCCGCCTTTGCAGTTAATCAGCCACTTGGAAGAGTGTTCTTATCCTCTGTTTTTTGATAAGGGGAAATGTGTTCTTTTCCCTCTTAAGGGGAAAAGTGCTTGTTGCTTCTAAAAAATTATTAGAATAGATTGACTACTTCTTGTTCTGCAGCCGTTCTTCCTCTAGACTCTGTTATATTTGAACCGCTTATGAATCTACTATTATGATCATGGGCAAAGGCCAAGTGGAAACAAATAAAATTCAATTTCTCAAGGAAATAGATAAGCATTAATTGGATTGGCCAACAAACTGAATGCATGATCTTGTCCTGATTGAGTGACCTTTTTTTGTTCTTAAGTATTAATTTCTGGAAGTAAAAAATATTGTGTCAATCCTTACAAGTGGTATTCTTCGGTTTGCAGATGAAAACTCATGGACCCGATATTTATGCTTTGTTCAACAAGAAGTTCTCTTCATTTGCAATATTTGACGGAAAGAATGATTCAAATATCCTCCCTTATCAATGTTCTTCTAAGTACCATGCTAGAGAGCAAGACAAGAAATTTATACTGGGTTTGATGAAGTGGTTGGTTGATCACAAGATCGATACAGGTACTCGCAAGTCACATCACTAGTGCCAACTGCTGAGTGATGCTTATAATAGAATTCTGTGCTAAAAGTACATAACAATTAATTATTTAGCTTCTGAAGGTTGCATAAAGAATGTATCCTATATTGGTGATTCTATTTAGGTGTACATTTCCATTATGGATGTACGGGTAAATATAATATAGTGCATATTTGGTGTAGTTTGAAAGAATTTTCATGAAGAACCCTTGTCACACTTGTTTGACTCGGACGTGTCAAGACAAAGAATGGATCCATATAGCATAGGATGGGCCAGCTAACTTTTCTTCCTGTGAAAGGTGTTTGAGATATGTGTATGCACATGTACCTGTAGCTATATCTAGTTGTTTTAGCTTCTCACATAATCTTAGTTATTGTTACTCTATCCTTCTTTGAACATCAGTTTTTCTTTCAATTGATCCACCAACAAAATCCCTTCCCAGATGCCATTTGTATTCTGGTAGTGCTTTTCCTTTTTCTTTGGTAACTTAATTTATTTTGTTGTTTGAATTTTCGGCAACCTCCCTCAGAATACGATTACAATTTTCTTGGTACTCAGTAGATGCTTCATTTTCTTGATAGATTTGACTGATTTACATTCATTGAAAGAGAT</genome_strand>
        <mrna_strand>TCGGCGAGCACTCTATTTCTCCGACTTACCTCCGGTGACCGTGTTTTCTTCAGAAAA-CGAACTTAAAGGGGAGAAAGTGCAGAAGTTCCTGCAGAAAAATGAATATCAGTAGTAGCCGGGATGACTACAAGTTCCTTCAAATAGTAGATGCCAGGGCTGCACTTGGCCAGAAAGTTAATCTCATCGGCGTCGTTATCGAAACCGGTCTTCCCAAGCAATCCAAGGGCACGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTTGCTCCATTAGGATCATTGATGAGTCCTACCCAAGCCCAGGGATTGCAGTTAATTTTTTTGCCGAAACTATGGATAAGCTTCCTGAAGTGCTGACTGTTGGTGATATAATTCAGATCTCTCAAGTTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAACTCATGGACCCGATATTTATGCTTTGTTCAACAAGAAGTTCTCTTCATTTGCAATATTTGACGGAAAGAATGATTCAAATTTCCTCCCTTATCAATGTTCTTCTAAGTATCATGCAAGAGAGCAAGACAAGAAATTTATACTGGGTTTGATGAAGTGGTTGGTTGATCACAAGATTGATACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGACTGATTTACATTCGTTGAAAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408857" ref_strand="+" ref_description="SGN-E408857 [PPI-12-M2]">
      <seq>ccctaatgtaccttttgtctccttgatgagagctctggcgaatccaaaggtcataggtaaattccactgtgtagttcgagtggtagcggcatttccttggctagctgaagatttccgttccccttctggggtttataggatcaggttgaccctagaggatccaactgcaagaatccatgcatatctgtataaagaggatgcggaacagttttttgacggctacccctctgtttatacattaacaaaaaagaggaatctgttgcttggaacttctgaaggcgatgatggtagtgaaatgaatgatcattttagaaatccaccctggatcaggtgttgcttaaagtcttaccatatcgacgacagtgatagttggggtagtaggaactttcgaatttttgctaccactatgaaagcatangagattgtccattctgtatgcctccagtgctttcaattaatgtaatgtagtttggcctcttctgcaatgtactgaggcagttgctagcaagtagcttagaatgacctaacctatttcttttgcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="106263" stop="109213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106563" g_stop="106611" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106612" i_stop="107612" i_length="1001">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107613" g_stop="107765" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="202" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107766" i_stop="108237" i_length="472">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.794" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108238" g_stop="108544" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="508" r_length="306" r_score="0.919"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108545" i_stop="108874" i_length="330">
            <donor d_prob="0.376" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108875" g_stop="108913" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="545" r_length="37" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E408857" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106563" e_stop="106611"/>
          <exon e_start="107613" e_stop="107765"/>
          <exon e_start="108238" e_stop="108544"/>
          <exon e_start="108875" e_stop="108913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAATGTACCTTTTGTCTCCTTGATGAGAGCTCTGGCTAATCCAAAGGTATCTCAACCACTTTACTGGGCCGCTATTTCCTTCTTTTGCGCTCTTAGTATTCCAAGTATTGAAGATATATTAACACTATCTTTAACAATTTAATTGTTGGACATTGCAAAAAAAACTTGCATCTTTGATTTTTAATTACACATTGGCATCCTAATGCGTTATGTGCTTTCAGTTGATCCTGGCTAGGCTGGAAGAGTGTAGTGATAGCGGGAGTAGTTTTTCTTTGAACCATTTTTTTTCCTCGATGTTGCAAACTACCTTACATCTTCACACTCAAACATTTAACATTTCCTTTGCTTTATAATTGATGCTGAAATGGCTAAAAATCCTATTAAAATGGCAATGCATGATATGCTTTGATCTCTTTAAAGTACCAGTTGACAGTTTATATCAACTGGGTGAATCTTCTGGATACTTGGCAGCGTTAAAGACTAGAGAAAATGTTCGCAGTCAGTTTTAAGTTATTCCTTCCTGATTATTCCATTGATCTGAATGACTTCTCTTTGTAAAGTTGCTTCTTATGGAAATTTCTTTTCTTAGGTCTTAAATAAGAATAATAAGTTTCATTTCTCCTGCTGATTATACTGTATCTGTATTCCACTAGTGATAGTGGAAAAGGAGCGCACGGGAATAATATGTGGGGAAAATTGATGCTTGATGTAGTGCAAGTTTCTTTTTCAGTTTCATCACAGAAGCTATTGAGTTAGGATGATTCTAATAACATTCTTTTTCTTTTGTGCTACATATATGTGATATATGACTTCACACTTTTTATCACTTAACATCATTGAGCTTATTATATGGCTTTTTAACTGTTGTATTTCCTTTTCTTACTGATTTTGATATGTTTTACTTGAGCTGAGAGTCTATTAGAAACAACCTCTACCTTCACAAGGTAGGGGGCTGCATTACACATCACCCTCCTAAACCCAACTTGTGGGATTACACTGGATATGTTGTTGTTTGTTGTTGTACGTCATTGGGCTTATTGCTTGCAGGTCATAGGTAAATTCCACTGTGTAGTTCGAGTGGTAGCGGCATTTCCTTGGCTAGCTGAACATTTCCGTTCCCCTTCTGGGGTTTATAGGATCAGGTTGACCCTAGAGGATCCAACTACAAGAATCCATGCATATCTGTATAAAGAGGATGCGGTAATAATTGTTTGTGTACTTGCAGTCTTTTATCAATCTTTATCGAGTATACTGCAGCACATTAATAGCCATTTAGGGACTGTGTTTAATGACATAGCTCAGTATAAATATGTTCCCTGGACTTGGATATCAGTATTTTATGTATTTGTGAGGATGTATATGACATACCTATGCTCATACTCAACTGTTCGGCTTTGTTATCTTGAAGCAAAATGAAGATTCCTGTGTCATAGTTGTTGATATTGTACAAACAACTATTTACTTGCCAAATCATCCACCAATTGATTTGGGAAATGATGAGATTGTGGCCCTTGAAGATTATGAATGGCAGGCCTCTATGTGCTTACATAAAGACGATATTAAAATATCTGTTGGTTTATATTTATTGCATAAAATTTGCTATACATGCTTGAATTGTTTGAGCTACTAACTTATGAATCTTGGTTTTGACGTGATACTACTATACTCGCAGGAAAAGTTTTTTGACGGCTACCCCTCTGTTTATACATTAACAAAAAAGAGGAATTTGTTGCTTGGAACTTCTGAAGGCGATGATGATAGTGAAATGAATGATCATTTTAGAAATCCACCCTGGATAAGGTGTTGCTTAATGTCTTACCATATCGATGACAATGATGTCTGGGGAAGTAGGAACTTTCGAATTTTTGCTACCACCCTGAAAGCATAGGAGATCGTCCATTCTGTAAGCCTACAGTGCTTCCAATTAATGTTATGCAGTTTGGCCTCTTCTTCAAATGTACCTAGACAGTTGCTAGCAAGTACAGTAAAAAACTCTTAGTTCGAAAAGATAACATCGAAATTTTTGGATGCAGTAAGAAAAGTTAGAGACTTGCTTCAATTAGATTTAATTTTTTTTTAAAAAGACTGAGCACAATAGAATCATATATATATATATATATATATATATATATTTATGATATCGAACACAATAGAATCATATATATTTGTATTTTTAGAGAATTATTAATTTATGATATTAAAGTAACCATATATTCTAAAAATATATTATCTTGTTGAAATTGATGATTAAGTCGGGATCAGAGAAAAATATTATCTTAGAAAGATTATTAATTTATAGAGGTTTTACTGTAGCTTAGAATGACCATAACCTATTTTCTTTTGCTTGT</genome_strand>
        <mrna_strand>CCCTAATGTACCTTTTGTCTCCTTGATGAGAGCTCTGGCGAATCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATAGGTAAATTCCACTGTGTAGTTCGAGTGGTAGCGGCATTTCCTTGGCTAGCTGAAGATTTCCGTTCCCCTTCTGGGGTTTATAGGATCAGGTTGACCCTAGAGGATCCAACTGCAAGAATCCATGCATATCTGTATAAAGAGGATGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGTTTTTTGACGGCTACCCCTCTGTTTATACATTAACAAAAAAGAGGAATCTGTTGCTTGGAACTTCTGAAGGCGATGATGGTAGTGAAATGAATGATCATTTTAGAAATCCACCCTGGATCAGGTGTTGCTTAAAGTCTTACCATATCGACGACAGTGATAGTTGGGGTAGTAGGAACTTTCGAATTTTTGCTACCACTATGAAAGCATANGAGATTGTCCATTCTGTATGCCTCCAGTGCTTTCAATTAATGTAATGTAGTTTGGCCTCTTCTGC-AATGTACTGAGGCAGTTGCTAGCAA..........................................................................................................................................................................................................................................................................................................................................GTAGCTTAGAATGACC-TAACCTA-TTTCTTTTGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430890" ref_strand="-" ref_description="SGN-E430890 [STM-54-B13]">
      <seq>caagaatccatgcatatctgtataaagaggatgcggaacagttttttgacggctacccctctgtttatacattaacaaaaaagaggaatttgttgcttggaacttctgaaggcgatgatggtagtgaaatgaatgatcattttagaaatccaccctggatcaggtgttgcttaaagtcttaccatatcgacgacagtgatagttggggaagtaggaactttcgaatttttgctaccactatgaaagcataggagattgtccattctgtatgcctccagtgctttcaattaatgtaatgtagtttggcctcttctgcaaatgtactgaggcagttgctaacaagtagcttagaatgacctaacctatttcttttgcttctgtaaatgcaatcatgctagcacacaatagctttgctttcatgtagattatgaagctataagctccctatcntttctcagtagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="107431" stop="109262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107731" g_stop="107765" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107766" i_stop="108237" i_length="472">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.794" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108238" g_stop="108544" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="342" r_length="307" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108545" i_stop="108874" i_length="330">
            <donor d_prob="0.376" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108875" g_stop="108967" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="0.849"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E430890" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430890" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107731" e_stop="107765"/>
          <exon e_start="108238" e_stop="108544"/>
          <exon e_start="108875" e_stop="108967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCCATGCATATCTGTATAAAGAGGATGCGGTAATAATTGTTTGTGTACTTGCAGTCTTTTATCAATCTTTATCGAGTATACTGCAGCACATTAATAGCCATTTAGGGACTGTGTTTAATGACATAGCTCAGTATAAATATGTTCCCTGGACTTGGATATCAGTATTTTATGTATTTGTGAGGATGTATATGACATACCTATGCTCATACTCAACTGTTCGGCTTTGTTATCTTGAAGCAAAATGAAGATTCCTGTGTCATAGTTGTTGATATTGTACAAACAACTATTTACTTGCCAAATCATCCACCAATTGATTTGGGAAATGATGAGATTGTGGCCCTTGAAGATTATGAATGGCAGGCCTCTATGTGCTTACATAAAGACGATATTAAAATATCTGTTGGTTTATATTTATTGCATAAAATTTGCTATACATGCTTGAATTGTTTGAGCTACTAACTTATGAATCTTGGTTTTGACGTGATACTACTATACTCGCAGGAAAAGTTTTTTGACGGCTACCCCTCTGTTTATACATTAACAAAAAAGAGGAATTTGTTGCTTGGAACTTCTGAAGGCGATGATGATAGTGAAATGAATGATCATTTTAGAAATCCACCCTGGATAAGGTGTTGCTTAATGTCTTACCATATCGATGACAATGATGTCTGGGGAAGTAGGAACTTTCGAATTTTTGCTACCACCCTGAAAGCATAGGAGATCGTCCATTCTGTAAGCCTACAGTGCTTCCAATTAATGTTATGCAGTTTGGCCTCTTCTTCAAATGTACCTAGACAGTTGCTAGCAAGTACAGTAAAAAACTCTTAGTTCGAAAAGATAACATCGAAATTTTTGGATGCAGTAAGAAAAGTTAGAGACTTGCTTCAATTAGATTTAATTTTTTTTTAAAAAGACTGAGCACAATAGAATCATATATATATATATATATATATATATATATTTATGATATCGAACACAATAGAATCATATATATTTGTATTTTTAGAGAATTATTAATTTATGATATTAAAGTAACCATATATTCTAAAAATATATTATCTTGTTGAAATTGATGATTAAGTCGGGATCAGAGAAAAATATTATCTTAGAAAGATTATTAATTTATAGAGGTTTTACTGTAGCTTAGAATGACCATAACCTATTTTCTTTTGCTTGTGTAGATGTTATCATCCTTGCACACAAATAGGTTTGCTTTCATGTAGTGAAAGAA</genome_strand>
        <mrna_strand>CAAGAATCCATGCATATCTGTATAAAGAGGATGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGTTTTTTGACGGCTACCCCTCTGTTTATACATTAACAAAAAAGAGGAATTTGTTGCTTGGAACTTCTGAAGGCGATGATGGTAGTGAAATGAATGATCATTTTAGAAATCCACCCTGGATCAGGTGTTGCTTAAAGTCTTACCATATCGACGACAGTGATAGTTGGGGAAGTAGGAACTTTCGAATTTTTGCTACCACTATGAAAGCATAGGAGATTGTCCATTCTGTATGCCTCCAGTGCTTTCAATTAATGTAATGTAGTTTGGCCTCTTCTGCAAATGTACTGAGGCAGTTGCTAACAA..........................................................................................................................................................................................................................................................................................................................................GTAGCTTAGAATGACC-TAACCTA-TTTCTTTTGCTTCTGTAAATGCAATCATGCTAGCACAC-AATAGCTTTGCTTTCATGTAGATTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462753" ref_strand="+" ref_description="SGN-E462753 [cPRO-12-J11]">
      <seq>caagaatccatgcatatctgtataaagaggatgcggaacagttttttgacggctacccctctgtttatacattaacaaaaaagaggaatttgttgcttggaacttctgaaggcgatgatggtagtgaaatgaatgatcattttagaaatccaccctggatcaggtgttgcttaaagtcttaccatatcgacgacagtgatagttggggaagtaggaactttcgaatttttgctaccactatgaaagcataggagattgtccattctgtatgcctccagtgctttcaattaatgtaatgtagtttggcctcttctgcaaatgtactgaggcagttgctaacaagtagcttagaatgacctaacctatttcttttgcttctgtaaatgcaatcatgctagcacacaatagctttgctttcatgtagataaagaagcttaaagctccctatcattatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="107431" stop="109268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107731" g_stop="107765" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107766" i_stop="108237" i_length="472">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.794" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108238" g_stop="108544" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="342" r_length="307" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108545" i_stop="108874" i_length="330">
            <donor d_prob="0.376" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108875" g_stop="108967" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="467"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E462753" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107731" e_stop="107765"/>
          <exon e_start="108238" e_stop="108544"/>
          <exon e_start="108875" e_stop="108967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCCATGCATATCTGTATAAAGAGGATGCGGTAATAATTGTTTGTGTACTTGCAGTCTTTTATCAATCTTTATCGAGTATACTGCAGCACATTAATAGCCATTTAGGGACTGTGTTTAATGACATAGCTCAGTATAAATATGTTCCCTGGACTTGGATATCAGTATTTTATGTATTTGTGAGGATGTATATGACATACCTATGCTCATACTCAACTGTTCGGCTTTGTTATCTTGAAGCAAAATGAAGATTCCTGTGTCATAGTTGTTGATATTGTACAAACAACTATTTACTTGCCAAATCATCCACCAATTGATTTGGGAAATGATGAGATTGTGGCCCTTGAAGATTATGAATGGCAGGCCTCTATGTGCTTACATAAAGACGATATTAAAATATCTGTTGGTTTATATTTATTGCATAAAATTTGCTATACATGCTTGAATTGTTTGAGCTACTAACTTATGAATCTTGGTTTTGACGTGATACTACTATACTCGCAGGAAAAGTTTTTTGACGGCTACCCCTCTGTTTATACATTAACAAAAAAGAGGAATTTGTTGCTTGGAACTTCTGAAGGCGATGATGATAGTGAAATGAATGATCATTTTAGAAATCCACCCTGGATAAGGTGTTGCTTAATGTCTTACCATATCGATGACAATGATGTCTGGGGAAGTAGGAACTTTCGAATTTTTGCTACCACCCTGAAAGCATAGGAGATCGTCCATTCTGTAAGCCTACAGTGCTTCCAATTAATGTTATGCAGTTTGGCCTCTTCTTCAAATGTACCTAGACAGTTGCTAGCAAGTACAGTAAAAAACTCTTAGTTCGAAAAGATAACATCGAAATTTTTGGATGCAGTAAGAAAAGTTAGAGACTTGCTTCAATTAGATTTAATTTTTTTTTAAAAAGACTGAGCACAATAGAATCATATATATATATATATATATATATATATATTTATGATATCGAACACAATAGAATCATATATATTTGTATTTTTAGAGAATTATTAATTTATGATATTAAAGTAACCATATATTCTAAAAATATATTATCTTGTTGAAATTGATGATTAAGTCGGGATCAGAGAAAAATATTATCTTAGAAAGATTATTAATTTATAGAGGTTTTACTGTAGCTTAGAATGACCATAACCTATTTTCTTTTGCTTGTGTAGATGTTATCATCCTTGCACACAAATAGGTTTGCTTTCATGTAGTGAAAGAA</genome_strand>
        <mrna_strand>CAAGAATCCATGCATATCTGTATAAAGAGGATGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGTTTTTTGACGGCTACCCCTCTGTTTATACATTAACAAAAAAGAGGAATTTGTTGCTTGGAACTTCTGAAGGCGATGATGGTAGTGAAATGAATGATCATTTTAGAAATCCACCCTGGATCAGGTGTTGCTTAAAGTCTTACCATATCGACGACAGTGATAGTTGGGGAAGTAGGAACTTTCGAATTTTTGCTACCACTATGAAAGCATAGGAGATTGTCCATTCTGTATGCCTCCAGTGCTTTCAATTAATGTAATGTAGTTTGGCCTCTTCTGCAAATGTACTGAGGCAGTTGCTAACAA..........................................................................................................................................................................................................................................................................................................................................GTAGCTTAGAATGACC-TAACCTA-TTTCTTTTGCTTCTGTAAATGCAATCATGCTAGCACAC-AATAGCTTTGCTTTCATGTAGATAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721781" ref_strand="+" ref_description="SGN-E721781 [FC15BB09]">
      <seq>gctctagcaaggagttagcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnnnaacccccccaaagggggcccctttttttttttttggggcccccaaaaaaggggggggaaaaagggggaaaaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111689" stop="9874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111390" g_stop="111348" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="160" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="342" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109774" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="617" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109773" i_stop="109670" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109669" g_stop="109655" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="632" r_length="15" r_score="0.733"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109654" i_stop="109028" i_length="627">
            <donor d_prob="0.611" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109027" g_stop="108995" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="665" r_length="33" r_score="0.636"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108994" i_stop="108914" i_length="81">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108913" g_stop="108896" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="683" r_length="18" r_score="0.667"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="108895" i_stop="108644" i_length="252">
            <donor d_prob="0.380" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.48"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="108643" g_stop="108579" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="748" r_length="65" r_score="0.462"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="108578" i_stop="108263" i_length="316">
            <donor d_prob="0.000" d_score="0.42"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="108262" g_stop="108239" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="772" r_length="24" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E721781" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111390" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109774"/>
          <exon e_start="109669" e_stop="109655"/>
          <exon e_start="109027" e_stop="108995"/>
          <exon e_start="108913" e_stop="108896"/>
          <exon e_start="108643" e_stop="108579"/>
          <exon e_start="108262" e_stop="108239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTAGCAAGGAGTTAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAGAAGAAAGTATATTTCTAAATTGCTTAAGTTGCTTGGGAATTGCTTACGATATTATAAGTACCACAATGACTTGCAATAGATGTCAATGCAACAAACCTTGACAAACTATAAAACTTGGAATATTTTCTCTGAACTTACTGTTGTGTGGGTTTTTTTTGGTATCAAGAGATCATATATTGTTTCGTATTTGTATACTGGATTTTGTTTCTTTATCATATTTGTTTGGTGCAAATTTGCATCTTCTATTCAACTGTCAAAGTAAGAAACTATTAGCTTCCAATCTACCTGTTTTGTAGCAATGTTGATATTGTATTGATAGATGGCAGCACTTGTGCTATTCTGTGTAGTTGAATAGACGAATAAATCATTGGTTTCTAACACTTCAACACAGCAAATTCGAACTATCTGATGGTAGTCTGCAGTCGAGTATATTTTCTGTGCATCTTGTAATTTCCTCAGTGAACTACTTGATACTTTCTTTCATTGTTCAGGACGTTCTATTTCTAAAAAGCTTCAGTAACTGTTTTCTTGAAACAACTACCATGCATATTGACCTCTCAGCCAAGTGATTCATGGGAATGAAGTAGTCTCAACTCCCACATGGATGGTTCTAGCAGACGTTTTATATGATACCAAAAGGAAATAAAAGAAACGGCAATGAAGAAAGTTTAGTATTGACAGGGAGTATCGTACTTCTTTCACTACATGAAAGCAAACCTATTTGTGTGCAAGGATGATAACATCTACACAAGCAAAAGAAAATAGGTTATGGTCATTCTAAGCTACAGTAAAACCTCTATAAATTAATAATCTTTCTAAGATAATATTTTTCTCTGATCCCGACTTAATCATCAATTTCAACAAGATAATATATTTTTAGAATATATGGTTACTTTAATATCATAAATTAATAATTCTCTAAAAATACAAATATATATGATTCTATTGTGTTCGATATCATAAATATATATATATATATATATATATATATATGATTCTATTGTGCTCAGTCTTTTTAAAAAAAAATTAAATCTAATTGAAGCAAGTCTCTAACTTTTCTTACTGCATCCAAAAATTTCGATGTTATCTTTTCGAACTAAGAGTTTTTTACTGTACTTGCTAGCAACTGTCTAGGTACATTTGAAGAAGAGGCCAAACTGCATAACATTAATTGGAAGCACTGTAGGCTTACAGAATGGACGATCTCCTATGCTTTCAGGGTGGTAGCAAAAATTCGAAAGTTCCTACTTCCCCAGACATCATTGTCATCGATATGGTAAGACATTAAGCAACACCTTATCCAGGGTGGATTTCTAAAATGATCATTCATTTCACTATCATCATCGCCTTCAGAAGTTCCAAGCAACAAATTCCTCTTTTTTGTTAATGTATAAACAGAGGGGTAGCCGTCAAAAAACTTTT</genome_strand>
        <mrna_strand>GCTCTAGCAAGGAGTTAGCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTA........................................................................................................AAAAAAAAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.................................................................................AAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................AAAAAAANNNNNAACCCCCCCAAAGGGGGCCCCTTTTTTTTTTTTTGGGGCCCCCAAAAAAGGGG............................................................................................................................................................................................................................................................................................................................GGGGAAAAAGGGGGAAAAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545209" ref_strand="+" ref_description="SGN-E545209 [TUS-67-P2](-)">
      <seq>agaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaagaaaaaaaaaaaaactcgaggggggcccgtacccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111518" stop="5326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111218" g_stop="111151" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="250" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="522" r_length="272" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109776" i_stop="109365" i_length="412">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.562" a_score="0.40"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109364" g_stop="109322" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="565" r_length="43" r_score="0.395"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E545209" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111218" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
          <exon e_start="109364" e_stop="109322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAGAAGAAAGTATATTTCTAAATTGCTTAAGTTGCTTGGGAATTGCTTACGATATTATAAGTACCACAATGACTTGCAATAGATGTCAATGCAACAAACCTTGACAAACTATAAAACTTGGAATATTTTCTCTGAACTTACTGTTGTGTGGGTTTTTTTTGGTATCAAGAGATCATATATTGTTTCGTATTTGTATACTGGATTTTGTTTCTTTATCATATTTGTTTGGTGCAAATTTGCATCTTCTATTCAACTGTCAAAGTAAGAAACTATTAGCTTCCAATCTACCTGTTTTGTAGCAATGTTGATATTGTATTGATAGATGGCAGCACTTGTGCTATT</genome_strand>
        <mrna_strand>AGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAAAAAAAAAAAAACTCGAGGGGGGCCCGTACCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712013" ref_strand="+" ref_description="SGN-E712013 [FB03CE12]">
      <seq>ccatcaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttgtggtgataaagtagctgtggtcatgttaattctgtcaaatctgcgtaatttactctggatgatgaggttgaatgttgacgcagctctttgttgcacaatcaaaagaagaaagtatatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111545" stop="109346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111246" g_stop="111151" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="278" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109646" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="681" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E712013" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111246" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAGAAGAAAGTATATTTC</genome_strand>
        <mrna_strand>CCATCAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAGAAGAAAGTATATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713976" ref_strand="+" ref_description="SGN-E713976 [FB10AG02]">
      <seq>cactacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttgtggtgataaagtagctgtggtcatgttaattctgtcaaatctgcgtaatttactctggatgatgaggttgaatgttgacgcagctctttgttgcacaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111549" stop="109355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111250" g_stop="111151" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="282" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109656" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="675" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E713976" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111250" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAGAAGAA</genome_strand>
        <mrna_strand>CACTACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459275" ref_strand="+" ref_description="SGN-E459275 [cPRO-27-I16]">
      <seq>agaaaccctagttccaaaggtaaggtaaggtagaacttcaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggtttattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcacagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttctcgaagtggattttgatacatcctattgctatcaaatgcttaaattttcagattttagtacaccttttgtggtgacaaagtggctacggtcatgttaattctgtncatcttcgtaatttactctgaatgatgatgttgaatgtcgacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111578" stop="109387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111363" g_stop="111348" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="133" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="315" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109700" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="665" r_length="350" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="687"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E459275" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111363" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACC-TTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAG</genome_strand>
        <mrna_strand>AGAAACCCTAGTTCCA................................................................................AAGGTAAGGTAAGGTAGAACTTCAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTTATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCACAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCTCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTTGTGGTGACAAAGTGGCTACGGTCATGTTAATTCTGT-NCATCTTCGTAATTTACTCTGAATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307650" ref_strand="+" ref_description="SGN-E307650 [cLEY-16-L7]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttgtggtgacgaagtagctgtggtcatgctaattctgtctaatcttcgtaatttactctgaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111668" stop="109404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111368" g_stop="111348" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109704" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="665" r_length="345" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E307650" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111368" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGA</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGACGAAGTAGCTGTGGTCATGCTAATTCTGTCTAATCTTCGTAATTTACTCTGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353897" ref_strand="+" ref_description="SGN-E353897 [cTOS-10-I10]">
      <seq>tagagtgaggagaaagtcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttgtggtgacgaagtagctgtggtcatgctaattctgtctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110602" stop="109427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110302" g_stop="110153" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109718" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="480" r_length="331" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E353897" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110302" e_stop="110153"/>
          <exon e_start="110048" e_stop="109718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAA</genome_strand>
        <mrna_strand>TAGAGTGAGGAGAAAGT-CAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGACGAAGTAGCTGTGGTCATGCTAATTCTGTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454937" ref_strand="+" ref_description="SGN-E454937 [cSTS-24-H10]">
      <seq>agcagaaaccctagttccaaaggtaaggtaaggtagaacttcaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggtttattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcacagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagattagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttctcgaagtggattttgatacatcctattgctatcaaatgcttaaattttcagattttagtacaccttttgtggtgacaaagtggctacggtcatgttaattctgtcaatctttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111666" stop="109424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111366" g_stop="111348" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="136" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="318" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109720" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="649" r_length="331" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E454937" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111366" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACC-TTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGT</genome_strand>
        <mrna_strand>AGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGGTAAGGTAGAACTTCAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTTATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCACAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATTAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCTCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTTGTGGTGACAAAGTGGCTACGGTCATGTTAATTCTGTCAATCTTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310216" ref_strand="+" ref_description="SGN-E310216 [cLEZ-8-L4]">
      <seq>gaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttgtggtgacgaagtagctgtggtcatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111578" stop="109438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111362" g_stop="111348" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="132" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="314" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109738" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="625" r_length="311" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E310216" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111362" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTA</genome_strand>
        <mrna_strand>GAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGACGAAGTAGCTGTGGTCATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620794" ref_strand="-" ref_description="SGN-E620794 [71499]">
      <seq>agaggaaaggaagaagaattagagcagaaaccctagttccaaaggtaaggtaaggtagaaccttcaacaatggccgtgcctctgcttaccaagaaggtcgtgaagaagagagtgaagaggtttattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagaccccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcacagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttctcgaagtggattttgatacatcctattgctatcaaatgcttaaattttcagattttagtacaccttttgtggtgacaaagtggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111666" stop="109450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111364" g_stop="111348" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="41" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="159" r_length="118" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="342" r_length="183" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109750" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="643" r_length="301" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E620794" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620794" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111364" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAA-CAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGA-CCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACC-TTTGTGGTGATAAAGTAGCT</genome_strand>
        <mrna_strand>CAGAAACCCTAGTTCCA................................................................................AAGGTAAGGTAAGGTAGAACCTTCAACAATGGCCGTGCCTCTGCTTACCAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTTATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCACAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCTCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTTGTGGTGACAAAGTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735292" ref_strand="+" ref_description="SGN-E735292 [LB14DG08]">
      <seq>tatcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttgtggtgataaagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111675" stop="109453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111375" g_stop="111348" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="145" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="327" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109753" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="623" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="624" polyA_stop="633"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E735292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111375" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTA</genome_strand>
        <mrna_strand>TATCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303651" ref_strand="+" ref_description="SGN-E303651 [cLEY-6-I5]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttgtggtgacgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111668" stop="109456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111368" g_stop="111348" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109761" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="608" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="612" polyA_stop="621"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E303651" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111368" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTG</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303604" ref_strand="+" ref_description="SGN-E303604 [cLEY-6-I5](-)">
      <seq>gtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaggacacctttgtggtgacgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110612" stop="109456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110312" g_stop="110153" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109761" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="448" r_length="288" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E303604" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110312" e_stop="110153"/>
          <exon e_start="110048" e_stop="109761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTG</genome_strand>
        <mrna_strand>GTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGGACACCTTTGTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719653" ref_strand="+" ref_description="SGN-E719653 [FC08CA02]">
      <seq>aagaatccctgtcaaggaaagctggctcatacccaagggtattgattctaaagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaacaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctaccgagcttgagatcctaatgatgcacaacagaacttactgtgcaaaaatcgcacacaatgtttccactacgaagaggaaagagattgtcaagcgagctgcccaacttgatgttgtcgtaacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcacattttaatacacctttgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110642" stop="109462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="198" r_length="182" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109762" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="485" r_length="287" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E719653" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGT</genome_strand>
        <mrna_strand>GAAAGCTGGCTCATACCCAAGGGTATTGATTCTAAAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAACAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTACCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAAAAATCGCACACAATGTTTCCACTACGAAGAGGAAAGAGATTGTCAAGCGAGCTGCCCAACTTGATGTTGTCGTAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCACATTTTAATACACCTTTGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711393" ref_strand="+" ref_description="SGN-E711393 [FB01DE11]">
      <seq>gttagcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111677" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111377" g_stop="111348" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="147" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="329" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109766" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="612" r_length="283" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E711393" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111377" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTG</genome_strand>
        <mrna_strand>GTTAGCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338382" ref_strand="+" ref_description="SGN-E338382 [cTOE-15-C7]">
      <seq>gcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111665" stop="109466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111365" g_stop="111348" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="135" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="317" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109766" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="600" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E338382" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111365" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTG</genome_strand>
        <mrna_strand>GCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339996" ref_strand="+" ref_description="SGN-E339996 [cTOF-3-M15]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111668" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111368" g_stop="111348" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109769" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="600" r_length="280" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E339996" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111368" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCT</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558981" ref_strand="+" ref_description="SGN-E558981 [18407]">
      <seq>ctgcttaacaagaaggtcgtgaagaagagagtgaagaggtttattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcccagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttcccgaagtggattttgatacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111528" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111228" g_stop="111151" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="260" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109770" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="540" r_length="280" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E558981" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111228" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACC</genome_strand>
        <mrna_strand>CTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTTATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCCCAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCCCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E563149" ref_strand="+" ref_description="SGN-E563149 [1502]">
      <seq>attcggcacgagggtttattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcccagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttcccgaagtggattttgatacatcctattgctatcaaatgcttaaattttcagattttaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111495" stop="109477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111204" g_stop="111151" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.815"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.86"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="235" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109771" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="513" r_length="278" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E563149" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E563149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111204" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACAC</genome_strand>
        <mrna_strand>ATTCGGCACGAG-GGTTTATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCCCAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCCCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA-AACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716720" ref_strand="+" ref_description="SGN-E716720 [FB17DD07]">
      <seq>gttagcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111677" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111377" g_stop="111348" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="147" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="329" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109772" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="606" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="607" polyA_stop="616"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E716720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111377" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACA</genome_strand>
        <mrna_strand>GTTAGCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284041" ref_strand="+" ref_description="SGN-E284041 [cLER-13-K9]">
      <seq>aaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattggtttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111578" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111361" g_stop="111348" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="131" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="313" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109772" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="590" r_length="277" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="606"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E284041" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111361" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACA</genome_strand>
        <mrna_strand>AAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGGTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589842" ref_strand="+" ref_description="SGN-E589842 [43425]">
      <seq>cacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcacagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttctcgaagtggattttgatacatcctattgctatcaaatgcttaaattttcagattttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110351" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110160" g_stop="110153" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109772" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="286" r_length="278" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E589842" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110160" e_stop="110153"/>
          <exon e_start="110048" e_stop="109772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACA</genome_strand>
        <mrna_strand>CACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCACAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCTCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738617" ref_strand="+" ref_description="SGN-E738617 [LC14BD02]">
      <seq>gcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111673" stop="109482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111373" g_stop="111348" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="143" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="325" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109774" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="600" r_length="275" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E738617" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111373" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTA</genome_strand>
        <mrna_strand>GCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309161" ref_strand="+" ref_description="SGN-E309161 [cLEZ-12-C5]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtataacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggcttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111668" stop="109474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111368" g_stop="111348" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109774" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="594" r_length="274" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E309161" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111368" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTA</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTATAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGC-TTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297304" ref_strand="+" ref_description="SGN-E297304 [cLET-29-B10]">
      <seq>agcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111666" stop="109477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111366" g_stop="111348" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="136" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="318" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109774" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="593" r_length="275" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E297304" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111366" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTA</genome_strand>
        <mrna_strand>AGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293301" ref_strand="+" ref_description="SGN-E293301 [cLET-18-H13]">
      <seq>tagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagaatttagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111577" stop="109474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111355" g_stop="111348" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="125" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="307" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109774" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="582" r_length="275" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E293301" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111355" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTA</genome_strand>
        <mrna_strand>TAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGAATTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295398" ref_strand="+" ref_description="SGN-E295398 [cLET-23-F17]">
      <seq>ctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaaatggattttgacacatcctattgctatcaaatgcttaaattttcagattttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111669" stop="109476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111369" g_stop="111348" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="139" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="321" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109776" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="594" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E295398" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111369" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAG</genome_strand>
        <mrna_strand>CTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAATGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723636" ref_strand="+" ref_description="SGN-E723636 [FC21AG01]">
      <seq>gggcgattggcggccaatcggccgaattgctctctagcaaggagttagcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111691" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111392" g_stop="111348" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="73" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="190" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="372" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="644" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="684"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E723636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111392" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTAGCAAGGAGTTAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GCTCTCTAGCAAGGAGTTAGCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716836" ref_strand="+" ref_description="SGN-E716836 [FB18AF12]">
      <seq>gttagcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctaccaaatgcttaaattttcagattttaannnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111677" stop="109477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111377" g_stop="111348" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="147" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="329" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="601" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="647"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E716836" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111377" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GTTAGCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTACCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355517" ref_strand="+" ref_description="SGN-E355517 [cTOS-25-I12]">
      <seq>ttagcggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111676" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111376" g_stop="111348" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="146" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="328" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="600" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E355517" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111376" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>TTAGCGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340244" ref_strand="+" ref_description="SGN-E340244 [cTOF-2-N21]">
      <seq>agcggctcagcagaaaccctagttccaaagtaagacaaggtagaacaacacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagaagagtgaaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtgggatttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111674" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111374" g_stop="111348" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="144" r_length="117" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="326" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="598" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="618"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E340244" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111374" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAG-AGAGTG-AAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>AGCGGCTCAGCAGAAACCCTAGTTCCA................................................................................AA-GTAAGACAAGGTAGAACAAC-ACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAAGAGTGAAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGGATTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312648" ref_strand="+" ref_description="SGN-E312648 [cLEZ-20-F8]">
      <seq>gcggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaagaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111673" stop="109482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111373" g_stop="111348" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="143" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="325" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="597" r_length="272" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E312648" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111373" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GCGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAAGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348517" ref_strand="+" ref_description="SGN-E348517 [cTOF-30-H15]">
      <seq>cggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaataatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111672" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111372" g_stop="111348" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="142" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="324" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="595" r_length="271" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="596" polyA_stop="611"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E348517" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111372" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAA-TAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342953" ref_strand="+" ref_description="SGN-E342953 [cTOF-11-O4]">
      <seq>cggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111672" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111372" g_stop="111348" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="142" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="324" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="596" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="608"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E342953" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111372" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711158" ref_strand="+" ref_description="SGN-E711158 [FB01AF12]">
      <seq>cgcttgcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111665" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111371" g_stop="111348" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="140" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="322" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="594" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E711158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111371" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CGCT-TGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344797" ref_strand="+" ref_description="SGN-E344797 [cTOF-21-J22]">
      <seq>ctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111669" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111369" g_stop="111348" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="139" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="321" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="593" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="596" polyA_stop="608"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E344797" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111369" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716415" ref_strand="+" ref_description="SGN-E716415 [FB17AA01]">
      <seq>ctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtccctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111669" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111369" g_stop="111348" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="139" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="321" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="593" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="604"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E716415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111369" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTCCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734147" ref_strand="+" ref_description="SGN-E734147 [LB11DF06]">
      <seq>ctcttcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111669" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111369" g_stop="111348" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="139" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="321" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="593" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="607"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E734147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111369" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CTCTTCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355172" ref_strand="+" ref_description="SGN-E355172 [cTOS-18-O14]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgctttaattttcagattttagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111668" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111368" g_stop="111348" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="592" r_length="272" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="609"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E355172" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111368" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTTAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348753" ref_strand="+" ref_description="SGN-E348753 [cTOF-29-M5]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111668" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111368" g_stop="111348" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="592" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="608"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E348753" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111368" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355038" ref_strand="+" ref_description="SGN-E355038 [cTOS-19-L12]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111668" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111368" g_stop="111348" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="592" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="606"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E355038" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111368" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732480" ref_strand="+" ref_description="SGN-E732480 [LB02BB08]">
      <seq>gtattacgtctatttcgcagaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111587" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111287" g_stop="111151" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="319" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="591" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="604"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E732480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111287" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545210" ref_strand="+" ref_description="SGN-E545210 [TUS-67-P2]">
      <seq>ggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111555" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111255" g_stop="111151" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="287" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="559" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E545210" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111255" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310132" ref_strand="+" ref_description="SGN-E310132 [cLEZ-8-E5]">
      <seq>gtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111554" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111254" g_stop="111151" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="286" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="558" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="568"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E310132" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111254" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302773" ref_strand="+" ref_description="SGN-E302773 [cLEY-1-M9](-)">
      <seq>cgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatgggtttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111511" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111211" g_stop="111151" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="244" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="516" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="517" polyA_stop="526"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E302773" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111211" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAAT-GGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGGTTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298973" ref_strand="+" ref_description="SGN-E298973 [cLET-42-M8]">
      <seq>gttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtgttagtgtttgaacctgttccttttgctttgtttaattaatacatctgttttctccgaagtggattttgacacatncctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111490" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111190" g_stop="111151" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="222" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="497" r_length="275" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="511"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E298973" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111190" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATAC-TCTGTTTTC-CCGAAGTGGATTTTGACACAT-CCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTGTTAGTGTTTGAACCTGTTCCTTTTGCTTTGTTTAATTAATACATCTGTTTTCTCCGAAGTGGATTTTGACACATNCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230215" ref_strand="+" ref_description="SGN-E230215 [cLEL-33-P19](-)">
      <seq>tgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110642" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110342" g_stop="110153" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="461" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="477"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E230215" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110342" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>TGTTA-AGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352164" ref_strand="+" ref_description="SGN-E352164 [cTOS-13-E4]">
      <seq>cgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110642" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="200" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="472" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="484"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E352164" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226528" ref_strand="+" ref_description="SGN-E226528 [cLEL-26-H6](-)">
      <seq>ggcgcagacccaagggtattgattctagagtgagaagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaaaaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagaattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110627" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110327" g_stop="110153" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="447" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="464"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E226528" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110327" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGAAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAAAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218525" ref_strand="+" ref_description="SGN-E218525 [cLEL-18-C15](-)">
      <seq>agacccaagggtattgattctagagtaaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110622" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110322" g_stop="110153" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="442" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="458"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E218525" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110322" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>AGACCCAAGGGTATTGATTCTAGAGTAAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226712" ref_strand="+" ref_description="SGN-E226712 [cLEL-26-I4](-)">
      <seq>agacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110622" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110322" g_stop="110153" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="442" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="445" polyA_stop="462"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E226712" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110322" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>AGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226327" ref_strand="+" ref_description="SGN-E226327 [cLEL-26-I4](-)">
      <seq>gacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110621" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110321" g_stop="110153" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="441" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="461"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E226327" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110321" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222262" ref_strand="+" ref_description="SGN-E222262 [cLEL-16-D1](-)">
      <seq>atgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatccntaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttcccctaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110578" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110278" g_stop="110153" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="399" r_length="272" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="416"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E222262" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110278" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCC-TAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>ATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCNTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCCCTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217869" ref_strand="+" ref_description="SGN-E217869 [cLEL-23-J7](-)">
      <seq>gtgtcttgatgcccaatattggatacgggtcagacaaaaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110576" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110276" g_stop="110153" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="397" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="398" polyA_stop="414"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E217869" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110276" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAA-TGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAAAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229993" ref_strand="+" ref_description="SGN-E229993 [cLEL-33-P19](-)">
      <seq>tgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110567" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110267" g_stop="110153" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="387" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="403"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E229993" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110267" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>TGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216327" ref_strand="+" ref_description="SGN-E216327 [cLEL-13-C2](-)">
      <seq>ctcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110534" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110234" g_stop="110153" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="354" r_length="272" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="373"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E216327" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110234" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232444" ref_strand="+" ref_description="SGN-E232444 [cLEL-5-G1](-)">
      <seq>tatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagntttaagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110526" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110226" g_stop="110153" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="346" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="366"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E232444" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110226" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>TATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGNTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218225" ref_strand="+" ref_description="SGN-E218225 [cLEL-23-J7](-)">
      <seq>agttcgttgtgcataatgctagcgagcttgagatccttaatgatgcacaacagaaccttactgtgcagaaatcgncacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110504" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110204" g_stop="110153" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109777" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="327" r_length="274" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="328" polyA_stop="344"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E218225" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110204" e_stop="110153"/>
          <exon e_start="110048" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCC-TAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAA-CTTACTGTGCAGAAATCG-CACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>AGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTTAATGATGCACAACAG........................................................................................................AACCTTACTGTGCAGAAATCGNCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232368" ref_strand="+" ref_description="SGN-E232368 [cLEL-5-G1](-)">
      <seq>actgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110343" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110043" g_stop="109777" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="270" polyA_stop="287"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E232368" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110043" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>ACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222679" ref_strand="+" ref_description="SGN-E222679 [cLEL-16-D1](-)">
      <seq>ccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccagtaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgatccttatgttttgtttaattaaaactctgttgtccccaagtggattttgacacatcctattgctatcaaatgcttaaattttcagaatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110279" stop="109472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109979" g_stop="109777" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="204" polyA_stop="220"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E222679" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109979" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGTAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGATCCTTATGTTTTGTTTAATTAAAACTCTGTTGTCCCCAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597319" ref_strand="-" ref_description="SGN-E597319 [40820]">
      <seq>caagaagacttcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcacagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttctcgaagtggattttgatacatcctattgctatcaaatgcttaaattttcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110542" stop="109481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110242" g_stop="110153" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109781" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="360" r_length="269" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E597319" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597319" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110242" e_stop="110153"/>
          <exon e_start="110048" e_stop="109781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGAC-TCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGAT</genome_strand>
        <mrna_strand>CAAGAAGACTTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCACAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCTCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733216" ref_strand="+" ref_description="SGN-E733216 [LB04BB08]">
      <seq>ggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111671" stop="109482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111371" g_stop="111348" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="141" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="323" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109783" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="589" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="606"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E733216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111371" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAG</genome_strand>
        <mrna_strand>GGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727967" ref_strand="+" ref_description="SGN-E727967 [LA16BB08]">
      <seq>gctctttataaaccctaattcgaaaggtaggacaaggtagaacatctacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattacacctcagagtgaccgaacaatcactgtcaaggaaagctggcgcatacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccgggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcaaaaaaaaaacctcaaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111578" stop="109482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111370" g_stop="111348" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.783"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="140" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.572" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="322" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109783" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="588" r_length="266" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E727967" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111370" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAG</genome_strand>
        <mrna_strand>GCTCTTTATAAACCCTAATTCGA................................................................................AAGGTAGGACAAGGTAGAACATCTACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTACACCTCAGAGTGACCGAACAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCATACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCGGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324616" ref_strand="+" ref_description="SGN-E324616 [cTOC-9-K9]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttccgaanaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111668" stop="109482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111368" g_stop="111348" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109783" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="586" r_length="266" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="587" polyA_stop="599"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E324616" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111368" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAG</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221515" ref_strand="+" ref_description="SGN-E221515 [cLEL-10-D23](-)">
