<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:29:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599805" ref_strand="+" ref_description="SGN-U599805 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcaataataccttctttcaggaggcctcaggcagtggacatttttcttgttaattactctctccatctcaatttatgtggcggtgtttgagaccacaagtttcaaaagcctttctttctttcttgcctcacataaattgggagaagtatataaagatgtcattctttttggaactgactaaaaaggaatgagtgtcacatagtttaggaaaaagggagtaccatgtttcatgatatataacaaattgtgggccttgaatgtctcatttattctgtaaaaagcattttgagtttcctagccgaattcctctaatgatatttaccttaccttacaagaaattcttgccgcgattgaaggagagaatcatgcccagatttgactgttcctcacttttgatcgtttgtgtaaattttataaaagtacgccattttttcatttgagttggacacaacattttgaagaaaatataatcattacatcctttctaataccaatgggatattttcatcttttcattggattgatcatgattgtagtttgttagtctttataccagcataatattgacttttatttcatgtaacctctctcaggagacccacatcactgcatgaccgaatgagggacagtgatgatgatgattatcaagatagagactatgatgttgcagctctggcaaataacttaagccaggccttccgctatggaatctataacaacgatgaacttgatgaggctcgtggttcacttgagcgggatgatgaggatgtctatcntgatgatgagtctgctgaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="3454" stop="876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3156" g_stop="3073" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3072" i_stop="2792" i_length="281">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2791" g_stop="2129" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="735" r_length="651" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2128" i_stop="1214" i_length="915">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1213" g_stop="1184" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="765" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-U599805" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3156" e_stop="3073"/>
          <exon e_start="2791" e_stop="2129"/>
          <exon e_start="1213" e_stop="1184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGTGTTTGATTGGGCACAAAGTTTAAGAAAGAATGAATTTTGAAACTTGTGGTCTTGAACAAGCCGTAGATATTTGTATCATTAAAAATCTTCTCATTAAGGGTAGAATGGGAAGTATAAAATTCATTTGTTACTCCCTCTGTCCCGATTTATGTGGCAAACTTTCCTTTTTAGCCTGTCCCAAAAGGAATGATACATATCTATATTTAGTACAATTAAACTTTTTAAAATGTCTATGTTACCCTTAGTGAGATGATTTATAGCCACACCAACATCTATGGCTTGTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATTGGGATGCAGAAAGTACGAAATATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGTATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAGGTGTTCTTCATATCCCTTAACAAAAGACAACATGATTGTGCATTTCTTGATCTCTCTCTATCTTTTAGCATTTAATAGTGCTGGCTAGGTTCCTGTGTTTATATCTGGAGAAGGTAATGACAGAAGGTTTGGAACATTGATAGGTAGTTGGAGAATTTATCTTTCTTATATTTAGAGTAGTTCTTTCTTAGAGCTGCATGCTATGTATAATCTTTAGAGATGAAGTAAAATGAGCACAGTAAATGTGCTTTTTGATTCATATTAAGTGCCCACACCTTTTTGCATATCTAATTATTTATAATTGAATTTGAAGTGTGGTTTTGATTTTTATCTGCAAGTCCCAATCACAGGAATGTTGTTCAGAATCGGTGGTTGAATTTTTGACTGTAAAAAGCCTCTGCTGAAAATGGTATAAGATCCATAATTCAATATAGATGTAGCAGGGTTAGACAGAGGGTCCGGGAATCTGTGCCAGCCTCTTGTAACTGTTATATGGTCATGGTATAACAGCCTAGATGTAGTAGGTTAAGACAGAAACCAGTGAGAGCTAGAATGAATTTTATTCTGTTAATAGCATCTTCCTAATTCTGTCATAATTAGGAATGTTGGTATTTAGTGATCTTCCTTATTAAATGACTTTCATTTTAAGTTTAAAGAAACCTTATCTCAAGTAGCCTAAACTATGGAGCACTCTGTAGATTGTCTGCAAGCAATTCAATACAAGTTATATCTTAAAGTGCCAAAACAATGGATGCTTGATTTTGCTTTTTTTTTTTCCTTTCCTGGTTTTTCTTGTTTTGAACCTTTTTTTGTTCAACTTCATCTTTAATCTTCACATATCAATTTTTTAAGCACATGGTCATTAAGTGTATAATCATTAAAAATGTACTAAAGGAAGACTTTATCTGCGTGCAGGCTCGTGGTTCACTTGAGCGGGATGATGAG</genome_strand>
        <mrna_strand>GCAATAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGT.........................................................................................................................................................................................................................................................................................GTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATT-GG--G-AG-AAGT-------ATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGGATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTGGTTCACTTGAGCGGGATGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569008" ref_strand="+" ref_description="SGN-U569008 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157350435|emb|CAO40415.1| (e_value=2e-74) unnamed; (*ATH) AT1G30470.1 (e_value=5e-68)  Symbol: None | SIT4 phosphatase-associated family protein, contains similarity to copper chaperone homolog CCH GB:AAF15286 GI:6525011 from (Glycine max); contains Pfam profile PF04499: SIT4 phosphatase-associated protein | chr1:10779153-10786648 FOR... ; (*SWP) sp|Q8R3Q2|SAPS2_MOUSE (e_value=1e-24) SAPS domain family member 2 OS=Mus musculus GN=Saps2; ">
      <seq>ggcttcttttttcttctcaaaggtccccaaaaaatacagcaaggaaaaaaaatgcttctttccaccgtctcacaattggtgctaagtataattcttgataacaattgaaccgaatccaatcttatcaaagactgctccccacctttttctagggcttcctgggttcaagatcattgttggggttgttttctttttgttcctagatccaaattgttgaaaattctcttctgggtcggttcttgattctgaaaaaatggctatgttttggcgtatggctggcctctccactgcttctccagtggagacaattttggataaggaaaattttgcactggatgagctcttggacgaggatgaaataattcaagaatgtaaagctcttaatggacgccttattaactttctgcgagaaagagctcaagttgaacaacttgtcaggtacatagtggaagaggctccagaagatgcagagaagaaacgaacttttaagtttccttttattgcttgtgaaatctttacatgcgaggtggacataattcttaaagcattggttgagaatgaggagctaatgaacctgctattctcattttttggaacctgagcacacacatagtactctgttggccggttacttcagcaaggttgtcatatgcttgttgctgcggaaaacatcagcttttatgaactacgtacaagctcatcaagatattatcaagaagttggttgatctcattggaattacatccatcatggangtgttaatccgcctaattggcaccgatgaanatttgtatagcaacttctcgganaacatgcagnggntnggaananacaaatgngct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="19290" stop="11868