      <seq>gaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110591" stop="109482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110291" g_stop="110153" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109783" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="405" r_length="266" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="420"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E221515" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110291" e_stop="110153"/>
          <exon e_start="110048" e_stop="109783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAG</genome_strand>
        <mrna_strand>GAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221918" ref_strand="+" ref_description="SGN-E221918 [cLEL-10-D23](-)">
      <seq>cttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaaatatgcacaacagaaccttactgtgcagaaatcgccacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110512" stop="109482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110212" g_stop="110153" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110048" g_stop="109783" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="328" r_length="268" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="343"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E221918" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110212" e_stop="110153"/>
          <exon e_start="110048" e_stop="109783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAA-CTTACTGTGCAGAAATCGC-ACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAG</genome_strand>
        <mrna_strand>CTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAAATATGCACAACAG........................................................................................................AACCTTACTGTGCAGAAATCGCCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586243" ref_strand="+" ref_description="SGN-E586243 [60296]">
      <seq>aacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcccagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttcccgaagtggattttgatacatcctattgctatcaaatgcttaaattttcaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="110348" stop="109482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110048" g_stop="109783" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="268" polyA_stop="285"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E586243" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110048" e_stop="109783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGT-TTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAG</genome_strand>
        <mrna_strand>AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCCCAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCCCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615077" ref_strand="-" ref_description="SGN-E615077 [64872]">
      <seq>gcttagcagaaaccctagttccaaaggtaaggtaaggtagaacttcaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggtttattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcacagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttctcgaagtggattttgatacatcctattgctatcaaatgcttaaattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111670" stop="109484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111370" g_stop="111348" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="140" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="322" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109784" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="588" r_length="266" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E615077" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615077" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111370" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCA</genome_strand>
        <mrna_strand>GCTTAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGGTAAGGTAGAACTTCAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTTATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCACAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCTCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297892" ref_strand="-" ref_description="SGN-E297892 [cLET-38-E24]">
      <seq>caaacttcctgacgcttggactcccaagctggcggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111678" stop="109485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111372" g_stop="111348" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="57" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="174" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="356" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109785" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="620" r_length="264" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E297892" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297892" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111372" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTC</genome_strand>
        <mrna_strand>CGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725253" ref_strand="+" ref_description="SGN-E725253 [FC26CB10]">
      <seq>aacaacaacaatggccgtgcctctgcttaacaggaaggtcgtgaagaagagagtgaaaaggttcattagacctcaaagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcaaaaatcgaacacaatgtttccactaggaataggaaagagattgtcgagcgatctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttaaatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccaaagtgaattttgacacatcctattgctatcaaatgcttaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111550" stop="109486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111250" g_stop="111151" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="282" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109786" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="545" r_length="263" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E725253" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111250" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTT</genome_strand>
        <mrna_strand>AACAACAACAATGGCCGTGCCTCTGCTTAACAGGAAGGTCGTGAAGAAGAGAGTGAAAAGGTTCATTAGACCTCAAAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAAAAATCGAACACAATGTTTCCACTAGGAATAGGAAAGAGATTGTCGAGCGATCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAAATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCAAAGTGAATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311185" ref_strand="+" ref_description="SGN-E311185 [cLEZ-16-P20]">
      <seq>gcggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111673" stop="109487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111373" g_stop="111348" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="143" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="325" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109787" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="587" r_length="262" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E311185" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111373" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTT</genome_strand>
        <mrna_strand>GCGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713631" ref_strand="+" ref_description="SGN-E713631 [FB09AG01]">
      <seq>gcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacnnnnaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111673" stop="109517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111373" g_stop="111348" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="143" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="325" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109815" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="559" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="575"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E713631" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111373" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACAC</genome_strand>
        <mrna_strand>GCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556392" ref_strand="+" ref_description="SGN-E556392 [cTSD-3-F2]">
      <seq>agacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111561" stop="109514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111261" g_stop="111151" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="293" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109815" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="527" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="549"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E556392" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111261" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACAC</genome_strand>
        <mrna_strand>AGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289388" ref_strand="+" ref_description="SGN-E289388 [cLET-3-G3]">
      <seq>agcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagtcaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgcttgaacctgttccttttggtttgtttaattaatactctgttttcccgaagtggattttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111666" stop="109517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111366" g_stop="111348" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="136" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="318" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109817" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="550" r_length="232" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E289388" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111366" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGAC</genome_strand>
        <mrna_strand>AGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGTCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGCTTGAACCTGTTCCTTTTGGTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E564371" ref_strand="+" ref_description="SGN-E564371 [2620]">
      <seq>gttcgcggcttagcagaaaccctagttccaaaggtaaggtaaggtagaacttcaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggtttattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaagtgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcacagcttgacgttgtcataacaaacaagcttgctaggttgcacagccagcgaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttctcgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111677" stop="109529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111377" g_stop="111348" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="147" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="330" r_length="183" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109823" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="557" r_length="227" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E564371" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111377" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAA-TGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAG-GAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGAT</genome_strand>
        <mrna_strand>GTTCGCGGCTTAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGGTAAGGTAGAACTTCAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTTATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAAGTGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCACAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGCGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCTCGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203016" ref_strand="+" ref_description="SGN-E203016 [cLEB-1-J4]">
      <seq>gcacgagtagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111582" stop="109533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="132" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="314" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109833" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="530" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E203016" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCC</genome_strand>
        <mrna_strand>AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304960" ref_strand="+" ref_description="SGN-E304960 [cLEX-10-P21]">
      <seq>gaattcgcacgagggcggtcacaaaaccctattcaaaggtagacaggtgaaccacaatggcggccttgttaacagaagcggaaaaagaggagaggtattaacctaaggaccgaagaatcactgtaagaaagctggcgcaacccaagggtttgatttaaggaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactacgaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacatccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagcgtttgaacctgttccttttgttatgtttaattaatactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111547" stop="109540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="127" r_length="92" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.82"/>
            <acceptor a_prob="0.572" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="303" r_length="176" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109840" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="512" r_length="209" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E304960" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCT</genome_strand>
        <mrna_strand>AAGGTA-GAC-AGGT-GAAC--C-ACAATGGC-G-GCCT-TG-TTAAC-AGAA-G-CG-GAA-AA-AGAG-G-AGAGG-T-ATTA-ACCT-A-AG-GACCGAAGAATCACTGT-AAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-AAAGCTGGCGCA-ACCCAAGGGT-TTGATT-TA-AG-GAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTACGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACATCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGCGTTTGAACCTGTTCCTTTTGTTATGTTTAATTAATACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719266" ref_strand="+" ref_description="SGN-E719266 [FC07BB08]">
      <seq>aggttcattacacctcagagtgaccgaaaaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacataacttactgtgcaaaattcgcacacaatgtttccactacgaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcccagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttaatgtttgaacctgttccttgggttttgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111492" stop="109551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111192" g_stop="111151" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.95"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="224" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="109851" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="422" r_length="198" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E719266" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111192" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTA</genome_strand>
        <mrna_strand>AGGTTCATTACACCTCAGAGTGACCGAAAAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAT........................................................................................................AACTTACTGTGCAAAATTCGCACACAATGTTTCCACTACGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCCCAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAATGTTTGAACCTGTTCCTTGGGTTTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299371" ref_strand="+" ref_description="SGN-E299371 [cLET-43-I17]">
      <seq>cggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcatagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctatagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcatacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacagcagaacttactgtgcataaatcgcacacaatgtttccactaagaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattggtttagcgtttgaacctgttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111672" stop="109563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111372" g_stop="111348" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="142" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.572" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="324" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109863" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="510" r_length="186" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E299371" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111372" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTT</genome_strand>
        <mrna_strand>CGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCATAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTATAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCATACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAGCAG........................................................................................................AACTTACTGTGCATAAATCGCACACAATGTTTCCACTAAGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGGTTTAGCGTTTGAACCTGTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202969" ref_strand="+" ref_description="SGN-E202969 [cLEB-1-O7]">
      <seq>gcacgagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111670" stop="109563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111370" g_stop="111348" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.826"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="141" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="323" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109863" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="509" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E202969" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111370" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTC-AGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTT</genome_strand>
        <mrna_strand>GCACGAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311529" ref_strand="+" ref_description="SGN-E311529 [cTOA-6-I5]">
      <seq>cggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatagcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactangaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattggtttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111672" stop="109581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111372" g_stop="111348" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="142" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="324" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109881" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="492" r_length="168" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E311529" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111372" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAG</genome_strand>
        <mrna_strand>CGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATAGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTANGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGGTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288096" ref_strand="+" ref_description="SGN-E288096 [cLES-7-G7]">
      <seq>gaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111578" stop="109588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111362" g_stop="111348" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="132" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="314" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109888" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="475" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E288096" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111362" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATT</genome_strand>
        <mrna_strand>GAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335738" ref_strand="+" ref_description="SGN-E335738 [cTOE-8-H21]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctatgttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111668" stop="109589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111368" g_stop="111348" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109889" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="480" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E335738" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111368" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATAT</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTATGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302772" ref_strand="+" ref_description="SGN-E302772 [cLEY-1-M9]">
      <seq>ggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111671" stop="109590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111371" g_stop="111348" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="141" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="323" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109890" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="482" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E302772" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111371" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATA</genome_strand>
        <mrna_strand>GGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265026" ref_strand="+" ref_description="SGN-E265026 [cLEI-2-K1]">
      <seq>agaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcttgaagaaaagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaataagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactatgaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111578" stop="109590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111363" g_stop="111348" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="133" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="315" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109890" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="474" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E265026" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111363" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATA</genome_strand>
        <mrna_strand>AGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCTTGAAGAAAAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAATAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTATGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E583888" ref_strand="+" ref_description="SGN-E583888 [9709]">
      <seq>ccgtattccaaaggtaaggtagggtacaacttcaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggtttattacacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaggaagaactcgccactatcttcccaagtggcttcaagaagtttgttgtgtcataatgcaagtgagcttgagatcctaatgatgcacaacagaacttactgtgcaggaaattgcacatagtgtttccaccaggaagaggaaagagatcgtcgagcgagtctgcccagcttgacgtagtcataacaaacaatgcttgactaggttgcaacagccaggaggatgaatgagcattttggcttaagatgagatctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111577" stop="109591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111338" g_stop="111329" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111328" i_stop="111268" i_length="61">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="127" r_length="117" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="312" r_length="185" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.993" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109891" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="475" r_length="163" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E583888" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111338" e_stop="111329"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAG-ACTCGCCACTATCTTCCCAA-TGGCTTCAAGAAGTTCGTCGTG-CATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCA-GAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAG-CTGCCCAACTTGATGTTGTCATAACAAACAA-GCTTG-CTAGGTTGC-ACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTAT</genome_strand>
        <mrna_strand>CCGTATTCCA.............................................................AAGGTAAGGTAGGGTACAACTTCAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTTATTACACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAGGAAGAACTCGCCACTATCTTCCCAAGTGGCTTCAAGAAGTTTGTTGTGTCATAATGCAAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGGAAATTGCACATAGTGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGTCTGCCCAGCTTGACGTAGTCATAACAAACAATGCTTGACTAGGTTGCAACAGCCAGGAGGATGAATGAGCATTTTGGCTTAAGATGAGATCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281287" ref_strand="-" ref_description="SGN-E281287 [cLEL-1-K18](-)">
      <seq>gcacgagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacggtggccgtgcctctgcttaacaagaccgtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaagaagaggaaagagattgtcgagcgagctgcccaacttgatgatggcataacaaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111670" stop="109652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111370" g_stop="111348" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.826"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="141" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="323" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109952" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="420" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E281287" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281287" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111370" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTC-AGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAG</genome_strand>
        <mrna_strand>GCACGAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACGGTGGCCGTGCCTCTGCTTAACAAGACCGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAAGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGATGGCATAACAAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293613" ref_strand="+" ref_description="SGN-E293613 [cLET-15-H2]">
      <seq>cagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaacgaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaaggtcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactatgaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111578" stop="109656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111364" g_stop="111348" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="134" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="316" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109956" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="409" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E293613" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111364" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAA</genome_strand>
        <mrna_strand>CAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGGTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTATGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306100" ref_strand="+" ref_description="SGN-E306100 [cLEY-13-L11]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgatgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtctagcgagctgcccaacttgatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111668" stop="109666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111368" g_stop="111348" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="109966" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="403" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E306100" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111368" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="109966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTG</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGATGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCTAGCGAGCTGCCCAACTTGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341212" ref_strand="+" ref_description="SGN-E341212 [cTOE-22-M17]">
      <seq>aaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111578" stop="109725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111361" g_stop="111348" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="131" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="313" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110048" g_stop="110025" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="337" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E341212" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111361" e_stop="111348"/>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="110025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACA</genome_strand>
        <mrna_strand>AAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336666" ref_strand="+" ref_description="SGN-E336666 [cTOE-4-F18]">
      <seq>taagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111563" stop="109853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111263" g_stop="111151" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110153" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="295" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110048" g_stop="110036" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="308" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E336666" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111263" e_stop="111151"/>
          <exon e_start="110334" e_stop="110153"/>
          <exon e_start="110048" e_stop="110036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCA</genome_strand>
        <mrna_strand>TAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281332" ref_strand="-" ref_description="SGN-E281332 [cLEL-1-B20](-)">
      <seq>gcacgagtagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgacgaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="111582" stop="109940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111267" g_stop="111151" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="132" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110334" g_stop="110240" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="227" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E281332" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281332" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111267" e_stop="111151"/>
          <exon e_start="110334" e_stop="110240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAA</genome_strand>
        <mrna_strand>AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGACGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725306" ref_strand="+" ref_description="SGN-E725306 [FC26CH03]">
      <seq>gctcgttagggtttcggagaacacctctcgccggtagacgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaaattaggacagataaaacataccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaaggggtaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatcataggttgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115861" stop="118612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116160" g_stop="116240" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="158" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="339" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="437" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118312" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="889" r_length="452" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E725306" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116160" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGTTAGGGTTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACT</genome_strand>
        <mrna_strand>GCTCGTTAGGGTTTCGGAGA-ACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGTAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718927" ref_strand="+" ref_description="SGN-E718927 [FC06BA05]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatatctcgttagggtttaggagacacacctctcgccggtagacgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaaattaggacagataaaacataccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115859" stop="118548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116169" g_stop="116240" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="126" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="204" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="385" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="483" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118248" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="871" r_length="388" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E718927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116169" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTG</genome_strand>
        <mrna_strand>GGTTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718844" ref_strand="+" ref_description="SGN-E718844 [FC06AA06]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatatctcgttagggtttaggagacacacctctcgccggtagacgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaaattaggacagataaaacataccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115859" stop="118547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116169" g_stop="116240" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="126" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="204" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="385" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="483" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118247" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="870" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E718844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116169" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATT</genome_strand>
        <mrna_strand>GGTTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556188" ref_strand="+" ref_description="SGN-E556188 [cTSD-2-K8]">
      <seq>attaggagacacacctctcgccggtagccgtcactcgcctcatttaatcagtcggaaaaccgccaaaatggctagagggttgaataaacatttgaagaggctcattgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaatccttcttctggtcctcataattcaagggaatgtttgccactggttattatcctcaggaaccggtgtgaaatatgcattgacataccgcgaggtcatttctatcttgatgcatcgccaagtgatggttgatgggaaaattaggacagatgagacgtaccctgctggtttcatggacgttgttacgattccaaagacaactgagagtttcagacttctttatgacgctaagggtcgattccctctccactcactctgagatgatgaagccaagttcaaactttgcaaggttcgatcagcgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115872" stop="118582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116171" g_stop="116240" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="148" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="330" r_length="182" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.600" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="428" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118282" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="850" r_length="422" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E556188" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116171" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGT-TGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGC</genome_strand>
        <mrna_strand>ATTAGGAGACACACCTCTCGCCGGTAGCCGTCACTCGCCTCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGAGGGTTGAATAAACATTTGAAGAGGCTCATTGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAATCCTTCTTCTGGTCCTCATAATTCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTGTGAAATATGCATTGACATACCGCGAGGTCATTTCTATCTTGATGCATCGCCAAGTGATGGTTGATGGGAAAATTAGGACAGATGAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAACTGAGAGTTTCAGACTTCTTTATGACGCTAAGGGTCGATTCCCTCTCCACTCACTCTGAGATGATGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGCGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556280" ref_strand="+" ref_description="SGN-E556280 [cTSD-2-P24]">
      <seq>tttaggagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccctgggtgtctctacctaaagggtaaggtatcaagttatctatcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115871" stop="118549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116171" g_stop="116240" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="148" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="329" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="427" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118249" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="816" r_length="389" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E556280" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116171" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGA</genome_strand>
        <mrna_strand>TTTAGGAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCCTGGGTGTCTCTACCTAAAGGGTAAGGTATCAAGTTATCTATCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214317" ref_strand="+" ref_description="SGN-E214317 [cLEC-77-N4]">
      <seq>ttaggagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaagccaatgacaccatcaagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115872" stop="118287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116172" g_stop="116240" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="147" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="328" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="426" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117987" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="552" r_length="126" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E214317" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116172" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGG</genome_strand>
        <mrna_strand>TTAGGAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAA-GCCAATGACACCATCAAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336824" ref_strand="+" ref_description="SGN-E336824 [cTOE-5-B2]">
      <seq>ttaggagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115872" stop="117640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116172" g_stop="116240" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="147" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117340" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="317" r_length="170" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E336824" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116172" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGC</genome_strand>
        <mrna_strand>TTAGGAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701005" ref_strand="+" ref_description="SGN-E701005 [FA14DA12]">
      <seq>aagagacacacctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtnaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctattattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcatanggtgaaactgaagattatttaatagatttggtcattttctctttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115874" stop="118653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116174" g_stop="116240" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="145" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="326" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="424" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118353" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="916" r_length="492" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E701005" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116174" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTT</genome_strand>
        <mrna_strand>AAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTNAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATANGGTGAAACTGAAGATTATTTAATAGATTTGGTCAT-TTTCTCTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699419" ref_strand="+" ref_description="SGN-E699419 [FA10AA02]">
      <seq>cccattacacctctcgccggtagacgtcactcgccgcatttcctctatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaaattaggacagataaaacataccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggataaaacaggggacctgttggaatccttaagaatccacacaaccaccagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115881" stop="118409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116175" g_stop="116240" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="144" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="325" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="423" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118109" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="672" r_length="249" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E699419" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116175" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGT</genome_strand>
        <mrna_strand>CCCATTACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTCCTCTATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGATAAAACAGGGGACCTGTTGGAATCCTTAAGAATCCACACAACCACCAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311549" ref_strand="+" ref_description="SGN-E311549 [cTOA-6-O7]">
      <seq>ggagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115875" stop="118036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116175" g_stop="116240" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="144" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="325" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="423" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117873" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="436" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E311549" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116175" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCA</genome_strand>
        <mrna_strand>GGAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701836" ref_strand="+" ref_description="SGN-E701836 [FA17AC11]">
      <seq>gagacacacctctcgccggtagacgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaaattaggacagataaaacataccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctncatcagctacaactgcttaaaaatcatangttgaacttgagatgaatttaaataggtcggtaatatttctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115876" stop="118648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116176" g_stop="116240" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="324" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="422" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118348" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="910" r_length="488" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E701836" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116176" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTT</genome_strand>
        <mrna_strand>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTNCATCAGCTACAACTGCTTAAAAATCATANGTTGAACTTGAGATGAATTTAAATAGGTCGGTAATATTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719684" ref_strand="+" ref_description="SGN-E719684 [FC08CC12]">
      <seq>agggcgattggcggccaatcggccgaattgaagacacacacctccccctgaaagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataaaacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115871" stop="122473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116176" g_stop="116240" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="97" r_length="65" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="175" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="356" r_length="181" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="454" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118247" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="841" r_length="387" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E719684" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116176" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATT</genome_strand>
        <mrna_strand>GACACACACCTCCCCCTGAAAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAAACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724393" ref_strand="+" ref_description="SGN-E724393 [FC23DH10]">
      <seq>gggcgattggcggccaatcggccgaattatctcattagggtctcaatacacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115856" stop="122472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116176" g_stop="116240" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="111" r_length="65" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="189" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="370" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="468" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118246" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="854" r_length="386" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E724393" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116176" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCAT</genome_strand>
        <mrna_strand>TACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314204" ref_strand="+" ref_description="SGN-E314204 [cTOA-21-C23]">
      <seq>gagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115876" stop="118460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116176" g_stop="116240" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="324" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="422" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118160" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="722" r_length="300" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E314204" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116176" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</genome_strand>
        <mrna_strand>GAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321089" ref_strand="+" ref_description="SGN-E321089 [cTOB-13-K1]">
      <seq>gagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115876" stop="118291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116176" g_stop="116240" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="324" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="422" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117991" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="553" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E321089" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116176" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTT</genome_strand>
        <mrna_strand>GAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270950" ref_strand="+" ref_description="SGN-E270950 [cLEM-22-A1]">
      <seq>gagacacacctctcgccggtagccgtcactcgccgcatttaatcaggcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaaaggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115876" stop="118262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116176" g_stop="116240" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="324" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="422" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117962" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="524" r_length="102" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E270950" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116176" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATC</genome_strand>
        <mrna_strand>GAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGGCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAAGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322402" ref_strand="+" ref_description="SGN-E322402 [cTOB-24-J2]">
      <seq>gagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgtaagtgacatgtctttcctaagtctttttttttatagtactacttagtttcctgcttcttgacttgactgttctctttggtctctacttcaggctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctgggttcatgggtaagaacacctcccattggattgttttttcattttcaaaccttttagatatagtttccctatatctgtactgtctagggttttgttcatttccagacgaaagtaataatactgatttcatctatatacacgtatttcccccattccaaagacnatagntgatctgtgtacaaaaaattcatgaaaatcatttgagagtctctttaattcttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115876" stop="117867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116176" g_stop="116240" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117567" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="634" r_length="569" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E322402" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116176" e_stop="116240"/>
          <exon e_start="116999" e_stop="117567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCT-CCATTGGATTGTTTTTTCA-TTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTA-GGTATTGTTCA-TTCCAGACGAAAGTAATAATACTGA-TTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTC</genome_strand>
        <mrna_strand>GAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTT-CCTAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGGTTCATGGGTAAGAACACCTCCCATTGGATTGTTTTTTCATTTTCAAACCTTTTAGA-TATAGTTTCCCTATATCTGTACTGTCTAGGGTTTTGTTCATTTCCAGACGAAAGTAATAATACTGATTTCATCTATATACACGTATTTCCCCCATTCCAAAGACNATAGNTGATCTGTGTACAAAAAA-TTCATGAAAA-TCAT-TTGAGAGTCTCTTTAATTCTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325893" ref_strand="+" ref_description="SGN-E325893 [cTOC-12-G21]">
      <seq>agacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115877" stop="118340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116177" g_stop="116240" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="323" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="421" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118040" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="601" r_length="180" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E325893" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116177" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTG</genome_strand>
        <mrna_strand>AGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336662" ref_strand="+" ref_description="SGN-E336662 [cTOE-4-F10]">
      <seq>acacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115877" stop="118338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116177" g_stop="116240" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="323" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="421" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118038" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="599" r_length="178" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E336662" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116177" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATG</genome_strand>
        <mrna_strand>ACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303820" ref_strand="+" ref_description="SGN-E303820 [cLEX-4-F12]">
      <seq>agacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgtgtgtacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115877" stop="118230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116177" g_stop="116240" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="323" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="421" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117930" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="491" r_length="70" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E303820" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116177" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATG</genome_strand>
        <mrna_strand>AGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTGTGTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319399" ref_strand="+" ref_description="SGN-E319399 [cTOB-15-M20]">
      <seq>agacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115877" stop="118036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116177" g_stop="116240" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="323" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="421" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117873" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="434" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E319399" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116177" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCA</genome_strand>
        <mrna_strand>AGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275846" ref_strand="+" ref_description="SGN-E275846 [cLEN-18-D16]">
      <seq>gacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataatattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115878" stop="118360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116178" g_stop="116240" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="141" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="322" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="420" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118060" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="620" r_length="200" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E275846" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116178" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAG</genome_strand>
        <mrna_strand>GACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAATATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325867" ref_strand="+" ref_description="SGN-E325867 [cTOC-12-L16]">
      <seq>acacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115879" stop="118337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116179" g_stop="116240" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="419" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118037" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="596" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E325867" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116179" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAAT</genome_strand>
        <mrna_strand>ACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307304" ref_strand="+" ref_description="SGN-E307304 [cLEY-12-F23]">
      <seq>acacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115879" stop="118261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116179" g_stop="116240" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="419" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117961" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="520" r_length="101" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E307304" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116179" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCAT</genome_strand>
        <mrna_strand>ACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341631" ref_strand="+" ref_description="SGN-E341631 [cTOE-23-M10]">
      <seq>acacacctctcgtcggtagccgtcactcgccgcatgtaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115879" stop="118008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116179" g_stop="116240" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117708" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="401" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E341631" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116179" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTC</genome_strand>
        <mrna_strand>ACACACCTCTCGTCGGTAGCCGTCACTCGCCGCATGTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319525" ref_strand="+" ref_description="SGN-E319525 [cTOB-15-C18]">
      <seq>cacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115880" stop="118036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116180" g_stop="116240" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="139" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="320" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="418" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117873" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="431" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E319525" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116180" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCA</genome_strand>
        <mrna_strand>CACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322641" ref_strand="+" ref_description="SGN-E322641 [cTOB-26-A14]">
      <seq>acgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataaagatgttgacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115881" stop="118317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116181" g_stop="116240" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118017" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="574" r_length="157" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E322641" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116181" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCA</genome_strand>
        <mrna_strand>ACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAAGATGTTGACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337733" ref_strand="+" ref_description="SGN-E337733 [cTOE-17-L24]">
      <seq>acacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115881" stop="118289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116181" g_stop="116240" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117989" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="546" r_length="129" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E337733" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116181" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGAC</genome_strand>
        <mrna_strand>ACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279640" ref_strand="+" ref_description="SGN-E279640 [cLER-5-O19]">
      <seq>acgcctctcgccggtagacgtcactctcggctgctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggctgaaatatgcgttgacctaccgtgaggtcatttctatctcgatgcaacgccaagttatggttgatgggaaagttataacacataacacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgcctacactcacttatagatgaggaagccaagttcaaactttgcaaggtacgatcactgcagtttgaacagaagggtatcccatatctcaacacgtatgatggaagaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115881" stop="118239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116181" g_stop="116240" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="0.908"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117939" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="496" r_length="79" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E279640" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116181" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAA</genome_strand>
        <mrna_strand>ACGCCTCTCGCCGGTAGACGTCACTCTCGGCTGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGCTGAAATATGCGTTGACCTACCGTGAGGTCATTTCTATCTCGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTATAACACATAACACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTACACTCACTTATAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTACGATCACTGCAGTTTGAACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323017" ref_strand="+" ref_description="SGN-E323017 [cTOB-30-H10]">
      <seq>acctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatcctttagaatagagagaagcacnagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115883" stop="118460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116183" g_stop="116240" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118160" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="715" r_length="300" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E323017" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116183" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</genome_strand>
        <mrna_strand>ACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTTAGAATAGAGAGAAGCACNAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209872" ref_strand="+" ref_description="SGN-E209872 [cLEC-52-I12]">
      <seq>gcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatcttaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcattaagtttgatgttggtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115884" stop="118337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116183" g_stop="116240" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118037" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="592" r_length="177" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E209872" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116183" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAAT</genome_strand>
        <mrna_strand>GCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTTAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATTAAGTTTGATGTTGGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366270" ref_strand="+" ref_description="SGN-E366270 [cLPT-1-B16]">
      <seq>acctctcgccggctgccgtcactcgcggcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaataggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115883" stop="122253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116183" g_stop="116240" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118027" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="582" r_length="167" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E366270" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116183" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGA</genome_strand>
        <mrna_strand>ACCTCTCGCCGGCTGCCGTCACTCGCGGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAATAGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247051" ref_strand="+" ref_description="SGN-E247051 [cLEF-41-H3]">
      <seq>acctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115883" stop="118036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116183" g_stop="116240" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117873" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="428" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E247051" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116183" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCA</genome_strand>
        <mrna_strand>ACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317253" ref_strand="+" ref_description="SGN-E317253 [cTOA-28-F17]">
      <seq>cctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115884" stop="118337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116184" g_stop="116240" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="135" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="316" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="414" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118037" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="591" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E317253" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116184" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAAT</genome_strand>
        <mrna_strand>CCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285583" ref_strand="+" ref_description="SGN-E285583 [cLES-5-M13]">
      <seq>tctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115886" stop="118201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116186" g_stop="116240" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117901" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="453" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E285583" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116186" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAA</genome_strand>
        <mrna_strand>TCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553879" ref_strand="+" ref_description="SGN-E553879 [cTSC-2-I16]">
      <seq>cgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattctaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttaaaggggtgccactcttatttttggggttgcaattcaacatcctatggactcggaatggttttacatacctttttttgtcagaaaaaacaatgactgaattaaaacaatcagtggcctttttagggaaggaattccatggaaaaatttaaggactaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115889" stop="118731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116189" g_stop="116240" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="130" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="311" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="409" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118427" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="978" r_length="569" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E553879" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>976</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116189" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTT-GTGTTGCATTTTGACAT-CTGTGTACTCGGTACTGCTTTACATACCTTTTTT</genome_strand>
        <mrna_strand>CGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCTAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAAAGGGGTGCCACTCTTATTTTTGGGGTTGCAATTCAACATCCTATGGACTCGGAATGGTTTTACATACCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553834" ref_strand="+" ref_description="SGN-E553834 [cTSC-2-G10]">
      <seq>tggatcccccgggctgcaggcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattctaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaaaggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaattttataggttgcgctatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115889" stop="118643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116189" g_stop="116240" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="72" r_length="52" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="150" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="331" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="429" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118343" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="913" r_length="484" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E553834" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116189" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTT-CGGTAATATTT</genome_strand>
        <mrna_strand>CGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCTAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAAGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTTATAGGTTGCGCTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297932" ref_strand="+" ref_description="SGN-E297932 [cLET-38-D7]">
      <seq>gccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttataacagataatacttaccctgctggtttcatggatgttgtgactattccaaagacaaatgatagcttgcgacttctttatgacactaatggtcggttccgcctccactcactcacagacgaggaagccaagttcaaactttgcaaggttctatcagtacagtttggacagaacggtatcccatatatcaacacatatgatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115890" stop="118234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116190" g_stop="116240" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.600" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.878"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117934" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="482" r_length="74" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E297932" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116190" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAG</genome_strand>
        <mrna_strand>GCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTATAACAGATAATACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ATGTTGTGACTATTCCAAAGACAAATGATAGCTTGCGACTTCTTTATGACACTAATGGTCGGTTCCGCCTCCACTCACTCACAGACGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCTATCAGTACAGTTTGGACAGAACGGTATCCCATATATCAACACATATGATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439736" ref_strand="+" ref_description="SGN-E439736 [cSTA-13-I16]">
      <seq>cgaggctcgccggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaaccatttgaagaggctcaatgccgctctaagcattggatgccttgataaacttggaggtgcttttgctcccaagccttcatctggtccacacaaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttacgattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115904" stop="118338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116199" g_stop="116240" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.79"/>
            <acceptor a_prob="0.994" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="125" r_length="82" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.87"/>
            <acceptor a_prob="0.990" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="306" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="404" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118038" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="582" r_length="178" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E439736" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116199" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCACTCGCCG-CATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAA-CATTTGAAGAGGCTCAATG-CGC-CTAAGCATTGGATG-CTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATG</genome_strand>
        <mrna_strand>CGAGGCTCGCCGGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACCATTTGAAGAGGCTCAATGCCGCTCTAAGCATTGGATGCCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCATCTGGTCCACACAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452142" ref_strand="+" ref_description="SGN-E452142 [cSTS-15-F6]">
      <seq>ctcgccggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctgnggcatgagtttgctacccgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115904" stop="118465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116204" g_stop="116240" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.838"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="116" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="297" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="395" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118165" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="700" r_length="305" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E452142" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116204" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCC-GCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCT</genome_strand>
        <mrna_strand>CTCGCCGGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGNGGCATGAGTTTGCTACCCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406380" ref_strand="+" ref_description="SGN-E406380 [PPI-3-J17]">
      <seq>cgccggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactgggtggtagaaacaggggggcgtgtttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115906" stop="118459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116206" g_stop="116240" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.829"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="114" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="295" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="393" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118160" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="696" r_length="303" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E406380" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116206" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCC-GCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACT-GGTGGTAGAAACA-GGGGACGTG-TTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</genome_strand>
        <mrna_strand>CGCCGGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGGTGGTAGAAACAGGGGGGCGTGTTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468652" ref_strand="+" ref_description="SGN-E468652 [cSTB-5-O24]">
      <seq>cgccggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagctttcgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115906" stop="118337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116206" g_stop="116240" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.829"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="114" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="295" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="393" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118037" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="570" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E468652" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116206" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCC-GCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAAT</genome_strand>
        <mrna_strand>CGCCGGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTTCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452141" ref_strand="+" ref_description="SGN-E452141 [cSTS-15-F4]">
      <seq>ggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacttaccctgctggtttcatggatgttgttacgattccaaagacgaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactgggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctgnggcatgagtttgctacccgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115910" stop="118465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116209" g_stop="116240" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118165" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="695" r_length="306" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E452141" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116209" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACT-GGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCT</genome_strand>
        <mrna_strand>GGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCAAAGACGAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGNGGCATGAGTTTGCTACCCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441459" ref_strand="+" ref_description="SGN-E441459 [cSTA-30-O14]">
      <seq>ggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115910" stop="118360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116209" g_stop="116240" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118060" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="589" r_length="200" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E441459" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116209" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAG</genome_strand>
        <mrna_strand>GGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E399690" ref_strand="+" ref_description="SGN-E399690 [cSTC-2-I5]">
      <seq>ggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115910" stop="118328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116209" g_stop="116240" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118028" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="557" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E399690" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E399690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116209" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGAT</genome_strand>
        <mrna_strand>GGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476866" ref_strand="+" ref_description="SGN-E476866 [cSTB-46-M13]">
      <seq>ggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacttaccctgctggtttcatggatgttgttacgattccaaagacgaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115910" stop="118289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116209" g_stop="116240" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117989" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="518" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E476866" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116209" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGAC</genome_strand>
        <mrna_strand>GGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCAAAGACGAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476092" ref_strand="+" ref_description="SGN-E476092 [cSTB-43-E16]">
      <seq>ggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcaagtttgacagaaaggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115910" stop="118260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116209" g_stop="116240" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117960" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="489" r_length="100" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E476092" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116209" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCA</genome_strand>
        <mrna_strand>GGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAAGTTTGACAGAAAGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449920" ref_strand="+" ref_description="SGN-E449920 [cSTS-7-L8]">
      <seq>cagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccgtgggtgtctctacctaagggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115911" stop="118525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116211" g_stop="116240" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="108" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="289" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="387" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118225" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="752" r_length="365" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E449920" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116211" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAA</genome_strand>
        <mrna_strand>CAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAGGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412716" ref_strand="+" ref_description="SGN-E412716 [STM-16-P13]">
      <seq>cagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115911" stop="118410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116211" g_stop="116240" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="108" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="289" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="387" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118110" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="637" r_length="250" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E412716" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116211" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTA</genome_strand>
        <mrna_strand>CAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471139" ref_strand="+" ref_description="SGN-E471139 [cSTB-22-J15]">
      <seq>cagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115911" stop="118257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116211" g_stop="116240" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="108" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="289" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="387" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="117957" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="484" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E471139" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116211" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCC</genome_strand>
        <mrna_strand>CAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459564" ref_strand="+" ref_description="SGN-E459564 [cPRO-28-A24]">
      <seq>agctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacttaccctgctggtttcatggatgttgttacgattccaaagacgaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115915" stop="118353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116212" g_stop="116240" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="107" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="288" r_length="181" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="386" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118053" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="579" r_length="193" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E459564" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116212" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTG</genome_strand>
        <mrna_strand>AGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCAAAGACGAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460356" ref_strand="+" ref_description="SGN-E460356 [cPRO-30-F4]">
      <seq>gctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115915" stop="118381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116213" g_stop="116240" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="106" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="287" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="385" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118084" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="609" r_length="224" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E460356" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116213" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCT</genome_strand>
        <mrna_strand>GCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275587" ref_strand="+" ref_description="SGN-E275587 [cLEN-10-P1]">
      <seq>tttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115913" stop="118376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116213" g_stop="116240" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="106" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="287" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="385" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117861" g_stop="118076" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="601" r_length="216" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E275587" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116213" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTT</genome_strand>
        <mrna_strand>TTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275582" ref_strand="+" ref_description="SGN-E275582 [cLEN-10-N1]">
      <seq>tttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagaccaatgagagtttcagacttctttatgacactaagggtcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115913" stop="117991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116213" g_stop="116240" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="106" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="287" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117691" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="350" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E275582" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116213" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGAT</genome_strand>
        <mrna_strand>TTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACCAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475760" ref_strand="+" ref_description="SGN-E475760 [cSTB-41-N17]">
      <seq>gctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcatgaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagctttcgacttctttatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115915" stop="117980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116213" g_stop="116240" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="106" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="287" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117629" g_stop="117680" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="339" r_length="52" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E475760" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116213" e_stop="116240"/>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACAC</genome_strand>
        <mrna_strand>GCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCATGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTTCGACTTCTTTATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726983" ref_strand="+" ref_description="SGN-E726983 [LA13BE09]">
      <seq>atccctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctattattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="118612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="414" r_length="97" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118312" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="866" r_length="452" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E726983" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACT</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................A-TTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589138" ref_strand="+" ref_description="SGN-E589138 [42706]">
      <seq>gccggcagctattcaatcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgttttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaacggtatctaaggttcatctatcattgaagaggctcgcaagaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="118567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="113" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="294" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="392" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118267" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="805" r_length="413" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E589138" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCG-TCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAA-GGTATC-AA-GTT-ATCTATCATTGAAGAGGCTCGCAAG-AGGAT</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAACGGTATCTAAGGTTCATCTATCATTGAAGAGGCTCGCAAGAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574428" ref_strand="+" ref_description="SGN-E574428 [33894]">
      <seq>ccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggtagcctttgagacagttcacattcagcgattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccgtgggtgtctctacctaaanggtaaaggtatcaacgttatctatcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="118549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="89" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="270" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="368" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118249" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="761" r_length="393" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E574428" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAG-CTTTGAGACAGTTCACATTCAG-GACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCT-AAGGGTAAAGGTATCAA-GTTATCTATCATTGA</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCCTTTGAGACAGTTCACATTCAGCGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAANGGTAAAGGTATCAACGTTATCTATCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561103" ref_strand="+" ref_description="SGN-E561103 [20862]">
      <seq>gctattcaatcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaaggcatgggtgtctctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="118516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="106" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="287" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="385" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118216" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="741" r_length="356" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E561103" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACC</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGGCATGGGTGTCTCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447868" ref_strand="+" ref_description="SGN-E447868 [cSTS-4-C15]">
      <seq>cgaggttcaatcggaaaacccgccaaaatggcaagagggttgaagaaacactttgaagaggctcaatgcgcctaagcattggatgccttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="118499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="110" r_length="80" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118199" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="728" r_length="339" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E447868" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAACA-TTTGAAGAGGCTCAATGCGCCTAAGCATTGGATG-CTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAG</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACACTTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557864" ref_strand="+" ref_description="SGN-E557864 [16730]">
      <seq>gaaaccgcaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacaggggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116690" stop="118483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="92" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="273" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="371" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118183" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="695" r_length="324" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E557864" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACA-GGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCT</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468857" ref_strand="+" ref_description="SGN-E468857 [cSTB-6-O6]">
      <seq>cggaaagacgcgccaaaatggcaagagggttgaagaaacattcgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="118400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="98" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="279" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="377" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118100" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="617" r_length="240" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E468857" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAG</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACATTCGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486622" ref_strand="+" ref_description="SGN-E486622 [cSTE-22-B4]">
      <seq>cagctattcaatcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatgctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacaggnngcgtgttggaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="118367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="108" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="289" r_length="181" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.600" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="387" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118083" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="610" r_length="223" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E486622" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCC</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATGCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGNNGCGTGTTGGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E563020" ref_strand="+" ref_description="SGN-E563020 [1351]">
      <seq>cgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttggataaacttggaggtgcttttgctcccaagccttcttctggntccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctggatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgttgttggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="118381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="97" r_length="79" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="279" r_length="182" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="377" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118082" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="601" r_length="224" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E563020" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTT-GATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGG-TCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCT-GATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACG-TGTTGGAATC</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGNTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTTGTTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441818" ref_strand="+" ref_description="SGN-E441818 [cSTA-31-I24]">
      <seq>gagactagttctcttctctctctctccgccggcagctattcaatcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactgggtgtagaaacagggggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="118372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="419" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118072" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="631" r_length="212" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E441818" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACG</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGGTGTAGAAACAGGGGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437848" ref_strand="+" ref_description="SGN-E437848 [cSTA-5-A24]">
      <seq>cgaggagagggttgaagaaaccatttgaagaggctcaatgcgcctaagcattggatgccttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116702" stop="118339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="82" r_length="79" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="263" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="361" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118039" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="540" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E437848" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAA-CATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATG-CTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGT</genome_strand>
        <mrna_strand>GG-AGAGGGTTGAAGAAACCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474590" ref_strand="+" ref_description="SGN-E474590 [cSTB-37-E13]">
      <seq>cgagagctctcgccggcagctattcaatcggaaaacccgccaaaatggcaagagggttgaagaaaccatttgaagaggctcaatgcgccctaagcattggatgccttgataaaccttggaggtgccttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgaccagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="118295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="130" r_length="83" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.83"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="311" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="409" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="117995" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="544" r_length="135" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E474590" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAA-CATTTGAAGAGGCTCAATGCG-CCTAAGCATTGGATG-CTTGATAAAC-TTGGAGGTG-CTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGAT</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACCATTTGAAGAGGCTCAATGCGCCCTAAGCATTGGATGCCTTGATAAACCTTGGAGGTGCCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACCAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441527" ref_strand="+" ref_description="SGN-E441527 [cSTA-30-D12]">
      <seq>ttcaatcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaagccaatgacaccatcaagctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="118289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116999" g_stop="117076" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="102" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="283" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="381" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="117989" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="510" r_length="129" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E441527" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116999" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGAC</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAAGCCAATGACACCATCAAGCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303033" ref_strand="+" ref_description="SGN-E303033 [cLEW-26-M4]">
      <seq>agaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaaaggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116712" stop="118254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117012" g_stop="117076" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="246" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="344" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="117954" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="438" r_length="94" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E303033" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117012" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATC</genome_strand>
        <mrna_strand>AGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAAGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730435" ref_strand="+" ref_description="SGN-E730435 [LA24AE06]">
      <seq>actttaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaaattaggacagataaaacataccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatcataggttgaacttgagatgaatttaataggttcgggtaatatttctctttgtttagagggatgccattcttatttttgtgttgcattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116719" stop="118689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117018" g_stop="117076" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="240" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="338" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118389" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="868" r_length="530" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E730435" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117018" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTC-GGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTG</genome_strand>
        <mrna_strand>ACTTTAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735390" ref_strand="+" ref_description="SGN-E735390 [LC01BE09]">
      <seq>cgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttaaaggggtgccacctcttatttttggtgttgcatttcaacatcttatgtactcggaattgttttacataccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116736" stop="118665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117036" g_stop="117076" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="222" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="320" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118426" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="889" r_length="569" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E735390" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117036" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCA-TTCTTATTTTT-GTGTTGCATTTTGACATC-TGTGTACTCGGTACTGCTTTACATACCTTTTT</genome_strand>
        <mrna_strand>CGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAAAGGGGTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCTTATGTACTCGGAATTGTTTTACATACCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735851" ref_strand="+" ref_description="SGN-E735851 [LC03BE09]">
      <seq>ctcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcaactacaactgcttaaaaatgataggttgaacttgaaatgaatttaatacgttgcgctatttttctctttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116736" stop="118653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117036" g_stop="117076" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="222" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="320" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118353" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="813" r_length="493" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E735851" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117036" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTT</genome_strand>
        <mrna_strand>CTCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAACTACAACTGCTTAAAAATGATAGGTTGAACTTGAAATGAATTTAATACGTTGCGCTATTTTTCTCTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735391" ref_strand="+" ref_description="SGN-E735391 [LC01BE10]">
      <seq>cgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaanggtaaaggtatcaagttatctatcattgaagaggctcgcaagaagatggctgctcaatcagctacaactgcttaaaatgataggttgaacttgagatgaatttaataggttgccctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116736" stop="118642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117036" g_stop="117076" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="222" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="320" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118329" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="788" r_length="468" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E735391" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117036" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAG</genome_strand>
        <mrna_strand>CGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAANGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAAGATGGCTGCTCAATCAGCTACAACTGCTT-AAAATGATAGGTTGAACTTGAGATGAATTTAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569916" ref_strand="+" ref_description="SGN-E569916 [14418]">
      <seq>cctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggcaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaggggtcggttccgtctccactcactcagagatgaggaggccaagttcaaacttttgtaaaggttcgatcagctgccggtttggacagaagggaatccatatcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116738" stop="118218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117038" g_stop="117076" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="221" r_length="182" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="319" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="117919" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="381" r_length="62" r_score="0.780"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E569916" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117038" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGG-AACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAAC-TTTG-CAAGGTTCGATCAG-TG-CAGTTTGGACAGAAGGGAATCCCATATCTCAA</genome_strand>
        <mrna_strand>CCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGCAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAGGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG......................................................................................................................................TTCAAACTTTTGTAAAGGTTCGATCAGCTGCCGGTTTGGACAGAAGGGAAT-CCATATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286384" ref_strand="+" ref_description="SGN-E286384 [cLES-11-L5]">
      <seq>tggatgcttgttaaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttgggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116747" stop="118416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117047" g_stop="117076" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="211" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="309" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118116" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="566" r_length="257" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E286384" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117047" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTT-GGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTG</genome_strand>
        <mrna_strand>TGGATGCTTGTTAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E565631" ref_strand="+" ref_description="SGN-E565631 [4070]">
      <seq>taaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttttttcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116758" stop="121954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117058" g_stop="117076" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="200" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117683" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="255" r_length="55" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E565631" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117058" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAA</genome_strand>
        <mrna_strand>TAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTTTTTCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406476" ref_strand="+" ref_description="SGN-E406476 [PPI-3-N12]">
      <seq>tggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacatacccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttacctggtggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116871" stop="118359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117064" g_stop="117076" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="195" r_length="182" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="293" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118059" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="493" r_length="200" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E406476" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117064" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATA-CCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGA-CTGGTGGTA</genome_strand>
        <mrna_strand>TGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACCTGGTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253215" ref_strand="+" ref_description="SGN-E253215 [cLEG-26-D8]">
      <seq>tttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactgggtattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctagatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggaggtagaaacaggggacatgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116871" stop="118460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117074" g_stop="117076" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117171" g_stop="117351" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="184" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="282" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117861" g_stop="118160" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="583" r_length="301" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E253215" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117074" e_stop="117076"/>
          <exon e_start="117171" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCT-GATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</genome_strand>
        <mrna_strand>TTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGGTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTAGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGAGGTAGAAACAGGGGACATGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482666" ref_strand="+" ref_description="SGN-E482666 [cSTE-1-O3]">
      <seq>tctggtccacacaaatcaagggaacgtttgccattggttattatcctcaggaacaggttgaaatatgcctttgaccatacccgtgaggtcatttcaatcttgatgccaaccgccaagttatggttgatgggaaagttaggaccagataagacttaccctgctggtttcattggatgttgttacgattccaaagacgaatgagagcttccgacttctttatgacacttaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttacctggtggtagaaacagggggcgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116886" stop="118375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117186" g_stop="117351" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.85"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="272" r_length="99" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117861" g_stop="118075" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="488" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E482666" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117186" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATG-CATTGA-CATA-CCGTGAGGTCATTTCTATCTTGATG-CAA-CGCCAAGTTATGGTTGATGGGAAAATTAGGA-CAGATAAAACATACCCTGCTGGTTTCA-TGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACAC-TAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGA-CTGGTGGTAGAAACAGGGGACGTGT</genome_strand>
        <mrna_strand>TCTGGTCCACACAAATCAAGGGAACGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCCTTTGACCATACCCGTGAGGTCATTTCAATCTTGATGCCAACCGCCAAGTTATGGTTGATGGGAAAGTTAGGACCAGATAAGACTTACCCTGCTGGTTTCATTGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACCTGGTGGTAGAAACAGGGGGCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576149" ref_strand="+" ref_description="SGN-E576149 [59322]">
      <seq>cacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccgtgggtgtctctacctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116895" stop="118520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117195" g_stop="117351" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="255" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117861" g_stop="118220" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="615" r_length="360" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E576149" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117195" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAG</genome_strand>
        <mrna_strand>CACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725403" ref_strand="+" ref_description="SGN-E725403 [FC26DH12]">
      <seq>agggaatgtttgccattggttattatccttagaagcaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccacctcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacccttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116904" stop="118665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117204" g_stop="117351" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="246" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117861" g_stop="118429" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="818" r_length="572" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E725403" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117204" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCA-TTCTTATTTTT-GTGTTGCATTTTGACAT-CTGTGTACTCGGTACTGCTTTACATACCTTTTTTAT</genome_strand>
        <mrna_strand>AGGGAATGTTTGCCATTGGTTATTATCCTTAGAAGCAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405824" ref_strand="+" ref_description="SGN-E405824 [PPI-1-B2]">
      <seq>gtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacttaccctgctggtttcatggatgttgttacgattccaaagacgaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatggggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagctacaactgcgtaaaatgataggttgaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116911" stop="118614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117211" g_stop="117351" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="239" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117861" g_stop="118314" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="693" r_length="454" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E405824" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117211" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCAT-GGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTG</genome_strand>
        <mrna_strand>GTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCAAAGACGAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCTACAACTGCGT-AAAATGATAGGTTGAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287421" ref_strand="+" ref_description="SGN-E287421 [cLES-15-D3]">
      <seq>tattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116924" stop="118291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117224" g_stop="117351" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="226" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117861" g_stop="117991" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="357" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E287421" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117224" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="117991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTT</genome_strand>
        <mrna_strand>TATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465780" ref_strand="+" ref_description="SGN-E465780 [cPRO-22-A12]">
      <seq>agggtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccgtgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagcgacaactgcttaaaaatgatanggtgaacttgagatgaattttatagattgggccatgtttctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116965" stop="118649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117262" g_stop="117351" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="188" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117861" g_stop="118349" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="677" r_length="489" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E465780" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117262" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTT</genome_strand>
        <mrna_strand>AGGGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCGACAACTGCTTAAAAATGATANGGTGAACTTGAGATGAATTTTATAGATTGGGCCATGTTTCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277531" ref_strand="+" ref_description="SGN-E277531 [cLER-6-A11]">
      <seq>attaggacagataagacgtaccctgctggtttcatggttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttcggcaatatttctctttgtttagagggatgccattcttatttttgtgttgcattttgacatctgtgtactcggtactgctttacatacctttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117015" stop="118732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117315" g_stop="117351" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117352" i_stop="117860" i_length="509">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117861" g_stop="118431" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="608" r_length="571" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E277531" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117315" e_stop="117351"/>
          <exon e_start="117861" e_stop="118431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTT</genome_strand>
        <mrna_strand>ATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGCAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348781" ref_strand="+" ref_description="SGN-E348781 [cTOF-29-G14]">
      <seq>taagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgaagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatggggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttcggcaatatttctctttgtttagagggatgccattcttattttttgtgttgcattttgacatctgtgtactcggtactgctttacatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117026" stop="118721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117326" g_stop="117351" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117352" i_stop="117628" i_length="277">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.600" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117629" g_stop="117726" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="125" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117861" g_stop="118421" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="688" r_length="563" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E348781" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117326" e_stop="117351"/>
          <exon e_start="117629" e_stop="117726"/>
          <exon e_start="117861" e_stop="118421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATG-AGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCAT-GGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTA-TTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACC</genome_strand>
        <mrna_strand>TAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGCAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269603" ref_strand="+" ref_description="SGN-E269603 [cLEM-2-H1]">
      <seq>ttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117332" stop="118649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117632" g_stop="117726" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117861" g_stop="118349" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="584" r_length="489" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E269603" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117632" e_stop="117726"/>
          <exon e_start="117861" e_stop="118349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTT</genome_strand>
        <mrna_strand>TTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271440" ref_strand="+" ref_description="SGN-E271440 [cLEM-5-J15]">
      <seq>ttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117332" stop="118602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117632" g_stop="117726" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117861" g_stop="118302" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="537" r_length="442" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E271440" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117632" e_stop="117726"/>
          <exon e_start="117861" e_stop="118302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCAT</genome_strand>
        <mrna_strand>TTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268275" ref_strand="+" ref_description="SGN-E268275 [cLEM-3-A10]">
      <seq>ttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117332" stop="118548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117632" g_stop="117726" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117861" g_stop="118248" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="483" r_length="388" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E268275" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117632" e_stop="117726"/>
          <exon e_start="117861" e_stop="118248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTG</genome_strand>
        <mrna_strand>TTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320781" ref_strand="+" ref_description="SGN-E320781 [cTOB-27-M13]">
      <seq>aaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcatagggtgtacttgagattaatttaatagatttggtcatttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117345" stop="118647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117645" g_stop="117726" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117861" g_stop="118347" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="569" r_length="487" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E320781" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117645" e_stop="117726"/>
          <exon e_start="117861" e_stop="118347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCT</genome_strand>
        <mrna_strand>AAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGGTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716698" ref_strand="+" ref_description="SGN-E716698 [FB17DB08]">
      <seq>gataaatgagagtttcagacttccttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatcataggttgaacttgagatgaatttaataggttcggtaatatttctctttgtttagagggatgccattcttatttttgtgttgcattttgacatctgtgtactcggtactgctttacataccttttttattttgtcaggaacaagaaagacagttttgatcaatcagttgccttctatgtgatagtattttatttttattgccacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117348" stop="118807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117648" g_stop="117726" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117861" g_stop="118515" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="734" r_length="655" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E716698" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117648" e_stop="117726"/>
          <exon e_start="117861" e_stop="118515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTTTGTCAGGAACAAGAAAGACAGTTTTGATCAATCAGTTGCCTTCTATGTGATAGTATTTTATTTTTATTGCCACAGAGTTTAATG</genome_strand>
        <mrna_strand>GATAAATGAGAGTTTCAGACTTCCTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTTTGTCAGGAACAAGAAAGACAGTTTTGATCAATCAGTTGCCTTCTATGTGATAGTATTTTATTTTTATTGCCACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260393" ref_strand="+" ref_description="SGN-E260393 [cLEG-66-I7]">
      <seq>gagaactaggagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117348" stop="118330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117648" g_stop="117726" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117861" g_stop="118030" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="249" r_length="170" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E260393" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>249</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117648" e_stop="117726"/>
          <exon e_start="117861" e_stop="118030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGT</genome_strand>
        <mrna_strand>GAGAACTAGGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239523" ref_strand="+" ref_description="SGN-E239523 [cLED-23-P2]">
      <seq>aggaagccaagttcaaactttgtatggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117559" stop="118472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117716" g_stop="117726" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117727" i_stop="117860" i_length="134">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117861" g_stop="118172" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="323" r_length="312" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E239523" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117716" e_stop="117726"/>
          <exon e_start="117861" e_stop="118172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAAT</genome_strand>
        <mrna_strand>AGGAAGCCAAG......................................................................................................................................TTCAAACTTTGTATGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691434" ref_strand="+" ref_description="SGN-E691434 [LH_Ea06B16]">
      <seq>tcattttaagggccgaattnggnangagggncaagaacaaactcccttagggtcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatcccctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatcataggttaaacttgagatgagcttaataggttgagcaatatttctctttgtttaaaggggatgccattcttatttttgtgttgcattttgacatctgtgtactcggtactgctttacatacctttttttttgtcaagaaaaaagaaagactcaattttgatcaatcagttgccttcttctatgtgatagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117574" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117861" g_stop="118487" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="667" r_length="632" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E691434" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117861" e_stop="118487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGA-GGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTTTGTCAGGAACAAGAAAGA--CAGTTTTGATCAATCAGTTG-C--CTTCTATGTGATAGTAT</genome_strand>
        <mrna_strand>AACAAACTCCCTTAGGGTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCCCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTAAACTTGAGATGAGCTTAATAGGTTGAGCAATATTTCTCTTTGTTTAAAGGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTT-TTTGTCAAGAAAAAAGAAAGACTCAATTTTGATCAATCAGTTGCCTTCTTCTATGTGATAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251542" ref_strand="+" ref_description="SGN-E251542 [cLEG-9-C18]">
      <seq>actttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117566" stop="118647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117866" g_stop="118347" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E251542" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117866" e_stop="118347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCT</genome_strand>
        <mrna_strand>ACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357323" ref_strand="+" ref_description="SGN-E357323 [cTOS-23-G8]">
      <seq>tttttttggaaggcaactgattgatcaaaactgtctttcttgttcctgacaaaaaaaaaaggtatgtaaagcagtaccgagtacacagatgtcaaaatgcaacacaaaaataagaatggcatccctctaaacaaagagaaatattgccgaacctattaaattcatctcaagttcaacctatcatttttaagcagttgtagctgattgagcagccatcctcttgcgagcctcttcaatgatagataacttgataccctttacccttaggtagagacacccatgggcttactacccttaccaagagtgaacacattgccccagacgagtagcaaactcgtgcccccaggagtcctgaatgtgaactgtctcaaagctacccttgtgcttctctctattcttaaggattccacacgtcccctgtttctaccaccagtcaccatgaccacattaccaacatcaaatttgatgaaagtcacaatcttattggaatctaagtccagcttgatggtgtcattggccttgatgaggggatcaggntagcggattgtcttccatcatacgtgttgagatatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="118776" stop="117608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118482" g_stop="117908" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E357323" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118482" e_stop="117908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACATAGAAGGCAACTGATTGATCAAAACTGTCTTTCTTGTTCCTGACAAAATAAAAAAGGTATGTAAAGCAGTACCGAGTACACAGATGTCAAAATGCAACACAAAAATAAGAATGGCATCCCTCTAAACAAAGAGAAATATTACCGAACCTATTAAATTCATCTCAAGTTCAACCTATGATTTTTAAGCAGTTGTAGCTGATTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATA-CCTTTACCCTTAGGTAGAGACACCCAT-GGCTTACTACCCTTACCAAGAGTGAACACATTG-CCCAGACGAGTAGCAAACTCGTGCCCCAGGGAGTCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGGATTCCAACACGTCCCCTGTTTCTACCACCAGTCACCATGACCACATTACCAACATCAAATTTGATG-AAGTCAACAATCTTATTGGAATCTAAGTCCAGCTTGATGGTGTCATTGGCCTTGATGAGGGGATCAGGGTAGCGGATTGTTCTTCCATCATAAGTATTGAGATATGGG</genome_strand>
        <mrna_strand>TTTTTTTGGAAGGCAACTGATTGATCAAAACTGTCTTTCTTGTTCCTGACAAAA-AAAAAAGGTATGTAAAGCAGTACCGAGTACACAGATGTCAAAATGCAACACAAAAATAAGAATGGCATCCCTCTAAACAAAGAGAAATATTGCCGAACCTATTAAATTCATCTCAAGTTCAACCTATCATTTTTAAGCAGTTGTAGCTGATTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCCTTTACCCTTAGGTAGAGACACCCATGGGCTTACTACCCTTACCAAGAGTGAACACATTGCCCCAGACGAGTAGCAAACTCGTGCCCCCAGGAGTCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGGATTCC-ACACGTCCCCTGTTTCTACCACCAGTCACCATGACCACATTACCAACATCAAATTTGATGAAAGTC-ACAATCTTATTGGAATCTAAGTCCAGCTTGATGGTGTCATTGGCCTTGATGAGGGGATCAGGNTAGCGGATTG-TCTTCCATCATACGTGTTGAGATATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357281" ref_strand="+" ref_description="SGN-E357281 [cTOS-23-G17]">
      <seq>tttttttggaaggcaactgattgatcaaaactgtctttcttgttcctgacaaaaaaaaaaggtatgtaaagcagtaccgagtacacagatgtcaaaatgcaacacaaaaataagaatggcatccctctaaacaaagagaaatattgccgaacctattaaattcatctcaagttcaacctatcatttttaagcagttgtagctgattgagcagccatcctcttgcgagcctcttcaatgatagataacttgatacctttacccttaggtagagacacccatggcttactacccttaccaagagtgaacacattgcccagacgagtagcaaactcgtgccccagggagtcctgaatgtgaactgtctcaaagctacccttgtgcttctctctattcttaaggattccaacacgtcccctgtttctaccaccagtcaccatgaccacattaccaacatcaaatttgatgaagtcaacaatcttattggaatctaagtccagcttgatggtgtcattggccttgatgaggggatcagggtagcggattgttcttccatcatacgtgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="118776" stop="117616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118482" g_stop="117916" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E357281" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118482" e_stop="117916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACATAGAAGGCAACTGATTGATCAAAACTGTCTTTCTTGTTCCTGACAAAATAAAAAAGGTATGTAAAGCAGTACCGAGTACACAGATGTCAAAATGCAACACAAAAATAAGAATGGCATCCCTCTAAACAAAGAGAAATATTACCGAACCTATTAAATTCATCTCAAGTTCAACCTATGATTTTTAAGCAGTTGTAGCTGATTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTACCCTTAGGTAGAGACACCCATGGCTTACTACCCTTACCAAGAGTGAACACATTGCCCAGACGAGTAGCAAACTCGTGCCCCAGGGAGTCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGGATTCCAACACGTCCCCTGTTTCTACCACCAGTCACCATGACCACATTACCAACATCAAATTTGATGAAGTCAACAATCTTATTGGAATCTAAGTCCAGCTTGATGGTGTCATTGGCCTTGATGAGGGGATCAGGGTAGCGGATTGTTCTTCCATCATAAGTATTGA</genome_strand>
        <mrna_strand>TTTTTTTGGAAGGCAACTGATTGATCAAAACTGTCTTTCTTGTTCCTGACAAAA-AAAAAAGGTATGTAAAGCAGTACCGAGTACACAGATGTCAAAATGCAACACAAAAATAAGAATGGCATCCCTCTAAACAAAGAGAAATATTGCCGAACCTATTAAATTCATCTCAAGTTCAACCTATCATTTTTAAGCAGTTGTAGCTGATTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTACCCTTAGGTAGAGACACCCATGGCTTACTACCCTTACCAAGAGTGAACACATTGCCCAGACGAGTAGCAAACTCGTGCCCCAGGGAGTCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGGATTCCAACACGTCCCCTGTTTCTACCACCAGTCACCATGACCACATTACCAACATCAAATTTGATGAAGTCAACAATCTTATTGGAATCTAAGTCCAGCTTGATGGTGTCATTGGCCTTGATGAGGGGATCAGGGTAGCGGATTGTTCTTCCATCATACGTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225903" ref_strand="+" ref_description="SGN-E225903 [cLEL-31-A19](-)">
      <seq>aagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcccaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117681" stop="118671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117981" g_stop="118370" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="409"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E225903" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117981" e_stop="118370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTT</genome_strand>
        <mrna_strand>AAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCCCAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215401" ref_strand="+" ref_description="SGN-E215401 [cLEL-20-G21](-)">
      <seq>gattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttcggcaatatttctctttgtttagagggatgccattcttatttttgtgttgcattttgacatctgtgtactcggtactgctttacataccttttttttttgtcaggaacaagaaagacagttttgatcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117704" stop="118762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118004" g_stop="118461" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="458" polyA_stop="476"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E215401" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118004" e_stop="118461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTTTGTCAGGAACAAGAAAGACAGTTTTGATCA</genome_strand>
        <mrna_strand>GATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGCAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTT-TTTTGTCAGGAACAAGAAAGACAGTTTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226191" ref_strand="+" ref_description="SGN-E226191 [cLEL-31-A19](-)">
      <seq>aagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117721" stop="118671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118020" g_stop="118370" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="370"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E226191" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118020" e_stop="118370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTT</genome_strand>
        <mrna_strand>AAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215305" ref_strand="+" ref_description="SGN-E215305 [cLEL-20-G21](-)">
      <seq>atttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttcggcaatatttctctttgtttagagggatgccattcttatttttgtgttgcattttgacatctgtgtactcggtactgctttacataccttttttttttgtcaggaacaagaaagacagttttgatcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117722" stop="118762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118022" g_stop="118461" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="458"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E215305" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118022" e_stop="118461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTTTGTCAGGAACAAGAAAGACAGTTTTGATCA</genome_strand>
        <mrna_strand>ATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGCAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTT-TTTTGTCAGGAACAAGAAAGACAGTTTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215372" ref_strand="+" ref_description="SGN-E215372 [cLEL-20-C10](-)">
      <seq>tactcgtttgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtgaaggtatcaagttatctatcattgaaaaggctcgcaagaggagtggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttcggcaatatttctctttgtttagagggaggccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117857" stop="118666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118157" g_stop="118366" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E215372" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118157" e_stop="118366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGA-TGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCAT</genome_strand>
        <mrna_strand>TACTCGTTTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTGAAGGTATCAAGTTATCTATCATTGAAAAGGCTCGCAAGAGGAGTGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGCAATATTTCTCTTTGTTTAGAGGGAGGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263941" ref_strand="+" ref_description="SGN-E263941 [cLEG-64-C10]">
      <seq>tatcttcgactcgttagggtttaagacaaacacatctcgccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaaaggccgggtccgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119752" stop="121970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120052" g_stop="120140" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="167" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="348" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121670" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="419" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E263941" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120052" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCGACTCGTTAGGGTTTAAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTC</genome_strand>
        <mrna_strand>TATCTTCGACTCGTTAGGGTTTAAGACAAACACATCTCGCCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAAGGCCGGGTCCGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725226" ref_strand="+" ref_description="SGN-E725226 [FC26BH02]">
      <seq>cggccaaatcggccgaattgaagacacacacctcccttaaaaagccgttactcgccgcagctaatcagtcggaaacccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcaaagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="122410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120054" g_stop="120140" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.701"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.80"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="165" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="346" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="444" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122110" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="768" r_length="324" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E725226" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120054" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCGACTCGTTAGGGTTTAAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTT</genome_strand>
        <mrna_strand>CGGCCAAATCGGCCGAATTGAAGACACACACCTCCCTTAAAAAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAACCCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAAAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745462" ref_strand="+" ref_description="SGN-E745462 [GI|47105616]">
      <seq>gatctcattagggttgaagacacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacaggtaagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatgttgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccacctcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactgagtttagaccaatcagttgcctttttatgtgatggtatttcattgtaagagtttaaggaccttgtcgatgagtttattcacttgtttcaaaatgagtttttggttgtaatatcttcaaatccaacctgctgttgtattccaaagttggtgtagttcactaaacctgattcgtaatttcattttcataaacttcaaatgatgtgggttcttttgtcctactaattgtacaatcaaacataattgacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115859" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120059" g_stop="120140" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="161" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="342" r_length="181" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="440" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122620" g_length="834"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="1268" r_length="828" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1276" polyA_stop="1292"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E745462" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>1273</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120059" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GA-CTCGTTAGGGTTTAAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCC-GTTCTTATTTTTGTGTGTTCCATTTCAATAT-TTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCC-TTCTATGTTATAGTATTTTATTGCGACTGAGTTTAAGGACACCTTGTCCATGAGTTTATTAACTTAATTCAAAATGAGTTTTTGGTTGTAATATTTTTTAAACTGACCCGGAGTTGGATTCCAAATTTGGTATTCTTCACTTAACCTGATTCCTAATTTTTTTTTGGTCATTTAACTTCCGATTAAGTTAGCTCTTTTGTCCTGCTAATAGTATAATCAAAC</genome_strand>
        <mrna_strand>GATCTCATTAGGGTTGAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGGTAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGTTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTG-GTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTG-TA-AGAGTTTAAGG--ACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTGGTGTAGTTCACTAAACCTGATTCGTAA-TTTCATTT--TCA-TAAACTTCAAATGATGTGGGTTCTTTTGTCCTACTAATTGTACAATCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717828" ref_strand="+" ref_description="SGN-E717828 [FC02DE02]">
      <seq>aatcggccgaattggaagagacacacctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115874" stop="122471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120060" g_stop="120140" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.778"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="160" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="341" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="439" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122171" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="824" r_length="385" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E717828" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120060" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCGTTAGGGTT-TAAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGAAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347462" ref_strand="+" ref_description="SGN-E347462 [cTOF-33-L13]">
      <seq>ttgaagacacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactncggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119770" stop="122312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120071" g_stop="120140" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="149" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="330" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="428" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122012" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="654" r_length="226" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E347462" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120071" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTT-GGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTA</genome_strand>
        <mrna_strand>TTGAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTNCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724611" ref_strand="+" ref_description="SGN-E724611 [FC24CE11]">
      <seq>tgaagagacacacctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacaaataaaacttaccctgctggtttcatggatgttgttactattccaaagacaaatgaaagcttccgacttctttatgacactaagggtcggttccgcctccactcactcaaagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatgtaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115870" stop="122336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120072" g_stop="120140" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="147" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="328" r_length="181" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="426" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122036" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="676" r_length="250" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E724611" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120072" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTA</genome_strand>
        <mrna_strand>TGAAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAAATAAAACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAAAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAAAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGTAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321969" ref_strand="+" ref_description="SGN-E321969 [cTOB-29-M24]">
      <seq>gaagacacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctgnggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119774" stop="122442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120073" g_stop="120140" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="146" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="327" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="425" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122142" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="781" r_length="356" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E321969" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120073" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACC</genome_strand>
        <mrna_strand>GAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGNGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327367" ref_strand="+" ref_description="SGN-E327367 [cTOC-19-E13]">
      <seq>gaagacacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119774" stop="122272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120073" g_stop="120140" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="146" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="327" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="425" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121972" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="611" r_length="186" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E327367" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120073" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATG</genome_strand>
        <mrna_strand>GAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703877" ref_strand="+" ref_description="SGN-E703877 [FA22CH06]">
      <seq>aagagacacacctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaagtatcaagttatctattattgaagaggctcgcaagaggatggctgctcaatcagctacaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115874" stop="122516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120074" g_stop="120140" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.866"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="145" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="326" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="424" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122216" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="854" r_length="430" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E703877" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120074" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTG</genome_strand>
        <mrna_strand>AAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAAGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729973" ref_strand="+" ref_description="SGN-E729973 [LA22CF08]">
      <seq>gacacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctaccctagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcacctacaactgcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119776" stop="122522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120076" g_stop="120140" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="324" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="422" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122222" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="858" r_length="436" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E729973" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120076" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAA</genome_strand>
        <mrna_strand>GACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCCTAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCACCTACAACTGCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700467" ref_strand="+" ref_description="SGN-E700467 [FA13AH03]">
      <seq>gccattttacctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattcccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcattgaaaaagctcgcaagaggaatggctgctcaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119783" stop="122506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120076" g_stop="120140" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="144" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="325" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="423" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122206" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="845" r_length="422" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E700467" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120076" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACA-AACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACT-CCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGG-ATGGCTGCCCAATCA</genome_strand>
        <mrna_strand>GCCATTTTACCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAAAAGCTCGCAAGAGGAATGGCTGCTCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707848" ref_strand="+" ref_description="SGN-E707848 [FA34AE12]">
      <seq>cactcacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatgtggtgctggttaatatcgtatgtgcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119777" stop="122469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120076" g_stop="120140" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120380" i_length="240">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120381" g_stop="120407" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="88" r_length="23" r_score="0.556"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120408" i_stop="120978" i_length="571">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="166" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="347" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="445" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121787" g_stop="122169" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="828" r_length="383" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E707848" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120076" e_stop="120140"/>
          <exon e_start="120381" e_stop="120407"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTAT</genome_strand>
        <mrna_strand>CACTCACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................TGGT-G-CTG-GTTAAT-ATCGTATGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697698" ref_strand="+" ref_description="SGN-E697698 [FA03DD12]">
      <seq>cgcaaacacatctcgccggtagccatcactcgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattccaaactccctggggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119778" stop="122375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120076" g_stop="120140" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="324" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="422" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122075" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="711" r_length="289" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E697698" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120076" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATG</genome_strand>
        <mrna_strand>CGCAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCCAAACTCCCTGGGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340873" ref_strand="+" ref_description="SGN-E340873 [cTOF-5-N6]">
      <seq>gacacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataactncggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacggggaacgtgttggaattcttaagacagggagaagcacaaggtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119776" stop="122338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120076" g_stop="120140" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="324" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="422" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122038" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="672" r_length="250" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E340873" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120076" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGC</genome_strand>
        <mrna_strand>GACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAACTNCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACGGGGAACGTGTTGGAATTCTTAAG-ACAGGGAGAAGCACAA-GGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728213" ref_strand="+" ref_description="SGN-E728213 [LA17AC09]">
      <seq>acacatacctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="122441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120077" g_stop="120140" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.859"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="323" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="421" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122141" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="776" r_length="355" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E728213" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120077" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTAC</genome_strand>
        <mrna_strand>ACACATACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301022" ref_strand="+" ref_description="SGN-E301022 [cLEW-22-M3]">
      <seq>acacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaaaggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaaaggtatcccatatctcaacacgtatgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119777" stop="122158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120077" g_stop="120140" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="323" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="421" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121858" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="493" r_length="72" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E301022" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120077" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGA</genome_strand>
        <mrna_strand>ACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAAGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAAGGTATCCCATATCTCAACACGTATGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708726" ref_strand="+" ref_description="SGN-E708726 [FA36CD09]">
      <seq>cacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttctctatcattgaaaaagctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115879" stop="122534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120078" g_stop="120140" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="141" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="322" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="420" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122234" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="868" r_length="448" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E708726" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120078" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTG</genome_strand>
        <mrna_strand>CACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTCTCTATCATTGAAAAAGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703076" ref_strand="+" ref_description="SGN-E703076 [FA20CA01]">
      <seq>cacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115879" stop="122475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120078" g_stop="120140" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="141" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="322" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="420" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122175" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="809" r_length="389" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E703076" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120078" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGA</genome_strand>
        <mrna_strand>CACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739843" ref_strand="+" ref_description="SGN-E739843 [LC19AD06]">
      <seq>ccatacatctcgccggtagccatcactcgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaagatggctgcccaatcagctacaactgctttaaaatcttagtttgaacttgagatgagattaataggttgggccatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119781" stop="122568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120079" g_stop="120140" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="419" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122268" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="901" r_length="482" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E739843" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120079" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATT</genome_strand>
        <mrna_strand>CCATACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAAGATGGCTGCCCAATCAGCTACAACTGCTTTAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212410" ref_strand="+" ref_description="SGN-E212410 [cLEC-74-J3]">
      <seq>acacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacagttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaaggtttaaacctgtttcctgcttcttctttgttccggcttgctttggatgctgtgctgttaaagtagtgaccttgttttctgctctctgcagttcaaactttgcaaggttcgatcagtgcagtttggacagaatggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaagccaatgacaccatcaagctggacttagattccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115879" stop="122226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120079" g_stop="120140" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121926" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="649" r_length="328" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E212410" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120079" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATT-AAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAA</genome_strand>
        <mrna_strand>ACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACAGTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTAAACCTGTTTCCTGCTTCTTCTTTGTTCCGGCTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAATGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAAGCCAATGACACCATCAAGCTGGACTTAGATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316807" ref_strand="+" ref_description="SGN-E316807 [cTOB-6-G1]">
      <seq>acacacctttcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgagaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagcttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115879" stop="122180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120079" g_stop="120140" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="419" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121880" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="513" r_length="94" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E316807" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120079" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATC</genome_strand>
        <mrna_strand>ACACACCTTTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGAGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGCTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317513" ref_strand="+" ref_description="SGN-E317513 [cTOB-17-M11]">
      <seq>acacacctctcgccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115879" stop="121986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120079" g_stop="120140" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121686" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="408" r_length="87" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E317513" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120079" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATG</genome_strand>
        <mrna_strand>ACACACCTCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315630" ref_strand="+" ref_description="SGN-E315630 [cTOA-22-J21]">
      <seq>acacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115879" stop="121978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120079" g_stop="120140" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121678" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="400" r_length="79" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E315630" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120079" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACT</genome_strand>
        <mrna_strand>ACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337108" ref_strand="+" ref_description="SGN-E337108 [cTOE-7-M20]">
      <seq>gaggctctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaaccatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115885" stop="121924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120080" g_stop="120140" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.852"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="139" r_length="79" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="320" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121624" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="345" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E337108" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120080" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAA-CATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAA</genome_strand>
        <mrna_strand>GAGGC-TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269264" ref_strand="+" ref_description="SGN-E269264 [cLEM-18-E2]">
      <seq>acacatctcgccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119781" stop="122281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120081" g_stop="120140" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121981" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="612" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E269264" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120081" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGT</genome_strand>
        <mrna_strand>ACACATCTCGCCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322641" ref_strand="+" ref_description="SGN-E322641 [cTOB-26-A14]">
      <seq>acgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataaagatgttgacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115881" stop="122243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120081" g_stop="120140" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121943" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="574" r_length="157" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E322641" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120081" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCA</genome_strand>
        <mrna_strand>ACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAAGATGTTGACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321706" ref_strand="+" ref_description="SGN-E321706 [cTOB-25-I13]">
      <seq>acgcctctcgccggtagacgtcactctcggcagctaatctttcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgaaggcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctccacacgtatgatggaaaaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119781" stop="122208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120081" g_stop="120140" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121908" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="539" r_length="122" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E321706" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120081" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAA</genome_strand>
        <mrna_strand>ACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTTTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAAGGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCCACACGTATGATGGAAAAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279640" ref_strand="+" ref_description="SGN-E279640 [cLER-5-O19]">
      <seq>acgcctctcgccggtagacgtcactctcggctgctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggctgaaatatgcgttgacctaccgtgaggtcatttctatctcgatgcaacgccaagttatggttgatgggaaagttataacacataacacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgcctacactcacttatagatgaggaagccaagttcaaactttgcaaggtacgatcactgcagtttgaacagaagggtatcccatatctcaacacgtatgatggaagaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115881" stop="122165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120081" g_stop="120140" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121865" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="496" r_length="79" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E279640" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120081" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAA</genome_strand>
        <mrna_strand>ACGCCTCTCGCCGGTAGACGTCACTCTCGGCTGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGCTGAAATATGCGTTGACCTACCGTGAGGTCATTTCTATCTCGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTATAACACATAACACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTACACTCACTTATAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTACGATCACTGCAGTTTGAACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323971" ref_strand="+" ref_description="SGN-E323971 [cTOC-3-O24]">
      <seq>acgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115881" stop="122158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120081" g_stop="120140" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121858" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="489" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E323971" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120081" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGA</genome_strand>
        <mrna_strand>ACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335435" ref_strand="+" ref_description="SGN-E335435 [cTOE-2-D24]">
      <seq>acacctctcgccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115881" stop="122009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120081" g_stop="120140" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121798" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="429" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E335435" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120081" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGT</genome_strand>
        <mrna_strand>ACACCTCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709191" ref_strand="+" ref_description="SGN-E709191 [FA42DH07]">
      <seq>cgctctcgccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115885" stop="122552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120082" g_stop="120140" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122253" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="882" r_length="467" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E709191" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120082" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAAT</genome_strand>
        <mrna_strand>CGC-TCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731323" ref_strand="+" ref_description="SGN-E731323 [LA26DB08]">
      <seq>cacctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctattattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="122475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120082" g_stop="120140" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="137" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="318" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="416" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122175" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="805" r_length="389" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E731323" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120082" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGA</genome_strand>
        <mrna_strand>CACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704671" ref_strand="+" ref_description="SGN-E704671 [FA24DG07]">
      <seq>cacctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="122471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120082" g_stop="120140" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="137" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="318" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="416" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122171" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="801" r_length="385" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E704671" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120082" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCA</genome_strand>
        <mrna_strand>CACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726342" ref_strand="+" ref_description="SGN-E726342 [LA11CB11]">
      <seq>acctctcgccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtattcagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115883" stop="122544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120083" g_stop="120140" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122244" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="873" r_length="458" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E726342" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120083" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGAT</genome_strand>
        <mrna_strand>ACCTCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATTCAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347704" ref_strand="+" ref_description="SGN-E347704 [cTOF-26-I5]">
      <seq>acctctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaaggggtagcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115883" stop="122343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120083" g_stop="120140" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122038" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="668" r_length="253" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E347704" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120083" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAA-GGGTAGC</genome_strand>
        <mrna_strand>ACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331024" ref_strand="+" ref_description="SGN-E331024 [cTOD-6-G7]">
      <seq>gcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119784" stop="122256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120083" g_stop="120140" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121956" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="585" r_length="170" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E331024" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120083" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGT</genome_strand>
        <mrna_strand>GCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365881" ref_strand="+" ref_description="SGN-E365881 [cLPT-11-E12]">
      <seq>accactcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactgggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggattcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115883" stop="121953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120083" g_stop="120140" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121653" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="371" r_length="54" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E365881" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120083" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTA</genome_strand>
        <mrna_strand>ACCACTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTGGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGATTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702349" ref_strand="+" ref_description="SGN-E702349 [FA18BH08]">
      <seq>ctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctattattgaagaggctcgcaagaggatggctgctncatcagctacaactgcttaataatcataggttgaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="122540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120085" g_stop="120140" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="134" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="315" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="413" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122240" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="867" r_length="454" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E702349" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120085" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTG</genome_strand>
        <mrna_strand>CTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTNCATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703203" ref_strand="+" ref_description="SGN-E703203 [FA20DD06]">
      <seq>ctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctattattgaagaggctcgcaagaggatggctgctcaatcacctacaactgcttaataatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="122526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120085" g_stop="120140" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="134" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="315" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="413" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122227" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="854" r_length="441" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E703203" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120085" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCT</genome_strand>
        <mrna_strand>CTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCACCTACAACTGCTTAATAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543424" ref_strand="+" ref_description="SGN-E543424 [TUS-65-D18]">
      <seq>ctctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactgggtggtagaaacaggggaccntgtttggaatttcttagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctgnggcatgagttcgctacccgtttgggggatgtgttcactcttggtaaaggtagtaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115885" stop="122427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120085" g_stop="120140" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="134" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="315" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="413" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122127" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="757" r_length="344" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E543424" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120085" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACT-GGTGGTAGAAACAGGGGA-CGTG-TTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCC</genome_strand>
        <mrna_strand>CTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGGTGGTAGAAACAGGGGACCNTGTTTGGAATTTCTTAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGNGGCATGAGTTCGCTACCCGTTTGGGGGATGTGTTCACTCTTGGTAAAGGTAGTAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730233" ref_strand="+" ref_description="SGN-E730233 [LA23CA05]">
      <seq>tctcgtcggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaanggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctagggtggacttatgatgaatttaacaggttgggccatgattctccctgtttaaagatacaatctcattttgtatgttgaattttagcaaatttgtatttggaaccgtttaactttgttttgttgggaaaatagtttgactgagtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115886" stop="122583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120086" g_stop="120140" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122317" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="939" r_length="527" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1001" polyA_stop="1014"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E730233" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>943</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120086" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCA</genome_strand>
        <mrna_strand>TCTCGTCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAANGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGGTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCCCTGTTTA-A-AGAT-ACAATCTCA-TTTTGTATGTTGAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212229" ref_strand="+" ref_description="SGN-E212229 [cLEC-75-E8]">
      <seq>tctcgccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctgnggcatgagtttgctaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119786" stop="122387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120086" g_stop="120140" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122087" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="713" r_length="301" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E212229" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120086" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCC</genome_strand>
        <mrna_strand>TCTCGCCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGNGGCATGAGTTTGCTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342673" ref_strand="+" ref_description="SGN-E342673 [cTOF-7-P21]">
      <seq>tctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactgggtgtagaaacaggggacgtgttggaattcttagaatagagagaagcacagggtagctttgagacagttcacattcaggattccctggggcatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115886" stop="122378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120086" g_stop="120140" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122078" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="702" r_length="290" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E342673" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120086" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGT</genome_strand>
        <mrna_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGGTGTAGAAACAGGGGACGTGTTGGAATTCTT-AGAATAGAGAGAAGCAC-AGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346943" ref_strand="+" ref_description="SGN-E346943 [cTOF-25-A1]">
      <seq>tctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115886" stop="122355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120086" g_stop="120140" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122055" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="681" r_length="269" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E346943" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120086" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACAT</genome_strand>
        <mrna_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248629" ref_strand="+" ref_description="SGN-E248629 [cLEF-58-G12]">
      <seq>tctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaaaggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115886" stop="122326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120086" g_stop="120140" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122026" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="652" r_length="240" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E248629" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120086" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAG</genome_strand>
        <mrna_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAAGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342628" ref_strand="+" ref_description="SGN-E342628 [cTOF-7-B9]">
      <seq>tctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatgggcaagagggttgaagaaacatttgaaagacggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115886" stop="122266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120086" g_stop="120140" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="136" r_length="81" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121966" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="595" r_length="180" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E342628" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120086" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGG-CAAGAGGGTTGAAGAAACATTTG-AAGA-GGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTG</genome_strand>
        <mrna_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGAGGGTTGAAGAAACATTTGAAAGACGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390216" ref_strand="+" ref_description="SGN-E390216 [TUS-39-H18]">
      <seq>tctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115886" stop="122183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120086" g_stop="120140" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="509" r_length="97" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E390216" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120086" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCC</genome_strand>
        <mrna_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311422" ref_strand="+" ref_description="SGN-E311422 [cLEZ-18-G19]">
      <seq>tctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115886" stop="122012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120086" g_stop="120140" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121799" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="425" r_length="13" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E311422" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120086" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTA</genome_strand>
        <mrna_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324704" ref_strand="+" ref_description="SGN-E324704 [cTOC-8-G18]">
      <seq>gctcgccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115887" stop="121990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120086" g_stop="120140" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121690" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="405" r_length="91" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E324704" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120086" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGA</genome_strand>
        <mrna_strand>GCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288276" ref_strand="+" ref_description="SGN-E288276 [cLES-16-H1]">
      <seq>ctcgccgttagccgttactcgccgcagctaataagtctgtaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgtagacgtaccgtgaggtcatttctatcttgatgcagcgccaagatatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgtaggtactattccaaagacgaatgagagcttcccacttttttatgacactaaaggtcggttacgtctccactcactcagagatgaggaagccaaattcaaactttgtgaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatgcgctaccctgatcccctcatcaaggccgatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115887" stop="122255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120087" g_stop="120140" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="0.898"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121955" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="581" r_length="169" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E288276" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120087" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTC-GGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATG</genome_strand>
        <mrna_strand>CTCGCCGTTAGCCGTTACTCGCCGCAGCTAATAAGTCTGTAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTAGACGTACCGTGAGGTCATTTCTATCTTGATGCAGCGCCAAGATATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTAGGTACTATTCCAAAGACGAATGAGAGCTTCCCACTTTTTTATGACACTAAAGGTCGGTTACGTCTCCACTCACTCAGAGATGAGGAAGCCAAA.........................................................................................TTCAAACTTTGTGAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATGCGCTACCCTGATCCCCTCATCAAGGCCGATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441157" ref_strand="+" ref_description="SGN-E441157 [cSTA-29-K8]">
      <seq>ctcgccggtagccgtcactcgtgccagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgccgaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttgaaactttgtaaggttcgatcagtgcagtttggacagaaagggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119787" stop="122215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120087" g_stop="120140" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="132" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="313" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="411" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121915" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="540" r_length="129" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E441157" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120087" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGAC</genome_strand>
        <mrna_strand>CTCGCCGGTAGCCGTCACTCGTGCCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCGAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTGAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAAGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439817" ref_strand="+" ref_description="SGN-E439817 [cSTA-13-L17]">
      <seq>ctcgccggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgccttgataaacttggaggtgccttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaatgggatcccatatctcaacacttatgatggaagaacaatccgctaccctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119787" stop="122178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120087" g_stop="120140" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="134" r_length="80" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="315" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="413" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121878" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="505" r_length="92" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E439817" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120087" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATG-CTTGATAAACTTGGAGGTG-CTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGA</genome_strand>
        <mrna_strand>CTCGCCGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCCTTGATAAACTTGGAGGTGCCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAATGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438549" ref_strand="+" ref_description="SGN-E438549 [cSTA-8-L5]">
      <seq>ctcgccggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119787" stop="122160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120087" g_stop="120140" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="132" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="313" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="411" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121860" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="485" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E438549" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120087" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAG</genome_strand>
        <mrna_strand>CTCGCCGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473271" ref_strand="+" ref_description="SGN-E473271 [cSTB-31-D18]">
      <seq>ctcgccggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119787" stop="122123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120087" g_stop="120140" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="132" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="313" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="411" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121823" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="448" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E473271" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120087" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGAC</genome_strand>
        <mrna_strand>CTCGCCGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263326" ref_strand="+" ref_description="SGN-E263326 [cLEG-62-K20]">
      <seq>tcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtaaaaacangggacgtgttggaattcttaagaatagagagaagcacaagggtagctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115888" stop="122342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120088" g_stop="120140" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="131" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="312" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="410" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122042" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="666" r_length="256" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E263326" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120088" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTG</genome_strand>
        <mrna_strand>TCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAAAAACANGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258678" ref_strand="+" ref_description="SGN-E258678 [cLEG-50-F5]">
      <seq>tcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115888" stop="122279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120088" g_stop="120140" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="131" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="312" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="410" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121979" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="603" r_length="193" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E258678" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120088" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTG</genome_strand>
        <mrna_strand>TCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302257" ref_strand="+" ref_description="SGN-E302257 [cLEW-19-F1]">
      <seq>tcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115888" stop="122155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120088" g_stop="120140" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="131" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="312" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="410" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121855" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="479" r_length="69" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E302257" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120088" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGAT</genome_strand>
        <mrna_strand>TCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286148" ref_strand="+" ref_description="SGN-E286148 [cLES-13-F12]">
      <seq>tcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttggtactattccaaagacaaatgagagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115888" stop="121933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120088" g_stop="120140" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="131" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="312" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121634" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="347" r_length="35" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E286148" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120088" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTC</genome_strand>
        <mrna_strand>TCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGGTACTATTCCAAAGACAAATGAGAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266999" ref_strand="+" ref_description="SGN-E266999 [cLEI-7-L6]">
      <seq>cgccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119789" stop="122217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120089" g_stop="120140" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="130" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="311" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="409" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121917" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="540" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E266999" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120089" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTT</genome_strand>
        <mrna_strand>CGCCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304099" ref_strand="+" ref_description="SGN-E304099 [cLEX-6-N5]">
      <seq>cgccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagactggacggacaacacttaccctgctggtttcatggatgttgttactattccaaagacaaatgacagtttccgacttctttatgacactaagggccgggtccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagcttggacagaaggggatcccatatctcaacacttatgatggaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119789" stop="122163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120089" g_stop="120140" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="130" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="311" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="409" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121863" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="486" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E304099" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120089" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAAC</genome_strand>
        <mrna_strand>CGCCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGACTGGACGGACAACACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGACAGTTTCCGACTTCTTTATGACACTAAGGGCCGGGTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGCTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287279" ref_strand="+" ref_description="SGN-E287279 [cLES-15-A14]">
      <seq>cgccggttgccgtctctcgccgcagttaatcagtcggaaaacctgctaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115889" stop="122019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120089" g_stop="120140" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.827"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="130" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="311" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="409" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121808" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="431" r_length="22" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E287279" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120089" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGAT</genome_strand>
        <mrna_strand>CGCCGGTTGCCGTCTCTCGCCGCAGTTAATCAGTCGGAAAACCTGCTAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440190" ref_strand="+" ref_description="SGN-E440190 [cSTA-15-H22]">
      <seq>cgccggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119789" stop="121951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120089" g_stop="120140" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="130" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="311" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121651" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="363" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E440190" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120089" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACAC</genome_strand>
        <mrna_strand>CGCCGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730836" ref_strand="+" ref_description="SGN-E730836 [LA25BD07]">
      <seq>ccctgtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaagctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115891" stop="122527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120090" g_stop="120140" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122227" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="848" r_length="440" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E730836" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120090" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCT</genome_strand>
        <mrna_strand>CCCTGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAAGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTT-AAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261871" ref_strand="+" ref_description="SGN-E261871 [cLEG-61-P17]">
      <seq>gccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgntcactcttggcaagggtagaaagccatgggtgtctctacctaagggtaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115890" stop="122453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120090" g_stop="120140" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122153" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="775" r_length="367" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E261871" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120090" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAG</genome_strand>
        <mrna_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGNTCACTCTTGGCAAGGGTAGAAAGCCATGGGTGTCTCTACCTAAGGGTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345340" ref_strand="+" ref_description="SGN-E345340 [cTOF-13-E19]">
      <seq>gccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctgnggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119790" stop="122425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120090" g_stop="120140" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122125" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="747" r_length="339" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E345340" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120090" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAG</genome_strand>
        <mrna_strand>GCCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGNGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579372" ref_strand="+" ref_description="SGN-E579372 [87355]">
      <seq>gcacgagggtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119801" stop="122378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120090" g_stop="120140" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.843"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="127" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="308" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="406" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122078" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="698" r_length="292" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E579372" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120090" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGT</genome_strand>
        <mrna_strand>GCACG-AG-GGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314844" ref_strand="+" ref_description="SGN-E314844 [cTOA-20-J16]">
      <seq>gccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115890" stop="122279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120090" g_stop="120140" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121979" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="601" r_length="193" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E314844" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120090" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTG</genome_strand>
        <mrna_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468400" ref_strand="+" ref_description="SGN-E468400 [cSTB-3-F23]">
      <seq>gccggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119790" stop="122271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120090" g_stop="120140" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121971" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="593" r_length="185" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E468400" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120090" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTAT</genome_strand>
        <mrna_strand>GCCGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276078" ref_strand="+" ref_description="SGN-E276078 [cLEN-12-B5]">
      <seq>gccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115890" stop="122253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120090" g_stop="120140" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121953" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="575" r_length="167" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E276078" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120090" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGA</genome_strand>
        <mrna_strand>GCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288725" ref_strand="+" ref_description="SGN-E288725 [cLES-8-P9]">
      <seq>gccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaagggatcccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115890" stop="122140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120090" g_stop="120140" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121840" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="462" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E288725" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120090" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATAT</genome_strand>
        <mrna_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAAGGGATCCCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286682" ref_strand="+" ref_description="SGN-E286682 [cLES-14-I13]">
      <seq>gccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115890" stop="122114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120090" g_stop="120140" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121814" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="436" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E286682" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120090" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGC</genome_strand>
        <mrna_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445552" ref_strand="+" ref_description="SGN-E445552 [cSTA-45-P18]">
      <seq>gccggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119790" stop="122009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120090" g_stop="120140" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121798" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="420" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E445552" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120090" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGT</genome_strand>
        <mrna_strand>GCCGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255993" ref_strand="+" ref_description="SGN-E255993 [cLEG-35-M24]">
      <seq>gccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115890" stop="121986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120090" g_stop="120140" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121686" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="397" r_length="87" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E255993" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120090" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATG</genome_strand>
        <mrna_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367493" ref_strand="+" ref_description="SGN-E367493 [cLPT-7-M21]">
      <seq>gccggtagccgtcactcgccgcagctaatcagtcggaaaactgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaaaacgaatgagagcttccgacttcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115890" stop="121945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120090" g_stop="120140" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121645" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="356" r_length="46" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E367493" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120090" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTA</genome_strand>
        <mrna_strand>GCCGGTAGCCGTCACTCGCCGCAGCTAATCAGTCGGAAAACTGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAAACGAATGAGAGCTTCCGACTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328709" ref_strand="+" ref_description="SGN-E328709 [cTOC-23-I12]">
      <seq>ccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctgnggcatgagtttgctacccgtttgggaaatgtgttcactcttgggcagggtagtaagccatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119791" stop="122433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120091" g_stop="120140" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="128" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="309" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="407" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122133" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="754" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E328709" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120091" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGT</genome_strand>
        <mrna_strand>CCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGNGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGGCAGGGTAGTAAGCCATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452354" ref_strand="+" ref_description="SGN-E452354 [cSTS-16-D21]">
      <seq>ccggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagaacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttacctggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119791" stop="122392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120091" g_stop="120140" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="128" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="310" r_length="182" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122092" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="715" r_length="307" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E452354" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120091" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAG-ACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTA-CTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTG</genome_strand>
        <mrna_strand>CCGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGAACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACCTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313787" ref_strand="+" ref_description="SGN-E313787 [cTOA-17-H8]">
      <seq>ccggtagccgttactcgctttttctaatcagtcggaaaaccgccaaaatgggaagagggtggaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagacacaggggacgtgttggaattcttaagaacagggagaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115913" stop="122328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120091" g_stop="120140" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.840"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="128" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="309" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="407" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122028" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="649" r_length="242" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E313787" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120091" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCA</genome_strand>
        <mrna_strand>CCGGTAGCCGTTACTCGCTTTTTCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGAGGGTGGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGACACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304206" ref_strand="+" ref_description="SGN-E304206 [cLEX-6-O15]">
      <seq>ccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115891" stop="122184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120091" g_stop="120140" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="128" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="309" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="407" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121884" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="505" r_length="98" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E304206" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120091" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCT</genome_strand>
        <mrna_strand>CCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336788" ref_strand="+" ref_description="SGN-E336788 [cTOE-5-O5]">
      <seq>ccggttgccgtcactctccgcagttaatcagtcggaaaaccgccaaaatggcaagaaggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115891" stop="122155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120091" g_stop="120140" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="128" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="309" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="407" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121855" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="476" r_length="69" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E336788" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120091" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGAT</genome_strand>
        <mrna_strand>CCGGTTGCCGTCACTCTCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAAGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250099" ref_strand="+" ref_description="SGN-E250099 [cLEG-4-M6]">
      <seq>ccggttgccgttatctcgccgcagttaatcagtcggaaaaccggcaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaancattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcancnccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115891" stop="121925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120091" g_stop="120140" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.820"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121625" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="336" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E250099" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120091" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTAGCCATCA-CTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAAT</genome_strand>
        <mrna_strand>CCGGTTGCCGTTATCTCGCCGCAGTTAATCAGTCGGAAAACCGGCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAANCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCANCNCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591732" ref_strand="+" ref_description="SGN-E591732 [45451]">
      <seq>cggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119792" stop="122342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120092" g_stop="120140" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="127" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="308" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="406" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122042" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="662" r_length="256" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E591732" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120092" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTG</genome_strand>
        <mrna_strand>CGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209270" ref_strand="+" ref_description="SGN-E209270 [cLEC-53-M10]">
      <seq>cggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115892" stop="122007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120092" g_stop="120140" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="127" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="308" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="406" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121795" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="415" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E209270" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120092" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTT</genome_strand>
        <mrna_strand>CGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461088" ref_strand="+" ref_description="SGN-E461088 [cPRO-34-C4]">
      <seq>ggtagccgtcactcgcggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaaggggatcccatatctcaacacttacgatggaagaacaatccgctaccccgatccccttatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctgnggcatgagtttgctacccgttttgggaaatgtgttcactctttggtaaaggtagtaagccatgggtgtctctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119793" stop="122442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120093" g_stop="120140" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="126" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="307" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="405" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122142" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="763" r_length="358" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E461088" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120093" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCG-TTTGGGAAATGTGTTCACTC-TTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACC</genome_strand>
        <mrna_strand>GGTAGCCGTCACTCGCGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTACGATGGAAGAACAATCCGCTACCCCGATCCCCTTATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGNGGCATGAGTTTGCTACCCGTTTTGGGAAATGTGTTCACTCTTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708014" ref_strand="+" ref_description="SGN-E708014 [FA34CD11]">
      <seq>cttttcgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagattagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgaattcgctacccgttttggggaatgtgttcactcttggtaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="122418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120094" g_stop="120140" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.809"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.81"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="306" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="404" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122118" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="737" r_length="333" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E708014" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120094" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCG-TTTGGGAAATGTGTTCACTCTTGGCAAGGG</genome_strand>
        <mrna_strand>CTTTTCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGATTAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAATTCGCTACCCGTTTTGGGGAATGTGTTCACTCTTGGTAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347078" ref_strand="+" ref_description="SGN-E347078 [cTOF-25-D20]">
      <seq>gtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115894" stop="122290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120094" g_stop="120140" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.91"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="306" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="404" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121990" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="608" r_length="204" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E347078" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120094" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAAC</genome_strand>
        <mrna_strand>GTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271507" ref_strand="+" ref_description="SGN-E271507 [cLEM-23-G11]">
      <seq>gtagacgtcactctcggcagctaatctgtcggaaaatcgcccaaatgagccaagagggttgaagaaacatttaaagaggcctcaatgccgccctaagcattggatgccttgataaacctcggaggtgccttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaaccaggttgaaatatgccgttgaccgtacccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggaccgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctaccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119794" stop="122264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120094" g_stop="120140" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120976" i_length="836">
            <donor d_prob="0.998" d_score="0.89"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120977" g_stop="121056" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="133" r_length="86" r_score="0.812"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.76"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="318" r_length="185" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="418" r_length="100" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121964" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="596" r_length="178" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E271507" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120094" e_stop="120140"/>
          <exon e_start="120977" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGG-CTCAATG-CG-CCTAAGCATTGGATG-CTTGATAAACTT-GGAGGTG-CTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAA-CAGGTTGAAATATG-CTTTGA-CTTA-CCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGA-TGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCT-CCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATG</genome_strand>
        <mrna_strand>GTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAATCGCCCAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAAGAGGGTTGAAGAAACATTTAAAGAGGCCTCAATGCCGCCCTAAGCATTGGATGCCTTGATAAACCTCGGAGGTGCCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACCAGGTTGAAATATGCCGTTGACCGTACCCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACCGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311066" ref_strand="+" ref_description="SGN-E311066 [cLEZ-17-H20]">
      <seq>gtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115894" stop="122209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120094" g_stop="120140" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.91"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="306" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="404" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121909" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="527" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E311066" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120094" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAG</genome_strand>
        <mrna_strand>GTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266890" ref_strand="+" ref_description="SGN-E266890 [cLEI-7-G7]">
      <seq>gtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaagaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttatgacggacaaaacttaccctgctggtttcatggatgttgctactattccaaagacaaatgagagtttccgacttctttatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119794" stop="121951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120094" g_stop="120140" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="306" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121651" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="358" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E266890" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120094" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACAC</genome_strand>
        <mrna_strand>GTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAAGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTATGACGGACAAAACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGCTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371059" ref_strand="+" ref_description="SGN-E371059 [TUS-29-H9]">
      <seq>tagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggatttcttaagaatagagagaagcacaagggtagctatgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119795" stop="122396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120095" g_stop="120140" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="124" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="305" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="403" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122096" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="713" r_length="310" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E371059" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120095" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAA</genome_strand>
        <mrna_strand>TAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGATTTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTATGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319911" ref_strand="+" ref_description="SGN-E319911 [cTOB-12-L17]">
      <seq>tagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119795" stop="122215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120095" g_stop="120140" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="124" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="305" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="403" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121915" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="532" r_length="129" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E319911" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120095" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGAC</genome_strand>
        <mrna_strand>TAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266017" ref_strand="+" ref_description="SGN-E266017 [cLEI-6-H22]">
      <seq>tagccatcacccgcgggggctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaagggatcccatatctcaacactaatgatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119795" stop="122160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120095" g_stop="120140" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="124" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="305" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="403" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121860" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="477" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E266017" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120095" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAG</genome_strand>
        <mrna_strand>TAGCCATCACCCGCGGGGGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAAGGGATCCCATATCTCAACACTAATGATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269806" ref_strand="+" ref_description="SGN-E269806 [cLEM-17-M19]">
      <seq>tagccatcacccgcggcagctaatctggcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagcctttttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaacacaaatgagagtttccgacttctttatgacactaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119795" stop="121956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120095" g_stop="120140" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="124" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="305" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121656" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="362" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E269806" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120095" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGG</genome_strand>
        <mrna_strand>TAGCCATCACCCGCGGCAGCTAATCTGGCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTTTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAACACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444030" ref_strand="+" ref_description="SGN-E444030 [cSTA-41-I17]">
      <seq>tagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119795" stop="121951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120095" g_stop="120140" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="124" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="305" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121651" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="357" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E444030" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120095" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACAC</genome_strand>
        <mrna_strand>TAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280432" ref_strand="+" ref_description="SGN-E280432 [cLER-1-H2]">
      <seq>tagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgggaggtcatttctatcttgatgcaacgcccagttatggttgatgggaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119795" stop="121597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120095" g_stop="120140" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="124" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121297" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="271" r_length="147" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E280432" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120095" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTT</genome_strand>
        <mrna_strand>TAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGGGAGGTCATTTCTATCTTGATGCAACGCCCAGTTATGGTTGATGGGAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554506" ref_strand="+" ref_description="SGN-E554506 [cTSC-4-I16]">
      <seq>agacatgactctcggcagctaatcagtcggaaaaccgccaaaatggccagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactccgaagtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaaaggtcggttccgtctacactcactcagagatgaagaagccaagttctaactttgcaaggttcgatcactgcactttggacagaaggatatcccatatctcaacacgtatgatggaagaacaagccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattctaataagattgctgacttcatcaagtttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaagattccctggggtatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggcactaagccatgggtgtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119796" stop="122439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120096" g_stop="120140" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.91"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="304" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="402" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122139" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="755" r_length="353" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E554506" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120096" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCT</genome_strand>
        <mrna_strand>AGACATGACTCTCGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCCGAAGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAAGGTCGGTTCCGTCTACACTCACTCAGAGATGAAGAAGCCAAG.........................................................................................TTCTAACTTTGCAAGGTTCGATCACTGCACTTTGGACAGAAGGATATCCCATATCTCAACACGTATGATGGAAGAACAAGCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCTAATAAGATTGCTGACTTCATCAAGTTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGATTCCCTGGGGTATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGCACTAAGCCATGGGTGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273259" ref_strand="+" ref_description="SGN-E273259 [cLEM-24-H1]">
      <seq>agccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119796" stop="122265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120096" g_stop="120140" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="304" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="402" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121965" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="581" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E273259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120096" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGT</genome_strand>
        <mrna_strand>AGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728741" ref_strand="+" ref_description="SGN-E728741 [LA18DC03]">
      <seq>ggcacgagggccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcgttggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="122217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120097" g_stop="120140" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.773"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.77"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="121" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="302" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="400" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121917" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="531" r_length="131" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E728741" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120097" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTT</genome_strand>
        <mrna_strand>GGCA-CGAGGGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCGTTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561316" ref_strand="+" ref_description="SGN-E561316 [17288]">
      <seq>ccgtcactcgtggcagctaatcagtcggaaaaccgncaaaacggcaagaggtttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115899" stop="122411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120098" g_stop="120140" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="121" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="302" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="400" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122111" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="725" r_length="325" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E561316" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120098" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTG</genome_strand>
        <mrna_strand>CCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGNCAAAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGTTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450717" ref_strand="+" ref_description="SGN-E450717 [cSTS-10-O11]">
      <seq>cgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115899" stop="122290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120099" g_stop="120140" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="120" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="301" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="399" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121990" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="603" r_length="204" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E450717" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120099" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAAC</genome_strand>
        <mrna_strand>CGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269490" ref_strand="+" ref_description="SGN-E269490 [cLEM-2-N13]">
      <seq>catcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119799" stop="122215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120099" g_stop="120140" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="120" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="301" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="399" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121915" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="528" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E269490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120099" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGAC</genome_strand>
        <mrna_strand>CATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700791" ref_strand="+" ref_description="SGN-E700791 [FA14AF12]">
      <seq>gttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgctttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagataccaatctcaattttgaatgtgaatttagcaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgagtttaaaatcattcatttgctttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115900" stop="122583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120100" g_stop="120140" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="118" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="299" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="397" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122344" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="951" r_length="554" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1008" polyA_stop="1018"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E700791" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>956</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120100" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTAC</genome_strand>
        <mrna_strand>GTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGC-TTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGA--GATACCAATCTCAATTTTGAATG-TGAATTT-AGCAATTTTGTATTTGGTACCGTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453203" ref_strand="+" ref_description="SGN-E453203 [cSTS-19-O19]">
      <seq>gtcactcgcggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaaggggatcccatatctcaacacttacgatggaagaacaatccgctaccccgatccccttatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacaggggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagaacagtcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119801" stop="122403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120100" g_stop="120140" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.95"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="300" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="398" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122103" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="716" r_length="318" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E453203" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120100" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACA-GGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTT</genome_strand>
        <mrna_strand>GTCACTCGCGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTACGATGGAAGAACAATCCGCTACCCCGATCCCCTTATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGAACAGTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342603" ref_strand="+" ref_description="SGN-E342603 [cTOF-7-G10]">
      <seq>gtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgtttgaattcttaagacagggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119801" stop="122322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120100" g_stop="120140" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.95"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="300" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="398" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122024" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="635" r_length="237" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E342603" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120100" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGA</genome_strand>
        <mrna_strand>GTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTTGAATTCTTAAG-ACAGGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341583" ref_strand="+" ref_description="SGN-E341583 [cTOE-23-J10]">
      <seq>atcacccgcggcttctaatctgtcggaaaaccgccaaaatggcgagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119800" stop="122310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120100" g_stop="120140" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="300" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="398" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122010" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="622" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E341583" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120100" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCT</genome_strand>
        <mrna_strand>ATCACCCGCGGCTTCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558299" ref_strand="+" ref_description="SGN-E558299 [17618]">
      <seq>gtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttggatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgtaccctgatcccctcatcaaggccaatgacactatcaagcttgacttaattccaataagattgttgacttcatcaaatttgatgttggaaatgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119801" stop="122267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120100" g_stop="120140" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="301" r_length="182" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="399" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121967" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="578" r_length="179" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E558299" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120100" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTT-GATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGG</genome_strand>
        <mrna_strand>GTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCG-TACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTA-ATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469697" ref_strand="+" ref_description="SGN-E469697 [cSTB-13-B24]">
      <seq>gtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgactttcatcaaattgatgttggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119801" stop="122263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120100" g_stop="120140" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="300" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="398" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121963" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="575" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E469697" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120100" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGAC-TTCATCAAATTTGATGTTGGAAAT</genome_strand>
        <mrna_strand>GTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTTCATCAAA-TTGATGTTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416946" ref_strand="+" ref_description="SGN-E416946 [STM-24-I17]">
      <seq>gtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119801" stop="122263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120100" g_stop="120140" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="300" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="398" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121963" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="575" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E416946" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120100" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAAT</genome_strand>
        <mrna_strand>GTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326166" ref_strand="+" ref_description="SGN-E326166 [cTOC-16-G23]">
      <seq>tcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctgnggcatgagttcgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115901" stop="122384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120101" g_stop="120140" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="118" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="299" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="397" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122084" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="695" r_length="298" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E326166" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120101" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTA</genome_strand>
        <mrna_strand>TCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGNGGCATGAGTTCGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248437" ref_strand="+" ref_description="SGN-E248437 [cLEF-59-D23]">
      <seq>tcactcgtggcagctaatcagtcggaaaacccgcggaaaggggggagggttgaagaaaaatttgaagagggtcaatgccgccctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaaccaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115901" stop="122188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120101" g_stop="120140" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.825"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="0.996" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="120" r_length="80" r_score="0.885"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.90"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="302" r_length="182" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="400" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121888" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="502" r_length="102" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E248437" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120101" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATG-CG-CCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAA-CAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATC</genome_strand>
        <mrna_strand>TCACTCGTGGCAGCTAATCAGTCGGAAAACCCGCGGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGGGTTGAAGAAAAATTTGAAGAGGGTCAATGCCGCCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACCAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336578" ref_strand="+" ref_description="SGN-E336578 [cTOE-4-C6]">
      <seq>ttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtnnntttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaagggatcccatatctcaacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115900" stop="122150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120101" g_stop="120140" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="118" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="299" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="397" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121850" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="461" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E336578" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120101" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTT</genome_strand>
        <mrna_strand>TTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTNNNTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAAGGGATCCCATATCTCAACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693078" ref_strand="+" ref_description="SGN-E693078 [LH_Ea10G04]">
      <seq>ttctcgccgcagctaatcagtcggaaaactgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgactactttatgacactaagggtcgcttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaatacttatgatggaagaacaatccgctaccctgaccccctcatcaaggctaatgacaccatcaagcttgacttagattccaacaagattgttgacttcatcaaatttgatgttggaaatgtcgtcatggttactggtggtagaaataggggacgtgttggaattcttaagaatagggagaagcacaagggtagctttgagacagttcacattcaagactccctgggccacgagtttgctactcgtttgggccatgtgttcactcttggcaagggtagtaagccatgggtgtctcctacctaagggtaaaggtatcaagttatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115904" stop="122469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120102" g_stop="120140" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="117" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="298" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="396" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122169" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="780" r_length="384" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E693078" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120102" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCT-CTACCTAAGGGGAAAGGTATCAAGTTATCTAT</genome_strand>
        <mrna_strand>TTCTCGCCGCAGCTAATCAGTCGGAAAACTGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTACTTTATGACACTAAGGGTCGCTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGACCCCCTCATCAAGGCTAATGACACCATCAAGCTTGACTTAGATTCCAACAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTCGTCATGGTTACTGGTGGTAGAAATAGGGGACGTGTTGGAATTCTTAAGAATAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGCCACGAGTTTGCTACTCGTTTGGGCCATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCCTACCTAAGGGTAAAGGTATCAAGTTATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592298" ref_strand="+" ref_description="SGN-E592298 [46029]">
      <seq>cactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaggtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119802" stop="122458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120102" g_stop="120140" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="117" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="298" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="396" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122158" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="767" r_length="371" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E592298" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120102" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATC</genome_strand>
        <mrna_strand>CACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAA-GGGTAAGGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E575732" ref_strand="+" ref_description="SGN-E575732 [35403]">
      <seq>ctcgtggcagctaatcagtctggaaaaccgccaaaatggcaagagggttgcaaagaaacatttgagagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagcaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatggtgtgtctctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119804" stop="122441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120104" g_stop="120140" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="119" r_length="81" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="300" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="398" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122141" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="755" r_length="357" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E575732" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120104" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCGGCAGCTAATCTGTC-GGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTG--AAGAAACATTTGA-AGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAG-AATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGG-GTGTCTCTAC</genome_strand>
        <mrna_strand>CTCGTGGCAGCTAATCAGTCTGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGCAAAGAAACATTTGAGAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGCAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGTGTGTCTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305936" ref_strand="+" ref_description="SGN-E305936 [cLEY-17-P6]">
      <seq>ctcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115904" stop="122271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120104" g_stop="120140" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="115" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="296" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="394" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121971" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="579" r_length="185" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E305936" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120104" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTAT</genome_strand>
        <mrna_strand>CTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341670" ref_strand="+" ref_description="SGN-E341670 [cTOE-23-N4]">
      <seq>ctctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119804" stop="122264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120104" g_stop="120140" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="115" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="296" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="394" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121964" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="572" r_length="178" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E341670" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120104" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATG</genome_strand>
        <mrna_strand>CTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213615" ref_strand="+" ref_description="SGN-E213615 [cLEC-76-M17]">
      <seq>tcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115905" stop="122387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120105" g_stop="120140" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="114" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="295" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="393" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122087" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="694" r_length="301" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E213615" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120105" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCC</genome_strand>
        <mrna_strand>TCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285017" ref_strand="+" ref_description="SGN-E285017 [cLER-19-B15]">
      <seq>tcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgagaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcagactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115905" stop="122183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120105" g_stop="120140" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="114" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="295" r_length="181" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="393" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121883" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="490" r_length="97" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E285017" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120105" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCC</genome_strand>
        <mrna_strand>TCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGAGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAGACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700312" ref_strand="+" ref_description="SGN-E700312 [FA12DA11]">
      <seq>gccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctattattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgaacttgagattaattaatagatttggtcatttttctctttgtttagagggatgccggtcttattttttgtgttgcaattcaacatctgtgtacttggaactattttacatacctttttttgtccagaaaaaaaaaagactcaattgagatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120107" g_stop="120140" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="112" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="293" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="391" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122388" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="991" r_length="600" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="992" polyA_stop="1005"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E700312" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>993</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120107" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>GCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTA-ATTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGGTCTTATTTTT-TGTGTTGCAATTCAACATCTGTGTACTTGGAACTATTTTACATACCTTTTTTTGTCCAGAAAAAAAAAAGACTCAATTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705872" ref_strand="+" ref_description="SGN-E705872 [FA28BE08]">
      <seq>gccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgctaaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115907" stop="122580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120107" g_stop="120140" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="112" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="293" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="391" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122280" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="885" r_length="494" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E705872" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120107" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTA</genome_strand>
        <mrna_strand>GCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTAAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332333" ref_strand="+" ref_description="SGN-E332333 [cTOD-17-D10]">
      <seq>ccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115908" stop="122385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120108" g_stop="120140" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="111" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="292" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="390" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122086" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="690" r_length="300" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E332333" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120108" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACC</genome_strand>
        <mrna_strand>CCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728902" ref_strand="+" ref_description="SGN-E728902 [LA19BC12]">
      <seq>ccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttatattcgaacaagattgttgacttcatcaagtatgatgttggaaatgtggtcatggttactggagggagaaacagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115908" stop="122295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120108" g_stop="120140" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="111" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="292" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="390" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121995" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="599" r_length="209" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E728902" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120108" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGG</genome_strand>
        <mrna_strand>CCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTATATTCGAACAAGATTGTTGACTTCATCAAGTATGATGTTGGAAATGTGGTCATGGTTACTGGAGGGAGAAACAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256624" ref_strand="+" ref_description="SGN-E256624 [cLEG-38-J4]">
      <seq>ccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatgggtaagaacagctccattagattgttttttcatttcataatctttagatttttgttctccttatttctgtgctgcttaagtttgttttcttagtgattcatctatacacatggtttcacagttccgaagacaattgttgatcagattgtctacaagttttttcatcaaaaaccattgtctcgtgtcctttttcttctttgttctcttgttgctatgtttgttgaattacttgataaattggtaatgctgttattttgtttgtgtagatgttgttactattccaaagacgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115908" stop="121926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120108" g_stop="120140" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="111" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121626" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="584" r_length="473" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E256624" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120108" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAG-ACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTT-TTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATG</genome_strand>
        <mrna_strand>CCGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAAGTTTGTTTTCTTAGTGATTCATC--TATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGTTTTTTCATCAAAAACCA--TTGTCTCGTGTCCT-TTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTACTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201593" ref_strand="+" ref_description="SGN-E201593 [cLEC-11-M9]">
      <seq>ggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119809" stop="122266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120109" g_stop="120140" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121966" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="569" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E201593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120109" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTG</genome_strand>
        <mrna_strand>GGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476861" ref_strand="+" ref_description="SGN-E476861 [cSTB-46-M3]">
      <seq>ggcagctattcaatcggaaaaccgccaaaatggccagagggttgaagaaacatttgaagaggctcaatgcgcctaatcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttatggtccacacaaatcaaaggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgagaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacttaccctgctggtttcatggatgttgttacgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="119809" stop="121633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120109" g_stop="120140" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121614" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="306" r_length="15" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E476861" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120109" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTC</genome_strand>
        <mrna_strand>GGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAATCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTATGGTCCACACAAATCAAAGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGAGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459087" ref_strand="+" ref_description="SGN-E459087 [cPRO-33-E16]">
      <seq>cagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115911" stop="122473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120111" g_stop="120140" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="108" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="289" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="387" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122173" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="774" r_length="387" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E459087" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120111" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATT</genome_strand>
        <mrna_strand>CAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611636" ref_strand="+" ref_description="SGN-E611636 [61390]">
      <seq>attcaatcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="122010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120116" g_stop="120140" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.840"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="103" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="284" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.924" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="382" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121796" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="392" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E611636" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120116" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTT</genome_strand>
        <mrna_strand>ATTCAATCGGGAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG............................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446302" ref_strand="+" ref_description="SGN-E446302 [cSTA-20-L17]">
      <seq>attcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcatctggtccacacaaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttacgattccaaagacgaatgagagcttccgacttctttatgacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115918" stop="121952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120116" g_stop="120140" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="103" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="284" r_length="181" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121652" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="337" r_length="53" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E446302" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120116" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACT</genome_strand>
        <mrna_strand>ATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCATCTGGTCCACACAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306030" ref_strand="+" ref_description="SGN-E306030 [cLEY-17-P18]">
      <seq>cggaaaaccgcccaaatggcaggagggtggaagaaacatttgaagaggctcaatgcgcctaaacattggatgcttgataaacttggaggggcttttgctcccaagccttcctctggtgcacataaatcaagggaatgtttgccattggttattatcctgaggaacaagttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaatggtcggttccgtctccactcactcatagatgaggaagccaagttcaaactttgtaaggttcgatcagggcaatttggacagaaagggatcccatatctcaacacttatgatggaagaacaatcccgtaccctgatcccctcatcaaggccaatgacactatcaagcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116687" stop="122215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120123" g_stop="120140" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="96" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="277" r_length="181" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="375" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121915" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="504" r_length="129" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E306030" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120123" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGAC</genome_strand>
        <mrna_strand>CGGAAAACCGCCCAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGGGTGGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAACATTGGATGCTTGATAAACTTGGAGGGGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTGCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAAGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAATGGTCGGTTCCGTCTCCACTCACTCATAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGGGCAATTTGGACAGAAAGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCCGTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337692" ref_strand="+" ref_description="SGN-E337692 [cTOE-17-P17]">
      <seq>ggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaacggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="115924" stop="122202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120124" g_stop="120140" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="95" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="276" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="374" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121902" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="490" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E337692" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120124" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACAC</genome_strand>
        <mrna_strand>GGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAACGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537443" ref_strand="+" ref_description="SGN-E537443 [TUS-56-A18]">
      <seq>ccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaagatggctgctcaatcagctacaactgcttaataatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116689" stop="122528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120133" g_stop="120140" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="86" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="267" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="365" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="122228" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="807" r_length="442" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E537443" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120133" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTT</genome_strand>
        <mrna_strand>CCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAAGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270181" ref_strand="+" ref_description="SGN-E270181 [cLEM-1-G15]">
      <seq>gcaaaatggctttagggttgaagaaacatttaaagaggctcagatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116704" stop="122189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120133" g_stop="120140" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="87" r_length="79" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="268" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="366" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121889" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="469" r_length="103" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E270181" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120133" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCA-ATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCA</genome_strand>
        <mrna_strand>GCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGGGTTGAAGAAACATTTAAAGAGGCTCAGATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266327" ref_strand="+" ref_description="SGN-E266327 [cLEI-3-A21]">
      <seq>caaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcgggtccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116690" stop="122185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120134" g_stop="120140" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="85" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="266" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="364" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121787" g_stop="121885" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="463" r_length="99" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E266327" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120134" e_stop="120140"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTC</genome_strand>
        <mrna_strand>CAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGGTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324489" ref_strand="+" ref_description="SGN-E324489 [cTOC-9-A17]">
      <seq>tggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaagtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatagttgcactattccaaaaacaaatgagagtttccgacttctttatgacactaaaggccggttccgtctccactcactcagagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116698" stop="121986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120906" g_stop="120907" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120908" i_stop="120978" i_length="71">
            <donor d_prob="0.270" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120979" g_stop="121056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="80" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="261" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121600" g_stop="121686" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="348" r_length="87" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E324489" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120906" e_stop="120907"/>
          <exon e_start="120979" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGAT-GTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATG</genome_strand>
        <mrna_strand>TG.......................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAAGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATAGTTG-CACTATTCCAAAAACAAATGAGAGTTTCCGACTTCTTTATGACACTAAAGGCCGGTTCCGTCTCCACTCACTCAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567562" ref_strand="+" ref_description="SGN-E567562 [11707]">
      <seq>ggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaaggggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagcttgacttagattccaataagattgttgacttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116698" stop="122245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120978" g_stop="121056" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="261" r_length="182" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="359" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121787" g_stop="121945" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="518" r_length="159" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E567562" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120978" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAA-GGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATC</genome_strand>
        <mrna_strand>GGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326441" ref_strand="+" ref_description="SGN-E326441 [cTOC-14-B20]">
      <seq>ggcaagagggctgaacaaacatttgaagaggctcaatgcgcctaatcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaaaggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgagaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttatggacagataagacttaccctgctggtttcatggatgttgtcactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcatagatgaggaagccaagttcaaactttgtaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116698" stop="122009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120978" g_stop="121056" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="261" r_length="182" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="359" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121787" g_stop="121803" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="376" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E326441" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120978" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTA-GGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGT</genome_strand>
        <mrna_strand>GGCAAGAGGGCTGAACAAACATTTGAAGAGGCTCAATGCGCCTAATCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAAGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGAGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTATGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTCACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCATAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719190" ref_strand="+" ref_description="SGN-E719190 [FC07AB06]">
      <seq>gagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataaaattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116703" stop="122417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120983" g_stop="121056" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="255" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="353" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121787" g_stop="122117" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="684" r_length="331" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E719190" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120983" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGG</genome_strand>
        <mrna_strand>GAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAAATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242662" ref_strand="+" ref_description="SGN-E242662 [cLED-30-F19]">
      <seq>ttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116708" stop="122319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120988" g_stop="121056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="250" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="348" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121787" g_stop="122019" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="581" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E242662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120988" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAG</genome_strand>
        <mrna_strand>TTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244688" ref_strand="+" ref_description="SGN-E244688 [cLED-38-E22]">
      <seq>ttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgggaggtcatttctatcttgattcaacgccaagttatggttgatgggaaagttatgacggacaagacttaccctgctggtttcatggatgtgtgtactattccaaagacaaatgagagtttccgacttatttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116708" stop="122114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120988" g_stop="121056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="250" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="348" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121787" g_stop="121814" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="376" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E244688" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120988" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGC</genome_strand>
        <mrna_strand>TTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGGGAGGTCATTTCTATCTTGATTCAACGCCAAGTTATGGTTGATGGGAAAGTTATGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTGTGTACTATTCCAAAGACAAATGAGAGTTTCCGACTTATTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710491" ref_strand="+" ref_description="SGN-E710491 [FA55CD07]">
      <seq>aaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggtaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaagatggctgctcagtcagctacagctgcttaaaatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116714" stop="122527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120994" g_stop="121056" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="244" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="342" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121787" g_stop="122223" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="779" r_length="437" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E710491" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120994" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAA</genome_strand>
        <mrna_strand>AAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGTAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAAGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341721" ref_strand="+" ref_description="SGN-E341721 [cTOF-9-L23]">
      <seq>ctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcccaagggtagctttgagacagttcacattcaggactccctgtggcacgagtttgctactcgtctgggcaatgtgttcactcttggcacgggtagtaagccatggggtgtctctacctaagggtaaaggtatcaagttatctatcattgaacaggctcgcaagaggatggctgctcagtcagctacagctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116729" stop="122519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121009" g_stop="121056" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="229" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="327" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121787" g_stop="122219" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="761" r_length="434" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E341721" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121009" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCAT-GGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTT</genome_strand>
        <mrna_strand>CTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCCCAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGTGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCACGGGTAGTAAGCCATGGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAACAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255625" ref_strand="+" ref_description="SGN-E255625 [cLEG-36-F7]">
      <seq>tgcgcctaagcattggatgcttgattaacttggaagtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaagttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaaaggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaagccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116734" stop="122307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121014" g_stop="121056" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.95"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="224" r_length="181" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="322" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121787" g_stop="122007" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="543" r_length="221" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E255625" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121014" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAAT</genome_strand>
        <mrna_strand>TGCGCCTAAGCATTGGATGCTTGATTAACTTGGAAGTGCTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAAGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAAGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAAGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570760" ref_strand="+" ref_description="SGN-E570760 [15395]">
      <seq>gcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacaggaagggaatcccatatctcaacacttatgatggaagaacaatccgtaccctgatcccctcatcaagggccaatgacaccatcaagcttgacttagattccaataagattgtttgacttcatcaaatttgatgttggaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116735" stop="122265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121015" g_stop="121056" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="223" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="321" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121787" g_stop="121965" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="502" r_length="181" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E570760" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121015" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACA-GAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAA-GGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTG-TTGACTTCATCAAATTTGATGTTGGAAATGT</genome_strand>
        <mrna_strand>GCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCG-TACCCTGATCCCCTCATCAAGGGCCAATGACACCATCAAGCTTGACTTAGATTCCAATAAGATTGTTTGACTTCATCAAATTTGATGTTGGAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738580" ref_strand="+" ref_description="SGN-E738580 [LC14AG10]">
      <seq>cgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctncatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccacctcttatttttggtgttgcattttcacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116736" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121016" g_stop="121056" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="222" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="320" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121787" g_stop="122377" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="912" r_length="592" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E738580" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121016" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCC-GTTCTTATTTTTGTGTGTTCCATTTCAATAT-TTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTG</genome_strand>
        <mrna_strand>CGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTNCATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTG-GTGTTGCATTTTCACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560893" ref_strand="+" ref_description="SGN-E560893 [20618]">
      <seq>atgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagcttgacttaattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116750" stop="122350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121030" g_stop="121056" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="208" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="306" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121787" g_stop="122050" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="569" r_length="263" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E560893" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121030" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTT</genome_strand>
        <mrna_strand>ATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTTGACTTA-ATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246594" ref_strand="+" ref_description="SGN-E246594 [cLEF-45-D2]">
      <seq>taaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcaaagatgatgaaaccaacttcaaactttgcaaggatcgatcagtgcatttaggacagaagggtattccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="120851" stop="122261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121038" g_stop="121056" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="200" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="298" r_length="98" r_score="0.908"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.992" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121787" g_stop="121961" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="473" r_length="175" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E246594" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121038" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAA</genome_strand>
        <mrna_strand>TAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAAAGATGATGAAACCAAC.........................................................................................TTCAAACTTTGCAAGGATCGATCAGTGCATTTAGGACAGAAGGGTATTCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265661" ref_strand="+" ref_description="SGN-E265661 [cLEI-14-F2]">
      <seq>aaacttggaggtgcttttgctcccaagccttcttgtggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="120851" stop="122270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121039" g_stop="121056" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121151" g_stop="121331" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="199" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="297" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121787" g_stop="121970" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="481" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E265661" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121039" e_stop="121056"/>
          <exon e_start="121151" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTA</genome_strand>
        <mrna_strand>AAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTGTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254604" ref_strand="+" ref_description="SGN-E254604 [cLEG-29-A9]">
      <seq>cttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgaccgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatgggtaagaacagctccattagattgttttttcatttcataatctttagatttttgttctccttatttctgtgctgcttaggtttgttttcttagtgattcatctatacacatggtttcacagttccgaagacaattgttgatcagattgtctacaagttttttcatcaaaaaccattgtctcgtgtcctttttcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116871" stop="121816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121052" g_stop="121056" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121151" g_stop="121533" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="385" r_length="380" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E254604" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121052" e_stop="121056"/>
          <exon e_start="121151" e_stop="121533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGA-CTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAG-ACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTT</genome_strand>
        <mrna_strand>CTTTT..............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACCGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTTTCTTAGTGATTCATC--TATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGTTTTTTCATCAAAAACCA--TTGTCTCGTGTCCT-TTTTCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556357" ref_strand="+" ref_description="SGN-E556357 [cTSD-3-D3]">
      <seq>gtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="120870" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121170" g_stop="121331" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="260" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121787" g_stop="122377" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="851" r_length="591" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E556357" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121170" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATAT-TTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTG</genome_strand>
        <mrna_strand>GTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACTCTTATTTTTG-GTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245751" ref_strand="+" ref_description="SGN-E245751 [cLEF-48-A3]">
      <seq>gccattggttattatgctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaaaggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="120895" stop="122205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121195" g_stop="121331" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="235" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121787" g_stop="121905" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="354" r_length="119" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E245751" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121195" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="121905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCAT</genome_strand>
        <mrna_strand>GCCATTGGTTATTATGCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAAGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553439" ref_strand="+" ref_description="SGN-E553439 [cTSC-1-B8]">
      <seq>attggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgcctttttatgtgatnaaaaaaaaaaaaataaaattacacctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="120898" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121198" g_stop="121331" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="232" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121787" g_stop="122402" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="847" r_length="615" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="857" polyA_stop="874"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E553439" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121198" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCT</genome_strand>
        <mrna_strand>ATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTT-TGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543423" ref_strand="+" ref_description="SGN-E543423 [TUS-65-D18](-)">
      <seq>ggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgccttttatgtgataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116935" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121215" g_stop="121331" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="215" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121787" g_stop="122410" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="838" r_length="623" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E543423" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121215" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATA</genome_strand>
        <mrna_strand>GGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTT-TGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537440" ref_strand="+" ref_description="SGN-E537440 [TUS-56-A18](-)">
      <seq>tgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgccttttatgtgatagtattttattgtccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116983" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121263" g_stop="121331" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="167" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121787" g_stop="122420" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="800" r_length="633" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="805" polyA_stop="822"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E537440" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121263" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATT</genome_strand>
        <mrna_strand>TGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTT-TGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272375" ref_strand="+" ref_description="SGN-E272375 [cLEM-19-O17]">
      <seq>tatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctgtggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="116999" stop="122434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121279" g_stop="121331" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="151" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121787" g_stop="122134" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="499" r_length="348" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E272375" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121279" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTG</genome_strand>
        <mrna_strand>TATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGTGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371058" ref_strand="+" ref_description="SGN-E371058 [TUS-29-H9](-)">
      <seq>gatgggaaaagtaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaatcttaggttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcctatttttgtgtgttccatttcaatatttgtgtactcggtactgttttacatacatttttttgtcaggaaaaaagaaagactgagttgagatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="120986" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121286" g_stop="121331" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="144" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121787" g_stop="122396" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="754" r_length="610" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E371058" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121286" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTG</genome_strand>
        <mrna_strand>GATGGGAAAAGTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCCTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577655" ref_strand="-" ref_description="SGN-E577655 [LE15BD05]">
      <seq>gctggtttcatggatgttgtactatttccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagataccaatctcattttgtatgttgaattttagcaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgagtttaagatcattcatttgcttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121292" stop="122583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121319" g_stop="121331" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121600" g_stop="121697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="111" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121787" g_stop="122344" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="666" r_length="555" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E577655" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577655" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121319" e_stop="121331"/>
          <exon e_start="121600" e_stop="121697"/>
          <exon e_start="121787" e_stop="122344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTA-TTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTAC</genome_strand>
        <mrna_strand>GCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTG-TACTATTTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGA--GATACCAATCTCA-TTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268275" ref_strand="+" ref_description="SGN-E268275 [cLEM-3-A10]">
      <seq>ttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117332" stop="122474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121603" g_stop="121697" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121787" g_stop="122174" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="483" r_length="388" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E268275" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121603" e_stop="121697"/>
          <exon e_start="121787" e_stop="122174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTG</genome_strand>
        <mrna_strand>TTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612851" ref_strand="+" ref_description="SGN-E612851 [62618]">
      <seq>cgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccgtgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagcgacaactgcttaaaaatgataggttgaacttgagatgaatttacatagattgggccatgtttctctttgtttagagggatgccattcttattggtgtgttgcatttcaacatctgtgtactcggtactgatttacttgcctttttttgtcgggaaaaaaggtagactgagttgagatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117344" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121615" g_stop="121697" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121787" g_stop="122390" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="686" r_length="603" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E612851" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121615" e_stop="121697"/>
          <exon e_start="121787" e_stop="122390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTA-ATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAAT</genome_strand>
        <mrna_strand>CGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCGACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTACATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTA--TTGGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTGCCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313081" ref_strand="+" ref_description="SGN-E313081 [cTOA-14-N15]">
      <seq>aaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgactccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcactttggacagaaagggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttacattcgaacaagattgctgacttcatcaagtttgatgtcggaaatgtggtcatggttactggcggtagaaacaggggacgtgttggaattcttaagaacagggagaagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121316" stop="122330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121616" g_stop="121697" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121787" g_stop="122030" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="326" r_length="244" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E313081" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121616" e_stop="121697"/>
          <exon e_start="121787" e_stop="122030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACA</genome_strand>
        <mrna_strand>AAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGACTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCACTTTGGACAGAAAGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTACATTCGAACAAGATTGCTGACTTCATCAAGTTTGATGTCGGAAATGTGGTCATGGTTACTGGCGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357522" ref_strand="+" ref_description="SGN-E357522 [cTOS-23-D15]">
      <seq>gacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaatcttaggttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcctatttttgtgtgttccatttcaatatttgtgtactcggtactgttttacatacatttttttgtcaggaaaaaagaaagactgagttgagatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121336" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121636" g_stop="121697" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121787" g_stop="122388" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="664" r_length="602" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="674"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E357522" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121636" e_stop="121697"/>
          <exon e_start="121787" e_stop="122388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>GACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCCTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353185" ref_strand="+" ref_description="SGN-E353185 [cTOS-14-G14]">
      <seq>gacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaatcttaggttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcctatttttgtgtgttccattttcaatattgtgtactcggtactgttttacatacattttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121336" stop="122656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121636" g_stop="121697" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121787" g_stop="122358" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="634" r_length="572" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E353185" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121636" e_stop="121697"/>
          <exon e_start="121787" e_stop="122358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCA-TTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGT</genome_strand>
        <mrna_strand>GACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCCTATTTTTGTGTGTTCCATTTTCAATA-TTGTGTACTCGGTACTGTTTTACATACATTTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557966" ref_strand="-" ref_description="SGN-E557966 [16849]">
      <seq>agggtcggttccgtctgcatcactcagagatgaggagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctatcctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagatacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagctacaactgcttacaaatgatagcttgaacttgtgataaatttaacaggttgggccatgtttctctttgtttagagataccaatcttattctgtatgttggattttaacatttttgtactcggtaccgtttaactttgttttgtctgggaaaagaggttgactgagtctaagagcattcatttgcttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121354" stop="122583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121654" g_stop="121697" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89">
            <donor d_prob="0.997" d_score="0.91"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121787" g_stop="122344" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="597" r_length="555" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E557966" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557966" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121654" e_stop="121697"/>
          <exon e_start="121787" e_stop="122344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTAC</genome_strand>
        <mrna_strand>AGGGTCGGTTCCGTCTGCA-TCACTCAGAGATGAGG-AGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTATCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGATACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCTACAACTGCTTACAAATGATAGCTTGAACTTGTGATAAATTTAACAGGTTGGGCCATGTTTCTCTTTGTTTAGA--GATACCAATCTTA-TTCTGTATGTTGGATTTTAACATTTTTGTACTCGGTACCGTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732657" ref_strand="+" ref_description="SGN-E732657 [LB02DB04]">
      <seq>caaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaatcttagtttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcttatttttgtgtgttccatttcaatatttgtgtactcggtactgttttacatacatttttttgtcaggaaaaaagaaagactgagttgagatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121489" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121789" g_stop="122388" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E732657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121789" e_stop="122388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>CAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701001" ref_strand="+" ref_description="SGN-E701001 [FA14DA08]">
      <seq>aaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagataccaatctcattttgtatgttgaattttagcaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgagtttaagatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121490" stop="122583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121790" g_stop="122344" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="607"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E701001" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121790" e_stop="122344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTAC</genome_strand>
        <mrna_strand>AAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGA--GATACCAATCTCA-TTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333583" ref_strand="-" ref_description="SGN-E333583 [cTOD-22-I24]">
      <seq>ttgcaaggttcgatcagtgcagttggacagaaggntatcccatatctcaacacgtatgatggaagancaatccgctaccctgatcccntcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactgagtttagaccaatcagttgcctttttatgtgatggtatttcattgtaagagtttaaggaccttgtcgatgagtttattcacttgtttcaaaatgagtttttggttgtaatatcttcaaatccaacctgctgttgtattccaaagttggtgtagttcactaaacctgattcgtaatttcattttcataaacttcaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="117569" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121795" g_stop="122527" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="776" polyA_stop="795"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E333583" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333583" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121795" e_stop="122527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATAT-TTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCC-TTCTATGTTATAGTATTTTATTGCGACTGAGTTTAAGGACACCTTGTCCATGAGTTTATTAACTTAATTCAAAATGAGTTTTTGGTTGTAATATTTTTTAAACTGACCCGGAGTTGGATTCCAAATTTG</genome_strand>
        <mrna_strand>TTGCAAGGTTCGATCAGTGCAG-TTGGACAGAAGGNTATCCCATATCTCAACACGTATGATGGAAGANCAATCCGCTACCCTGATCCCNTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACTCTTATTTTTG-GTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTG-TA-AGAGTTTAAGG--ACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372963" ref_strand="+" ref_description="SGN-E372963 [TUS-32-B3](-)">
      <seq>cagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaatttttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaattttaggttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcctatttttgtgtgttccatttcaatatttgtgtactcggtactgttttacatacatttttttgtcaggaaaaaagaaagactgagttgagatcaatcagttgccttttatgttatagtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121523" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121823" g_stop="122412" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="612"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E372963" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121823" e_stop="122412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGT</genome_strand>
        <mrna_strand>CAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTTTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATTTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCCTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTTTATGTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292365" ref_strand="+" ref_description="SGN-E292365 [cLET-1-M8]">
      <seq>agaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaatcttaggttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcctatttttgtgtgttccatttcaatatttgtgtactcggtactgttttacatacatttttttgtcaggaaaaaagaaagactgagttgagatcaatcagttgccttctatgttatagtnnaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121524" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121824" g_stop="122419" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E292365" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121824" e_stop="122419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTAT</genome_strand>
        <mrna_strand>AGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCCTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTNNAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372964" ref_strand="+" ref_description="SGN-E372964 [TUS-32-B3]">
      <seq>agaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaatcttaggttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcctatttttgtgtgttccatttcaatatttgtgtactcggtactgttttacatacatttttttgtcaggaaaaaagaaagactgagttgagatcaatcagttgccttctatgttatagtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121524" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121824" g_stop="122412" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="612"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E372964" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121824" e_stop="122412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGT</genome_strand>
        <mrna_strand>AGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCCTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304067" ref_strand="+" ref_description="SGN-E304067 [cLEX-6-O15](-)">
      <seq>cacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgccttttatgtgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121546" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121846" g_stop="122410" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E304067" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121846" e_stop="122410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATA</genome_strand>
        <mrna_strand>CACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTT-TGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E610143" ref_strand="+" ref_description="SGN-E610143 [57297]">
      <seq>atcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaatagattgggccatgtttctctttgtttagagggatgccattcttattttgtgtgttgcatttcaacatctgtgtactcggtactgatttacttacctttttttgtcgggaaaaaaggtagactgagttgagatcaatcagttgccttttatgtgatagtattttattgcgacagagtttaaggaccttgtccattagcctattcacttatttcaaaatgagtttttggttgtaatattttcaaatctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121586" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121886" g_stop="122495" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="615" polyA_stop="627"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E610143" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121886" e_stop="122495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATTGCGACTGAGTTTAAGGACACCTTGTCCATGAGTTTATTAACTTAATTCAAAATGAGTTTTTGGTTGTAATATTTT</genome_strand>
        <mrna_strand>ATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTA-TTTTGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTACCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGCGACAGAGTTTAAGG--ACCTTGTCCATTAGCCTATTCACTTATTTCAAAATGAGTTTTTGGTTGTAATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265906" ref_strand="-" ref_description="SGN-E265906 [cLEI-11-L14]">
      <seq>tccaataagattgttgacttcctcaaatttgatgttggcaatgtggttatggttactggtggtagaaacaggggacgtgttgtcattcttaagaatagagagaagctcaagggtagctttgagacagttcacattcaaaactccctagggcatcagtttgcaacccgtttggataatgtgttcactcttggcaagggtagtaagccatgggtgtcccttcctaaggggaaaggtaccaagttatctatcattgaagaggctcgcaaaaggatggctgcccaaccagctatcaactgcttaaaaatcttaggttgaacttgagatgagattaataggttgggccatatctctatttgtttaaagggatgccgttccgatttttgtgtgttccatttcaaaatttgtgaactcggtaatgttttacatacatttttttgtcaggaaaaaagaacgtttcagttgagatcctaaatcaaaaaagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121622" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121922" g_stop="122388" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="494"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E265906" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265906" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121922" e_stop="122388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTA-CAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>TCCAATAAGATTGTTGACTTCCTCAAATTTGATGTTGGCAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGTCATTCTTAAGAATAGAGAGAAGCTCAAGGGTAGCTTTGAGACAGTTCACATTCAAAACTCCCTAGGGCATCAGTTTGCAACCCGTTTGGATAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCCCTTCCTAAGGGGAAAGGTACCAAGTTATCTATCATTGAAGAGGCTCGCAAAAGGATGGCTGCCCAACCAGCTATCAACTGCTTAAAAATCTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATCTCTATTTGTTTAAAGGGATGCCGTTCCGATTTTTGTGTGTTCCATTTCAAAATTTGTGAACTCGGTAATGTTTTACATACATTTTTTTGTCAGGAAAAAAGAACGTTTCAGTTGAGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221458" ref_strand="+" ref_description="SGN-E221458 [cLEL-10-J8](-)">
      <seq>gttgacttcatcaagtttaatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcccaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121634" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121934" g_stop="122388" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="470"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E221458" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121934" e_stop="122388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>GTTGACTTCATCAAGTTTAATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCCCAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTT-TGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227583" ref_strand="+" ref_description="SGN-E227583 [cLEL-30-O20](-)">
      <seq>catcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgccccctatgtgatagtattttattgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121642" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121942" g_stop="122420" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="482" polyA_stop="498"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E227583" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121942" e_stop="122420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATT</genome_strand>
        <mrna_strand>CATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTT-TGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCCCCTATGTGATAGTATTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E610782" ref_strand="+" ref_description="SGN-E610782 [57950]">
      <seq>gtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaatagattgggccatgtttctctttgtttagagggatgccattcttattttgtgtgttgcatttcaacatctgtgtactcggtactgatttacttacctttttttgtcgggaaaaaaggtagactgagttgagatcaatcagttgccttttatgtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121667" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121967" g_stop="122404" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="451"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E610782" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121967" e_stop="122404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTAT</genome_strand>
        <mrna_strand>GTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTA-TTTTGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTACCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCAATCAGTTGCCTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E609645" ref_strand="+" ref_description="SGN-E609645 [25658]">
      <seq>aaggtccttaaactctgtcgcaataaaatactatcacataaaaggcaactgattgatctcaactcagtctaccttttttcccgacaaaaaaaggtaagtaaatcagtaccgagtacacagatgttgaaatgcaacacacaaaataagaatggcatccctctaaacaaagagaaacatggcccaatctattaaattcatctcaagttcaacctatcatttttaagcagttgtagctgattgagtagccatcctcttgcgagcctcttcaatgatagataacttgatacctttacccttaggtagagacacccatggcttactacctttaccaagagtgaacacattccccaaacgggtagcaaactcatgccccagggaatcctgaatgtgaactgtctcaaagctacccttgtgcttctctctgttcttaagaattccaagacgccccctgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="-" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="122675" stop="121686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122442" g_stop="121986" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="-" ref_id="SGN-E609645" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122442" e_stop="121986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGTCCTTAAACTCAGTCGCAATAAAATACTATAACATAGAAGGCAACTGATTGATCTCAACTCAGTCTTTCTTTTTTCCTGACAAAAAAATGTATGTAAAACAGTACCGAGTACACAAATATTGAAATGGAACACACAAAAATAAGAACGGCATCCCTCTAAACAAAGAGAAATATGGCCCAACCTATTAATCTCATCTCAAGTTCAAACTAAGATTTTTAAGCAGTTGTAGCTGATTGGGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTCCCCTTAGGTAGAGACACCCATGGCTTACTACCCTTGCCAAGAGTGAACACATTTCCCAAACGGGTAGCAAACTCATGCCCCAGGGAGTCTTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGAATTCCAACACGTCCCCTGTTTC</genome_strand>
        <mrna_strand>AAG-GTCCTTAAACTCTGTCGCAATAAAATACTATCACATAAAAGGCAACTGATTGATCTCAACTCAGTCTACCTTTTTTCCCGACAAAAAAAGGTAAGTAAATCAGTACCGAGTACACAGATGTTGAAATGCAACACAC-AAAATAAGAATGGCATCCCTCTAAACAAAGAGAAACATGGCCCAATCTATTAAATTCATCTCAAGTTCAACCTATCATTTTTAAGCAGTTGTAGCTGATTGAGTAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTACCCTTAGGTAGAGACACCCATGGCTTACTACCTTTACCAAGAGTGAACACATTCCCCAAACGGGTAGCAAACTCATGCCCCAGGGAATCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTGTTCTTAAGAATTCCAAGACGCCCCCTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412717" ref_strand="-" ref_description="SGN-E412717 [STM-16-P13]">
      <seq>cagggggcgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccgtgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagcgacaactgcttaaaaatgataggttgaacttgagatgaatttaatagattgggccatgtttctctttgtttagagggatgccattcttattttgtgtgttgcatttcaacatctgtgtactcggtactgatttacttgcctttttttgtcgggaaaaaaggtagactgagttgagatcaatcagttgccttttatgtgatagtattttattgcgacagagtttaaggaccttgtccattagtatattcacttatttcaaaatgagttttggttgtaatattttcaaatctaacctggagttggattccaaatttggtatagtgcagtaaccctggaaaaaaaaaaaaaaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121690" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121990" g_stop="122527" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="573"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E412717" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412717" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121990" e_stop="122527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATTGCGACTGAGTTTAAGGACACCTTGTCCATGAGTTTATTAACTTAATTCAAAATGAGTTTTTGGTTGTAATATTTTTTAAACTGACCCGGAGTTGGATTCCAAATTTG</genome_strand>
        <mrna_strand>CAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCGACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTA-TTTTGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTGCCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGCGACAGAGTTTAAGG--ACCTTGTCCATTAGTATATTCACTTATTTCAAAATGAG-TTTTGGTTGTAATATTTTCAAATCTAACCTGGAGTTGGATTCCAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234686" ref_strand="+" ref_description="SGN-E234686 [cLEL-6-B6](-)">
      <seq>cgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacataccttttttttgtcaggaaaaaacaatgactgagtttagaccaatcagttgcctttttatgtgatggtatttcattgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121697" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121997" g_stop="122420" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="446"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E234686" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121997" e_stop="122420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATAT-TTGTGTACTCGGTACTGTTTTACATACATTTTTTT-GTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCC-TTCTATGTTATAGTATTTTATT</genome_strand>
        <mrna_strand>CGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACTCTTATTTTTG-GTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222026" ref_strand="+" ref_description="SGN-E222026 [cLEL-10-J8](-)">
      <seq>aagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121712" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122012" g_stop="122388" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="392"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E222026" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122012" e_stop="122388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>AAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTT-TGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E609306" ref_strand="+" ref_description="SGN-E609306 [25311]">
      <seq>cggcacgagggtagctttgagacagtcacattcaggatccctggggcatgagtttgctaccgtttggggaatgtgtcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaatagattgggccatgtttctctttgtttagagggatgccattcttattttgtgtgttgcatttcaacatctgtgtactcggtactgatttacttacctttttttgtcgggaaaaaaggtagactgagttgagatcaatcagttgccttttatgtgatagtattttattgcgacagagtttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121726" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122024" g_stop="122434" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="421"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E609306" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122024" e_stop="122434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATTGCGACTGAGTTTAA</genome_strand>
        <mrna_strand>CGGCACGAGGGTAGCTTTGAGACAGT-CACATTCAGGA-TCCCTGGGGCATGAGTTTGCTA-CCGTTTGGGGAATGTG-TCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTA-TTTTGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTACCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGCGACAGAGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234974" ref_strand="+" ref_description="SGN-E234974 [cLEL-6-B6](-)">
      <seq>gctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacataccttttttttgtcaggaaaaaacaatgactgagtttagaccaatcagttgcctttttatgtgatggtatttcattgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121737" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122037" g_stop="122420" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="406"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E234974" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122037" e_stop="122420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATAT-TTGTGTACTCGGTACTGTTTTACATA-CATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCC-TTCTATGTTATAGTATTTTATT</genome_strand>
        <mrna_strand>GCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACTCTTATTTTTG-GTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541674" ref_strand="+" ref_description="SGN-E541674 [TUS-62-J11](-)">
      <seq>ttccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactgagtttagaccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121763" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122062" g_stop="122388" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="328" polyA_stop="339"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E541674" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122062" e_stop="122388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATAT-TTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>TTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACTCTTATTTTTG-GTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541676" ref_strand="+" ref_description="SGN-E541676 [TUS-62-J11]">
      <seq>ttccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactgagtttagaccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121763" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122062" g_stop="122388" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="328" polyA_stop="339"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E541676" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122062" e_stop="122388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATAT-TTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>TTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACTCTTATTTTTG-GTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298668" ref_strand="+" ref_description="SGN-E298668 [cLET-44-M20]">
      <seq>tccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactgagtttagaccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121763" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122063" g_stop="122388" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="338"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E298668" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122063" e_stop="122388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATAT-TTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>TCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACTCTTATTTTTG-GTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612038" ref_strand="+" ref_description="SGN-E612038 [61796]">
      <seq>tggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccgtgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagcgacaactgcttaaaaatgataggttgaacttgagatgaatttaatagattgggccatgtttctctttgtttagagggatgccattcttattttgtgtgttgcatttcaacatctgtgtactcggtactgatttacttgcctttttttgtcgggaaaaaaggtagactgagttgagatcaatcagttgccttttatgtgatagtattttattgcgacagagtttaaggaccttgtccattagtatattcacttatttcaaaatgagttttggttgtaatattttcaaatctaacctggagttggattccaaatttggtatagtgcagtaaacctgattcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121767" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122067" g_stop="122527" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="483" polyA_stop="493"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E612038" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122067" e_stop="122527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATTGCGACTGAGTTTAAGGACACCTTGTCCATGAGTTTATTAACTTAATTCAAAATGAGTTTTTGGTTGTAATATTTTTTAAACTGACCCGGAGTTGGATTCCAAATTTG</genome_strand>
        <mrna_strand>TGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCGACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTA-TTTTGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTGCCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGCGACAGAGTTTAAGG--ACCTTGTCCATTAGTATATTCACTTATTTCAAAATGAG-TTTTGGTTGTAATATTTTCAAATCTAACCTGGAGTTGGATTCCAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E607672" ref_strand="+" ref_description="SGN-E607672 [23643]">
      <seq>gggcatgagttgctacccgtttggggaatgtgtcactcttggtaaaggtagtaagccgtgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagcgacaactgcttaaaaatgataggttgaacttgagatgaatttaatagattgggccatgtttctctttgtttagagggatgccattcttattttgtgtgttgcatttcaacatctgtgtactcggtactgatttacttgcctttttttgtcgggaaaaaaggtagactgagttgagatcaaaaaaagggggggcccggtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121769" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122069" g_stop="122388" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E607672" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122069" e_stop="122388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>GGGCATGAG-TTGCTACCCGTTTGGGGAATGTG-TCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCGACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTA-TTTTGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTGCCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228847" ref_strand="+" ref_description="SGN-E228847 [cLEL-29-D24](-)">
      <seq>ggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121770" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122070" g_stop="122388" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="319" polyA_stop="334"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E228847" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122070" e_stop="122388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>GGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTT-TGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228943" ref_strand="+" ref_description="SGN-E228943 [cLEL-29-D24](-)">
      <seq>atgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121828" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122128" g_stop="122388" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="261" polyA_stop="276"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E228943" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122128" e_stop="122388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>ATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTT-TGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615986" ref_strand="+" ref_description="SGN-E615986 [65790]">
      <seq>gtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaatagattgggccatgtttctctttgtttagagggatgccattcttattttgtgtgttgcatttcaacatctgtgtactcggtactgatttacttacctttttttgtcgggaaaaaaggtagactgagttgagatcaatcagttgccttttatgtgatagtattttattgcgacagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0160F05-01m2C/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0160F05.2" temp_strand="+" temp_description="C02HBa0160F05.2  AC215401.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0160F05 sequenced_by:kribb upload_account_name:korea">
        <position start="121848" stop="122675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122148" g_stop="122428" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="281" polyA_stop="298"/>
      <MATCH_line gen_id="C02HBa0160F05.2" gen_strand="+" ref_id="SGN-E615986" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0160F05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122148" e_stop="122428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATTGCGACTGA</genome_strand>
        <mrna_strand>GTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTA-TTTTGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTACCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGCGACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>440</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6455" PGL_stop="7331"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6455" e_stop="7331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="6455" e_stop="7331" e_length="877"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6455" stop="7126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6464" stop="6795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6611" stop="7331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATAAAAACCATATTTGTTGTACACTAGTGACATAAACTCAAGTTTGATACTTTTATCAGTTGGTAAAAATGTAAGCAAGCAAAGAAGTAGTGAAGGCCGGAATGAGATGTCATATGTAGTATACAATCTGATGACACTACTTGCTAGGTCTCCACTACAAGAACTAGCCATAATGTGTTCTCCCTGTATGGAGATATATCAGTCATTTGCATTTGCAGAGGCAAGATTGCATCTTCAGAGTTTCTCATAAGATTTTACTTTTCTGTGCCAGTAGTAGCATCTCCATCCATGCTATTCTTCTTTTTCTTTCCATCACCATGTCTGGACCTTCTAGGGGCTTCATCCTCGCTCTCGCTTTCATCATTTCTAAAGCTGTTTTCAGTTTGTGGATAATGTACTCCTTCATCTGGTCCAACAACTGAGCCTGCAGTCTCTTGACCCCTACCTTGGTCTGGACCTGAACTGAATCTATCGTTCCTTTCATTAAAAGGAGCTCGCTGATCCTTTTTGACCCGAGGATTTTGAGAGGGCGGTGGTGGGGGTGGTGTAAATGATGGATGCATTCCCATTGGTCGACCACCTCTGGGTGGGCCAGGTGCTCCAGGACCCATTCCACCCATGAAAGGGGGCCTTGCTGGACCCATCATCATCCCAAATCCACCAGCAGCCGGAGGACGGCTGTGAAACATCATATCACCAGGGAATCGAGGGCCAAATGGTCCAAAAGGTCGGCCACCCATTCCATAAGGATCAGGCATAGGAAAACCATCAGGTGTCATTGATCCATAAGAAAATCCATCACTCATAATGCCTGGGGGGAAGCCCCGCATCCCAGGGAAAGGCCTGGCTCCACGAAAAGGAACTAGAGGAGGCC</gDNA_template>
            <first_frame> K  I  K  T  I  F  V  V  H  *  *  H  K  L  K  F  D  T  F  I  S  W  *  K  C  K  Q  A  K  K  *  *  R  P  E  *  D  V  I  C  S  I  Q  S  D  D  T  T  C  *  V  S  T  T  R  T  S  H  N  V  F  S  L  Y  G  D  I  S  V  I  C  I  C  R  G  K  I  A  S  S  E  F  L  I  R  F  Y  F  S  V  P  V  V  A  S  P  S  M  L  F  F  F  F  F  P  S  P  C  L  D  L  L  G  A  S  S  S  L  S  L  S  S  F  L  K  L  F  S  V  C  G  *  C  T  P  S  S  G  P  T  T  E  P  A  V  S  *  P  L  P  W  S  G  P  E  L  N  L  S  F  L  S  L  K  G  A  R  *  S  F  L  T  R  G  F  *  E  G  G  G  G  G  G  V  N  D  G  C  I  P  I  G  R  P  P  L  G  G  P  G  A  P  G  P  I  P  P  M  K  G  G  L  A  G  P  I  I  I  P  N  P  P  A  A  G  G  R  L  *  N  I  I  S  P  G  N  R  G  P  N  G  P  K  G  R  P  P  I  P  *  G  S  G  I  G  K  P  S  G  V  I  D  P  *  E  N  P  S  L  I  M  P  G  G  K  P  R  I  P  G  K  G  L  A  P  R  K  G  T  R  G  G  </first_frame>
            <second_frame>  K  *  K  P  Y  L  L  Y  T  S  D  I  N  S  S  L  I  L  L  S  V  G  K  N  V  S  K  Q  R  S  S  E  G  R  N  E  M  S  Y  V  V  Y  N  L  M  T  L  L  A  R  S  P  L  Q  E  L  A  I  M  C  S  P  C  M  E  I  Y  Q  S  F  A  F  A  E  A  R  L  H  L  Q  S  F  S  *  D  F  T  F  L  C  Q  *  *  H  L  H  P  C  Y  S  S  F  S  F  H  H  H  V  W  T  F  *  G  L  H  P  R  S  R  F  H  H  F  *  S  C  F  Q  F  V  D  N  V  L  L  H  L  V  Q  Q  L  S  L  Q  S  L  D  P  Y  L  G  L  D  L  N  *  I  Y  R  S  F  H  *  K  E  L  A  D  P  F  *  P  E  D  F  E  R  A  V  V  G  V  V  *  M  M  D  A  F  P  L  V  D  H  L  W  V  G  Q  V  L  Q  D  P  F  H  P  *  K  G  A  L  L  D  P  S  S  S  Q  I  H  Q  Q  P  E  D  G  C  E  T  S  Y  H  Q  G  I  E  G  Q  M  V  Q  K  V  G  H  P  F  H  K  D  Q  A  *  E  N  H  Q  V  S  L  I  H  K  K  I  H  H  S  *  C  L  G  G  S  P  A  S  Q  G  K  A  W  L  H  E  K  E  L  E  E  A </second_frame>
            <third_frame>   N  K  N  H  I  C  C  T  L  V  T  *  T  Q  V  *  Y  F  Y  Q  L  V  K  M  *  A  S  K  E  V  V  K  A  G  M  R  C  H  M  *  Y  T  I  *  *  H  Y  L  L  G  L  H  Y  K  N  *  P  *  C  V  L  P  V  W  R  Y  I  S  H  L  H  L  Q  R  Q  D  C  I  F  R  V  S  H  K  I  L  L  F  C  A  S  S  S  I  S  I  H  A  I  L  L  F  L  S  I  T  M  S  G  P  S  R  G  F  I  L  A  L  A  F  I  I  S  K  A  V  F  S  L  W  I  M  Y  S  F  I  W  S  N  N  *  A  C  S  L  L  T  P  T  L  V  W  T  *  T  E  S  I  V  P  F  I  K  R  S  S  L  I  L  F  D  P  R  I  L  R  G  R  W  W  G  W  C  K  *  W  M  H  S  H  W  S  T  T  S  G  W  A  R  C  S  R  T  H  S  T  H  E  R  G  P  C  W  T  H  H  H  P  K  S  T  S  S  R  R  T  A  V  K  H  H  I  T  R  E  S  R  A  K  W  S  K  R  S  A  T  H  S  I  R  I  R  H  R  K  T  I  R  C  H  *  S  I  R  K  S  I  T  H  N  A  W  G  E  A  P  H  P  R  E  R  P  G  S  T  K  R  N  *  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6631" stop="6879"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVLPVWRYISHLHLQRQDCIFRVSHKILLFCASSSISIHAILLFLSITMSGPSRGFILALAFIISKAVFSLWIMYSFIWSNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6605" stop="6850"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSTTRTSHNVFSLYGDISVICICRGKIASSEFLIRFYFSVPVVASPSMLFFFFFPSPCLDLLGASSSLSLSSFLKLFSVCG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6462" stop="6707"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPYLLYTSDINSSLILLSVGKNVSKQRSSEGRNEMSYVVYNLMTLLARSPLQELAIMCSPCMEIYQSFAFAEARLHLQSFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7012" stop="7239"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WMHSHWSTTSGWARCSRTHSTHERGPCWTHHHPKSTSSRRTAVKHHITRESRAKWSKRSATHSIRIRHRKTIRCH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="19094" PGL_stop="19561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19094" e_stop="19561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="19094" e_stop="19561" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19094" stop="19561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATGATTCTAACAAGGCTCTGGATAAACAATTTACAGCTGACATGGAAGACTCCAAATTATTCACCTATTTAAGTAGACAGGCTGACTACATGACCTAAGTAAAGACCTTGAAACTCTGAACACACCTAGATGGTCCTTGAGGCAGGGGTATTGCAGCCTGATTTTGCTGGGTGCCGGGAAGGGTTTGTGTTTGAGTTGGGGGCCCCTGATGTTGAGGCTGTTGAACTTGTTGTTGATGCGGCTGGTGCGGTTGGCCAATGGGTGGTTCCGTTGCTGTAGATTTCACTGCTTGATTCATTACATTAGGTACTTGCGGAATTTGAGATTTGTCTGCCTGAGTTGAATAATTTGTATTCCGATTTTGAAAAAACCTGTTCGAGTAACCATGGGATGTCAAATTCTGAATTTTCTGAAGAACTTCTACCACTGGAGGTGGAGGTCCAGGCATCTTTGCATGTCTATATC</gDNA_template>
            <first_frame> F  M  I  L  T  R  L  W  I  N  N  L  Q  L  T  W  K  T  P  N  Y  S  P  I  *  V  D  R  L  T  T  *  P  K  *  R  P  *  N  S  E  H  T  *  M  V  L  E  A  G  V  L  Q  P  D  F  A  G  C  R  E  G  F  V  F  E  L  G  A  P  D  V  E  A  V  E  L  V  V  D  A  A  G  A  V  G  Q  W  V  V  P  L  L  *  I  S  L  L  D  S  L  H  *  V  L  A  E  F  E  I  C  L  P  E  L  N  N  L  Y  S  D  F  E  K  T  C  S  S  N  H  G  M  S  N  S  E  F  S  E  E  L  L  P  L  E  V  E  V  Q  A  S  L  H  V  Y  I </first_frame>
            <second_frame>  L  *  F  *  Q  G  S  G  *  T  I  Y  S  *  H  G  R  L  Q  I  I  H  L  F  K  *  T  G  *  L  H  D  L  S  K  D  L  E  T  L  N  T  P  R  W  S  L  R  Q  G  Y  C  S  L  I  L  L  G  A  G  K  G  L  C  L  S  W  G  P  L  M  L  R  L  L  N  L  L  L  M  R  L  V  R  L  A  N  G  W  F  R  C  C  R  F  H  C  L  I  H  Y  I  R  Y  L  R  N  L  R  F  V  C  L  S  *  I  I  C  I  P  I  L  K  K  P  V  R  V  T  M  G  C  Q  I  L  N  F  L  K  N  F  Y  H  W  R  W  R  S  R  H  L  C  M  S  I   </second_frame>
            <third_frame>   Y  D  S  N  K  A  L  D  K  Q  F  T  A  D  M  E  D  S  K  L  F  T  Y  L  S  R  Q  A  D  Y  M  T  *  V  K  T  L  K  L  *  T  H  L  D  G  P  *  G  R  G  I  A  A  *  F  C  W  V  P  G  R  V  C  V  *  V  G  G  P  *  C  *  G  C  *  T  C  C  *  C  G  W  C  G  W  P  M  G  G  S  V  A  V  D  F  T  A  *  F  I  T  L  G  T  C  G  I  *  D  L  S  A  *  V  E  *  F  V  F  R  F  *  K  N  L  F  E  *  P  W  D  V  K  F  *  I  F  *  R  T  S  T  T  G  G  G  G  P  G  I  F  A  C  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19182" stop="19439"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHDLSKDLETLNTPRWSLRQGYCSLILLGAGKGLCLSWGPLMLRLLNLLLMRLVRLANGWFRCCRFHCLIHYIRYLRNLRFVCLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20901" PGL_stop="19215"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20901" e_stop="20407"/>
            <exon e_start="19599" e_stop="19215"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.996" e_score="0.998"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="20901" e_stop="20407" e_length="495"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20406" i_stop="19600" i_length="807"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="19599" e_stop="19215" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20901" stop="20407"/>
              <exon start="19599" stop="19271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20819" stop="20407"/>
              <exon start="19599" stop="19215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20818" stop="20407"/>
              <exon start="19599" stop="19257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAACCAAAAGCCCTGCCCCTGGGTTAGGACTTGAAAAACCTTGGTGGCTCCATAAACCCCAAATTCAACCAGAAATCAAGATTGATTGACTACACTAACAGAGAAGAATCTTCTCAAAATGGATGACGGAGAAGGAGGACTAAACTTTGATTTTGAAGGTGGCTTAGATACAGGGCCAACACACCCAACTGCATCTGTACCAGTAATACAAGCAGGTCCCGCCCCAAATGCTTCTGTTGCCGTAGTTCCTCCAGGCGGCGGTGTGGGGCTAGGAGGTGATGGTTCATTTGTTGGTAACCGTAGAAGTTTCAGGCAGACTGTTTGTAGGCATTGGCTGCGGTCCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCACCAGTATGATAAGTCCCGGATGCCCGTTTGCAGGTTCTTTAGACTCTATGGAGAGTGCCGTGAACAAGATTGTGTTTATAAGCACACCAATGAGGATATTAAAGAATGTAACAT : GTTTAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGACATGCAAAGATGCCTGGACCTCCACCTCCAGTGGTAGAAGTTCTTCAGAAAATTCAGAATTTGACATCCCATGGTTACTCGAACAGGTTTTTTCAAAATCGGAATACAAATTATTCAACTCAGGCAGACAAATCTCAAATTCCGCAAGTACCTAATGTAATGAATCAAGCAGTGAAATCTACAGCAACGGAACCACCCATTGGCCAACCGCACCAGCCGCATCAACAACAAGTTCAACAGCCTCAACATCAGGGGCCCCCAACTCAAACACAAACCCTTCCCGGCACCCAGCAAAATCAGGCTGCAATACCCCTGCCTCAAGGACCATCTAGGTGTGTT</gDNA_template>
            <first_frame> K  Q  P  K  A  L  P  L  G  *  D  L  K  N  L  G  G  S  I  N  P  K  F  N  Q  K  S  R  L  I  D  Y  T  N  R  E  E  S  S  Q  N  G  *  R  R  R  R  T  K  L  *  F  *  R  W  L  R  Y  R  A  N  T  P  N  C  I  C  T  S  N  T  S  R  S  R  P  K  C  F  C  C  R  S  S  S  R  R  R  C  G  A  R  R  *  W  F  I  C  W  *  P  *  K  F  Q  A  D  C  L  *  A  L  A  A  V  L  V  Y  E  G  *  C  L  W  F  P  S  P  V  *  *  V  P  D  A  R  L  Q  V  L  *  T  L  W  R  V  P  *  T  R  L  C  L  *  A  H  Q  *  G  Y  *  R  M  *  H  :  V  *  I  R  I  L  S  E  W  S  *  L  P  I  *  T  C  K  D  A  W  T  S  T  S  S  G  R  S  S  S  E  N  S  E  F  D  I  P  W  L  L  E  Q  V  F  S  K  S  E  Y  K  L  F  N  S  G  R  Q  I  S  N  S  A  S  T  *  C  N  E  S  S  S  E  I  Y  S  N  G  T  T  H  W  P  T  A  P  A  A  S  T  T  S  S  T  A  S  T  S  G  A  P  N  S  N  T  N  P  S  R  H  P  A  K  S  G  C  N  T  P  A  S  R  T  I  *  V  C  </first_frame>
            <second_frame>  N  N  Q  K  P  C  P  W  V  R  T  *  K  T  L  V  A  P  *  T  P  N  S  T  R  N  Q  D  *  L  T  T  L  T  E  K  N  L  L  K  M  D  D  G  E  G  G  L  N  F  D  F  E  G  G  L  D  T  G  P  T  H  P  T  A  S  V  P  V  I  Q  A  G  P  A  P  N  A  S  V  A  V  V  P  P  G  G  G  V  G  L  G  G  D  G  S  F  V  G  N  R  R  S  F  R  Q  T  V  C  R  H  W  L  R  S  L  C  M  K  G  D  A  C  G  F  L  H  Q  Y  D  K  S  R  M  P  V  C  R  F  F  R  L  Y  G  E  C  R  E  Q  D  C  V  Y  K  H  T  N  E  D  I  K  E  C  N  M :   F  K  L  G  F  C  P  N  G  P  D  C  R  Y  R  H  A  K  M  P  G  P  P  P  P  V  V  E  V  L  Q  K  I  Q  N  L  T  S  H  G  Y  S  N  R  F  F  Q  N  R  N  T  N  Y  S  T  Q  A  D  K  S  Q  I  P  Q  V  P  N  V  M  N  Q  A  V  K  S  T  A  T  E  P  P  I  G  Q  P  H  Q  P  H  Q  Q  Q  V  Q  Q  P  Q  H  Q  G  P  P  T  Q  T  Q  T  L  P  G  T  Q  Q  N  Q  A  A  I  P  L  P  Q  G  P  S  R  C  V </second_frame>
            <third_frame>   T  T  K  S  P  A  P  G  L  G  L  E  K  P  W  W  L  H  K  P  Q  I  Q  P  E  I  K  I  D  *  L  H  *  Q  R  R  I  F  S  K  W  M  T  E  K  E  D  *  T  L  I  L  K  V  A  *  I  Q  G  Q  H  T  Q  L  H  L  Y  Q  *  Y  K  Q  V  P  P  Q  M  L  L  L  P  *  F  L  Q  A  A  V  W  G  *  E  V  M  V  H  L  L  V  T  V  E  V  S  G  R  L  F  V  G  I  G  C  G  P  C  V  *  R  V  M  L  V  V  S  F  T  S  M  I  S  P  G  C  P  F  A  G  S  L  D  S  M  E  S  A  V  N  K  I  V  F  I  S  T  P  M  R  I  L  K  N  V  T   : C  L  N  *  D  F  V  R  M  V  L  I  A  D  I  D  M  Q  R  C  L  D  L  H  L  Q  W  *  K  F  F  R  K  F  R  I  *  H  P  M  V  T  R  T  G  F  F  K  I  G  I  Q  I  I  Q  L  R  Q  T  N  L  K  F  R  K  Y  L  M  *  *  I  K  Q  *  N  L  Q  Q  R  N  H  P  L  A  N  R  T  S  R  I  N  N  K  F  N  S  L  N  I  R  G  P  Q  L  K  H  K  P  F  P  A  P  S  K  I  R  L  Q  Y  P  C  L  K  D  H  L  G  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20813" stop="20407"/>
                    <exon start="19599" stop="19215"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTTLTEKNLLKMDDGEGGLNFDFEGGLDTGPTHPTASVPVIQAGPAPNASVAVVPPGGGVGLGGDGSFVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDIKECNMFKLGFCPNGPDCRYRHAKMPGPPPPVVEVLQKIQNLTSHGYSNRFFQNRNTNYSTQADKSQIPQVPNVMNQAVKSTATEPPIGQPHQPHQQQVQQPQHQGPPTQTQTLPGTQQNQAAIPLPQGPSRCV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="27912" PGL_stop="22847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27912" e_stop="27570"/>
            <exon e_start="26936" e_stop="26764"/>
            <exon e_start="24072" e_stop="23927"/>
            <exon e_start="23191" e_stop="22847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27912" e_stop="27570" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27569" i_stop="26937" i_length="633"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26936" e_stop="26764" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26763" i_stop="24073" i_length="2691"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24072" e_stop="23927" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.914" acc_prob="0.990">
            <gDNA_intron_boundary i_start="23926" i_stop="23192" i_length="735"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="23191" e_stop="22847" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27912" stop="27570"/>
              <exon start="26936" stop="26764"/>
              <exon start="24072" stop="23927"/>
              <exon start="23191" stop="22945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27906" stop="27570"/>
              <exon start="26936" stop="26764"/>
              <exon start="24072" stop="23927"/>
              <exon start="23191" stop="22847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27902" stop="27570"/>
              <exon start="26936" stop="26764"/>
              <exon start="24072" stop="23934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27872" stop="27570"/>
              <exon start="26936" stop="26764"/>
              <exon start="24072" stop="24008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27853" stop="27570"/>
              <exon start="26936" stop="26839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27835" stop="27570"/>
              <exon start="26936" stop="26799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27831" stop="27570"/>
              <exon start="26936" stop="26764"/>
              <exon start="24072" stop="23927"/>
              <exon start="23191" stop="23058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27831" stop="27570"/>
              <exon start="26936" stop="26764"/>
              <exon start="24072" stop="23927"/>
              <exon start="23191" stop="23109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27831" stop="27570"/>
              <exon start="26936" stop="26801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27831" stop="27570"/>
              <exon start="26936" stop="26831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27831" stop="27570"/>
              <exon start="26936" stop="26856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27831" stop="27612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27824" stop="27570"/>
              <exon start="26936" stop="26800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27805" stop="27570"/>
              <exon start="26936" stop="26764"/>
              <exon start="24072" stop="24008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27788" stop="27570"/>
              <exon start="26936" stop="26764"/>
              <exon start="24072" stop="23927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27783" stop="27570"/>
              <exon start="26936" stop="26764"/>
              <exon start="24072" stop="23934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26833" stop="26764"/>
              <exon start="24072" stop="23927"/>
              <exon start="23191" stop="22856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23944" stop="23927"/>
              <exon start="23191" stop="22856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23942" stop="23927"/>
              <exon start="23191" stop="22855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAAATCACTGAGTGCACTCGAAGAGAGGGGGATTCCAAAATTAGATTTGTTCACGCAATATATCAGGACCGGACCGGACCGGACCGGCATTACCACGAAAAAGGAATTCCGGCGACATCACGGTGCTGATTCAATGGCGAATCACGTAGCTGAGGAAAAGCCTCTTAGGAAAATGGCGGAAGCTTTCAAAGACCTAGCCAACACTTTAAATTCTCAAACCCTAGATGAAGCTGCTAAGATGGAAGTAGCTCCTTTCTCTCACGCTTGTACTTTGGTCTCTCCTCTATTCCGCTGCCTCGGTATCGCCTTCAAGTTTGCTGAGCTCGATTACGTTGCTAAG : GTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA : GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATG : AAGACTCCGCAAGAACGCAGATGCAAAATTATGTCGCCTCGTGTGATACTGTCATTTTGTACATTGACAAACTCTTCACGTCAAGAGATTTGGGTACTGATTGGTGACCATGAAGAACTGGATGTCATAATGCTCATTCATTCATGTGATTCGCCCCTAATCACTTATATGTATAATCATTTGACGCAGTGGTCCAAATATTTGATTGTAACTAACTTATCTTAACTAGCAGGGAAATGAAAAAATGCCCTAGAACAGAAAACTATCTATCTGCACTTGGGGCGACGTTGAGCTCATTATTTTTTAAAAAAAAAGAAAATATACCACTTCAGCTTGACTCGAGTG</gDNA_template>
            <first_frame> I  K  I  T  E  C  T  R  R  E  G  D  S  K  I  R  F  V  H  A  I  Y  Q  D  R  T  G  P  D  R  H  Y  H  E  K  G  I  P  A  T  S  R  C  *  F  N  G  E  S  R  S  *  G  K  A  S  *  E  N  G  G  S  F  Q  R  P  S  Q  H  F  K  F  S  N  P  R  *  S  C  *  D  G  S  S  S  F  L  S  R  L  Y  F  G  L  S  S  I  P  L  P  R  Y  R  L  Q  V  C  *  A  R  L  R  C  *   : G  E  *  S  S  R  G  I  K  V  Y  Y  N  V  A  H  N  D  G  S  R  Y  S  S  K  L  C  E  K  G  R  *  S  Y  K  E  L  V  K  S  *  A  W  A  G  Y  G  *  G  V  V  R  G  D  Y  S  L  R  :  G  E  F  L  E  R  S  S  I  K  S  I  Y  T  S  V  C  S  I  P  W  M  G  H  Q  E  S  C  V  C  R  N  V  C  P  P  H  P  A  T  A  D  D  Q  A  *  *  R  * :   R  L  R  K  N  A  D  A  K  L  C  R  L  V  *  Y  C  H  F  V  H  *  Q  T  L  H  V  K  R  F  G  Y  *  L  V  T  M  K  N  W  M  S  *  C  S  F  I  H  V  I  R  P  *  S  L  I  C  I  I  I  *  R  S  G  P  N  I  *  L  *  L  T  Y  L  N  *  Q  G  N  E  K  M  P  *  N  R  K  L  S  I  C  T  W  G  D  V  E  L  I  I  F  *  K  K  R  K  Y  T  T  S  A  *  L  E   </first_frame>
            <second_frame>  S  K  S  L  S  A  L  E  E  R  G  I  P  K  L  D  L  F  T  Q  Y  I  R  T  G  P  D  R  T  G  I  T  T  K  K  E  F  R  R  H  H  G  A  D  S  M  A  N  H  V  A  E  E  K  P  L  R  K  M  A  E  A  F  K  D  L  A  N  T  L  N  S  Q  T  L  D  E  A  A  K  M  E  V  A  P  F  S  H  A  C  T  L  V  S  P  L  F  R  C  L  G  I  A  F  K  F  A  E  L  D  Y  V  A  K  :  V  N  D  L  A  E  A  S  K  S  I  T  T  L  H  T  M  M  D  Q  D  I  Q  A  N  C  V  R  K  A  G  S  H  T  R  N  L  L  R  V  K  R  G  L  D  M  V  K  V  L  F  E  E  I  I  A  S  E :   G  N  S  L  K  D  P  A  S  K  A  Y  T  Q  V  F  A  P  Y  H  G  W  A  I  R  K  A  V  S  A  G  M  Y  A  L  P  T  R  Q  Q  L  M  I  K  L  N  E  D   : E  D  S  A  R  T  Q  M  Q  N  Y  V  A  S  C  D  T  V  I  L  Y  I  D  K  L  F  T  S  R  D  L  G  T  D  W  *  P  *  R  T  G  C  H  N  A  H  S  F  M  *  F  A  P  N  H  L  Y  V  *  S  F  D  A  V  V  Q  I  F  D  C  N  *  L  I  L  T  S  R  E  M  K  K  C  P  R  T  E  N  Y  L  S  A  L  G  A  T  L  S  S  L  F  F  K  K  K  E  N  I  P  L  Q  L  D  S  S  </second_frame>
            <third_frame>   Q  N  H  *  V  H  S  K  R  G  G  F  Q  N  *  I  C  S  R  N  I  S  G  P  D  R  T  G  P  A  L  P  R  K  R  N  S  G  D  I  T  V  L  I  Q  W  R  I  T  *  L  R  K  S  L  L  G  K  W  R  K  L  S  K  T  *  P  T  L  *  I  L  K  P  *  M  K  L  L  R  W  K  *  L  L  S  L  T  L  V  L  W  S  L  L  Y  S  A  A  S  V  S  P  S  S  L  L  S  S  I  T  L  L  R :   *  M  I  *  Q  R  H  Q  S  L  L  Q  R  C  T  Q  *  W  I  K  I  F  K  Q  T  V  *  E  R  Q  V  V  I  Q  G  T  C  *  E  L  S  V  G  W  I  W  L  R  C  C  S  R  R  L  *  P  Q   : R  G  I  P  *  K  I  Q  H  Q  K  H  I  H  K  C  L  L  H  T  M  D  G  P  S  G  K  L  C  L  Q  E  C  M  P  S  P  P  G  N  S  *  *  S  S  L  M  K  M  :  K  T  P  Q  E  R  R  C  K  I  M  S  P  R  V  I  L  S  F  C  T  L  T  N  S  S  R  Q  E  I  W  V  L  I  G  D  H  E  E  L  D  V  I  M  L  I  H  S  C  D  S  P  L  I  T  Y  M  Y  N  H  L  T  Q  W  S  K  Y  L  I  V  T  N  L  S  *  L  A  G  K  *  K  N  A  L  E  Q  K  T  I  Y  L  H  L  G  R  R  *  A  H  Y  F  L  K  K  K  K  I  Y  H  F  S  L  T  R  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27911" stop="27570"/>
                    <exon start="26936" stop="26764"/>
                    <exon start="24072" stop="23927"/>
                    <exon start="23191" stop="23085"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKSLSALEERGIPKLDLFTQYIRTGPDRTGITTKKEFRRHHGADSMANHVAEEKPLRKMAEAFKDLANTLNSQTLDEAAKMEVAPFSHACTLVSPLFRCLGIAFKFAELDYVAKVNDLAEASKSITTLHTMMDQDIQANCVRKAGSHTRNLLRVKRGLDMVKVLFEEIIASEGNSLKDPASKAYTQVFAPYHGWAIRKAVSAGMYALPTRQQLMIKLNEDEDSARTQMQNYVASCDTVILYIDKLFTSRDLGTDW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26944" e_stop="26764"/>
            <exon e_start="24072" e_stop="23724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26944" e_stop="26764" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26763" i_stop="24073" i_length="2691"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="24072" e_stop="23724" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26944" stop="26764"/>
              <exon start="24072" stop="23724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237669" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACCACAGGTGAATGATCTAGCAGAGGCATCAAAGTCTATTACAACGTTGCACACAATGATGGATCAAGATATTCAAGCAAACTGTGTGAGAAAGGCAGGTAGTCATACAAGGAACTTGTTAAGAGTTAAGCGTGGGCTGGATATGGTTAAGGTGTTGTTCGAGGAGATTATAGCCTCAGA : GGGGAATTCCTTGAAAGATCCAGCATCAAAAGCATATACACAAGTGTTTGCTCCATACCATGGATGGGCCATCAGGAAAGCTGTGTCTGCAGGAATGTATGCCCTCCCCACCCGGCAACAGCTGATGATCAAGCTTAATGAAGATGGTGAGTATGCAGTTCAGCTTCTTTACTATACCTCTGACTCAACTAAAAACTCACCTAGTAACATTTTTAGTCTAATGCATCGTTCTGATACATTATTTTTTTATTCTGAAGTGAACTTGGTTTGGCTTTATCCAATCTGTTGAGTAATTTGGTAAAATTCTTAATGACACAATTTGTTTTGGGCTAAAAATGAATTATGAACT</gDNA_template>
            <first_frame> D  H  R  *  M  I  *  Q  R  H  Q  S  L  L  Q  R  C  T  Q  *  W  I  K  I  F  K  Q  T  V  *  E  R  Q  V  V  I  Q  G  T  C  *  E  L  S  V  G  W  I  W  L  R  C  C  S  R  R  L  *  P  Q   : R  G  I  P  *  K  I  Q  H  Q  K  H  I  H  K  C  L  L  H  T  M  D  G  P  S  G  K  L  C  L  Q  E  C  M  P  S  P  P  G  N  S  *  *  S  S  L  M  K  M  V  S  M  Q  F  S  F  F  T  I  P  L  T  Q  L  K  T  H  L  V  T  F  L  V  *  C  I  V  L  I  H  Y  F  F  I  L  K  *  T  W  F  G  F  I  Q  S  V  E  *  F  G  K  I  L  N  D  T  I  C  F  G  L  K  M  N  Y  E   </first_frame>
            <second_frame>  T  T  G  E  *  S  S  R  G  I  K  V  Y  Y  N  V  A  H  N  D  G  S  R  Y  S  S  K  L  C  E  K  G  R  *  S  Y  K  E  L  V  K  S  *  A  W  A  G  Y  G  *  G  V  V  R  G  D  Y  S  L  R  :  G  E  F  L  E  R  S  S  I  K  S  I  Y  T  S  V  C  S  I  P  W  M  G  H  Q  E  S  C  V  C  R  N  V  C  P  P  H  P  A  T  A  D  D  Q  A  *  *  R  W  *  V  C  S  S  A  S  L  L  Y  L  *  L  N  *  K  L  T  *  *  H  F  *  S  N  A  S  F  *  Y  I  I  F  L  F  *  S  E  L  G  L  A  L  S  N  L  L  S  N  L  V  K  F  L  M  T  Q  F  V  L  G  *  K  *  I  M  N  </second_frame>
            <third_frame>   P  Q  V  N  D  L  A  E  A  S  K  S  I  T  T  L  H  T  M  M  D  Q  D  I  Q  A  N  C  V  R  K  A  G  S  H  T  R  N  L  L  R  V  K  R  G  L  D  M  V  K  V  L  F  E  E  I  I  A  S  E :   G  N  S  L  K  D  P  A  S  K  A  Y  T  Q  V  F  A  P  Y  H  G  W  A  I  R  K  A  V  S  A  G  M  Y  A  L  P  T  R  Q  Q  L  M  I  K  L  N  E  D  G  E  Y  A  V  Q  L  L  Y  Y  T  S  D  S  T  K  N  S  P  S  N  I  F  S  L  M  H  R  S  D  T  L  F  F  Y  S  E  V  N  L  V  W  L  Y  P  I  C  *  V  I  W  *  N  S  *  *  H  N  L  F  W  A  K  N  E  L  *  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26942" stop="26764"/>
                    <exon start="24072" stop="23784"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQVNDLAEASKSITTLHTMMDQDIQANCVRKAGSHTRNLLRVKRGLDMVKVLFEEIIASEGNSLKDPASKAYTQVFAPYHGWAIRKAVSAGMYALPTRQQLMIKLNEDGEYAVQLLYYTSDSTKNSPSNIFSLMHRSDTLFFYSEVNLVWLYPIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="52210" PGL_stop="64544"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52210" e_stop="52322"/>
            <exon e_start="52399" e_stop="52567"/>
            <exon e_start="52797" e_stop="52881"/>
            <exon e_start="52971" e_stop="53044"/>
            <exon e_start="53117" e_stop="53236"/>
            <exon e_start="53893" e_stop="54088"/>
            <exon e_start="54208" e_stop="54329"/>
            <exon e_start="54782" e_stop="54989"/>
            <exon e_start="55240" e_stop="55313"/>
            <exon e_start="56582" e_stop="56720"/>
            <exon e_start="57099" e_stop="57280"/>
            <exon e_start="58406" e_stop="58561"/>
            <exon e_start="60627" e_stop="60758"/>
            <exon e_start="61708" e_stop="61766"/>
            <exon e_start="62546" e_stop="62578"/>
            <exon e_start="62671" e_stop="62802"/>
            <exon e_start="64198" e_stop="64544"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.489" acc_prob="0.931" e_score="0.991"/>
          <exon-intron don_prob="0.978" acc_prob="0.946" e_score="0.988"/>
          <exon-intron don_prob="0.966" acc_prob="0.942" e_score="0.988"/>
          <exon-intron don_prob="0.277" acc_prob="0.129" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.916" e_score="0.969"/>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="0.975"/>
          <exon-intron don_prob="0.272" acc_prob="0.995" e_score="0.986"/>
          <exon-intron don_prob="0.981" acc_prob="0.397" e_score="1.000"/>
          <exon-intron don_prob="0.592" acc_prob="0.993" e_score="0.971"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.861" e_score="0.981"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.992"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="0.983"/>
          <exon-intron don_prob="0.980" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="0.992"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="52210" e_stop="52322" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.489" acc_prob="0.931">
            <gDNA_intron_boundary i_start="52323" i_stop="52398" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="52399" e_stop="52567" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.946">
            <gDNA_intron_boundary i_start="52568" i_stop="52796" i_length="229"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="52797" e_stop="52881" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.942">
            <gDNA_intron_boundary i_start="52882" i_stop="52970" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52971" e_stop="53044" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.277" acc_prob="0.129">
            <gDNA_intron_boundary i_start="53045" i_stop="53116" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53117" e_stop="53236" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.933" acc_prob="0.922">
            <gDNA_intron_boundary i_start="53237" i_stop="53892" i_length="656"/>
          </intron>
          <exon e_serial="6" e_score="0.969">
            <gDNA_exon_boundary e_start="53893" e_stop="54088" e_length="196"/>
          </exon>
          <intron i_serial="6" don_prob="0.920" acc_prob="0.916">
            <gDNA_intron_boundary i_start="54089" i_stop="54207" i_length="119"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="54208" e_stop="54329" e_length="122"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="54330" i_stop="54781" i_length="452"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="54782" e_stop="54989" e_length="208"/>
          </exon>
          <intron i_serial="8" don_prob="0.272" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54990" i_stop="55239" i_length="250"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="55240" e_stop="55313" e_length="74"/>
          </exon>
          <intron i_serial="9" don_prob="0.981" acc_prob="0.397">
            <gDNA_intron_boundary i_start="55314" i_stop="56581" i_length="1268"/>
          </intron>
          <exon e_serial="10" e_score="0.971">
            <gDNA_exon_boundary e_start="56582" e_stop="56720" e_length="139"/>
          </exon>
          <intron i_serial="10" don_prob="0.592" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56721" i_stop="57098" i_length="378"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="57099" e_stop="57280" e_length="182"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57281" i_stop="58405" i_length="1125"/>
          </intron>
          <exon e_serial="12" e_score="0.981">
            <gDNA_exon_boundary e_start="58406" e_stop="58561" e_length="156"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.861">
            <gDNA_intron_boundary i_start="58562" i_stop="60626" i_length="2065"/>
          </intron>
          <exon e_serial="13" e_score="0.992">
            <gDNA_exon_boundary e_start="60627" e_stop="60758" e_length="132"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60759" i_stop="61707" i_length="949"/>
          </intron>
          <exon e_serial="14" e_score="0.983">
            <gDNA_exon_boundary e_start="61708" e_stop="61766" e_length="59"/>
          </exon>
          <intron i_serial="14" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61767" i_stop="62545" i_length="779"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="62546" e_stop="62578" e_length="33"/>
          </exon>
          <intron i_serial="15" don_prob="0.980" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62579" i_stop="62670" i_length="92"/>
          </intron>
          <exon e_serial="16" e_score="0.992">
            <gDNA_exon_boundary e_start="62671" e_stop="62802" e_length="132"/>
          </exon>
          <intron i_serial="16" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="62803" i_stop="64197" i_length="1395"/>
          </intron>
          <exon e_serial="17" e_score="0.963">
            <gDNA_exon_boundary e_start="64198" e_stop="64544" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52210" stop="52322"/>
              <exon start="52399" stop="52567"/>
              <exon start="52797" stop="52881"/>
              <exon start="52971" stop="53044"/>
              <exon start="53117" stop="53216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53016" stop="53044"/>
              <exon start="53117" stop="53236"/>
              <exon start="53893" stop="54088"/>
              <exon start="54208" stop="54329"/>
              <exon start="54782" stop="54936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54004" stop="54088"/>
              <exon start="54208" stop="54329"/>
              <exon start="54782" stop="54989"/>
              <exon start="55240" stop="55313"/>
              <exon start="56582" stop="56711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54224" stop="54329"/>
              <exon start="54782" stop="54989"/>
              <exon start="55240" stop="55313"/>
              <exon start="56582" stop="56720"/>
              <exon start="57099" stop="57225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54947" stop="54989"/>
              <exon start="55240" stop="55313"/>
              <exon start="56582" stop="56720"/>
              <exon start="57099" stop="57280"/>
              <exon start="58406" stop="58506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54947" stop="54989"/>
              <exon start="55240" stop="55313"/>
              <exon start="56582" stop="56720"/>
              <exon start="57099" stop="57264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57195" stop="57280"/>
              <exon start="58406" stop="58561"/>
              <exon start="60627" stop="60758"/>
              <exon start="61708" stop="61766"/>
              <exon start="62546" stop="62578"/>
              <exon start="62671" stop="62802"/>
              <exon start="64198" stop="64248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58498" stop="58561"/>
              <exon start="60627" stop="60758"/>
              <exon start="61708" stop="61766"/>
              <exon start="62546" stop="62578"/>
              <exon start="62671" stop="62802"/>
              <exon start="64198" stop="64544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464484" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGATTGCTTTCTCTACGAATAGCCGGAACTGCAGTTGAAGGCACCACATTAAGAATTGAGAAGAAATATTGGGGTGGTGAAGAGGGAAATTCAATTTACCGCTGGTTCCGG : ACTAGTTCAAGTGGAACAAACATAGAAGTCAATGATGAGATGACATCCTCATACAAGCTGTCTATTCATGATATAGGATATTTTATATCTGTATCCTGTGAACCTGTTCGAAATGATTGGGCTCGTGGTCCTATAGTTATCTCGGAACAAGTTGGACCTATCGTTCCAG : GGCCACCGACTTGCCATTCACTTGAATTTCAAGGATCTTTGGTTGAAGGAGAACGTGTGAGCTTTGTTGCTTCTTATAGTGGAGG : GGAGAAGGGAGAATGCATACACGAATGGTTTAGAGTGAATCATGATGGTGGCAAAGACAAAATAAGCTGTGATG : AGTTTCTGGATTTGACTCTTGAGGATGTCAGTAATTGTATAGAGCTTATTTATACTCCCATCCGCAAAGATACATTAAAAGGAAGCTGTAGGAGCATATTGTCTTGCCCAGTCGCTCCTG : GGGACCCAATTGGTGTTGAATTGTCAATTCCTAAATGCTGCGAGGGCGAGACAATAGTTCCCAATCAGAGATACTTTGGAGGGAAAGAAGGTGATAGTGAATATGTTTGGTATCGGAGTAAGAATAAGCTTCATGAATCTGCTCTACTGAACTTGCCTAGCATTACAGAGGATGTACATATTTGTGCAAGAACTTT : ATCATATACGCCATCGCTTGAAGATGTGGGAGCATATTTGTCATTATATTGGTTGCCAATTCGCATTGACGGCAAATCTGGGAACCCATTAGCATCAGTTTGCGAGTCTCCAGTCTCCCCAG : CTTTTCCAGTAGTTTCTAATGTTCATGCAAAGGAGCTCTCATCCAGTAGTTACCTTGGGGAAGGAGAATATTTTGGTGGTCATGAAGGAACAAGCTTATTTAGCTGGTACAGAGAAACTGATGAGGGAACAATCACTCTCATCAATGGAGCATGTTCTAAAACTTATGAAGTTGTAGATGAAGATTACAGTTGTCGTTTACTTTTCGG : ATATACGCCAGTTCGTTCAGATTCAATTATTGGTGAACATCAGTTATCCGAGCCAACTCATGTGATTCTCCCAG : ATATTCCAAGAATTGAGACGGTGGCTCTTACTGGGAAAGCTGTTGAAGGAGATATACTAACTGCTGTTGAAATTATTCCAAAGAGTGAAATTCAAGAGCGTGTATGGGCAAAATATAGGAAGGATATCAAATATACTTG : GTTCATTTCGACTGAAACAGGAAATAATAAGTCCTTTGAGCCATTACCATCACAACGTTCTTGCTCATACAGGTTACGATTTGAGGACATAGGTCGCTCTCTTAGATGTGAATGCATCGTGTCTGATGTTTTTGGAAGGTCAAGTGATCCAGTGTATGCTGAAACTCCTTCAGTTTCACCAG : GTATCCCTCGGATGGATAAGCTGGACATTGAAGGAAGAGGTTTTCACACCAATCTGTATGCTGTTCGTGGCGTTTATAGTGGCGGAAAGGAGGGCAAAAGCAAAATTCAGTGGCTTAGATCCATGGTTGGAAGTCCTGACCTCATCTCCATTCCTG : GGGAGACAGGAAGAATGTATGAAGCTAATGTTGATGACGTGGGTTATAGGCTGGTCGTGATATATACACCAGTAAGAGAAGACGGAGTTGAGGGGCATCCTGTTTCTGCTTCTACAGATCCAATTGCAATTG : AGCCTGATGTTCTTAAAGAAGTAAAGCAGAAGCTTGAGACTGGTTCTGTAAAGTTTGAG : GCCTTGTGTGACAAGGATCAATCTACAAAGAAA : GTTCCAGCTATGGGGAATCTTGAAAGAAGAATTCTGGAAGTCAACAAAAAGAGGGTAAAGGTGGTGAAGCCTGGTTCTAAGACTTCTTTTCCCACAACTGAGGTTCGAGGAACATATGCCCCTCCATTCCAC : GTGGAGCTGTTCCGAAATGATCAACACCGGTTGAGGATTGTGGTGGACAGTGAGAGTGAAGTGGATTTGCTGGTACAGACTCGGCACCTCCGTGATATCGTCGTCCTTGTCATCCGAGGTCTTGCACAGAGGTTTAACAGCACCTCACTCAATTCCCTTCTCAAGATAGAGAATTAGCATCATATCATGTTCCTTGTTATGTACATTAGTTGGTCTTTTTCTGTCTCTAACTCCAGTAGTTTGGTGTTGATTTTTGTTTCTGTTTTCTGGTGAGGTATTGAGTTTCATCTGGCTATGCATTTTGCTTCTTTCATTTGTTTCTTATTATGCCTATGTAAGTCAGCTTG</gDNA_template>
            <first_frame> Q  D  C  F  L  Y  E  *  P  E  L  Q  L  K  A  P  H  *  E  L  R  R  N  I  G  V  V  K  R  E  I  Q  F  T  A  G  S  G :   L  V  Q  V  E  Q  T  *  K  S  M  M  R  *  H  P  H  T  S  C  L  F  M  I  *  D  I  L  Y  L  Y  P  V  N  L  F  E  M  I  G  L  V  V  L  *  L  S  R  N  K  L  D  L  S  F  Q  :  G  H  R  L  A  I  H  L  N  F  K  D  L  W  L  K  E  N  V  *  A  L  L  L  L  I  V  E   : G  R  R  E  N  A  Y  T  N  G  L  E  *  I  M  M  V  A  K  T  K  *  A  V  M  :  S  F  W  I  *  L  L  R  M  S  V  I  V  *  S  L  F  I  L  P  S  A  K  I  H  *  K  E  A  V  G  A  Y  C  L  A  Q  S  L  L  :  G  T  Q  L  V  L  N  C  Q  F  L  N  A  A  R  A  R  Q  *  F  P  I  R  D  T  L  E  G  K  K  V  I  V  N  M  F  G  I  G  V  R  I  S  F  M  N  L  L  Y  *  T  C  L  A  L  Q  R  M  Y  I  F  V  Q  E  L   : Y  H  I  R  H  R  L  K  M  W  E  H  I  C  H  Y  I  G  C  Q  F  A  L  T  A  N  L  G  T  H  *  H  Q  F  A  S  L  Q  S  P  Q  :  L  F  Q  *  F  L  M  F  M  Q  R  S  S  H  P  V  V  T  L  G  K  E  N  I  L  V  V  M  K  E  Q  A  Y  L  A  G  T  E  K  L  M  R  E  Q  S  L  S  S  M  E  H  V  L  K  L  M  K  L  *  M  K  I  T  V  V  V  Y  F  S   : D  I  R  Q  F  V  Q  I  Q  L  L  V  N  I  S  Y  P  S  Q  L  M  *  F  S  Q  :  I  F  Q  E  L  R  R  W  L  L  L  G  K  L  L  K  E  I  Y  *  L  L  L  K  L  F  Q  R  V  K  F  K  S  V  Y  G  Q  N  I  G  R  I  S  N  I  L   : G  S  F  R  L  K  Q  E  I  I  S  P  L  S  H  Y  H  H  N  V  L  A  H  T  G  Y  D  L  R  T  *  V  A  L  L  D  V  N  A  S  C  L  M  F  L  E  G  Q  V  I  Q  C  M  L  K  L  L  Q  F  H  Q  :  V  S  L  G  W  I  S  W  T  L  K  E  E  V  F  T  P  I  C  M  L  F  V  A  F  I  V  A  E  R  R  A  K  A  K  F  S  G  L  D  P  W  L  E  V  L  T  S  S  P  F  L  :  G  R  Q  E  E  C  M  K  L  M  L  M  T  W  V  I  G  W  S  *  Y  I  H  Q  *  E  K  T  E  L  R  G  I  L  F  L  L  L  Q  I  Q  L  Q  L  :  S  L  M  F  L  K  K  *  S  R  S  L  R  L  V  L  *  S  L  R :   P  C  V  T  R  I  N  L  Q  R  K :   F  Q  L  W  G  I  L  K  E  E  F  W  K  S  T  K  R  G  *  R  W  *  S  L  V  L  R  L  L  F  P  Q  L  R  F  E  E  H  M  P  L  H  S  T :   W  S  C  S  E  M  I  N  T  G  *  G  L  W  W  T  V  R  V  K  W  I  C  W  Y  R  L  G  T  S  V  I  S  S  S  L  S  S  E  V  L  H  R  G  L  T  A  P  H  S  I  P  F  S  R  *  R  I  S  I  I  S  C  S  L  L  C  T  L  V  G  L  F  L  S  L  T  P  V  V  W  C  *  F  L  F  L  F  S  G  E  V  L  S  F  I  W  L  C  I  L  L  L  S  F  V  S  Y  Y  A  Y  V  S  Q  L  </first_frame>
            <second_frame>  K  I  A  F  S  T  N  S  R  N  C  S  *  R  H  H  I  K  N  *  E  E  I  L  G  W  *  R  G  K  F  N  L  P  L  V  P   : D  *  F  K  W  N  K  H  R  S  Q  *  *  D  D  I  L  I  Q  A  V  Y  S  *  Y  R  I  F  Y  I  C  I  L  *  T  C  S  K  *  L  G  S  W  S  Y  S  Y  L  G  T  S  W  T  Y  R  S  R :   A  T  D  L  P  F  T  *  I  S  R  I  F  G  *  R  R  T  C  E  L  C  C  F  L  *  W  R  :  G  E  G  R  M  H  T  R  M  V  *  S  E  S  *  W  W  Q  R  Q  N  K  L  *  * :   V  S  G  F  D  S  *  G  C  Q  *  L  Y  R  A  Y  L  Y  S  H  P  Q  R  Y  I  K  R  K  L  *  E  H  I  V  L  P  S  R  S  W :   G  P  N  W  C  *  I  V  N  S  *  M  L  R  G  R  D  N  S  S  Q  S  E  I  L  W  R  E  R  R  *  *  *  I  C  L  V  S  E  *  E  *  A  S  *  I  C  S  T  E  L  A  *  H  Y  R  G  C  T  Y  L  C  K  N  F  :  I  I  Y  A  I  A  *  R  C  G  S  I  F  V  I  I  L  V  A  N  S  H  *  R  Q  I  W  E  P  I  S  I  S  L  R  V  S  S  L  P  S :   F  S  S  S  F  *  C  S  C  K  G  A  L  I  Q  *  L  P  W  G  R  R  I  F  W  W  S  *  R  N  K  L  I  *  L  V  Q  R  N  *  *  G  N  N  H  S  H  Q  W  S  M  F  *  N  L  *  S  C  R  *  R  L  Q  L  S  F  T  F  R  :  I  Y  A  S  S  F  R  F  N  Y  W  *  T  S  V  I  R  A  N  S  C  D  S  P  R :   Y  S  K  N  *  D  G  G  S  Y  W  E  S  C  *  R  R  Y  T  N  C  C  *  N  Y  S  K  E  *  N  S  R  A  C  M  G  K  I  *  E  G  Y  Q  I  Y  L  :  V  H  F  D  *  N  R  K  *  *  V  L  *  A  I  T  I  T  T  F  L  L  I  Q  V  T  I  *  G  H  R  S  L  S  *  M  *  M  H  R  V  *  C  F  W  K  V  K  *  S  S  V  C  *  N  S  F  S  F  T  R :   Y  P  S  D  G  *  A  G  H  *  R  K  R  F  S  H  Q  S  V  C  C  S  W  R  L  *  W  R  K  G  G  Q  K  Q  N  S  V  A  *  I  H  G  W  K  S  *  P  H  L  H  S  W :   G  D  R  K  N  V  *  S  *  C  *  *  R  G  L  *  A  G  R  D  I  Y  T  S  K  R  R  R  S  *  G  A  S  C  F  C  F  Y  R  S  N  C  N  * :   A  *  C  S  *  R  S  K  A  E  A  *  D  W  F  C  K  V  *   : G  L  V  *  Q  G  S  I  Y  K  E   : S  S  S  Y  G  E  S  *  K  K  N  S  G  S  Q  Q  K  E  G  K  G  G  E  A  W  F  *  D  F  F  S  H  N  *  G  S  R  N  I  C  P  S  I  P   : R  G  A  V  P  K  *  S  T  P  V  E  D  C  G  G  Q  *  E  *  S  G  F  A  G  T  D  S  A  P  P  *  Y  R  R  P  C  H  P  R  S  C  T  E  V  *  Q  H  L  T  Q  F  P  S  Q  D  R  E  L  A  S  Y  H  V  P  C  Y  V  H  *  L  V  F  F  C  L  *  L  Q  *  F  G  V  D  F  C  F  C  F  L  V  R  Y  *  V  S  S  G  Y  A  F  C  F  F  H  L  F  L  I  M  P  M  *  V  S  L </second_frame>
            <third_frame>   R  L  L  S  L  R  I  A  G  T  A  V  E  G  T  T  L  R  I  E  K  K  Y  W  G  G  E  E  G  N  S  I  Y  R  W  F  R  :  T  S  S  S  G  T  N  I  E  V  N  D  E  M  T  S  S  Y  K  L  S  I  H  D  I  G  Y  F  I  S  V  S  C  E  P  V  R  N  D  W  A  R  G  P  I  V  I  S  E  Q  V  G  P  I  V  P   : G  P  P  T  C  H  S  L  E  F  Q  G  S  L  V  E  G  E  R  V  S  F  V  A  S  Y  S  G  G :   E  K  G  E  C  I  H  E  W  F  R  V  N  H  D  G  G  K  D  K  I  S  C  D   : E  F  L  D  L  T  L  E  D  V  S  N  C  I  E  L  I  Y  T  P  I  R  K  D  T  L  K  G  S  C  R  S  I  L  S  C  P  V  A  P   : G  D  P  I  G  V  E  L  S  I  P  K  C  C  E  G  E  T  I  V  P  N  Q  R  Y  F  G  G  K  E  G  D  S  E  Y  V  W  Y  R  S  K  N  K  L  H  E  S  A  L  L  N  L  P  S  I  T  E  D  V  H  I  C  A  R  T  L :   S  Y  T  P  S  L  E  D  V  G  A  Y  L  S  L  Y  W  L  P  I  R  I  D  G  K  S  G  N  P  L  A  S  V  C  E  S  P  V  S  P   : A  F  P  V  V  S  N  V  H  A  K  E  L  S  S  S  S  Y  L  G  E  G  E  Y  F  G  G  H  E  G  T  S  L  F  S  W  Y  R  E  T  D  E  G  T  I  T  L  I  N  G  A  C  S  K  T  Y  E  V  V  D  E  D  Y  S  C  R  L  L  F  G :   Y  T  P  V  R  S  D  S  I  I  G  E  H  Q  L  S  E  P  T  H  V  I  L  P   : D  I  P  R  I  E  T  V  A  L  T  G  K  A  V  E  G  D  I  L  T  A  V  E  I  I  P  K  S  E  I  Q  E  R  V  W  A  K  Y  R  K  D  I  K  Y  T  W :   F  I  S  T  E  T  G  N  N  K  S  F  E  P  L  P  S  Q  R  S  C  S  Y  R  L  R  F  E  D  I  G  R  S  L  R  C  E  C  I  V  S  D  V  F  G  R  S  S  D  P  V  Y  A  E  T  P  S  V  S  P   : G  I  P  R  M  D  K  L  D  I  E  G  R  G  F  H  T  N  L  Y  A  V  R  G  V  Y  S  G  G  K  E  G  K  S  K  I  Q  W  L  R  S  M  V  G  S  P  D  L  I  S  I  P   : G  E  T  G  R  M  Y  E  A  N  V  D  D  V  G  Y  R  L  V  V  I  Y  T  P  V  R  E  D  G  V  E  G  H  P  V  S  A  S  T  D  P  I  A  I   : E  P  D  V  L  K  E  V  K  Q  K  L  E  T  G  S  V  K  F  E  :  A  L  C  D  K  D  Q  S  T  K  K  :  V  P  A  M  G  N  L  E  R  R  I  L  E  V  N  K  K  R  V  K  V  V  K  P  G  S  K  T  S  F  P  T  T  E  V  R  G  T  Y  A  P  P  F  H  :  V  E  L  F  R  N  D  Q  H  R  L  R  I  V  V  D  S  E  S  E  V  D  L  L  V  Q  T  R  H  L  R  D  I  V  V  L  V  I  R  G  L  A  Q  R  F  N  S  T  S  L  N  S  L  L  K  I  E  N  *  H  H  I  M  F  L  V  M  Y  I  S  W  S  F  S  V  S  N  S  S  S  L  V  L  I  F  V  S  V  F  W  *  G  I  E  F  H  L  A  M  H  F  A  S  F  I  C  F  L  L  C  L  C  K  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52212" stop="52322"/>
                    <exon start="52399" stop="52567"/>
                    <exon start="52797" stop="52881"/>
                    <exon start="52971" stop="53044"/>
                    <exon start="53117" stop="53236"/>
                    <exon start="53893" stop="54088"/>
                    <exon start="54208" stop="54329"/>
                    <exon start="54782" stop="54989"/>
                    <exon start="55240" stop="55313"/>
                    <exon start="56582" stop="56720"/>
                    <exon start="57099" stop="57280"/>
                    <exon start="58406" stop="58561"/>
                    <exon start="60627" stop="60758"/>
                    <exon start="61708" stop="61766"/>
                    <exon start="62546" stop="62578"/>
                    <exon start="62671" stop="62802"/>
                    <exon start="64198" stop="64374"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2166</number_coding_nucleotides>
                  <number_encoded_amino_acids>722</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLLSLRIAGTAVEGTTLRIEKKYWGGEEGNSIYRWFRTSSSGTNIEVNDEMTSSYKLSIHDIGYFISVSCEPVRNDWARGPIVISEQVGPIVPGPPTCHSLEFQGSLVEGERVSFVASYSGGEKGECIHEWFRVNHDGGKDKISCDEFLDLTLEDVSNCIELIYTPIRKDTLKGSCRSILSCPVAPGDPIGVELSIPKCCEGETIVPNQRYFGGKEGDSEYVWYRSKNKLHESALLNLPSITEDVHICARTLSYTPSLEDVGAYLSLYWLPIRIDGKSGNPLASVCESPVSPAFPVVSNVHAKELSSSSYLGEGEYFGGHEGTSLFSWYRETDEGTITLINGACSKTYEVVDEDYSCRLLFGYTPVRSDSIIGEHQLSEPTHVILPDIPRIETVALTGKAVEGDILTAVEIIPKSEIQERVWAKYRKDIKYTWFISTETGNNKSFEPLPSQRSCSYRLRFEDIGRSLRCECIVSDVFGRSSDPVYAETPSVSPGIPRMDKLDIEGRGFHTNLYAVRGVYSGGKEGKSKIQWLRSMVGSPDLISIPGETGRMYEANVDDVGYRLVVIYTPVREDGVEGHPVSASTDPIAIEPDVLKEVKQKLETGSVKFEALCDKDQSTKKVPAMGNLERRILEVNKKRVKVVKPGSKTSFPTTEVRGTYAPPFHVELFRNDQHRLRIVVDSESEVDLLVQTRHLRDIVVLVIRGLAQRFNSTSLNSLLKIEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="76278" PGL_stop="71542"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76278" e_stop="75848"/>
            <exon e_start="73216" e_stop="72566"/>
            <exon e_start="72490" e_stop="71542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.970"/>
          <exon-intron don_prob="0.506" acc_prob="0.958" e_score="0.983"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="76278" e_stop="75848" e_length="431"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="75847" i_stop="73217" i_length="2631"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="73216" e_stop="72566" e_length="651"/>
          </exon>
          <intron i_serial="2" don_prob="0.506" acc_prob="0.958">
            <gDNA_intron_boundary i_start="72565" i_stop="72491" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.931">
            <gDNA_exon_boundary e_start="72490" e_stop="71542" e_length="949"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76278" stop="75848"/>
              <exon start="73216" stop="72966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76278" stop="75848"/>
              <exon start="73216" stop="73076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76278" stop="75848"/>
              <exon start="73216" stop="73130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76210" stop="75848"/>
              <exon start="73216" stop="73134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72997" stop="72616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72992" stop="72573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72798" stop="72566"/>
              <exon start="72490" stop="71964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72236" stop="71542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72222" stop="71702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTGAAAGAACATGGGGATAGAAGGTGAAGTACCGGAATCAGGAGGAGGAATCAGGCGAAGAAATTGTGTGTGCACAAAAGACGATTTTCTGCCGGAGGAATCGTTCAAGAGCTGGGGAAATTACACGAATGCGCTGAGGCAAACTCCGACGAGGTTAATCGAACGGGCGTTGACGCGATCGAATGATGAAGCAGAGCTGGAGGCGAAGTCACGGAGTCACCATGAAATGAAGAAGACATTGACATGGTGGGACCTAATATGGTTTGGGATGGGAGCGGTGATTGGAGCAGGAATCTTCGTACTGACGGGGCTTGAAGCGAGCCAGGACGCTGGCCCTGCTGTTGTACTGTCATATGCAGTTTCCGGCGTCTCCGCCTTGCTCTCTGTCTTCTGTTACACTGAGTTTGCCGTTGAGATCCCTGTTGCAG : GTGGTTCATTTGCCTACTTGAGGGTGGAGCTTGGTGACTTTGTGGCCTTCATTGCTGCTGGAAACATCCTTCTTGAATATGTGATTGGTGGTGCTGCAGTGGCTCGTTCATGGACCTCATACTTTGCAACTTTGTTGAACTTCAAGCCTGAAAAATTCCTCATCACGGCTCATGGTTTAGCTAAGGGCTACAACCAACTTGACCCAATCGCTGTTGCGGTCTGCTTCATCATCTGCATCATTGCCATTCGTAGTACGAAAGGCTCTTCTCGTCTCAACTATGTTGCCTCGATCATTCACATTGTGGTGATTGTTTTCATCATCATCTGTGGCCTAATCAAGGCAGATACCAAGAACTACACCCCCTTTACGCCATTTGGAGTTCGTGGCATTTTCAAAGCTTCTGCGGTGTTGTTCTTTGCTTATGTTGGTTTTGATGCTGTTTCGACTATGGCTGAGGAAACTAAGGATCCAGCTCGAGATATCCCCATTGGCCTAGTTGGATCTATGGTGATCACCACTACTGTGTACTGTTTATTGGCTATAACACTCTGTCTTATGCAGCCTTATCAGAGCATTGATCCTAATGCTCCGTTTTCTGTGGCGTTCAAAGCAGTTGGATGGAGTTGGGCGCAATATATTGTAGCTGCAG : GTGCGTTGAAAGGAATGACCTCAGTGTTGCTTGTAGGCGCGGTTGGTCAGGCTCGTTATCTCACACACATTGCGCGGACTCACATGATGCCTCCGTGGTTTTCCTATGTTGATGAAAAAACAGGGACGCCCGTCAATGCCACAGCGGTCATGATGTCTGCTACTGCAATCATCGCCTTCTTCACAAAGCTCGAAATTCTCTCCAATCTCTTGTCGATCTCCACCCTTTTCATCTTCATGCTCGTGGCCCTCGCTCTCCTCGTTCGCCGTTACTATGTGAGTGGTGTGACCACAAACGCAAACCGCAACAAGCTAATTATATGCATATTGCTCATCCTCGGGTCCTCAATCGCCACAGCTGCTTACTGGGGACTTAGTGAGAAAGGATGGATTGGATACTGCTTCACTGTGCCTATTTGGGTTTCAGCAACTGCAGGGATTTGTATTTTCATTCCTCAGGCTCGTAATCCTAAGCTTTGGGGTGTGCCTCTTGTGCCTTGGTTGCCATCATTATCGATAGCTATCAACATTTTCCTACTAGGCTCGATAGATAAAGATTCGTTCATCAGATTTGCTGGCTGGACAGGTTTTCTTTTGGCGTATTACTTCTTTTTCGGGCTGCATGCTTCTTATGACACAGCAAAGGAATTTGAAAAGAGCAAAGGGTGGAAGAACAACATTGAAGAAGGAAAGGGTACTTCTAATGTGGTTGTTAGCAAAGATGTTCCTATTGCTCCTGGTAACTGAATTAGTTGTGTCTAAATGATAGCACAATGTTACGTTCCTAGCTAGTACTCTTATTTTATTTGTCTTGATATATGCCTATGATGTTAGTCCGTTTGTACAGAGTCCGTTTCTAAAGTAGACAAGTAAAAGTTGCTGCATTGTTCTAGTATTGAACATTGTGCAGACTATCTTACGATGGCTTTGTACCCTTCTGGCGTATGCCG</gDNA_template>
            <first_frame> K  V  K  E  H  G  D  R  R  *  S  T  G  I  R  R  R  N  Q  A  K  K  L  C  V  H  K  R  R  F  S  A  G  G  I  V  Q  E  L  G  K  L  H  E  C  A  E  A  N  S  D  E  V  N  R  T  G  V  D  A  I  E  *  *  S  R  A  G  G  E  V  T  E  S  P  *  N  E  E  D  I  D  M  V  G  P  N  M  V  W  D  G  S  G  D  W  S  R  N  L  R  T  D  G  A  *  S  E  P  G  R  W  P  C  C  C  T  V  I  C  S  F  R  R  L  R  L  A  L  C  L  L  L  H  *  V  C  R  *  D  P  C  C  R :   W  F  I  C  L  L  E  G  G  A  W  *  L  C  G  L  H  C  C  W  K  H  P  S  *  I  C  D  W  W  C  C  S  G  S  F  M  D  L  I  L  C  N  F  V  E  L  Q  A  *  K  I  P  H  H  G  S  W  F  S  *  G  L  Q  P  T  *  P  N  R  C  C  G  L  L  H  H  L  H  H  C  H  S  *  Y  E  R  L  F  S  S  Q  L  C  C  L  D  H  S  H  C  G  D  C  F  H  H  H  L  W  P  N  Q  G  R  Y  Q  E  L  H  P  L  Y  A  I  W  S  S  W  H  F  Q  S  F  C  G  V  V  L  C  L  C  W  F  *  C  C  F  D  Y  G  *  G  N  *  G  S  S  S  R  Y  P  H  W  P  S  W  I  Y  G  D  H  H  Y  C  V  L  F  I  G  Y  N  T  L  S  Y  A  A  L  S  E  H  *  S  *  C  S  V  F  C  G  V  Q  S  S  W  M  E  L  G  A  I  Y  C  S  C  R :   C  V  E  R  N  D  L  S  V  A  C  R  R  G  W  S  G  S  L  S  H  T  H  C  A  D  S  H  D  A  S  V  V  F  L  C  *  *  K  N  R  D  A  R  Q  C  H  S  G  H  D  V  C  Y  C  N  H  R  L  L  H  K  A  R  N  S  L  Q  S  L  V  D  L  H  P  F  H  L  H  A  R  G  P  R  S  P  R  S  P  L  L  C  E  W  C  D  H  K  R  K  P  Q  Q  A  N  Y  M  H  I  A  H  P  R  V  L  N  R  H  S  C  L  L  G  T  *  *  E  R  M  D  W  I  L  L  H  C  A  Y  L  G  F  S  N  C  R  D  L  Y  F  H  S  S  G  S  *  S  *  A  L  G  C  A  S  C  A  L  V  A  I  I  I  D  S  Y  Q  H  F  P  T  R  L  D  R  *  R  F  V  H  Q  I  C  W  L  D  R  F  S  F  G  V  L  L  L  F  R  A  A  C  F  L  *  H  S  K  G  I  *  K  E  Q  R  V  E  E  Q  H  *  R  R  K  G  Y  F  *  C  G  C  *  Q  R  C  S  Y  C  S  W  *  L  N  *  L  C  L  N  D  S  T  M  L  R  S  *  L  V  L  L  F  Y  L  S  *  Y  M  P  M  M  L  V  R  L  Y  R  V  R  F  *  S  R  Q  V  K  V  A  A  L  F  *  Y  *  T  L  C  R  L  S  Y  D  G  F  V  P  F  W  R  M  P </first_frame>
            <second_frame>  K  *  K  N  M  G  I  E  G  E  V  P  E  S  G  G  G  I  R  R  R  N  C  V  C  T  K  D  D  F  L  P  E  E  S  F  K  S  W  G  N  Y  T  N  A  L  R  Q  T  P  T  R  L  I  E  R  A  L  T  R  S  N  D  E  A  E  L  E  A  K  S  R  S  H  H  E  M  K  K  T  L  T  W  W  D  L  I  W  F  G  M  G  A  V  I  G  A  G  I  F  V  L  T  G  L  E  A  S  Q  D  A  G  P  A  V  V  L  S  Y  A  V  S  G  V  S  A  L  L  S  V  F  C  Y  T  E  F  A  V  E  I  P  V  A   : G  G  S  F  A  Y  L  R  V  E  L  G  D  F  V  A  F  I  A  A  G  N  I  L  L  E  Y  V  I  G  G  A  A  V  A  R  S  W  T  S  Y  F  A  T  L  L  N  F  K  P  E  K  F  L  I  T  A  H  G  L  A  K  G  Y  N  Q  L  D  P  I  A  V  A  V  C  F  I  I  C  I  I  A  I  R  S  T  K  G  S  S  R  L  N  Y  V  A  S  I  I  H  I  V  V  I  V  F  I  I  I  C  G  L  I  K  A  D  T  K  N  Y  T  P  F  T  P  F  G  V  R  G  I  F  K  A  S  A  V  L  F  F  A  Y  V  G  F  D  A  V  S  T  M  A  E  E  T  K  D  P  A  R  D  I  P  I  G  L  V  G  S  M  V  I  T  T  T  V  Y  C  L  L  A  I  T  L  C  L  M  Q  P  Y  Q  S  I  D  P  N  A  P  F  S  V  A  F  K  A  V  G  W  S  W  A  Q  Y  I  V  A  A   : G  A  L  K  G  M  T  S  V  L  L  V  G  A  V  G  Q  A  R  Y  L  T  H  I  A  R  T  H  M  M  P  P  W  F  S  Y  V  D  E  K  T  G  T  P  V  N  A  T  A  V  M  M  S  A  T  A  I  I  A  F  F  T  K  L  E  I  L  S  N  L  L  S  I  S  T  L  F  I  F  M  L  V  A  L  A  L  L  V  R  R  Y  Y  V  S  G  V  T  T  N  A  N  R  N  K  L  I  I  C  I  L  L  I  L  G  S  S  I  A  T  A  A  Y  W  G  L  S  E  K  G  W  I  G  Y  C  F  T  V  P  I  W  V  S  A  T  A  G  I  C  I  F  I  P  Q  A  R  N  P  K  L  W  G  V  P  L  V  P  W  L  P  S  L  S  I  A  I  N  I  F  L  L  G  S  I  D  K  D  S  F  I  R  F  A  G  W  T  G  F  L  L  A  Y  Y  F  F  F  G  L  H  A  S  Y  D  T  A  K  E  F  E  K  S  K  G  W  K  N  N  I  E  E  G  K  G  T  S  N  V  V  V  S  K  D  V  P  I  A  P  G  N  *  I  S  C  V  *  M  I  A  Q  C  Y  V  P  S  *  Y  S  Y  F  I  C  L  D  I  C  L  *  C  *  S  V  C  T  E  S  V  S  K  V  D  K  *  K  L  L  H  C  S  S  I  E  H  C  A  D  Y  L  T  M  A  L  Y  P  S  G  V  C   </second_frame>
            <third_frame>   S  E  R  T  W  G  *  K  V  K  Y  R  N  Q  E  E  E  S  G  E  E  I  V  C  A  Q  K  T  I  F  C  R  R  N  R  S  R  A  G  E  I  T  R  M  R  *  G  K  L  R  R  G  *  S  N  G  R  *  R  D  R  M  M  K  Q  S  W  R  R  S  H  G  V  T  M  K  *  R  R  H  *  H  G  G  T  *  Y  G  L  G  W  E  R  *  L  E  Q  E  S  S  Y  *  R  G  L  K  R  A  R  T  L  A  L  L  L  Y  C  H  M  Q  F  P  A  S  P  P  C  S  L  S  S  V  T  L  S  L  P  L  R  S  L  L  Q  :  V  V  H  L  P  T  *  G  W  S  L  V  T  L  W  P  S  L  L  L  E  T  S  F  L  N  M  *  L  V  V  L  Q  W  L  V  H  G  P  H  T  L  Q  L  C  *  T  S  S  L  K  N  S  S  S  R  L  M  V  *  L  R  A  T  T  N  L  T  Q  S  L  L  R  S  A  S  S  S  A  S  L  P  F  V  V  R  K  A  L  L  V  S  T  M  L  P  R  S  F  T  L  W  *  L  F  S  S  S  S  V  A  *  S  R  Q  I  P  R  T  T  P  P  L  R  H  L  E  F  V  A  F  S  K  L  L  R  C  C  S  L  L  M  L  V  L  M  L  F  R  L  W  L  R  K  L  R  I  Q  L  E  I  S  P  L  A  *  L  D  L  W  *  S  P  L  L  C  T  V  Y  W  L  *  H  S  V  L  C  S  L  I  R  A  L  I  L  M  L  R  F  L  W  R  S  K  Q  L  D  G  V  G  R  N  I  L  *  L  Q  :  V  R  *  K  E  *  P  Q  C  C  L  *  A  R  L  V  R  L  V  I  S  H  T  L  R  G  L  T  *  C  L  R  G  F  P  M  L  M  K  K  Q  G  R  P  S  M  P  Q  R  S  *  C  L  L  L  Q  S  S  P  S  S  Q  S  S  K  F  S  P  I  S  C  R  S  P  P  F  S  S  S  C  S  W  P  S  L  S  S  F  A  V  T  M  *  V  V  *  P  Q  T  Q  T  A  T  S  *  L  Y  A  Y  C  S  S  S  G  P  Q  S  P  Q  L  L  T  G  D  L  V  R  K  D  G  L  D  T  A  S  L  C  L  F  G  F  Q  Q  L  Q  G  F  V  F  S  F  L  R  L  V  I  L  S  F  G  V  C  L  L  C  L  G  C  H  H  Y  R  *  L  S  T  F  S  Y  *  A  R  *  I  K  I  R  S  S  D  L  L  A  G  Q  V  F  F  W  R  I  T  S  F  S  G  C  M  L  L  M  T  Q  Q  R  N  L  K  R  A  K  G  G  R  T  T  L  K  K  E  R  V  L  L  M  W  L  L  A  K  M  F  L  L  L  L  V  T  E  L  V  V  S  K  *  *  H  N  V  T  F  L  A  S  T  L  I  L  F  V  L  I  Y  A  Y  D  V  S  P  F  V  Q  S  P  F  L  K  *  T  S  K  S  C  C  I  V  L  V  L  N  I  V  Q  T  I  L  R  W  L  C  T  L  L  A  Y  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76271" stop="75848"/>
                    <exon start="73216" stop="72566"/>
                    <exon start="72490" stop="71745"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1818</number_coding_nucleotides>
                  <number_encoded_amino_acids>606</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNMGIEGEVPESGGGIRRRNCVCTKDDFLPEESFKSWGNYTNALRQTPTRLIERALTRSNDEAELEAKSRSHHEMKKTLTWWDLIWFGMGAVIGAGIFVLTGLEASQDAGPAVVLSYAVSGVSALLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFIAAGNILLEYVIGGAAVARSWTSYFATLLNFKPEKFLITAHGLAKGYNQLDPIAVAVCFIICIIAIRSTKGSSRLNYVASIIHIVVIVFIIICGLIKADTKNYTPFTPFGVRGIFKASAVLFFAYVGFDAVSTMAEETKDPARDIPIGLVGSMVITTTVYCLLAITLCLMQPYQSIDPNAPFSVAFKAVGWSWAQYIVAAGALKGMTSVLLVGAVGQARYLTHIARTHMMPPWFSYVDEKTGTPVNATAVMMSATAIIAFFTKLEILSNLLSISTLFIFMLVALALLVRRYYVSGVTTNANRNKLIICILLILGSSIATAAYWGLSEKGWIGYCFTVPIWVSATAGICIFIPQARNPKLWGVPLVPWLPSLSIAINIFLLGSIDKDSFIRFAGWTGFLLAYYFFFGLHASYDTAKEFEKSKGWKNNIEEGKGTSNVVVSKDVPIAPGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="95596" PGL_stop="79423"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80525" e_stop="79423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="80525" e_stop="79423" e_length="1103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80525" stop="80083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80380" stop="79917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80271" stop="79716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79882" stop="79423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79859" stop="79423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79857" stop="79423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357069" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTCAGTGCTGCACGACGGAGAGTTGCCAGTTACTTGGAAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</gDNA_template>
            <first_frame> I  F  V  S  I  I  D  G  D  Y  H  E  R  A  E  D  A  K  D  A  C  K  E  L  S  T  Y  I  D  Y  K  Q  C  E  G  V  A  E  I  V  V  A  P  S  M  S  E  G  F  R  G  I  V  Q  T  M  G  L  G  N  L  K  P  N  I  I  V  M  R  Y  P  E  I  W  R  R  E  N  L  T  D  I  P  A  T  F  V  G  I  I  N  D  C  I  V  A  N  K  A  V  V  I  V  K  G  L  D  E  W  P  N  E  Y  Q  R  Q  Y  G  T  I  D  L  Y  W  I  V  R  D  G  G  L  M  L  L  L  S  Q  L  L  L  T  K  D  S  F  E  G  C  K  I  Q  V  F  C  I  A  E  E  D  S  D  A  E  G  L  K  A  D  V  K  K  F  L  Y  D  L  R  M  Q  A  E  V  I  V  I  S  M  K  S  W  E  A  E  G  E  Q  Q  E  S  V  E  A  F  S  A  A  R  R  R  V  A  S  Y  L  E  E  M  K  E  Q  A  Q  R  D  R  T  P  L  M  A  D  G  K  P  V  F  V  E  E  Q  Q  V  E  K  F  L  Y  T  T  L  K  L  N  L  M  V  Q  K  Y  S  R  M  A  S  V  V  L  V  S  L  P  P  P  P  L  N  H  P  A  T  F  Y  M  E  Y  M  D  L  L  V  E  N  I  P  R  L  L  I  V  R  G  Y  H  K  D  V  V  T  L  F  T  *  F  L  F  M  Y  L  Y  N  F  L  L  L  *  L  R  T  P  N  L  F  A  F  *  H  F  P  F  F  F  Y  C  P  S  Q  P  R  G  V  Y  N  C  I  I  L  Y  I  K  G  H  T  G  P  K  F  C   </first_frame>
            <second_frame>  S  L  S  L  L  S  M  E  T  T  M  N  V  L  R  M  L  R  T  L  A  R  N  *  V  P  I  L  T  T  S  N  V  K  V  *  L  R  L  L  L  P  Q  A  C  L  K  A  F  E  A  L  F  R  L  W  V  S  E  I  S  S  Q  I  *  S  L  C  G  T  L  R  F  G  D  V  K  I  *  L  I  F  L  L  P  L  L  E  *  L  M  T  A  L  L  R  T  R  L  L  S  L  S  R  V  S  T  N  G  L  M  S  T  K  D  S  M  V  P  S  I  Y  T  G  *  *  E  M  V  V  S  C  F  Y  S  L  S  S  S  L  Q  K  I  A  L  K  A  V  R  Y  R  C  S  A  L  Q  R  K  I  L  M  Q  R  D  *  R  L  M  *  R  S  F  F  M  T  S  G  C  K  L  K  L  L  S  F  P  *  S  H  G  K  P  K  G  S  S  K  N  L  S  K  H  S  V  L  H  D  G  E  L  P  V  T  W  K  K  *  K  S  K  H  R  E  T  G  L  R  *  W  L  M  E  S  L  C  L  L  K  N  N  K  *  R  N  S  F  T  P  L  *  S  *  T  *  W  Y  R  N  T  R  E  W  L  P  S  C  L  *  A  Y  L  L  H  L  S  I  I  L  Q  P  S  T  W  N  T  W  I  C  W  L  K  I  Y  Q  D  S  *  L  F  V  D  I  I  K  M  L  S  L  Y  S  R  S  S  C  S  C  T  C  I  I  F  C  C  F  S  *  E  L  P  I  Y  L  P  F  N  I  F  L  F  S  F  T  A  L  H  N  Q  E  G  F  T  I  V  *  F  F  I  L  R  G  T  L  D  Q  N  F  A  </second_frame>
            <third_frame>   L  C  L  Y  Y  R  W  R  L  P  *  T  C  *  G  C  *  G  R  L  Q  G  T  K  Y  L  Y  *  L  Q  A  M  *  R  C  S  *  D  C  C  C  P  K  H  V  *  R  L  S  R  H  C  S  D  Y  G  S  R  K  S  Q  A  K  Y  N  R  Y  A  V  P  *  D  L  A  T  *  K  F  D  *  Y  S  C  Y  L  C  W  N  N  *  *  L  H  C  C  E  Q  G  C  C  H  C  Q  G  S  R  R  M  A  *  *  V  P  K  T  V  W  Y  H  R  F  I  L  D  S  E  R  W  W  S  H  A  S  T  L  S  A  P  P  Y  K  R  *  L  *  R  L  *  D  T  G  V  L  H  C  R  G  R  F  *  C  R  G  I  E  G  *  C  K  E  V  S  L  *  P  P  D  A  S  *  S  Y  C  H  F  H  E  V  M  G  S  R  R  G  A  A  R  I  C  R  S  I  Q  C  C  T  T  E  S  C  Q  L  L  G  R  N  E  R  A  S  T  E  R  P  D  S  V  D  G  *  W  K  A  C  V  C  *  R  T  T  S  R  E  I  P  L  H  H  S  K  A  E  L  N  G  T  E  I  L  E  N  G  F  R  R  A  C  K  L  T  S  S  T  S  Q  S  S  C  N  L  L  H  G  I  H  G  S  A  G  *  K  Y  T  K  T  L  D  C  S  W  I  S  *  R  C  C  H  F  I  H  V  V  L  V  H  V  L  V  *  F  F  V  A  L  A  K  N  S  Q  F  I  C  L  L  T  F  S  F  F  L  L  L  P  F  T  T  K  R  G  L  Q  L  Y  N  S  L  Y  *  G  A  H  W  T  K  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80525" stop="79590"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVSIIDGDYHERAEDAKDACKELSTYIDYKQCEGVAEIVVAPSMSEGFRGIVQTMGLGNLKPNIIVMRYPEIWRRENLTDIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKDSFEGCKIQVFCIAEEDSDAEGLKADVKKFLYDLRMQAEVIVISMKSWEAEGEQQESVEAFSAARRRVASYLEEMKEQAQRDRTPLMADGKPVFVEEQQVEKFLYTTLKLNLMVQKYSRMASVVLVSLPPPPLNHPATFYMEYMDLLVENIPRLLIVRGYHKDVVTLFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="85255" e_stop="85197"/>
            <exon e_start="84562" e_stop="84162"/>
            <exon e_start="83143" e_stop="82982"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.840" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85255" e_stop="85197" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.994">
            <gDNA_intron_boundary i_start="85196" i_stop="84563" i_length="634"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84562" e_stop="84162" e_length="401"/>
          </exon>
          <intron i_serial="2" don_prob="0.840" acc_prob="0.970">
            <gDNA_intron_boundary i_start="84161" i_stop="83144" i_length="1018"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83143" e_stop="82982" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85255" stop="85197"/>
              <exon start="84562" stop="84162"/>
              <exon start="83143" stop="82982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85255" stop="85197"/>
              <exon start="84562" stop="84162"/>
              <exon start="83143" stop="82994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84476" stop="84162"/>
              <exon start="83143" stop="83008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAG : GTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG : TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAG</gDNA_template>
            <first_frame> L  V  S  V  L  L  F  G  A  V  A  T  R  D  K  L  L  T  D  R :   L  L  S  A  T  V  A  W  P  F  P  A  I  V  Y  V  G  I  I  L  S  T  L  G  A  A  L  Q  S  L  T  G  A  P  R  L  L  A  A  I  A  N  D  E  I  L  P  V  L  N  Y  F  K  V  A  D  G  H  E  P  H  V  A  T  L  F  T  A  I  I  C  I  G  C  V  V  I  G  N  L  D  L  V  S  P  T  T  T  M  F  Y  L  V  C  Y  A  G  V  N  L  S  C  F  L  L  D  L  L  D  A  P  S  W  R  P  R  W  K  F  H  H  W  S  L  S  L  V  G  A  L  L  C  I   : V  T  M  F  L  I  S  W  A  F  T  I  V  S  L  A  L  A  S  L  I  Y  Y  Y  V  S  I  K  G  K  A  G  D  W  G  D  G  F  K  S  A  Y  F  Q  L  A  L  R  S  L  R  S  L  G  </first_frame>
            <second_frame>  W  F  L  C  Y  Y  S  E  L  L  Q  L  E  I  S  F  *  L  I   : G  Y  Y  L  L  Q  L  P  G  H  F  R  L  L  F  M  L  V  *  S  S  Q  P  W  G  Q  P  F  K  A  L  L  V  L  H  V  S  L  Q  R  L  Q  M  M  K  F  Y  L  F  L  T  I  L  K  W  Q  M  D  M  S  L  M  W  L  L  S  S  L  P  S  S  A  L  V  V  L  *  S  G  I  *  I  L  S  H  L  L  Q  Q  C  F  T  S  Y  A  M  L  A  *  T  Y  P  A  S  F  W  I  C  *  M  L  P  A  G  D  L  G  G  N  F  T  T  G  A  S  L  L  L  E  H  Y  F  V  *  :  *  P  C  F  *  F  P  G  H  S  P  L  Y  H  L  P  *  Q  A  S  Y  I  I  T  L  V  *  R  G  K  Q  E  T  G  V  T  V  L  R  V  R  I  F  S  L  L  F  A  V  C  D  L  W  E </second_frame>
            <third_frame>   G  F  C  A  T  I  R  S  C  C  N  *  R  *  A  F  D  *  *  :  V  I  I  C  Y  S  C  L  A  I  S  G  Y  C  L  C  W  Y  N  P  L  N  L  G  G  S  P  S  K  P  Y  W  C  S  T  S  P  C  S  D  C  K  *  *  N  S  T  C  S  *  L  F  *  S  G  R  W  T  *  A  S  C  G  Y  S  L  H  C  H  H  L  H  W  L  C  C  N  R  E  S  R  S  C  L  T  Y  Y  N  N  V  L  P  R  M  L  C  W  R  E  L  I  L  L  P  S  G  S  V  R  C  S  Q  L  A  T  S  V  E  I  S  P  L  E  P  L  S  C  W  S  I  T  L  Y  S :   D  H  V  F  D  F  L  G  I  H  H  C  I  T  C  P  S  K  P  H  I  L  L  R  *  Y  K  G  E  S  R  R  L  G  *  R  F  *  E  C  V  F  S  A  C  S  S  Q  F  A  I  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85255" stop="85197"/>
                    <exon start="84562" stop="84162"/>
                    <exon start="83143" stop="82983"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSVLLFGAVATRDKLLTDRLLSATVAWPFPAIVYVGIILSTLGAALQSLTGAPRLLAAIANDEILPVLNYFKVADGHEPHVATLFTAIICIGCVVIGNLDLVSPTTTMFYLVCYAGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLVGALLCIVTMFLISWAFTIVSLALASLIYYYVSIKGKAGDWGDGFKSAYFQLALRSLRSLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="95596" e_stop="95345"/>
            <exon e_start="93388" e_stop="93242"/>
            <exon e_start="91206" e_stop="91128"/>
            <exon e_start="79772" e_stop="79514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95596" e_stop="95345" e_length="252"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="95344" i_stop="93389" i_length="1956"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93388" e_stop="93242" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93241" i_stop="91207" i_length="2035"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91206" e_stop="91128" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91127" i_stop="79773" i_length="11355"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="79772" e_stop="79514" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95596" stop="95345"/>
              <exon start="93388" stop="93242"/>
              <exon start="91206" stop="91128"/>
              <exon start="79772" stop="79514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAA : GAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAG : TATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAG : CTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTC</gDNA_template>
            <first_frame> *  I  A  A  *  K  P  L  F  S  R  L  T  L  S  G  L  G  S  S  D  L  T  A  L  N  S  G  G  N  G  R  W  R  R  D  *  D  C  G  G  K  *  V  P  F  S  Y  W  T  K  I  Q  S  S  G  G  A  *  Q  *  *  C  S  Y  *  D  V  F  C  S  S  R  I  F  L  F  S  P  Q  P  R  S  Q  :  E  R  Q  S  R  C  P  S  K  Y  G  I  *  R  K  R  R  V  I  I  Q  S  *  *  Q  W  S  S  K  R  I  Q  T  G  I  I  W  L  *  F  S  S  K  Y  S  R  S  Q  E  :  Y  D  R  G  S  N  S  R  T  V  *  S  K  R  W  *  G  Y  N  S  H  A  *  A  T  *   : A  E  L  N  G  T  E  I  L  E  N  G  F  R  R  A  C  K  L  T  S  S  T  S  Q  S  S  C  N  L  L  H  G  I  H  G  S  A  G  *  K  Y  T  K  T  L  D  C  S  W  I  S  *  R  C  C  H  F  I  H  V  V  L  V  H  V  L  V  *  F  F  V  A  L  A  K  N  S  Q  F  I  C  L  L  T  F   </first_frame>
            <second_frame>  E  S  Q  L  K  N  P  F  S  R  G  *  H  F  P  V  W  V  V  Q  T  *  L  L  *  I  R  E  A  M  E  G  G  E  E  I  E  I  A  E  E  N  E  F  P  S  V  I  G  R  K  Y  S  P  V  V  A  H  D  N  D  S  A  V  I  E  M  S  S  V  R  P  G  S  S  S  S  L  P  N  H  D  L  K :   N  V  K  V  G  V  H  P  N  M  A  S  E  E  R  D  E  S  L  S  N  H  S  S  N  G  P  Q  R  E  S  K  L  E  L  F  G  F  D  S  L  V  N  I  L  G  L  K  S :   M  T  G  D  Q  I  P  A  P  S  S  P  R  D  G  E  D  I  T  L  T  L  E  Q  P  K  :  L  N  L  M  V  Q  K  Y  S  R  M  A  S  V  V  L  V  S  L  P  P  P  P  L  N  H  P  A  T  F  Y  M  E  Y  M  D  L  L  V  E  N  I  P  R  L  L  I  V  R  G  Y  H  K  D  V  V  T  L  F  T  *  F  L  F  M  Y  L  Y  N  F  L  L  L  *  L  R  T  P  N  L  F  A  F  *  H  F  </second_frame>
            <third_frame>   N  R  S  L  K  T  P  F  L  A  V  N  T  F  R  F  G  *  F  R  L  D  C  F  E  F  G  R  Q  W  K  V  E  K  R  L  R  L  R  R  K  M  S  S  L  Q  L  L  D  E  N  T  V  Q  W  W  R  M  T  M  I  V  Q  L  L  R  C  L  L  F  V  P  D  L  P  L  L  S  P  T  T  I  S   : R  T  S  K  *  V  S  I  Q  I  W  H  L  K  K  E  T  S  H  Y  P  I  I  V  A  M  V  L  K  E  N  P  N  W  N  Y  L  A  L  I  L  *  *  I  F  *  V  S  R   : V  *  Q  G  I  K  F  P  H  R  L  V  Q  E  M  V  R  I  *  L  S  R  L  S  N  L  S :   *  T  *  W  Y  R  N  T  R  E  W  L  P  S  C  L  *  A  Y  L  L  H  L  S  I  I  L  Q  P  S  T  W  N  T  W  I  C  W  L  K  I  Y  Q  D  S  *  L  F  V  D  I  I  K  M  L  S  L  Y  S  R  S  S  C  S  C  T  C  I  I  F  C  C  F  S  *  E  L  P  I  Y  L  P  F  N  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95520" stop="95345"/>
                    <exon start="93388" stop="93242"/>
                    <exon start="91206" stop="91128"/>
                    <exon start="79772" stop="79590"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IREAMEGGEEIEIAEENEFPSVIGRKYSPVVAHDNDSAVIEMSSVRPGSSSSLPNHDLKNVKVGVHPNMASEERDESLSNHSSNGPQRESKLELFGFDSLVNILGLKSMTGDQIPAPSSPRDGEDITLTLEQPKLNLMVQKYSRMASVVLVSLPPPPLNHPATFYMEYMDLLVENIPRLLIVRGYHKDVVTLFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="99464" PGL_stop="104312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99464" e_stop="99700"/>
            <exon e_start="102496" e_stop="102632"/>
            <exon e_start="103495" e_stop="103684"/>
            <exon e_start="104282" e_stop="104312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.916"/>
          <exon-intron don_prob="0.960" acc_prob="0.960" e_score="0.978"/>
          <exon-intron don_prob="0.323" acc_prob="0.840" e_score="0.984"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="99464" e_stop="99700" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="99701" i_stop="102495" i_length="2795"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="102496" e_stop="102632" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.960">
            <gDNA_intron_boundary i_start="102633" i_stop="103494" i_length="862"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="103495" e_stop="103684" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.323" acc_prob="0.840">
            <gDNA_intron_boundary i_start="103685" i_stop="104281" i_length="597"/>
          </intron>
          <exon e_serial="4" e_score="0.935">
            <gDNA_exon_boundary e_start="104282" e_stop="104312" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99464" stop="99700"/>
              <exon start="102496" stop="102632"/>
              <exon start="103495" stop="103684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99470" stop="99700"/>
              <exon start="102496" stop="102632"/>
              <exon start="103495" stop="103684"/>
              <exon start="104282" stop="104312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437854" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCGTCGTCGAGCACTCTATTCCTCCGACTTAACTCCGGTGACCGTGCTTTTTTCACAAAATCAAACTTAAAGGAGAGAGATTACAGAAATTCTTGCAGAAAATGAATCTCAATAGTAGCCGGGATGACTACAAGTTCCTTCAAATAGTAGATGCCAGGGCTGCACTTGGCCAGAAAGTTAATCTCATCGGCGTCGTTGTCGAAACCGGTCTTCCCAAGAAATCCAGGGGCACGG : ATGTCTTTTGCTCCATTAGGATCATTGATGAGTCCTACCCAAGCCCAGGGATTGCAGTTAATTTTTTTGCCGAAACTATGGATAAGCTTCCTGAAGTGCTGACTGTTGGTGATATACTTCAGATCTCTCAAGTTGTG : ATGAAAACTCATGGACCCGATATTTATGCTTTGTTCAACAAGAAGTTCTCTTCATTTGCAATATTTGACGGAAAGAATGATTCAAATATCCTCCCTTATCAATGTTCTTCTAAGTACCATGCTAGAGAGCAAGACAAGAAATTTATACTGGGTTTGATGAAGTGGTTGGTTGATCACAAGATCGATACAG : ATTTGACTGATTTACATTCATTGAAAGAGAT</gDNA_template>
            <first_frame> I  S  S  S  S  T  L  F  L  R  L  N  S  G  D  R  A  F  F  T  K  S  N  L  K  E  R  D  Y  R  N  S  C  R  K  *  I  S  I  V  A  G  M  T  T  S  S  F  K  *  *  M  P  G  L  H  L  A  R  K  L  I  S  S  A  S  L  S  K  P  V  F  P  R  N  P  G  A  R  :  M  S  F  A  P  L  G  S  L  M  S  P  T  Q  A  Q  G  L  Q  L  I  F  L  P  K  L  W  I  S  F  L  K  C  *  L  L  V  I  Y  F  R  S  L  K  L  * :   *  K  L  M  D  P  I  F  M  L  C  S  T  R  S  S  L  H  L  Q  Y  L  T  E  R  M  I  Q  I  S  S  L  I  N  V  L  L  S  T  M  L  E  S  K  T  R  N  L  Y  W  V  *  *  S  G  W  L  I  T  R  S  I  Q  :  I  *  L  I  Y  I  H  *  K  R  </first_frame>
            <second_frame>  F  R  R  R  A  L  Y  S  S  D  L  T  P  V  T  V  L  F  S  Q  N  Q  T  *  R  R  E  I  T  E  I  L  A  E  N  E  S  Q  *  *  P  G  *  L  Q  V  P  S  N  S  R  C  Q  G  C  T  W  P  E  S  *  S  H  R  R  R  C  R  N  R  S  S  Q  E  I  Q  G  H  G :   C  L  L  L  H  *  D  H  *  *  V  L  P  K  P  R  D  C  S  *  F  F  C  R  N  Y  G  *  A  S  *  S  A  D  C  W  *  Y  T  S  D  L  S  S  C   : D  E  N  S  W  T  R  Y  L  C  F  V  Q  Q  E  V  L  F  I  C  N  I  *  R  K  E  *  F  K  Y  P  P  L  S  M  F  F  *  V  P  C  *  R  A  R  Q  E  I  Y  T  G  F  D  E  V  V  G  *  S  Q  D  R  Y  R :   F  D  *  F  T  F  I  E  R  D </second_frame>
            <third_frame>   F  V  V  E  H  S  I  P  P  T  *  L  R  *  P  C  F  F  H  K  I  K  L  K  G  E  R  L  Q  K  F  L  Q  K  M  N  L  N  S  S  R  D  D  Y  K  F  L  Q  I  V  D  A  R  A  A  L  G  Q  K  V  N  L  I  G  V  V  V  E  T  G  L  P  K  K  S  R  G  T   : D  V  F  C  S  I  R  I  I  D  E  S  Y  P  S  P  G  I  A  V  N  F  F  A  E  T  M  D  K  L  P  E  V  L  T  V  G  D  I  L  Q  I  S  Q  V  V  :  M  K  T  H  G  P  D  I  Y  A  L  F  N  K  K  F  S  S  F  A  I  F  D  G  K  N  D  S  N  I  L  P  Y  Q  C  S  S  K  Y  H  A  R  E  Q  D  K  K  F  I  L  G  L  M  K  W  L  V  D  H  K  I  D  T   : D  L  T  D  L  H  S  L  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99508" stop="99700"/>
                    <exon start="102496" stop="102632"/>
                    <exon start="103495" stop="103684"/>
                    <exon start="104282" stop="104310"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCFFHKIKLKGERLQKFLQKMNLNSSRDDYKFLQIVDARAALGQKVNLIGVVVETGLPKKSRGTDVFCSIRIIDESYPSPGIAVNFFAETMDKLPEVLTVGDILQISQVVMKTHGPDIYALFNKKFSSFAIFDGKNDSNILPYQCSSKYHAREQDKKFILGLMKWLVDHKIDTDLTDLHSLKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="106563" PGL_stop="108967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106563" e_stop="106611"/>
            <exon e_start="107613" e_stop="107765"/>
            <exon e_start="108238" e_stop="108544"/>
            <exon e_start="108875" e_stop="108967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="0.980"/>
          <exon-intron don_prob="0.973" acc_prob="0.794" e_score="0.987"/>
          <exon-intron don_prob="0.376" acc_prob="0.000" e_score="0.928"/>
          <exon-only e_score="0.849"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="106563" e_stop="106611" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106612" i_stop="107612" i_length="1001"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="107613" e_stop="107765" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.794">
            <gDNA_intron_boundary i_start="107766" i_stop="108237" i_length="472"/>
          </intron>
          <exon e_serial="3" e_score="0.928">
            <gDNA_exon_boundary e_start="108238" e_stop="108544" e_length="307"/>
          </exon>
          <intron i_serial="3" don_prob="0.376" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108545" i_stop="108874" i_length="330"/>
          </intron>
          <exon e_serial="4" e_score="0.849">
            <gDNA_exon_boundary e_start="108875" e_stop="108967" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106563" stop="106611"/>
              <exon start="107613" stop="107765"/>
              <exon start="108238" stop="108544"/>
              <exon start="108875" stop="108913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107731" stop="107765"/>
              <exon start="108238" stop="108544"/>
              <exon start="108875" stop="108967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107731" stop="107765"/>
              <exon start="108238" stop="108544"/>
              <exon start="108875" stop="108967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462753" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTAATGTACCTTTTGTCTCCTTGATGAGAGCTCTGGCTAATCCAAAG : GTCATAGGTAAATTCCACTGTGTAGTTCGAGTGGTAGCGGCATTTCCTTGGCTAGCTGAACATTTCCGTTCCCCTTCTGGGGTTTATAGGATCAGGTTGACCCTAGAGGATCCAACTACAAGAATCCATGCATATCTGTATAAAGAGGATGCG : GAAAAGTTTTTTGACGGCTACCCCTCTGTTTATACATTAACAAAAAAGAGGAATTTGTTGCTTGGAACTTCTGAAGGCGATGATGATAGTGAAATGAATGATCATTTTAGAAATCCACCCTGGATAAGGTGTTGCTTAATGTCTTACCATATCGATGACAATGATGTCTGGGGAAGTAGGAACTTTCGAATTTTTGCTACCACCCTGAAAGCATAGGAGATCGTCCATTCTGTAAGCCTACAGTGCTTCCAATTAATGTTATGCAGTTTGGCCTCTTCTTCAAATGTACCTAGACAGTTGCTAGCAA : GTAGCTTAGAATGACCATAACCTATTTTCTTTTGCTTGTGTAGATGTTATCATCCTTGCACACAAATAGGTTTGCTTTCATGTAGTGAAAGAA</gDNA_template>
            <first_frame> P  *  C  T  F  C  L  L  D  E  S  S  G  *  S  K   : G  H  R  *  I  P  L  C  S  S  S  G  S  G  I  S  L  A  S  *  T  F  P  F  P  F  W  G  L  *  D  Q  V  D  P  R  G  S  N  Y  K  N  P  C  I  S  V  *  R  G  C   : G  K  V  F  *  R  L  P  L  C  L  Y  I  N  K  K  E  E  F  V  A  W  N  F  *  R  R  *  *  *  *  N  E  *  S  F  *  K  S  T  L  D  K  V  L  L  N  V  L  P  Y  R  *  Q  *  C  L  G  K  *  E  L  S  N  F  C  Y  H  P  E  S  I  G  D  R  P  F  C  K  P  T  V  L  P  I  N  V  M  Q  F  G  L  F  F  K  C  T  *  T  V  A  S  K :   *  L  R  M  T  I  T  Y  F  L  L  L  V  *  M  L  S  S  L  H  T  N  R  F  A  F  M  *  *  K   </first_frame>
            <second_frame>  P  N  V  P  F  V  S  L  M  R  A  L  A  N  P  K  :  V  I  G  K  F  H  C  V  V  R  V  V  A  A  F  P  W  L  A  E  H  F  R  S  P  S  G  V  Y  R  I  R  L  T  L  E  D  P  T  T  R  I  H  A  Y  L  Y  K  E  D  A  :  E  K  F  F  D  G  Y  P  S  V  Y  T  L  T  K  K  R  N  L  L  L  G  T  S  E  G  D  D  D  S  E  M  N  D  H  F  R  N  P  P  W  I  R  C  C  L  M  S  Y  H  I  D  D  N  D  V  W  G  S  R  N  F  R  I  F  A  T  T  L  K  A  *  E  I  V  H  S  V  S  L  Q  C  F  Q  L  M  L  C  S  L  A  S  S  S  N  V  P  R  Q  L  L  A   : S  S  L  E  *  P  *  P  I  F  F  C  L  C  R  C  Y  H  P  C  T  Q  I  G  L  L  S  C  S  E  R  </second_frame>
            <third_frame>   L  M  Y  L  L  S  P  *  *  E  L  W  L  I  Q  R :   S  *  V  N  S  T  V  *  F  E  W  *  R  H  F  L  G  *  L  N  I  S  V  P  L  L  G  F  I  G  S  G  *  P  *  R  I  Q  L  Q  E  S  M  H  I  C  I  K  R  M  R :   K  S  F  L  T  A  T  P  L  F  I  H  *  Q  K  R  G  I  C  C  L  E  L  L  K  A  M  M  I  V  K  *  M  I  I  L  E  I  H  P  G  *  G  V  A  *  C  L  T  I  S  M  T  M  M  S  G  E  V  G  T  F  E  F  L  L  P  P  *  K  H  R  R  S  S  I  L  *  A  Y  S  A  S  N  *  C  Y  A  V  W  P  L  L  Q  M  Y  L  D  S  C  *  Q  :  V  A  *  N  D  H  N  L  F  S  F  A  C  V  D  V  I  I  L  A  H  K  *  V  C  F  H  V  V  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106564" stop="106611"/>
                    <exon start="107613" stop="107765"/>
                    <exon start="108238" stop="108453"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNVPFVSLMRALANPKVIGKFHCVVRVVAAFPWLAEHFRSPSGVYRIRLTLEDPTTRIHAYLYKEDAEKFFDGYPSVYTLTKKRNLLLGTSEGDDDSEMNDHFRNPPWIRCCLMSYHIDDNDVWGSRNFRIFATTLKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="111392" PGL_stop="108239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111392" e_stop="111348"/>
            <exon e_start="111267" e_stop="111151"/>
            <exon e_start="110334" e_stop="110153"/>
            <exon e_start="110048" e_stop="109646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.572" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111392" e_stop="111348" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111267" e_stop="111151" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.572">
            <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110334" e_stop="110153" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110048" e_stop="109646" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111392" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111377" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111377" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111377" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111377" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111376" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111375" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111374" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111373" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111373" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111373" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111373" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111372" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111372" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111372" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111372" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111372" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111371" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111371" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111371" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111370" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111370" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615077" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111370" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111370" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281287" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111369" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111369" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111369" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111369" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
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              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
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              <exon start="110048" stop="109889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
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              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111366" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111366" stop="111348"/>
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              <exon start="110048" stop="109774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111366" stop="111348"/>
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              <exon start="110048" stop="109817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111365" stop="111348"/>
              <exon start="111267" stop="111151"/>
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              <exon start="110048" stop="109766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111364" stop="111348"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620794" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111364" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111363" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111363" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111362" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111362" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111361" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111361" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="110025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111355" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281332" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111263" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="110036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111261" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111255" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111254" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111250" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111250" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111246" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111228" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111211" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111204" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111192" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111190" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110327" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110322" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110322" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110321" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110312" stop="110153"/>
              <exon start="110048" stop="109761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110302" stop="110153"/>
              <exon start="110048" stop="109718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110291" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110278" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110276" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110267" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110242" stop="110153"/>
              <exon start="110048" stop="109781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110234" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110226" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110212" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110204" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110160" stop="110153"/>
              <exon start="110048" stop="109772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110043" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109979" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTCTAGCAAGGAGTTAGCGGCTCAGCAGAAACCCTAGTTCGA : AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG : GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG : AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAGAAGAAAGTATATTTC</gDNA_template>
            <first_frame> P  L  *  Q  G  V  S  G  S  A  E  T  L  V  R  :  K  V  R  Q  G  R  T  T  T  M  A  V  P  L  L  N  K  K  V  V  K  K  R  V  K  R  F  I  R  P  Q  S  D  R  R  I  T  V  K  :  E  S  W  R  R  P  K  G  I  D  S  R  V  R  R  K  F  K  G  C  V  L  M  P  N  I  G  Y  G  S  D  K  K  T  R  H  Y  L  P  N  G  F  K  K  F  V  V  H  N  A  S  E  L  E  I  L  M  M  H  N  R :   T  Y  C  A  E  I  A  H  N  V  S  T  R  K  R  K  E  I  V  E  R  A  A  Q  L  D  V  V  I  T  N  K  L  A  R  L  H  S  Q  E  D  E  *  A  F  W  L  *  M  R  S  L  Y  C  F  S  V  *  T  C  S  L  C  F  V  *  L  I  L  C  F  P  E  V  D  F  D  T  S  Y  C  Y  Q  M  L  K  F  S  D  F  S  T  P  L  W  *  *  S  S  C  G  H  V  N  S  V  K  S  A  *  F  T  L  D  D  E  V  E  C  *  R  S  S  L  L  H  N  Q  K  K  K  V  Y  F </first_frame>
            <second_frame>  L  S  S  K  E  L  A  A  Q  Q  K  P  *  F  E :   R  *  D  K  V  E  Q  Q  Q  W  P  C  L  C  L  T  R  R  S  *  R  R  E  *  R  G  S  L  D  L  R  V  T  E  E  S  L  S  R :   K  A  G  A  D  P  R  V  L  I  L  E  *  G  E  S  S  R  D  V  S  *  C  P  I  L  D  T  G  Q  T  R  R  L  A  T  I  F  P  M  A  S  R  S  S  S  C  I  M  L  A  S  L  R  S  *  *  C  T  T   : E  L  T  V  Q  K  S  H  T  M  F  P  L  G  R  G  K  R  L  S  S  E  L  P  N  L  M  L  S  *  Q  T  S  L  L  G  C  T  A  R  R  M  N  E  H  F  G  F  R  *  D  L  Y  I  V  L  V  F  E  P  V  P  C  V  L  F  N  *  Y  S  V  F  P  K  W  I  L  T  H  P  I  A  I  K  C  L  N  F  Q  I  L  V  H  L  C  G  D  K  V  A  V  V  M  L  I  L  S  N  L  R  N  L  L  W  M  M  R  L  N  V  D  A  A  L  C  C  T  I  K  R  R  K  Y  I   </second_frame>
            <third_frame>   S  L  A  R  S  *  R  L  S  R  N  P  S  S   : K  G  K  T  R  *  N  N  N  N  G  R  A  S  A  *  Q  E  G  R  E  E  E  S  E  E  V  H  *  T  S  E  *  P  K  N  H  C  Q   : G  K  L  A  Q  T  Q  G  Y  *  F  *  S  E  E  K  V  Q  G  M  C  L  D  A  Q  Y  W  I  R  V  R  Q  E  D  S  P  L  S  S  Q  W  L  Q  E  V  R  R  A  *  C  *  R  A  *  D  P  N  D  A  Q  Q  :  N  L  L  C  R  N  R  T  Q  C  F  H  *  E  E  E  R  D  C  R  A  S  C  P  T  *  C  C  H  N  K  Q  A  C  *  V  A  Q  P  G  G  *  M  S  I  L  A  L  D  E  I  S  I  L  F  *  C  L  N  L  F  L  V  F  C  L  I  N  T  L  F  S  R  S  G  F  *  H  I  L  L  L  S  N  A  *  I  F  R  F  *  Y  T  F  V  V  I  K  *  L  W  S  C  *  F  C  Q  I  C  V  I  Y  S  G  *  *  G  *  M  L  T  Q  L  F  V  A  Q  S  K  E  E  S  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111383" stop="111348"/>
                    <exon start="111267" stop="111151"/>
                    <exon start="110334" stop="110153"/>
                    <exon start="110048" stop="109919"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGVSGSAETLVRKVRQGRTTTMAVPLLNKKVVKKRVKRFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNASELEILMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVITNKLARLHSQEDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109845" stop="109648"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSVFPKWILTHPIAIKCLNFQILVHLCGDKVAVVMLILSNLRNLLWMMRLNVDAALCCTIKRRKYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111392" e_stop="111348"/>
            <exon e_start="111267" e_stop="111151"/>
            <exon e_start="110334" e_stop="110153"/>
            <exon e_start="110048" e_stop="109774"/>
            <exon e_start="109669" e_stop="109655"/>
            <exon e_start="109027" e_stop="108995"/>
            <exon e_start="108913" e_stop="108896"/>
            <exon e_start="108643" e_stop="108579"/>
            <exon e_start="108262" e_stop="108239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.572" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.000" e_score="0.733"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.636"/>
          <exon-intron don_prob="0.380" acc_prob="0.000" e_score="0.667"/>
          <exon-intron don_prob="0.000" acc_prob="0.942" e_score="0.462"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111392" e_stop="111348" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111267" e_stop="111151" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.572">
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              <exon start="110276" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110267" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110242" stop="110153"/>
              <exon start="110048" stop="109781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110234" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110226" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110212" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110204" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110043" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109979" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTCTAGCAAGGAGTTAGCGGCTCAGCAGAAACCCTAGTTCGA : AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG : GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG : AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTA : AATCAAAAGAAGAAA : CAAAAGGAAATAAAAGAAACGGCAATGAAGAAA : ACAAGCAAAAGAAAATAG : AAAAAAAAATTAAATCTAATTGAAGCAAGTCTCTAACTTTTCTTACTGCATCCAAAAATTTCGAT : AGGGGTAGCCGTCAAAAAACTTTT</gDNA_template>
            <first_frame> P  L  *  Q  G  V  S  G  S  A  E  T  L  V  R  :  K  V  R  Q  G  R  T  T  T  M  A  V  P  L  L  N  K  K  V  V  K  K  R  V  K  R  F  I  R  P  Q  S  D  R  R  I  T  V  K  :  E  S  W  R  R  P  K  G  I  D  S  R  V  R  R  K  F  K  G  C  V  L  M  P  N  I  G  Y  G  S  D  K  K  T  R  H  Y  L  P  N  G  F  K  K  F  V  V  H  N  A  S  E  L  E  I  L  M  M  H  N  R :   T  Y  C  A  E  I  A  H  N  V  S  T  R  K  R  K  E  I  V  E  R  A  A  Q  L  D  V  V  I  T  N  K  L  A  R  L  H  S  Q  E  D  E  *  A  F  W  L  *  M  R  S  L  Y  C  F  S  V  *  T  C  S  L  C  F  V  *  L  I  L  C  F  P  E  V  D  F  D  T  S  Y  C  Y  Q  M  L  K  F  S  D  F  S   : K  S  K  E  E   : T  K  G  N  K  R  N  G  N  E  E   : N  K  Q  K  K  I   : E  K  K  I  K  S  N  *  S  K  S  L  T  F  L  T  A  S  K  N  F  D  :  R  G  S  R  Q  K  T  F </first_frame>
            <second_frame>  L  S  S  K  E  L  A  A  Q  Q  K  P  *  F  E :   R  *  D  K  V  E  Q  Q  Q  W  P  C  L  C  L  T  R  R  S  *  R  R  E  *  R  G  S  L  D  L  R  V  T  E  E  S  L  S  R :   K  A  G  A  D  P  R  V  L  I  L  E  *  G  E  S  S  R  D  V  S  *  C  P  I  L  D  T  G  Q  T  R  R  L  A  T  I  F  P  M  A  S  R  S  S  S  C  I  M  L  A  S  L  R  S  *  *  C  T  T   : E  L  T  V  Q  K  S  H  T  M  F  P  L  G  R  G  K  R  L  S  S  E  L  P  N  L  M  L  S  *  Q  T  S  L  L  G  C  T  A  R  R  M  N  E  H  F  G  F  R  *  D  L  Y  I  V  L  V  F  E  P  V  P  C  V  L  F  N  *  Y  S  V  F  P  K  W  I  L  T  H  P  I  A  I  K  C  L  N  F  Q  I  L  V  :  N  Q  K  K  K  :  Q  K  E  I  K  E  T  A  M  K  K  :  T  S  K  R  K  *  :  K  K  K  L  N  L  I  E  A  S  L  *  L  F  L  L  H  P  K  I  S  I :   G  V  A  V  K  K  L   </second_frame>
            <third_frame>   S  L  A  R  S  *  R  L  S  R  N  P  S  S   : K  G  K  T  R  *  N  N  N  N  G  R  A  S  A  *  Q  E  G  R  E  E  E  S  E  E  V  H  *  T  S  E  *  P  K  N  H  C  Q   : G  K  L  A  Q  T  Q  G  Y  *  F  *  S  E  E  K  V  Q  G  M  C  L  D  A  Q  Y  W  I  R  V  R  Q  E  D  S  P  L  S  S  Q  W  L  Q  E  V  R  R  A  *  C  *  R  A  *  D  P  N  D  A  Q  Q  :  N  L  L  C  R  N  R  T  Q  C  F  H  *  E  E  E  R  D  C  R  A  S  C  P  T  *  C  C  H  N  K  Q  A  C  *  V  A  Q  P  G  G  *  M  S  I  L  A  L  D  E  I  S  I  L  F  *  C  L  N  L  F  L  V  F  C  L  I  N  T  L  F  S  R  S  G  F  *  H  I  L  L  L  S  N  A  *  I  F  R  F  *  * :   I  K  R  R  N :   K  R  K  *  K  K  R  Q  *  R  K :   Q  A  K  E  N  R :   K  K  N  *  I  *  L  K  Q  V  S  N  F  S  Y  C  I  Q  K  F  R   : *  G  *  P  S  K  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111383" stop="111348"/>
                    <exon start="111267" stop="111151"/>
                    <exon start="110334" stop="110153"/>
                    <exon start="110048" stop="109919"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGVSGSAETLVRKVRQGRTTTMAVPLLNKKVVKKRVKRFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNASELEILMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVITNKLARLHSQEDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="111392" e_stop="111348"/>
            <exon e_start="111267" e_stop="111151"/>
            <exon e_start="110334" e_stop="110153"/>
            <exon e_start="110048" e_stop="109777"/>
            <exon e_start="109364" e_stop="109322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.572" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.562" e_score="1.000"/>
          <exon-only e_score="0.395"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111392" e_stop="111348" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="111347" i_stop="111268" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111267" e_stop="111151" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.572">
            <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110334" e_stop="110153" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110048" e_stop="109777" e_length="272"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.562">
            <gDNA_intron_boundary i_start="109776" i_stop="109365" i_length="412"/>
          </intron>
          <exon e_serial="5" e_score="0.395">
            <gDNA_exon_boundary e_start="109364" e_stop="109322" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111392" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111377" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111377" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111376" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111374" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111373" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111373" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111373" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111372" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111372" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111372" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111372" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111372" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111371" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111371" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111371" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111370" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111370" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615077" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111370" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111370" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281287" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111369" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111369" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111369" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111368" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111366" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111364" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111363" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111362" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111361" stop="111348"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="110025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281332" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111263" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="110036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111261" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111255" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111254" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111250" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111218" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
              <exon start="109364" stop="109322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111211" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111192" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111190" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110327" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110322" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110322" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110321" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110291" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110278" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110276" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110267" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110242" stop="110153"/>
              <exon start="110048" stop="109781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110234" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110226" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110212" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110204" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110043" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109979" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTCTAGCAAGGAGTTAGCGGCTCAGCAGAAACCCTAGTTCGA : AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG : GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG : AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA : CAATGTTGATATTGTATTGATAGATGGCAGCACTTGTGCTATT</gDNA_template>
            <first_frame> P  L  *  Q  G  V  S  G  S  A  E  T  L  V  R  :  K  V  R  Q  G  R  T  T  T  M  A  V  P  L  L  N  K  K  V  V  K  K  R  V  K  R  F  I  R  P  Q  S  D  R  R  I  T  V  K  :  E  S  W  R  R  P  K  G  I  D  S  R  V  R  R  K  F  K  G  C  V  L  M  P  N  I  G  Y  G  S  D  K  K  T  R  H  Y  L  P  N  G  F  K  K  F  V  V  H  N  A  S  E  L  E  I  L  M  M  H  N  R :   T  Y  C  A  E  I  A  H  N  V  S  T  R  K  R  K  E  I  V  E  R  A  A  Q  L  D  V  V  I  T  N  K  L  A  R  L  H  S  Q  E  D  E  *  A  F  W  L  *  M  R  S  L  Y  C  F  S  V  *  T  C  S  L  C  F  V  *  L  I  L  C  F  P  E  V  D  F  D  T  S  Y  C  Y  Q  M  L  K  F  S  D  F   : T  M  L  I  L  Y  *  *  M  A  A  L  V  L   </first_frame>
            <second_frame>  L  S  S  K  E  L  A  A  Q  Q  K  P  *  F  E :   R  *  D  K  V  E  Q  Q  Q  W  P  C  L  C  L  T  R  R  S  *  R  R  E  *  R  G  S  L  D  L  R  V  T  E  E  S  L  S  R :   K  A  G  A  D  P  R  V  L  I  L  E  *  G  E  S  S  R  D  V  S  *  C  P  I  L  D  T  G  Q  T  R  R  L  A  T  I  F  P  M  A  S  R  S  S  S  C  I  M  L  A  S  L  R  S  *  *  C  T  T   : E  L  T  V  Q  K  S  H  T  M  F  P  L  G  R  G  K  R  L  S  S  E  L  P  N  L  M  L  S  *  Q  T  S  L  L  G  C  T  A  R  R  M  N  E  H  F  G  F  R  *  D  L  Y  I  V  L  V  F  E  P  V  P  C  V  L  F  N  *  Y  S  V  F  P  K  W  I  L  T  H  P  I  A  I  K  C  L  N  F  Q  I  L  :  Q  C  *  Y  C  I  D  R  W  Q  H  L  C  Y  </second_frame>
            <third_frame>   S  L  A  R  S  *  R  L  S  R  N  P  S  S   : K  G  K  T  R  *  N  N  N  N  G  R  A  S  A  *  Q  E  G  R  E  E  E  S  E  E  V  H  *  T  S  E  *  P  K  N  H  C  Q   : G  K  L  A  Q  T  Q  G  Y  *  F  *  S  E  E  K  V  Q  G  M  C  L  D  A  Q  Y  W  I  R  V  R  Q  E  D  S  P  L  S  S  Q  W  L  Q  E  V  R  R  A  *  C  *  R  A  *  D  P  N  D  A  Q  Q  :  N  L  L  C  R  N  R  T  Q  C  F  H  *  E  E  E  R  D  C  R  A  S  C  P  T  *  C  C  H  N  K  Q  A  C  *  V  A  Q  P  G  G  *  M  S  I  L  A  L  D  E  I  S  I  L  F  *  C  L  N  L  F  L  V  F  C  L  I  N  T  L  F  S  R  S  G  F  *  H  I  L  L  L  S  N  A  *  I  F  R  F  Y :   N  V  D  I  V  L  I  D  G  S  T  C  A  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111383" stop="111348"/>
                    <exon start="111267" stop="111151"/>
                    <exon start="110334" stop="110153"/>
                    <exon start="110048" stop="109919"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGVSGSAETLVRKVRQGRTTTMAVPLLNKKVVKKRVKRFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNASELEILMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVITNKLARLHSQEDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="111287" e_stop="111151"/>
            <exon e_start="110334" e_stop="110153"/>
            <exon e_start="110048" e_stop="109646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.572" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111287" e_stop="111151" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.572">
            <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110334" e_stop="110153" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110048" e_stop="109646" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111287" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281332" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111263" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="110036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111261" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111255" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111254" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111250" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111250" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111246" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111228" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111211" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111204" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111192" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111190" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110327" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110322" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110322" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110321" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110312" stop="110153"/>
              <exon start="110048" stop="109761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110302" stop="110153"/>
              <exon start="110048" stop="109718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110291" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110278" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110276" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110267" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110242" stop="110153"/>
              <exon start="110048" stop="109781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110234" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110226" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110212" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110204" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110160" stop="110153"/>
              <exon start="110048" stop="109772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110043" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109979" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG : GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG : AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAGAAGAAAGTATATTTC</gDNA_template>
            <first_frame> V  L  R  L  F  R  R  R  *  D  K  V  E  Q  Q  Q  W  P  C  L  C  L  T  R  R  S  *  R  R  E  *  R  G  S  L  D  L  R  V  T  E  E  S  L  S  R :   K  A  G  A  D  P  R  V  L  I  L  E  *  G  E  S  S  R  D  V  S  *  C  P  I  L  D  T  G  Q  T  R  R  L  A  T  I  F  P  M  A  S  R  S  S  S  C  I  M  L  A  S  L  R  S  *  *  C  T  T   : E  L  T  V  Q  K  S  H  T  M  F  P  L  G  R  G  K  R  L  S  S  E  L  P  N  L  M  L  S  *  Q  T  S  L  L  G  C  T  A  R  R  M  N  E  H  F  G  F  R  *  D  L  Y  I  V  L  V  F  E  P  V  P  C  V  L  F  N  *  Y  S  V  F  P  K  W  I  L  T  H  P  I  A  I  K  C  L  N  F  Q  I  L  V  H  L  C  G  D  K  V  A  V  V  M  L  I  L  S  N  L  R  N  L  L  W  M  M  R  L  N  V  D  A  A  L  C  C  T  I  K  R  R  K  Y  I   </first_frame>
            <second_frame>  Y  Y  V  Y  F  A  E  G  K  T  R  *  N  N  N  N  G  R  A  S  A  *  Q  E  G  R  E  E  E  S  E  E  V  H  *  T  S  E  *  P  K  N  H  C  Q   : G  K  L  A  Q  T  Q  G  Y  *  F  *  S  E  E  K  V  Q  G  M  C  L  D  A  Q  Y  W  I  R  V  R  Q  E  D  S  P  L  S  S  Q  W  L  Q  E  V  R  R  A  *  C  *  R  A  *  D  P  N  D  A  Q  Q  :  N  L  L  C  R  N  R  T  Q  C  F  H  *  E  E  E  R  D  C  R  A  S  C  P  T  *  C  C  H  N  K  Q  A  C  *  V  A  Q  P  G  G  *  M  S  I  L  A  L  D  E  I  S  I  L  F  *  C  L  N  L  F  L  V  F  C  L  I  N  T  L  F  S  R  S  G  F  *  H  I  L  L  L  S  N  A  *  I  F  R  F  *  Y  T  F  V  V  I  K  *  L  W  S  C  *  F  C  Q  I  C  V  I  Y  S  G  *  *  G  *  M  L  T  Q  L  F  V  A  Q  S  K  E  E  S  I  F  </second_frame>
            <third_frame>   I  T  S  I  S  Q  K  V  R  Q  G  R  T  T  T  M  A  V  P  L  L  N  K  K  V  V  K  K  R  V  K  R  F  I  R  P  Q  S  D  R  R  I  T  V  K  :  E  S  W  R  R  P  K  G  I  D  S  R  V  R  R  K  F  K  G  C  V  L  M  P  N  I  G  Y  G  S  D  K  K  T  R  H  Y  L  P  N  G  F  K  K  F  V  V  H  N  A  S  E  L  E  I  L  M  M  H  N  R :   T  Y  C  A  E  I  A  H  N  V  S  T  R  K  R  K  E  I  V  E  R  A  A  Q  L  D  V  V  I  T  N  K  L  A  R  L  H  S  Q  E  D  E  *  A  F  W  L  *  M  R  S  L  Y  C  F  S  V  *  T  C  S  L  C  F  V  *  L  I  L  C  F  P  E  V  D  F  D  T  S  Y  C  Y  Q  M  L  K  F  S  D  F  S  T  P  L  W  *  *  S  S  C  G  H  V  N  S  V  K  S  A  *  F  T  L  D  D  E  V  E  C  *  R  S  S  L  L  H  N  Q  K  K  K  V  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111285" stop="111151"/>
                    <exon start="110334" stop="110153"/>
                    <exon start="110048" stop="109919"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITSISQKVRQGRTTTMAVPLLNKKVVKKRVKRFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNASELEILMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVITNKLARLHSQEDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109845" stop="109648"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSVFPKWILTHPIAIKCLNFQILVHLCGDKVAVVMLILSNLRNLLWMMRLNVDAALCCTIKRRKYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="111338" e_stop="111329"/>
            <exon e_start="111267" e_stop="111151"/>
            <exon e_start="110334" e_stop="110153"/>
            <exon e_start="110048" e_stop="109646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.995" e_score="0.700"/>
          <exon-intron don_prob="0.996" acc_prob="0.572" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.700">
            <gDNA_exon_boundary e_start="111338" e_stop="111329" e_length="10"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.995">
            <gDNA_intron_boundary i_start="111328" i_stop="111268" i_length="61"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="111267" e_stop="111151" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.572">
            <gDNA_intron_boundary i_start="111150" i_stop="110335" i_length="816"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110334" e_stop="110153" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110048" e_stop="109646" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111338" stop="111329"/>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111267" stop="111151"/>
              <exon start="110334" stop="110240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281332" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111263" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="110036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111261" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111255" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111254" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111250" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111250" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111246" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111228" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111211" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111204" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111192" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111190" stop="111151"/>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110327" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110322" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110322" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110321" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110312" stop="110153"/>
              <exon start="110048" stop="109761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110302" stop="110153"/>
              <exon start="110048" stop="109718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110291" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110278" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110276" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110267" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110242" stop="110153"/>
              <exon start="110048" stop="109781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110234" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110226" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110212" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110204" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110160" stop="110153"/>
              <exon start="110048" stop="109772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110043" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109979" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTTCCA : AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG : GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG : AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAGAAGAAAGTATATTTC</gDNA_template>
            <first_frame> L  S  S   : K  G  K  T  R  *  N  N  N  N  G  R  A  S  A  *  Q  E  G  R  E  E  E  S  E  E  V  H  *  T  S  E  *  P  K  N  H  C  Q   : G  K  L  A  Q  T  Q  G  Y  *  F  *  S  E  E  K  V  Q  G  M  C  L  D  A  Q  Y  W  I  R  V  R  Q  E  D  S  P  L  S  S  Q  W  L  Q  E  V  R  R  A  *  C  *  R  A  *  D  P  N  D  A  Q  Q  :  N  L  L  C  R  N  R  T  Q  C  F  H  *  E  E  E  R  D  C  R  A  S  C  P  T  *  C  C  H  N  K  Q  A  C  *  V  A  Q  P  G  G  *  M  S  I  L  A  L  D  E  I  S  I  L  F  *  C  L  N  L  F  L  V  F  C  L  I  N  T  L  F  S  R  S  G  F  *  H  I  L  L  L  S  N  A  *  I  F  R  F  *  Y  T  F  V  V  I  K  *  L  W  S  C  *  F  C  Q  I  C  V  I  Y  S  G  *  *  G  *  M  L  T  Q  L  F  V  A  Q  S  K  E  E  S  I  F  </first_frame>
            <second_frame>  S  L  P  :  K  V  R  Q  G  R  T  T  T  M  A  V  P  L  L  N  K  K  V  V  K  K  R  V  K  R  F  I  R  P  Q  S  D  R  R  I  T  V  K  :  E  S  W  R  R  P  K  G  I  D  S  R  V  R  R  K  F  K  G  C  V  L  M  P  N  I  G  Y  G  S  D  K  K  T  R  H  Y  L  P  N  G  F  K  K  F  V  V  H  N  A  S  E  L  E  I  L  M  M  H  N  R :   T  Y  C  A  E  I  A  H  N  V  S  T  R  K  R  K  E  I  V  E  R  A  A  Q  L  D  V  V  I  T  N  K  L  A  R  L  H  S  Q  E  D  E  *  A  F  W  L  *  M  R  S  L  Y  C  F  S  V  *  T  C  S  L  C  F  V  *  L  I  L  C  F  P  E  V  D  F  D  T  S  Y  C  Y  Q  M  L  K  F  S  D  F  S  T  P  L  W  *  *  S  S  C  G  H  V  N  S  V  K  S  A  *  F  T  L  D  D  E  V  E  C  *  R  S  S  L  L  H  N  Q  K  K  K  V  Y  F </second_frame>
            <third_frame>   L  F  Q :   R  *  D  K  V  E  Q  Q  Q  W  P  C  L  C  L  T  R  R  S  *  R  R  E  *  R  G  S  L  D  L  R  V  T  E  E  S  L  S  R :   K  A  G  A  D  P  R  V  L  I  L  E  *  G  E  S  S  R  D  V  S  *  C  P  I  L  D  T  G  Q  T  R  R  L  A  T  I  F  P  M  A  S  R  S  S  S  C  I  M  L  A  S  L  R  S  *  *  C  T  T   : E  L  T  V  Q  K  S  H  T  M  F  P  L  G  R  G  K  R  L  S  S  E  L  P  N  L  M  L  S  *  Q  T  S  L  L  G  C  T  A  R  R  M  N  E  H  F  G  F  R  *  D  L  Y  I  V  L  V  F  E  P  V  P  C  V  L  F  N  *  Y  S  V  F  P  K  W  I  L  T  H  P  I  A  I  K  C  L  N  F  Q  I  L  V  H  L  C  G  D  K  V  A  V  V  M  L  I  L  S  N  L  R  N  L  L  W  M  M  R  L  N  V  D  A  A  L  C  C  T  I  K  R  R  K  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111337" stop="111329"/>
                    <exon start="111267" stop="111151"/>
                    <exon start="110334" stop="110153"/>
                    <exon start="110048" stop="109919"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLPKVRQGRTTTMAVPLLNKKVVKKRVKRFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNASELEILMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVITNKLARLHSQEDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109845" stop="109648"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSVFPKWILTHPIAIKCLNFQILVHLCGDKVAVVMLILSNLRNLLWMMRLNVDAALCCTIKRRKYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="110342" e_stop="110153"/>
            <exon e_start="110048" e_stop="109718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.995"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="110342" e_stop="110153" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="110152" i_stop="110049" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="110048" e_stop="109718" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110342" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110334" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110327" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110322" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110322" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110321" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110312" stop="110153"/>
              <exon start="110048" stop="109761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110302" stop="110153"/>
              <exon start="110048" stop="109718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110291" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110278" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110276" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110267" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110242" stop="110153"/>
              <exon start="110048" stop="109781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110234" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110226" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110212" stop="110153"/>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110204" stop="110153"/>
              <exon start="110048" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110160" stop="110153"/>
              <exon start="110048" stop="109772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110048" stop="109783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110043" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109979" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG : AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAA</gDNA_template>
            <first_frame> Y  N  R  K  A  G  A  D  P  R  V  L  I  L  E  *  G  E  S  S  R  D  V  S  *  C  P  I  L  D  T  G  Q  T  R  R  L  A  T  I  F  P  M  A  S  R  S  S  S  C  I  M  L  A  S  L  R  S  *  *  C  T  T   : E  L  T  V  Q  K  S  H  T  M  F  P  L  G  R  G  K  R  L  S  S  E  L  P  N  L  M  L  S  *  Q  T  S  L  L  G  C  T  A  R  R  M  N  E  H  F  G  F  R  *  D  L  Y  I  V  L  V  F  E  P  V  P  C  V  L  F  N  *  Y  S  V  F  P  K  W  I  L  T  H  P  I  A  I  K  C  L  N  F  Q  I  L  V  H  L  C  G  D  K  V  A  V  V  M  L  I  L  S  N  L  R   </first_frame>
            <second_frame>  I  I  G  K  L  A  Q  T  Q  G  Y  *  F  *  S  E  E  K  V  Q  G  M  C  L  D  A  Q  Y  W  I  R  V  R  Q  E  D  S  P  L  S  S  Q  W  L  Q  E  V  R  R  A  *  C  *  R  A  *  D  P  N  D  A  Q  Q  :  N  L  L  C  R  N  R  T  Q  C  F  H  *  E  E  E  R  D  C  R  A  S  C  P  T  *  C  C  H  N  K  Q  A  C  *  V  A  Q  P  G  G  *  M  S  I  L  A  L  D  E  I  S  I  L  F  *  C  L  N  L  F  L  V  F  C  L  I  N  T  L  F  S  R  S  G  F  *  H  I  L  L  L  S  N  A  *  I  F  R  F  *  Y  T  F  V  V  I  K  *  L  W  S  C  *  F  C  Q  I  C  V  </second_frame>
            <third_frame>   *  *  E  S  W  R  R  P  K  G  I  D  S  R  V  R  R  K  F  K  G  C  V  L  M  P  N  I  G  Y  G  S  D  K  K  T  R  H  Y  L  P  N  G  F  K  K  F  V  V  H  N  A  S  E  L  E  I  L  M  M  H  N  R :   T  Y  C  A  E  I  A  H  N  V  S  T  R  K  R  K  E  I  V  E  R  A  A  Q  L  D  V  V  I  T  N  K  L  A  R  L  H  S  Q  E  D  E  *  A  F  W  L  *  M  R  S  L  Y  C  F  S  V  *  T  C  S  L  C  F  V  *  L  I  L  C  F  P  E  V  D  F  D  T  S  Y  C  Y  Q  M  L  K  F  S  D  F  S  T  P  L  W  *  *  S  S  C  G  H  V  N  S  V  K  S  A  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110334" stop="110153"/>
                    <exon start="110048" stop="109919"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNASELEILMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVITNKLARLHSQEDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="116160" PGL_stop="118515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116160" e_stop="116240"/>
            <exon e_start="116999" e_stop="117076"/>
            <exon e_start="117171" e_stop="117351"/>
            <exon e_start="117629" e_stop="117726"/>
            <exon e_start="117861" e_stop="118515"/>
          </exon_coordinates>
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              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116213" stop="116240"/>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116213" stop="116240"/>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116213" stop="116240"/>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="117995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="117989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117012" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="117954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117018" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117036" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117036" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117036" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117038" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="117919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117047" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117058" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117064" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117074" stop="117076"/>
              <exon start="117171" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117186" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117195" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117204" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117211" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117224" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="117991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117262" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117326" stop="117351"/>
              <exon start="117629" stop="117726"/>
              <exon start="117861" stop="118421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117632" stop="117726"/>
              <exon start="117861" stop="118349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117632" stop="117726"/>
              <exon start="117861" stop="118302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117632" stop="117726"/>
              <exon start="117861" stop="118248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117645" stop="117726"/>
              <exon start="117861" stop="118347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117648" stop="117726"/>
              <exon start="117861" stop="118515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117648" stop="117726"/>
              <exon start="117861" stop="118030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117716" stop="117726"/>
              <exon start="117861" stop="118172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117861" stop="118487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117866" stop="118347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117981" stop="118370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118004" stop="118461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118020" stop="118370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118022" stop="118461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118157" stop="118366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCGTTAGGGTTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG : ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTTTGTCAGGAACAAGAAAGACAGTTTTGATCAATCAGTTGCCTTCTATGTGATAGTATTTTATTTTTATTGCCACAGAGTTTAATG</gDNA_template>
            <first_frame> S  R  *  G  L  G  D  T  P  L  A  G  R  R  H  S  P  H  L  I  S  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  I  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  S  *  V  E  L  E  M  N  L  I  G  S  V  I  F  L  F  V  *  R  D  A  I  L  I  F  V  L  H  F  D  I  C  V  L  G  T  A  L  H  T  F  F  I  L  S  G  T  R  K  T  V  L  I  N  Q  L  P  S  M  *  *  Y  F  I  F  I  A  T  E  F  N  </first_frame>
            <second_frame>  L  V  R  V  *  E  T  H  L  S  P  V  D  V  T  R  R  I  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  L  S  L  L  L  V  L  I  N  Q  G  N  V  C  H  W  L  L  S  S  G  T  G  *  N  M  H  *  H  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  Q  I  K  H  T  L  L  V  S  W  :  T  L  L  R  F  Q  R  Q  M  R  V  S  D  F  F  M  T  L  R  V  D  S  V  S  T  H  S  E  M  R  K  P  S :   S  N  F  A  R  F  D  Q  C  S  L  D  R  R  E  S  H  I  S  I  L  M  M  E  E  Q  S  A  T  L  I  P  S  S  R  P  M  T  P  S  S  W  T  *  I  P  I  R  L  L  T  S  S  N  L  M  L  V  M  W  S  W  *  L  V  V  E  T  G  D  V  L  E  S  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  R  T  P  W  G  T  S  L  L  L  V  W  A  M  C  S  L  L  V  R  V  V  S  H  G  C  L  Y  L  R  V  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  L  N  Q  L  Q  L  L  K  N  H  R  L  N  L  R  *  I  *  *  V  R  *  Y  F  S  L  F  R  G  M  P  F  L  F  L  C  C  I  L  T  S  V  Y  S  V  L  L  Y  I  P  F  L  F  C  Q  E  Q  E  R  Q  F  *  S  I  S  C  L  L  C  D  S  I  L  F  L  L  P  Q  S  L  M </second_frame>
            <third_frame>   S  L  G  F  R  R  H  T  S  R  R  *  T  S  L  A  A  F  N  Q  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  *  A  F  F  W  S  S  *  I  K  G  M  F  A  T  G  Y  Y  P  Q  E  P  V  E  I  C  I  D  I  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  N  *  D  R  *  N  I  P  C  W  F  H  G :   R  C  Y  D  S  K  D  K  *  E  F  Q  T  S  L  *  H  *  G  S  I  P  S  P  L  T  Q  R  *  G  S  Q   : V  Q  T  L  Q  G  S  I  S  A  V  W  T  E  G  N  P  I  S  Q  Y  L  *  W  K  N  N  P  L  P  *  S  P  H  Q  G  Q  *  H  H  Q  A  G  L  R  F  Q  *  D  C  *  L  H  Q  I  *  C  W  *  C  G  H  G  D  W  W  *  K  Q  G  T  C  W  N  P  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  G  L  P  G  A  R  V  C  Y  S  S  G  Q  C  V  H  S  W  *  G  *  *  A  M  G  V  S  T  *  G  *  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  S  I  S  Y  N  C  L  K  I  I  G  *  T  *  D  E  F  N  R  F  G  N  I  S  L  C  L  E  G  C  H  S  Y  F  C  V  A  F  *  H  L  C  T  R  Y  C  F  T  Y  L  F  Y  F  V  R  N  K  K  D  S  F  D  Q  S  V  A  F  Y  V  I  V  F  Y  F  Y  C  H  R  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116169" stop="116240"/>
                    <exon start="116999" stop="117076"/>
                    <exon start="117171" stop="117351"/>
                    <exon start="117629" stop="117726"/>
                    <exon start="117861" stop="118295"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLGDTPLAGRRHSPHLISRKTAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKIRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="116172" e_stop="116240"/>
            <exon e_start="116999" e_stop="117076"/>
            <exon e_start="117171" e_stop="117351"/>
            <exon e_start="117861" e_stop="118487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.986"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="0.982"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="116172" e_stop="116240" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116999" e_stop="117076" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="117077" i_stop="117170" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="117171" e_stop="117351" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="117352" i_stop="117860" i_length="509"/>
          </intron>
          <exon e_serial="4" e_score="0.939">
            <gDNA_exon_boundary e_start="117861" e_stop="118487" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116172" stop="116240"/>
              <exon start="116999" stop="117076"/>
              <exon start="117171" stop="117340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117315" stop="117351"/>
              <exon start="117861" stop="118431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117861" stop="118487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117866" stop="118347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117981" stop="118370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118004" stop="118461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118020" stop="118370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118022" stop="118461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118157" stop="118366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG : TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTTTGTCAGGAACAAGAAAGACAGTTTTGATCAATCAGTTGCCTTCTATGTGATAGTAT</gDNA_template>
            <first_frame> L  G  D  T  P  L  A  G  R  R  H  S  P  H  L  I  S  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  I  R  T  D  K  T  Y  P  A  G  F  M   : V  Q  T  L  Q  G  S  I  S  A  V  W  T  E  G  N  P  I  S  Q  Y  L  *  W  K  N  N  P  L  P  *  S  P  H  Q  G  Q  *  H  H  Q  A  G  L  R  F  Q  *  D  C  *  L  H  Q  I  *  C  W  *  C  G  H  G  D  W  W  *  K  Q  G  T  C  W  N  P  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  G  L  P  G  A  R  V  C  Y  S  S  G  Q  C  V  H  S  W  *  G  *  *  A  M  G  V  S  T  *  G  *  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  S  I  S  Y  N  C  L  K  I  I  G  *  T  *  D  E  F  N  R  F  G  N  I  S  L  C  L  E  G  C  H  S  Y  F  C  V  A  F  *  H  L  C  T  R  Y  C  F  T  Y  L  F  Y  F  V  R  N  K  K  D  S  F  D  Q  S  V  A  F  Y  V  I  V  </first_frame>
            <second_frame>  *  E  T  H  L  S  P  V  D  V  T  R  R  I  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  L  S  L  L  L  V  L  I  N  Q  G  N  V  C  H  W  L  L  S  S  G  T  G  *  N  M  H  *  H  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  Q  I  K  H  T  L  L  V  S  W  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  S  *  V  E  L  E  M  N  L  I  G  S  V  I  F  L  F  V  *  R  D  A  I  L  I  F  V  L  H  F  D  I  C  V  L  G  T  A  L  H  T  F  F  I  L  S  G  T  R  K  T  V  L  I  N  Q  L  P  S  M  *  *  Y </second_frame>
            <third_frame>   R  R  H  T  S  R  R  *  T  S  L  A  A  F  N  Q  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  *  A  F  F  W  S  S  *  I  K  G  M  F  A  T  G  Y  Y  P  Q  E  P  V  E  I  C  I  D  I  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  N  *  D  R  *  N  I  P  C  W  F  H  G :   S  N  F  A  R  F  D  Q  C  S  L  D  R  R  E  S  H  I  S  I  L  M  M  E  E  Q  S  A  T  L  I  P  S  S  R  P  M  T  P  S  S  W  T  *  I  P  I  R  L  L  T  S  S  N  L  M  L  V  M  W  S  W  *  L  V  V  E  T  G  D  V  L  E  S  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  R  T  P  W  G  T  S  L  L  L  V  W  A  M  C  S  L  L  V  R  V  V  S  H  G  C  L  Y  L  R  V  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  L  N  Q  L  Q  L  L  K  N  H  R  L  N  L  R  *  I  *  *  V  R  *  Y  F  S  L  F  R  G  M  P  F  L  F  L  C  C  I  L  T  S  V  Y  S  V  L  L  Y  I  P  F  L  F  C  Q  E  Q  E  R  Q  F  *  S  I  S  C  L  L  C  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117286" stop="117351"/>
                    <exon start="117861" stop="118295"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNAKLWLMGKLGQIKHTLLVSWFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="116176" e_stop="116240"/>
            <exon e_start="116999" e_stop="117567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.985"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="116176" e_stop="116240" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="116241" i_stop="116998" i_length="758"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="116999" e_stop="117567" e_length="569"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116176" stop="116240"/>
              <exon start="116999" stop="117567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322402" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTC</gDNA_template>
            <first_frame> E  T  H  L  S  P  V  D  V  T  R  R  I  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L  *  V  T  C  L  S  P  S  L  F  F  Y  S  T  T  *  F  P  A  S  *  L  D  C  S  L  W  S  L  L  Q  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  I  R  T  D  K  T  Y  P  A  G  F  M  G  K  N  T  S  I  G  L  F  F  H  F  K  T  F  R  L  *  F  P  Y  I  C  T  V  *  V  L  F  I  P  D  E  S  N  N  T  D  S  S  I  Y  T  Y  F  P  S  S  K  D  N  C  *  S  V  Y  K  K  F  H  E  N  S  C  *  E  S  L  L  F  F  F  </first_frame>
            <second_frame>  R  H  T  S  R  R  *  T  S  L  A  A  F  N  Q  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F  C  K  *  H  V  F  P  Q  V  F  F  F  I  V  L  L  S  F  L  L  L  D  L  T  V  L  F  G  L  Y  F  R  L  L  S  L  L  L  V  L  I  N  Q  G  N  V  C  H  W  L  L  S  S  G  T  G  *  N  M  H  *  H  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  Q  I  K  H  T  L  L  V  S  W  V  R  T  P  P  L  D  C  F  F  I  S  K  P  L  D  Y  S  F  L  I  S  V  L  S  R  Y  C  S  F  Q  T  K  V  I  I  L  I  H  L  Y  T  R  T  S  P  V  P  K  T  I  V  D  L  C  T  K  N  F  M  K  I  H  V  E  S  L  F  Y  F  F  F </second_frame>
            <third_frame>   D  T  P  L  A  G  R  R  H  S  P  H  L  I  S  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  V  S  D  M  S  F  P  K  S  F  F  L  *  Y  Y  L  V  S  C  F  L  T  *  L  F  S  L  V  S  T  S  G  S  *  A  F  F  W  S  S  *  I  K  G  M  F  A  T  G  Y  Y  P  Q  E  P  V  E  I  C  I  D  I  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  N  *  D  R  *  N  I  P  C  W  F  H  G  *  E  H  L  H  W  I  V  F  S  F  Q  N  L  *  I  I  V  S  L  Y  L  Y  C  L  G  I  V  H  S  R  R  K  *  *  Y  *  F  I  Y  I  H  V  L  P  Q  F  Q  R  Q  L  L  I  C  V  Q  K  I  S  *  K  F  M  L  R  V  S  F  I  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117286" stop="117567"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNAKLWLMGKLGQIKHTLLVSWVRTPPLDCFFISKPLDYSFLISVLSRYCSFQTKVIILIHLYTRTSPVPKTIVDLCTKNFMKIHVESLFYFFF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117141" stop="117404"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDCSLWSLLQAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKIRTDKTYPAGFMGKNTSIGLFFHFKTFRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="118482" PGL_stop="117908"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118482" e_stop="117908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="118482" e_stop="117908" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118482" stop="117908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118482" stop="117916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCACATAGAAGGCAACTGATTGATCAAAACTGTCTTTCTTGTTCCTGACAAAATAAAAAAGGTATGTAAAGCAGTACCGAGTACACAGATGTCAAAATGCAACACAAAAATAAGAATGGCATCCCTCTAAACAAAGAGAAATATTACCGAACCTATTAAATTCATCTCAAGTTCAACCTATGATTTTTAAGCAGTTGTAGCTGATTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTACCCTTAGGTAGAGACACCCATGGCTTACTACCCTTACCAAGAGTGAACACATTGCCCAGACGAGTAGCAAACTCGTGCCCCAGGGAGTCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGGATTCCAACACGTCCCCTGTTTCTACCACCAGTCACCATGACCACATTACCAACATCAAATTTGATGAAGTCAACAATCTTATTGGAATCTAAGTCCAGCTTGATGGTGTCATTGGCCTTGATGAGGGGATCAGGGTAGCGGATTGTTCTTCCATCATAAGTATTGAGATATGGG</gDNA_template>
            <first_frame> I  T  *  K  A  T  D  *  S  K  L  S  F  L  F  L  T  K  *  K  R  Y  V  K  Q  Y  R  V  H  R  C  Q  N  A  T  Q  K  *  E  W  H  P  S  K  Q  R  E  I  L  P  N  L  L  N  S  S  Q  V  Q  P  M  I  F  K  Q  L  *  L  I  E  Q  P  S  S  C  E  P  L  Q  *  *  I  T  *  Y  L  Y  P  *  V  E  T  P  M  A  Y  Y  P  Y  Q  E  *  T  H  C  P  D  E  *  Q  T  R  A  P  G  S  P  E  C  E  L  S  Q  S  Y  P  C  A  S  L  Y  S  *  G  F  Q  H  V  P  C  F  Y  H  Q  S  P  *  P  H  Y  Q  H  Q  I  *  *  S  Q  Q  S  Y  W  N  L  S  P  A  *  W  C  H  W  P  *  *  G  D  Q  G  S  G  L  F  F  H  H  K  Y  *  D  M   </first_frame>
            <second_frame>  S  H  R  R  Q  L  I  D  Q  N  C  L  S  C  S  *  Q  N  K  K  G  M  *  S  S  T  E  Y  T  D  V  K  M  Q  H  K  N  K  N  G  I  P  L  N  K  E  K  Y  Y  R  T  Y  *  I  H  L  K  F  N  L  *  F  L  S  S  C  S  *  L  S  S  H  P  L  A  S  L  F  N  D  R  *  L  D  T  F  T  L  R  *  R  H  P  W  L  T  T  L  T  K  S  E  H  I  A  Q  T  S  S  K  L  V  P  Q  G  V  L  N  V  N  C  L  K  A  T  L  V  L  L  S  I  L  K  D  S  N  T  S  P  V  S  T  T  S  H  H  D  H  I  T  N  I  K  F  D  E  V  N  N  L  I  G  I  *  V  Q  L  D  G  V  I  G  L  D  E  G  I  R  V  A  D  C  S  S  I  I  S  I  E  I  W  </second_frame>
            <third_frame>   H  I  E  G  N  *  L  I  K  T  V  F  L  V  P  D  K  I  K  K  V  C  K  A  V  P  S  T  Q  M  S  K  C  N  T  K  I  R  M  A  S  L  *  T  K  R  N  I  T  E  P  I  K  F  I  S  S  S  T  Y  D  F  *  A  V  V  A  D  *  A  A  I  L  L  R  A  S  S  M  I  D  N  L  I  P  L  P  L  G  R  D  T  H  G  L  L  P  L  P  R  V  N  T  L  P  R  R  V  A  N  S  C  P  R  E  S  *  M  *  T  V  S  K  L  P  L  C  F  S  L  F  L  R  I  P  T  R  P  L  F  L  P  P  V  T  M  T  T  L  P  T  S  N  L  M  K  S  T  I  L  L  E  S  K  S  S  L  M  V  S  L  A  L  M  R  G  S  G  *  R  I  V  L  P  S  *  V  L  R  Y  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118211" stop="117990"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHPWLTTLTKSEHIAQTSSKLVPQGVLNVNCLKATLVLLSILKDSNTSPVSTTSHHDHITNIKFDEVNNLIGI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="120052" PGL_stop="122620"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120052" e_stop="120140"/>
            <exon e_start="120979" e_stop="121056"/>
            <exon e_start="121151" e_stop="121331"/>
            <exon e_start="121600" e_stop="121697"/>
            <exon e_start="121787" e_stop="122620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.989"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.890"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="120052" e_stop="120140" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120979" e_stop="121056" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121151" e_stop="121331" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121600" e_stop="121697" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="0.890">
            <gDNA_exon_boundary e_start="121787" e_stop="122620" e_length="834"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120052" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120054" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120059" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120060" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120071" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120072" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120073" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120073" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120074" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120076" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120076" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120076" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120076" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120077" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120077" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120078" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120078" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
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              <exon start="120133" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120134" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120983" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120988" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120988" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120994" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121009" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121014" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121015" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121016" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121030" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121038" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121039" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121170" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121195" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121198" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121215" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121263" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121279" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121286" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121319" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577655" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121603" stop="121697"/>
              <exon start="121787" stop="122174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121615" stop="121697"/>
              <exon start="121787" stop="122390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121616" stop="121697"/>
              <exon start="121787" stop="122030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121636" stop="121697"/>
              <exon start="121787" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121636" stop="121697"/>
              <exon start="121787" stop="122358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121654" stop="121697"/>
              <exon start="121787" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121789" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121790" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121795" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121823" stop="122412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121824" stop="122419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121824" stop="122412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121846" stop="122410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121886" stop="122495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121922" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265906" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121934" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121942" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121967" stop="122404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121990" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412717" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121997" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122012" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122024" stop="122434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122037" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122062" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122062" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122063" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122067" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122069" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122070" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122128" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122148" stop="122428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCTTCGACTCGTTAGGGTTTAAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATTGCGACTGAGTTTAAGGACACCTTGTCCATGAGTTTATTAACTTAATTCAAAATGAGTTTTTGGTTGTAATATTTTTTAAACTGACCCGGAGTTGGATTCCAAATTTGGTATTCTTCACTTAACCTGATTCCTAATTTTTTTTTGGTCATTTAACTTCCGATTAAGTTAGCTCTTTTGTCCTGCTAATAGTATAATCAAAC</gDNA_template>
            <first_frame> Y  L  R  L  V  R  V  *  D  K  H  I  S  P  V  A  I  T  R  G  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  L  *  L  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  R  T  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  Q  M  R  V  S  D  F  F  M  T  L  R  A  G  S  V  S  T  H  S  E  M  R  K  P  S :   S  N  F  V  R  F  D  Q  C  S  L  D  R  R  G  S  H  I  S  T  L  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  L  S  W  T  *  I  P  I  R  L  L  T  S  S  N  L  M  L  E  M  W  L  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  K  T  P  W  G  M  S  L  L  P  V  W  E  M  C  S  L  L  A  R  V  V  S  H  G  C  L  Y  L  R  G  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  P  N  Q  L  Q  L  L  K  N  L  S  L  N  L  R  *  D  *  *  V  G  P  Y  F  S  L  F  R  G  M  P  F  L  F  L  C  V  P  F  Q  Y  L  C  T  R  Y  C  F  T  Y  I  F  L  S  G  K  K  K  D  *  V  E  I  N  Q  L  P  S  M  L  *  Y  F  I  A  T  E  F  K  D  T  L  S  M  S  L  L  T  *  F  K  M  S  F  W  L  *  Y  F  L  N  *  P  G  V  G  F  Q  I  W  Y  S  S  L  N  L  I  P  N  F  F  L  V  I  *  L  P  I  K  L  A  L  L  S  C  *  *  Y  N  Q   </first_frame>
            <second_frame>  I  F  D  S  L  G  F  K  T  N  T  S  R  R  *  P  S  L  A  A  A  N  L  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  F  D  L  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  D  G  Q  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  K  *  E  F  P  T  S  L  *  H  *  G  P  V  P  S  P  L  T  Q  R  *  G  S  Q   : V  Q  T  L  *  G  S  I  S  A  V  W  T  E  G  D  P  I  S  Q  H  L  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  *  A  G  L  R  F  Q  *  D  C  *  L  H  Q  I  *  C  W  K  C  G  Y  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  R  L  P  G  A  *  V  C  Y  P  F  G  K  C  V  H  S  W  Q  G  *  *  A  M  G  V  S  T  *  G  E  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  P  I  S  Y  N  C  L  K  I  L  V  *  T  *  D  E  I  N  R  L  G  H  I  S  L  C  L  E  G  C  R  S  Y  F  C  V  F  H  F  N  I  C  V  L  G  T  V  L  H  T  F  F  C  Q  E  K  R  K  T  E  L  R  S  I  S  C  L  L  C  Y  S  I  L  L  R  L  S  L  R  T  P  C  P  *  V  Y  *  L  N  S  K  *  V  F  G  C  N  I  F  *  T  D  P  E  L  D  S  K  F  G  I  L  H  L  T  *  F  L  I  F  F  W  S  F  N  F  R  L  S  *  L  F  C  P  A  N  S  I  I  K  </second_frame>
            <third_frame>   S  S  T  R  *  G  L  R  Q  T  H  L  A  G  S  H  H  S  R  Q  L  I  C  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  S  *  F  E  L  E  M  R  L  I  G  W  A  I  F  L  F  V  *  R  D  A  V  L  I  F  V  C  S  I  S  I  F  V  Y  S  V  L  F  Y  I  H  F  F  V  R  K  K  E  R  L  S  *  D  Q  S  V  A  F  Y  V  I  V  F  Y  C  D  *  V  *  G  H  L  V  H  E  F  I  N  L  I  Q  N  E  F  L  V  V  I  F  F  K  L  T  R  S  W  I  P  N  L  V  F  F  T  *  P  D  S  *  F  F  F  G  H  L  T  S  D  *  V  S  S  F  V  L  L  I  V  *  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120069" stop="120140"/>
                    <exon start="120979" stop="121056"/>
                    <exon start="121151" stop="121331"/>
                    <exon start="121600" stop="121697"/>
                    <exon start="121787" stop="122221"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLRQTHLAGSHHSRQLICRKTAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122242" stop="122451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEINRLGHISLCLEGCRSYFCVFHFNICVLGTVLHTFFCQEKRKTELRSISCLLCYSILLRLSLRTPCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="120094" e_stop="120140"/>
            <exon e_start="120977" e_stop="121056"/>
            <exon e_start="121151" e_stop="121331"/>
            <exon e_start="121600" e_stop="121697"/>
            <exon e_start="121787" e_stop="122527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.894"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.894">
            <gDNA_exon_boundary e_start="120094" e_stop="120140" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="120141" i_stop="120976" i_length="836"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120977" e_stop="121056" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121151" e_stop="121331" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121600" e_stop="121697" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="0.903">
            <gDNA_exon_boundary e_start="121787" e_stop="122527" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120094" stop="120140"/>
              <exon start="120977" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120978" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120978" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120983" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120988" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120988" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120994" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121009" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121014" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121015" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121016" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121030" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121038" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121039" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121170" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121195" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121198" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121215" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121263" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121279" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121286" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121319" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577655" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121603" stop="121697"/>
              <exon start="121787" stop="122174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121615" stop="121697"/>
              <exon start="121787" stop="122390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121616" stop="121697"/>
              <exon start="121787" stop="122030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121636" stop="121697"/>
              <exon start="121787" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121636" stop="121697"/>
              <exon start="121787" stop="122358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121654" stop="121697"/>
              <exon start="121787" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121789" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121790" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121795" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121823" stop="122412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121824" stop="122419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121824" stop="122412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121846" stop="122410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121886" stop="122495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121922" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265906" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121934" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121942" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121967" stop="122404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121990" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412717" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121997" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122012" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122024" stop="122434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122037" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122062" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122062" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122063" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122067" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122069" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122070" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122128" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122148" stop="122428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG : AGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATTGCGACTGAGTTTAAGGACACCTTGTCCATGAGTTTATTAACTTAATTCAAAATGAGTTTTTGGTTGTAATATTTTTTAAACTGACCCGGAGTTGGATTCCAAATTTG</gDNA_template>
            <first_frame> V  A  I  T  R  G  S  *  S  V  G  K  P  P  K  * :   G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  F  D  L  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  D  G  Q  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  K  *  E  F  P  T  S  L  *  H  *  G  P  V  P  S  P  L  T  Q  R  *  G  S  Q   : V  Q  T  L  *  G  S  I  S  A  V  W  T  E  G  D  P  I  S  Q  H  L  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  *  A  G  L  R  F  Q  *  D  C  *  L  H  Q  I  *  C  W  K  C  G  Y  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  R  L  P  G  A  *  V  C  Y  P  F  G  K  C  V  H  S  W  Q  G  *  *  A  M  G  V  S  T  *  G  E  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  P  I  S  Y  N  C  L  K  I  L  V  *  T  *  D  E  I  N  R  L  G  H  I  S  L  C  L  E  G  C  R  S  Y  F  C  V  F  H  F  N  I  C  V  L  G  T  V  L  H  T  F  F  C  Q  E  K  R  K  T  E  L  R  S  I  S  C  L  L  C  Y  S  I  L  L  R  L  S  L  R  T  P  C  P  *  V  Y  *  L  N  S  K  *  V  F  G  C  N  I  F  *  T  D  P  E  L  D  S  K  F  </first_frame>
            <second_frame>  *  P  S  L  A  A  A  N  L  S  E  N  R  Q  N   : E  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  S  *  F  E  L  E  M  R  L  I  G  W  A  I  F  L  F  V  *  R  D  A  V  L  I  F  V  C  S  I  S  I  F  V  Y  S  V  L  F  Y  I  H  F  F  V  R  K  K  E  R  L  S  *  D  Q  S  V  A  F  Y  V  I  V  F  Y  C  D  *  V  *  G  H  L  V  H  E  F  I  N  L  I  Q  N  E  F  L  V  V  I  F  F  K  L  T  R  S  W  I  P  N  L </second_frame>
            <third_frame>   S  H  H  S  R  Q  L  I  C  R  K  T  A  K  M  :  R  Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  L  *  L  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  R  T  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  Q  M  R  V  S  D  F  F  M  T  L  R  A  G  S  V  S  T  H  S  E  M  R  K  P  S :   S  N  F  V  R  F  D  Q  C  S  L  D  R  R  G  S  H  I  S  T  L  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  L  S  W  T  *  I  P  I  R  L  L  T  S  S  N  L  M  L  E  M  W  L  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  K  T  P  W  G  M  S  L  L  P  V  W  E  M  C  S  L  L  A  R  V  V  S  H  G  C  L  Y  L  R  G  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  P  N  Q  L  Q  L  L  K  N  L  S  L  N  L  R  *  D  *  *  V  G  P  Y  F  S  L  F  R  G  M  P  F  L  F  L  C  V  P  F  Q  Y  L  C  T  R  Y  C  F  T  Y  I  F  L  S  G  K  K  K  D  *  V  E  I  N  Q  L  P  S  M  L  *  Y  F  I  A  T  E  F  K  D  T  L  S  M  S  L  L  T  *  F  K  M  S  F  W  L  *  Y  F  L  N  *  P  G  V  G  F  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120098" stop="120140"/>
                    <exon start="120977" stop="121056"/>
                    <exon start="121151" stop="121331"/>
                    <exon start="121600" stop="121697"/>
                    <exon start="121787" stop="122221"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSLAAANLSENRQNEARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122242" stop="122451"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEINRLGHISLCLEGCRSYFCVFHFNICVLGTVLHTFFCQEKRKTELRSISCLLCYSILLRLSLRTPCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="120906" e_stop="120907"/>
            <exon e_start="120979" e_stop="121056"/>
            <exon e_start="121151" e_stop="121331"/>
            <exon e_start="121600" e_stop="121697"/>
            <exon e_start="121787" e_stop="122527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.270" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120906" e_stop="120907" e_length="2"/>
          </exon>
          <intron i_serial="1" don_prob="0.270" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120908" i_stop="120978" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120979" e_stop="121056" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121151" e_stop="121331" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121600" e_stop="121697" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="0.903">
            <gDNA_exon_boundary e_start="121787" e_stop="122527" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120906" stop="120907"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120983" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120988" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120988" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120994" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121009" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121014" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121015" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121016" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121030" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121038" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121039" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121170" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121195" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121198" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121215" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121263" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121279" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121286" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121319" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577655" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121603" stop="121697"/>
              <exon start="121787" stop="122174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121615" stop="121697"/>
              <exon start="121787" stop="122390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121616" stop="121697"/>
              <exon start="121787" stop="122030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121636" stop="121697"/>
              <exon start="121787" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121636" stop="121697"/>
              <exon start="121787" stop="122358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121654" stop="121697"/>
              <exon start="121787" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121789" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121790" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121795" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121823" stop="122412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121824" stop="122419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121824" stop="122412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121846" stop="122410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121886" stop="122495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121922" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265906" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121934" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121942" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121967" stop="122404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121990" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412717" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121997" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122012" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122024" stop="122434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122037" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122062" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122062" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122063" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122067" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122069" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122070" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122128" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122148" stop="122428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATTGCGACTGAGTTTAAGGACACCTTGTCCATGAGTTTATTAACTTAATTCAAAATGAGTTTTTGGTTGTAATATTTTTTAAACTGACCCGGAGTTGGATTCCAAATTTG</gDNA_template>
            <first_frame> W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  L  *  L  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  R  T  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  Q  M  R  V  S  D  F  F  M  T  L  R  A  G  S  V  S  T  H  S  E  M  R  K  P  S :   S  N  F  V  R  F  D  Q  C  S  L  D  R  R  G  S  H  I  S  T  L  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  L  S  W  T  *  I  P  I  R  L  L  T  S  S  N  L  M  L  E  M  W  L  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  K  T  P  W  G  M  S  L  L  P  V  W  E  M  C  S  L  L  A  R  V  V  S  H  G  C  L  Y  L  R  G  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  P  N  Q  L  Q  L  L  K  N  L  S  L  N  L  R  *  D  *  *  V  G  P  Y  F  S  L  F  R  G  M  P  F  L  F  L  C  V  P  F  Q  Y  L  C  T  R  Y  C  F  T  Y  I  F  L  S  G  K  K  K  D  *  V  E  I  N  Q  L  P  S  M  L  *  Y  F  I  A  T  E  F  K  D  T  L  S  M  S  L  L  T  *  F  K  M  S  F  W  L  *  Y  F  L  N  *  P  G  V  G  F  Q  I   </first_frame>
            <second_frame>   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  F  D  L  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  D  G  Q  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  K  *  E  F  P  T  S  L  *  H  *  G  P  V  P  S  P  L  T  Q  R  *  G  S  Q   : V  Q  T  L  *  G  S  I  S  A  V  W  T  E  G  D  P  I  S  Q  H  L  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  *  A  G  L  R  F  Q  *  D  C  *  L  H  Q  I  *  C  W  K  C  G  Y  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  R  L  P  G  A  *  V  C  Y  P  F  G  K  C  V  H  S  W  Q  G  *  *  A  M  G  V  S  T  *  G  E  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  P  I  S  Y  N  C  L  K  I  L  V  *  T  *  D  E  I  N  R  L  G  H  I  S  L  C  L  E  G  C  R  S  Y  F  C  V  F  H  F  N  I  C  V  L  G  T  V  L  H  T  F  F  C  Q  E  K  R  K  T  E  L  R  S  I  S  C  L  L  C  Y  S  I  L  L  R  L  S  L  R  T  P  C  P  *  V  Y  *  L  N  S  K  *  V  F  G  C  N  I  F  *  T  D  P  E  L  D  S  K  F  </second_frame>
            <third_frame>   :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  S  *  F  E  L  E  M  R  L  I  G  W  A  I  F  L  F  V  *  R  D  A  V  L  I  F  V  C  S  I  S  I  F  V  Y  S  V  L  F  Y  I  H  F  F  V  R  K  K  E  R  L  S  *  D  Q  S  V  A  F  Y  V  I  V  F  Y  C  D  *  V  *  G  H  L  V  H  E  F  I  N  L  I  Q  N  E  F  L  V  V  I  F  F  K  L  T  R  S  W  I  P  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120979" stop="121056"/>
                    <exon start="121151" stop="121331"/>
                    <exon start="121600" stop="121697"/>
                    <exon start="121787" stop="122221"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122242" stop="122451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEINRLGHISLCLEGCRSYFCVFHFNICVLGTVLHTFFCQEKRKTELRSISCLLCYSILLRLSLRTPCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="120076" e_stop="120140"/>
            <exon e_start="120381" e_stop="120407"/>
            <exon e_start="120979" e_stop="121056"/>
            <exon e_start="121151" e_stop="121331"/>
            <exon e_start="121600" e_stop="121697"/>
            <exon e_start="121787" e_stop="122527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="0.877"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.556"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.877">
            <gDNA_exon_boundary e_start="120076" e_stop="120140" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="120141" i_stop="120380" i_length="240"/>
          </intron>
          <exon e_serial="2" e_score="0.556">
            <gDNA_exon_boundary e_start="120381" e_stop="120407" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120408" i_stop="120978" i_length="571"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120979" e_stop="121056" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121151" e_stop="121331" e_length="181"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="121600" e_stop="121697" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="0.903">
            <gDNA_exon_boundary e_start="121787" e_stop="122527" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120076" stop="120140"/>
              <exon start="120381" stop="120407"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120983" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120988" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120988" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120994" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121009" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121014" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121015" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121016" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121030" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121038" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121039" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121170" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121195" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="121905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121198" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121215" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121263" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121279" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121286" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121319" stop="121331"/>
              <exon start="121600" stop="121697"/>
              <exon start="121787" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577655" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121603" stop="121697"/>
              <exon start="121787" stop="122174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121615" stop="121697"/>
              <exon start="121787" stop="122390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121616" stop="121697"/>
              <exon start="121787" stop="122030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121636" stop="121697"/>
              <exon start="121787" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121636" stop="121697"/>
              <exon start="121787" stop="122358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121654" stop="121697"/>
              <exon start="121787" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121789" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121790" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121795" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121823" stop="122412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121824" stop="122419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121824" stop="122412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121846" stop="122410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121886" stop="122495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121922" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265906" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121934" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121942" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121967" stop="122404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121990" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412717" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121997" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122012" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122024" stop="122434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122037" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122062" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122062" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122063" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122067" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122069" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122070" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122128" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122148" stop="122428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG : GGCTCGTATGTGGAAATAATCGATTGC : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATTGCGACTGAGTTTAAGGACACCTTGTCCATGAGTTTATTAACTTAATTCAAAATGAGTTTTTGGTTGTAATATTTTTTAAACTGACCCGGAGTTGGATTCCAAATTTG</gDNA_template>
            <first_frame> D  K  H  I  S  P  V  A  I  T  R  G  S  *  S  V  G  K  P  P  K  W :   A  R  M  W  K  *  S  I  A :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  L  *  L  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  R  T  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  Q  M  R  V  S  D  F  F  M  T  L  R  A  G  S  V  S  T  H  S  E  M  R  K  P  S :   S  N  F  V  R  F  D  Q  C  S  L  D  R  R  G  S  H  I  S  T  L  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  L  S  W  T  *  I  P  I  R  L  L  T  S  S  N  L  M  L  E  M  W  L  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  K  T  P  W  G  M  S  L  L  P  V  W  E  M  C  S  L  L  A  R  V  V  S  H  G  C  L  Y  L  R  G  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  P  N  Q  L  Q  L  L  K  N  L  S  L  N  L  R  *  D  *  *  V  G  P  Y  F  S  L  F  R  G  M  P  F  L  F  L  C  V  P  F  Q  Y  L  C  T  R  Y  C  F  T  Y  I  F  L  S  G  K  K  K  D  *  V  E  I  N  Q  L  P  S  M  L  *  Y  F  I  A  T  E  F  K  D  T  L  S  M  S  L  L  T  *  F  K  M  S  F  W  L  *  Y  F  L  N  *  P  G  V  G  F  Q  I   </first_frame>
            <second_frame>  T  N  T  S  R  R  *  P  S  L  A  A  A  N  L  S  E  N  R  Q  N   : G  L  V  C  G  N  N  R  L   : R  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  F  D  L  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  D  G  Q  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  K  *  E  F  P  T  S  L  *  H  *  G  P  V  P  S  P  L  T  Q  R  *  G  S  Q   : V  Q  T  L  *  G  S  I  S  A  V  W  T  E  G  D  P  I  S  Q  H  L  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  *  A  G  L  R  F  Q  *  D  C  *  L  H  Q  I  *  C  W  K  C  G  Y  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  R  L  P  G  A  *  V  C  Y  P  F  G  K  C  V  H  S  W  Q  G  *  *  A  M  G  V  S  T  *  G  E  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  P  I  S  Y  N  C  L  K  I  L  V  *  T  *  D  E  I  N  R  L  G  H  I  S  L  C  L  E  G  C  R  S  Y  F  C  V  F  H  F  N  I  C  V  L  G  T  V  L  H  T  F  F  C  Q  E  K  R  K  T  E  L  R  S  I  S  C  L  L  C  Y  S  I  L  L  R  L  S  L  R  T  P  C  P  *  V  Y  *  L  N  S  K  *  V  F  G  C  N  I  F  *  T  D  P  E  L  D  S  K  F  </second_frame>
            <third_frame>   Q  T  H  L  A  G  S  H  H  S  R  Q  L  I  C  R  K  T  A  K  M  :  G  S  Y  V  E  I  I  D  C  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  S  *  F  E  L  E  M  R  L  I  G  W  A  I  F  L  F  V  *  R  D  A  V  L  I  F  V  C  S  I  S  I  F  V  Y  S  V  L  F  Y  I  H  F  F  V  R  K  K  E  R  L  S  *  D  Q  S  V  A  F  Y  V  I  V  F  Y  C  D  *  V  *  G  H  L  V  H  E  F  I  N  L  I  Q  N  E  F  L  V  V  I  F  F  K  L  T  R  S  W  I  P  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120078" stop="120140"/>
                    <exon start="120381" stop="120407"/>
                    <exon start="120979" stop="121056"/>
                    <exon start="121151" stop="121331"/>
                    <exon start="121600" stop="121697"/>
                    <exon start="121787" stop="122221"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTHLAGSHHSRQLICRKTAKMGSYVEIIDCARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122242" stop="122451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEINRLGHISLCLEGCRSYFCVFHFNICVLGTVLHTFFCQEKRKTELRSISCLLCYSILLRLSLRTPCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="120052" e_stop="120140"/>
            <exon e_start="120979" e_stop="121056"/>
            <exon e_start="121151" e_stop="121331"/>
            <exon e_start="121600" e_stop="122527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.989"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="1.000"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="120052" e_stop="120140" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120979" e_stop="121056" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121151" e_stop="121331" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="121332" i_stop="121599" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="0.903">
            <gDNA_exon_boundary e_start="121600" e_stop="122527" e_length="928"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120052" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120079" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120079" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120079" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120080" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120083" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120086" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120088" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120089" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120090" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120090" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120091" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120094" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120095" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120095" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120095" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120109" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120116" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121331"/>
              <exon start="121600" stop="121652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121789" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121790" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121795" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121823" stop="122412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121824" stop="122419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121824" stop="122412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121846" stop="122410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121886" stop="122495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121922" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265906" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121934" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121942" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121967" stop="122404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121990" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412717" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121997" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122012" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122024" stop="122434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122037" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122062" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122062" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122063" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122067" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122069" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122070" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122128" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122148" stop="122428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCTTCGACTCGTTAGGGTTTAAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATTGCGACTGAGTTTAAGGACACCTTGTCCATGAGTTTATTAACTTAATTCAAAATGAGTTTTTGGTTGTAATATTTTTTAAACTGACCCGGAGTTGGATTCCAAATTTG</gDNA_template>
            <first_frame> Y  L  R  L  V  R  V  *  D  K  H  I  S  P  V  A  I  T  R  G  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  L  *  L  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  R  T  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  Q  M  R  V  S  D  F  F  M  T  L  R  A  G  S  V  S  T  H  S  E  M  R  K  P  R  F  E  S  V  S  C  F  F  F  I  P  V  C  F  E  C  C  A  I  K  *  *  P  C  F  L  L  F  A  V  Q  T  L  *  G  S  I  S  A  V  W  T  E  G  D  P  I  S  Q  H  L  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  *  A  G  L  R  F  Q  *  D  C  *  L  H  Q  I  *  C  W  K  C  G  Y  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  R  L  P  G  A  *  V  C  Y  P  F  G  K  C  V  H  S  W  Q  G  *  *  A  M  G  V  S  T  *  G  E  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  P  I  S  Y  N  C  L  K  I  L  V  *  T  *  D  E  I  N  R  L  G  H  I  S  L  C  L  E  G  C  R  S  Y  F  C  V  F  H  F  N  I  C  V  L  G  T  V  L  H  T  F  F  C  Q  E  K  R  K  T  E  L  R  S  I  S  C  L  L  C  Y  S  I  L  L  R  L  S  L  R  T  P  C  P  *  V  Y  *  L  N  S  K  *  V  F  G  C  N  I  F  *  T  D  P  E  L  D  S  K  F  </first_frame>
            <second_frame>  I  F  D  S  L  G  F  K  T  N  T  S  R  R  *  P  S  L  A  A  A  N  L  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  F  D  L  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  D  G  Q  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  K  *  E  F  P  T  S  L  *  H  *  G  P  V  P  S  P  L  T  Q  R  *  G  S  Q  G  L  N  L  F  P  A  S  S  L  F  R  F  A  L  N  A  V  L  L  S  S  D  L  V  F  C  S  L  Q  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  S  *  F  E  L  E  M  R  L  I  G  W  A  I  F  L  F  V  *  R  D  A  V  L  I  F  V  C  S  I  S  I  F  V  Y  S  V  L  F  Y  I  H  F  F  V  R  K  K  E  R  L  S  *  D  Q  S  V  A  F  Y  V  I  V  F  Y  C  D  *  V  *  G  H  L  V  H  E  F  I  N  L  I  Q  N  E  F  L  V  V  I  F  F  K  L  T  R  S  W  I  P  N  L </second_frame>
            <third_frame>   S  S  T  R  *  G  L  R  Q  T  H  L  A  G  S  H  H  S  R  Q  L  I  C  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  V  *  I  C  F  L  L  L  L  Y  S  G  L  L  *  M  L  C  Y  *  V  V  T  L  F  S  A  L  C  S  S  N  F  V  R  F  D  Q  C  S  L  D  R  R  G  S  H  I  S  T  L  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  L  S  W  T  *  I  P  I  R  L  L  T  S  S  N  L  M  L  E  M  W  L  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  K  T  P  W  G  M  S  L  L  P  V  W  E  M  C  S  L  L  A  R  V  V  S  H  G  C  L  Y  L  R  G  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  P  N  Q  L  Q  L  L  K  N  L  S  L  N  L  R  *  D  *  *  V  G  P  Y  F  S  L  F  R  G  M  P  F  L  F  L  C  V  P  F  Q  Y  L  C  T  R  Y  C  F  T  Y  I  F  L  S  G  K  K  K  D  *  V  E  I  N  Q  L  P  S  M  L  *  Y  F  I  A  T  E  F  K  D  T  L  S  M  S  L  L  T  *  F  K  M  S  F  W  L  *  Y  F  L  N  *  P  G  V  G  F  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121688" stop="122221"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSQGLNLFPASSLFRFALNAVLLSSDLVFCSLQFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120069" stop="120140"/>
                    <exon start="120979" stop="121056"/>
                    <exon start="121151" stop="121331"/>
                    <exon start="121600" stop="121703"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLRQTHLAGSHHSRQLICRKTAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122242" stop="122451"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEINRLGHISLCLEGCRSYFCVFHFNICVLGTVLHTFFCQEKRKTELRSISCLLCYSILLRLSLRTPCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="120095" e_stop="120140"/>
            <exon e_start="120979" e_stop="121056"/>
            <exon e_start="121151" e_stop="121697"/>
            <exon e_start="121787" e_stop="122527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.978"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.918"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="120095" e_stop="120140" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120141" i_stop="120978" i_length="838"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120979" e_stop="121056" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="121057" i_stop="121150" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.918">
            <gDNA_exon_boundary e_start="121151" e_stop="121697" e_length="547"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="121698" i_stop="121786" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.903">
            <gDNA_exon_boundary e_start="121787" e_stop="122527" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120095" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120108" stop="120140"/>
              <exon start="120979" stop="121056"/>
              <exon start="121151" stop="121626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121052" stop="121056"/>
              <exon start="121151" stop="121533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121603" stop="121697"/>
              <exon start="121787" stop="122174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121615" stop="121697"/>
              <exon start="121787" stop="122390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121616" stop="121697"/>
              <exon start="121787" stop="122030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121636" stop="121697"/>
              <exon start="121787" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121636" stop="121697"/>
              <exon start="121787" stop="122358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121654" stop="121697"/>
              <exon start="121787" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121789" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121790" stop="122344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121795" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121823" stop="122412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121824" stop="122419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121824" stop="122412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121846" stop="122410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121886" stop="122495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121922" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265906" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121934" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121942" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121967" stop="122404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121990" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412717" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121997" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122012" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122024" stop="122434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122037" stop="122420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122062" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122062" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122063" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122067" stop="122527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122069" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122070" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122128" stop="122388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122148" stop="122428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATTGCGACTGAGTTTAAGGACACCTTGTCCATGAGTTTATTAACTTAATTCAAAATGAGTTTTTGGTTGTAATATTTTTTAAACTGACCCGGAGTTGGATTCCAAATTTG</gDNA_template>
            <first_frame> *  P  S  L  A  A  A  N  L  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  F  D  L  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  D  G  Q  D  L  P  C  W  F  H  G  *  D  T  S  T  R  L  F  F  H  F  I  T  F  R  F  L  F  S  L  F  L  Y  C  M  G  L  L  S  Y  *  F  I  Y  I  H  M  L  S  Q  F  R  R  Q  L  C  I  R  V  S  T  S  F  F  I  K  N  H  F  V  L  C  P  V  F  F  F  F  S  C  C  Y  V  C  *  I  P  *  Q  I  G  N  A  V  I  F  F  L  *  M  L  L  L  F  Q  R  Q  M  R  V  S  D  F  F  M  T  L  R  A  G  S  V  S  T  H  S  E  M  R  K  P  S :   S  N  F  V  R  F  D  Q  C  S  L  D  R  R  G  S  H  I  S  T  L  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  L  S  W  T  *  I  P  I  R  L  L  T  S  S  N  L  M  L  E  M  W  L  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  K  T  P  W  G  M  S  L  L  P  V  W  E  M  C  S  L  L  A  R  V  V  S  H  G  C  L  Y  L  R  G  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  P  N  Q  L  Q  L  L  K  N  L  S  L  N  L  R  *  D  *  *  V  G  P  Y  F  S  L  F  R  G  M  P  F  L  F  L  C  V  P  F  Q  Y  L  C  T  R  Y  C  F  T  Y  I  F  L  S  G  K  K  K  D  *  V  E  I  N  Q  L  P  S  M  L  *  Y  F  I  A  T  E  F  K  D  T  L  S  M  S  L  L  T  *  F  K  M  S  F  W  L  *  Y  F  L  N  *  P  G  V  G  F  Q  I   </first_frame>
            <second_frame>  S  H  H  S  R  Q  L  I  C  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M  G  K  T  P  P  L  D  C  F  F  I  S  *  P  L  D  F  Y  S  P  Y  F  C  T  A  W  V  C  Y  L  T  D  S  S  I  Y  T  C  F  H  N  S  E  D  N  C  V  S  E  C  L  Q  V  F  S  S  K  I  I  L  S  C  V  L  F  S  S  F  F  L  V  A  M  F  V  K  F  L  D  K  L  V  M  Q  L  F  S  F  C  R  C  C  Y  Y  S  K  D  K  *  E  F  P  T  S  L  *  H  *  G  P  V  P  S  P  L  T  Q  R  *  G  S  Q   : V  Q  T  L  *  G  S  I  S  A  V  W  T  E  G  D  P  I  S  Q  H  L  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  *  A  G  L  R  F  Q  *  D  C  *  L  H  Q  I  *  C  W  K  C  G  Y  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  R  L  P  G  A  *  V  C  Y  P  F  G  K  C  V  H  S  W  Q  G  *  *  A  M  G  V  S  T  *  G  E  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  P  I  S  Y  N  C  L  K  I  L  V  *  T  *  D  E  I  N  R  L  G  H  I  S  L  C  L  E  G  C  R  S  Y  F  C  V  F  H  F  N  I  C  V  L  G  T  V  L  H  T  F  F  C  Q  E  K  R  K  T  E  L  R  S  I  S  C  L  L  C  Y  S  I  L  L  R  L  S  L  R  T  P  C  P  *  V  Y  *  L  N  S  K  *  V  F  G  C  N  I  F  *  T  D  P  E  L  D  S  K  F  </second_frame>
            <third_frame>   A  I  T  R  G  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  L  *  L  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  R  T  R  L  T  L  L  V  S  W  V  R  H  L  H  *  I  V  F  S  F  H  N  L  *  I  F  I  L  L  I  S  V  L  H  G  F  V  I  L  L  I  H  L  Y  T  H  A  F  T  I  P  K  T  I  V  Y  Q  S  V  Y  K  F  F  H  Q  K  S  F  C  L  V  S  C  F  L  L  F  F  L  L  L  C  L  L  N  S  L  T  N  W  *  C  S  Y  F  L  F  V  D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  S  *  F  E  L  E  M  R  L  I  G  W  A  I  F  L  F  V  *  R  D  A  V  L  I  F  V  C  S  I  S  I  F  V  Y  S  V  L  F  Y  I  H  F  F  V  R  K  K  E  R  L  S  *  D  Q  S  V  A  F  Y  V  I  V  F  Y  C  D  *  V  *  G  H  L  V  H  E  F  I  N  L  I  Q  N  E  F  L  V  V  I  F  F  K  L  T  R  S  W  I  P  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121578" stop="121697"/>
                    <exon start="121787" stop="122221"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSYFLFVDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120096" stop="120140"/>
                    <exon start="120979" stop="121056"/>
                    <exon start="121151" stop="121369"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHHSRQLICRKTAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMGKTPPLDCFFIS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122242" stop="122451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEINRLGHISLCLEGCRSYFCVFHFNICVLGTVLHTFFCQEKRKTELRSISCLLCYSILLRLSLRTPCP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0160F05.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121377" stop="121577"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFILLISVLHGFVILLIHLYTHAFTIPKTIVYQSVYKFFHQKSFCLVSCFLLFFLLLCLLNSLTNW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="122442" PGL_stop="121986"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122442" e_stop="121986"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="122442" e_stop="121986" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122442" stop="121986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTGTCCTTAAACTCAGTCGCAATAAAATACTATAACATAGAAGGCAACTGATTGATCTCAACTCAGTCTTTCTTTTTTCCTGACAAAAAAATGTATGTAAAACAGTACCGAGTACACAAATATTGAAATGGAACACACAAAAATAAGAACGGCATCCCTCTAAACAAAGAGAAATATGGCCCAACCTATTAATCTCATCTCAAGTTCAAACTAAGATTTTTAAGCAGTTGTAGCTGATTGGGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTCCCCTTAGGTAGAGACACCCATGGCTTACTACCCTTGCCAAGAGTGAACACATTTCCCAAACGGGTAGCAAACTCATGCCCCAGGGAGTCTTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGAATTCCAACACGTCCCCTGTTTC</gDNA_template>
            <first_frame> R  C  P  *  T  Q  S  Q  *  N  T  I  T  *  K  A  T  D  *  S  Q  L  S  L  S  F  F  L  T  K  K  C  M  *  N  S  T  E  Y  T  N  I  E  M  E  H  T  K  I  R  T  A  S  L  *  T  K  R  N  M  A  Q  P  I  N  L  I  S  S  S  N  *  D  F  *  A  V  V  A  D  W  A  A  I  L  L  R  A  S  S  M  I  D  N  L  I  P  F  P  L  G  R  D  T  H  G  L  L  P  L  P  R  V  N  T  F  P  K  R  V  A  N  S  C  P  R  E  S  *  M  *  T  V  S  K  L  P  L  C  F  S  L  F  L  R  I  P  T  R  P  L  F  </first_frame>
            <second_frame>  G  V  L  K  L  S  R  N  K  I  L  *  H  R  R  Q  L  I  D  L  N  S  V  F  L  F  S  *  Q  K  N  V  C  K  T  V  P  S  T  Q  I  L  K  W  N  T  Q  K  *  E  R  H  P  S  K  Q  R  E  I  W  P  N  L  L  I  S  S  Q  V  Q  T  K  I  F  K  Q  L  *  L  I  G  Q  P  S  S  C  E  P  L  Q  *  *  I  T  *  Y  L  S  P  *  V  E  T  P  M  A  Y  Y  P  C  Q  E  *  T  H  F  P  N  G  *  Q  T  H  A  P  G  S  L  E  C  E  L  S  Q  S  Y  P  C  A  S  L  Y  S  *  E  F  Q  H  V  P  C  F </second_frame>
            <third_frame>   V  S  L  N  S  V  A  I  K  Y  Y  N  I  E  G  N  *  L  I  S  T  Q  S  F  F  F  P  D  K  K  M  Y  V  K  Q  Y  R  V  H  K  Y  *  N  G  T  H  K  N  K  N  G  I  P  L  N  K  E  K  Y  G  P  T  Y  *  S  H  L  K  F  K  L  R  F  L  S  S  C  S  *  L  G  S  H  P  L  A  S  L  F  N  D  R  *  L  D  T  F  P  L  R  *  R  H  P  W  L  T  T  L  A  K  S  E  H  I  S  Q  T  G  S  K  L  M  P  Q  G  V  L  N  V  N  C  L  K  A  T  L  V  L  L  S  I  L  K  N  S  N  T  S  P  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0160F05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 683 chains have been computed
$ 
$ memory statistics:
$ 2158864 bytes spliced alignments in total
$ 440 spliced alignments have been stored
$ 4906 bytes was the average size of a spliced alignment
$ 33848 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 2417 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 727 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:33:56
-->