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18990" g_stop="18693" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18692" i_stop="15313" i_length="3380">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15312" g_stop="15209" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="402" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15208" i_stop="13838" i_length="1371">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13837" g_stop="13751" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="489" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13750" i_stop="13608" i_length="143">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13607" g_stop="13532" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="565" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13531" i_stop="13424" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13423" g_stop="13349" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="641" r_length="76" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13348" i_stop="12872" i_length="477">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12871" g_stop="12818" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="695" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12817" i_stop="12398" i_length="420">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12397" g_stop="12338" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="755" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="12337" i_stop="12254" i_length="84">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.354" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="12253" g_stop="12168" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="842" r_length="87" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-U569008" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18990" e_stop="18693"/>
          <exon e_start="15312" e_stop="15209"/>
          <exon e_start="13837" e_stop="13751"/>
          <exon e_start="13607" e_stop="13532"/>
          <exon e_start="13423" e_stop="13349"/>
          <exon e_start="12871" e_stop="12818"/>
          <exon e_start="12397" e_stop="12338"/>
          <exon e_start="12253" e_stop="12168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTTTTTTCTTCTCAAAGGTCCCCAAAAAATACAGCAAGGAAAAAAAATGCTTCTTTCCACCGTCTCACAATTGGTGCTAAGTATAATTCTTGATAACAATTGAACCGAATCCAATCTTATCAAAGACTGCTCCCCACCTTTTTCTAGGGCTTCCTGGGTTCAAGATCATTGTTGGGGTTGTTTTCTTTTTGTTCCTAGATCCAAATTGTTGAAAATTCTCTTCTGGGTCGGTTCTTGATTCTGAAAAAATGGCTATGTTTTGGCGTATGGCTGGCCTCTCCACTGCTTCTCCAGTAACCCCTTTTATTCCCTGACTCATATTTTTATACTTTTTTGTGAAAGTTTATGTACGATTTGAATGTTTGGGGTGCTATATCATCTAGTGTTTATTTATTGGAATTGTATTGGGTGGTTTGTTTTTTAAGAATTTTGATTAATGCAAATGGGTTTTTGTTGAATTTCTTGTTATGCATGTTGTTTTGTGTTTTAGCAGTCTTAATTTTGAATTCAGAATTGTGTAAGGGAAGATTGGTAATGTGATTGTTCTGGACTTTTATAGTGGGGAGTACTTTTTTGGACTGAATTTCTAGTGGAAGTTAATGTTTTGGGGGTCTGGTGTTTACTTCTTATATTCAGATTGTCTTAATTATGCAACTCAAAGAGACTGAGTGTTAAATTCCTTATTGAAAGAGGGTAAAATGAAGAGAGTTGAGTGTTAGATGGACTTGGATGATGGTGGCATTTTTAAAGATATTTTTTGGGTTAATTTTTAGAGCAATGGAACAGTGGCAGAGGAGAAGTTTATGATGGACTGGTGGGCCTTATGATTGGATCTAATTTCTTGAACAAATAGCTGTGGTTTGATGAATTATACATCTTTATAACTGCTAATTGAAGAAAATAGTACCAATGAAGTTCCTGTCTATTAGGTCCTCAATGTTGAACCGCAATTCTACTTTGTGCAGCATTGTGGAATTTTTCGAGGAATGTACTTTTTGTAACTTGCTTTTTGTCTGAACTAAGTGCTAGATTATGTTGCAAATTTTAAGCTATTCTGCTTTCTAGATTGACATCAACGAAGTAAATGATATCTCTTGGTAAAATTATGTTCTTCCCAATGCACTATTTCACTTCAATTCTTATGCCACATACTTGGGCAATGTACCTTTTGCCCATACTAGACACCTTTTCTAAGCATGCCCCGGTAGCCTTTCATTTGGAATTTGTTGTTTTTATGGAATTTAGAGGAGCTGATCCGGGGAATGGAAATCCATTTCTTTGTACCACATACATAGGCCATTTCAAGTCCTATGCCATATACTTGGGCAATTTACCCTTTTCCCATCCTAGACACCTTTTCTAAGCATCTCCAGATAGCCTTTCATTAAGAAGTTGGTTGTTTTTATGGAAGTTAGAGGAGCAGATTCCAGGAATGGAAGTCCATTTGATCGTGCTCTGAAACTTTAAGCCATATAATTGTACTAAATAGGTACAATATATATTTTTCCCCTTTACCCAAGAGAATTCCCTGAGGATCAGTGGCGCACAGTTAGAAACTTGGTGGATAACCCCCTTCTTTTTTACACTTAATACCAGACTTTTGTCTCTAGAGGGTTCAAAACTTGTTATGTGTGCCTAAACCACACATAAAATATAACACCGATAGTATAAGATATCTAACACCTATTTGTTGACTCAATTGTTTGCTAGCTTATTTAATGGGCTAACTTGATAAAGGCTTAACTAATTGAATAATGATGTGACACAATGGCTATGAGTTTTTTTTTGGGGGGGGGGGGGTAAAGGATAAATATGGAATTTTGGAACGAGGTGGAGAACTAGAGACATCACTTTGCCTTTCAGGCGTTGTTTAATTTTGGGGAAATAGATGGCGCGGGGATGACACTTTGAAAGATGATTTCCAGTGTCTCTATAGAATTTCTTGCCAGAGAGATAGTTCAACAAATTAGGGGGACATAGGCGGAGAGACTTTTTGGGACTTGAGCTTTAGAAGGATGTTAAATGATTGGGAAGTATCAATTGTAATTTTAATTGTCTAAAATAATAAAATGATTGGGGAGTAGGTGAGCTCCAAAGATTGTTAGTCTTAGTACATAGGCAAGACAACCCTATTGATAAGCTTGATGCATGGTGGTAGAGATTTAAGGGAAAATGGCATGTTTATTGTGAAGACTTTCTATGAGAATCTATTGCTTAGGGAGGAGCAAGTGTTTCCATGTAATGCAATATGGATCCCAAAGGCACCAAGGAAGGTGTGCTTTTCACTTGGTTAGCCATAAGAGGCTCGATTTTACAATAAAGAACTTAAAAAAAGCAGAAGATTGTATTCATCGGCTGGTGTTACATCTGCAAGGAGGCGGGTGAGGATGTGGATCATCTTCTCCTACATTGCAGTTTGACAATGAGTGTATGGTGGGATATGTTTAGGTGGTTTGGCGCTCCATGGTTATGGAAAAAATGGTGAAAGAATTGATGTTCAGTTGGAAGAGTGGGAGGAGAAGAAGACGAAGGGATGAAATATGGTGCAACTTGCATAATGTGGGTTGTCTGGAGAGAGAAGAATAAAAGAGCTTTTGAAGGTGTAGAGTCGAGTTCCCCTCAAAGTATCATTCATTCCCTTATTTTATTTTGGTGCACTCAGAAAGTCCCCTATTGTGTAGACGATTGGGTGGAGTTTTTAGAGATTCAGTTGATTGTGTAGATTCTTTACCTTTTGGTATACCACTTGTGTATGGTCATTTTATGGCCTTGTTTATTATATGAAATATGTTTACTTGATCAAAAAGATGATGTGACACAAAGGGATGGTTTCATGATGATAATGTAGAGTGAACATGTCAGTTAACTGGACTAATGTAGATTGTTGACATAACAGTTAAATTGACATGTACTGTTCCCTAAAAAGCAGTTGTAGAGTGCTGATTTTACATGTTAGCTACGGGGACAAATGGATCTTCTTCTAGACAATGTGGATGTGTAGTCACTTTATATTACACTGGAAGGATACAGGGTTTCACCACAGCAATCAGTGTCATCTAGATGGTTAAAAGAGACGAAAATAATTGAATTATTAGGAAAGAAGAAAAAACTTTTTCTGTGCTCATGACCTATGGCAAGTCTACTAAATTGACATGTACTGTTCCCTAACAAGCAGTTGAGAGTTTCTGATATGAAGGATAAGGAGGAGACAAAAAAGAGAACTTTTCAAAGATTTTAGTAACAACGTAGGGACTCCATGTATAGTAGTTTGTCCTTTGGAAAACACAAGGTTCTTTATTAAATTGGACCTTGCTAGTGTTATTTAAACAGTAGGTAGGCAGTGAATGTATGACAACTATCTCTCAAGCACATCTTTAGTTCCAATCTCAATAATTAAATTGAATATTCTTCATCATATATTATGGAATTTAAAAATATTCTGCAACTTTTGCTTTGGAGTATTTCAGAAATATTCTTCTACATAAATTTTATGGATGCAAGCGCAAATTAATATTTGATTTCATTACTTCTCGGTTTTCAATATTGCTTACTCCAAAGCTTTGTATCAGTGTTCAATTGAATATTGATGTTGTTTCTCAATAAATAATGTGTGTGGATATTTTATAATAAAAATAATGTGCATAGATTTATAGGATACACTTACTATTTTCAGGTGGAGACAATTTTGGATAAGGAAAATTTTGCACTGGATGAGCTCTTGGACGAGGATGAAATAATTCAAGAATGTAAAGCTCTTAATGGACGCCTTATTAACTTGTAAGCACCTTATTCGCTTGGTATGCTAGATATAAGTTGTAATAAAATCAAGTTCTATTAATCTTGGATGTGATGTACAAACTACAAAGTATATCCCAACCATTGATGTTTCATGGAAAATCCATTTAAAGTAAATATCTTTTATTGTGAAAAGAAAAGTCTGGATTTGCTGCTGTATGATGAGGTTTATCTGAGGGAGTCTAGTGATGCATGCGTGCATTTGAAGCTTTATTTACGGTTTAAAATTGGCTAGTCTGGATTTAGTAAGAACAAGTGGTTAACTTTGTAATTCTGGTATGTTAATTAGGACTACAACAATTTTAGTGTGCACCAAATAAACATGCCAAGTTATCCTTCTTGAACACAATTTTTTGTTTTTTGTTTTTGTGGGTAGGGTGGGGGTGTTGGTGGGCTGAGGCAGTGCTTGTATTTTAACAAAACTTAGTTTTGTTTCACTATAGACTGTAAAGATCAGTGTTCTTACGAGTTATCAATTAAATGGTGAAGCAATGGGCTTCATAAAAGTGTGCACTTGAAACAATGACAAGCAATGTGATCCCAATGCGAAGTAGTCTCGGTTATTTGAATCTCAACTTTGAATAGTCGGATTAATATTAGCGTTATTGTTTATTGGATTGTGTAATCAGTTATTTTAATTGCATTCTGATCATTATTTTACTAAATTCATGTAATTTTGGTGATCTTTTTAATGTTGTGAATTCTGAGTTTTACTTCAAAGAAGCATATGCTTCACTTCCAGTATTTTGCTTTAAGCATCATGGACCTTGTCGCTATTTTTTTTCGCTTTTGCTTTTTAAAATACGAGTAAACCCTTCGGGGTGACCCAGTGGTTTGAGCTGGGACTTCCATGTTGGAGGTCACAAGTTCGAAACCCCTTGCCAACGAAAGCAAGGGGTTTGCCTTCTGGGTAGAGCTCGTCACACCAGGCTTGCCTAGTGCGGGTAACCTCTCCTATGTGGTCTGCGAACTATCGCATAGGAGCGGGGTTTTACCCTTTGCGCCCCCAAAAGGGTGGCGGCTGCGGGTTTTCCTTGTCGTCAAAAATAAAAATAAAAATACGAGTAAGATATTTTTGTTTGTTTAGACAATATGGAAGAAGTATCATGTGATGACAGGCTTCTATTTTGTAACTGTCTAACTTTGGGGGACTACCCAGTTTGGTATAGAATACCTGCTAATACATAGAATGTCACCATTATAAAAATGGTAATATTATGGAACTTCTGGTGCCATCTCTGCACAAAATTTTTCTTCTTGTAGGATTTAATGGTCATTTCTTGGAAGAACCTGTCAAAAAAGGAAGTCATTCCTTGGAAGAAACTGATCATATTATGCTTTTCTTTCTGACAGTCTGCGAGAAAGAGCTCAAGTTGAACAACTTGTCAGGTACATAGTGGAAGAGGCTCCAGAAGATGCAGAGAAGAAACGAACTTTTAAGTGAGTGTCTGACTGGTGCTGGAAAGTTATTTACATTTCATATGTTATAGGCTCTGAATATTTCTTTGGATGAAAATATGAGTTCTCTTTTTCCTTGACCCCAGTGCATGTATGAAAAGATATCTTGTTTTACTGTGCCACAGGTTTCCTTTTATTGCTTGTGAAATCTTTACATGCGAGGTGGACATAATTCTTAAAGCATTGGTTGAGAATGAGGAGGTATTCACTCTTCTTTTTTTGTCATATATCTTTATTCTGCCTTTGTACTATATGCTCAGTTCCTTGAATATTGTTTATATAAATTGGCTTTGTCATTTTGGATGTCAGCTAATGAACCTGCTATTCTCA-TTTTTGGAACCTGAGCACACACATAGTACTCTGTTGGCCGGTTACTTCAGCAAGGTATCATTGACTACTAGATACATAAGTGTGAATTATGCTTCACTTAGCTATGTATTCCTTTGTTCATATCTCTAAATATATTTAACTGGAAGGGGAGTGGTTAATAAGTTTGCAAGGTTGATTCCTTTACTTATTGGGGAAAAAGTTTGCAAGGTTGACAACTTCTCTGTTGGCGGTACCACGTTTTAGTTTTGAAAAAAAAACTTCTCTTTGAAAAACTATGTTTATTTTTCAATTTTATCCTGTCTAGTTTCTATCGTTTTGCTCCTTTTTCGACCAAAAGCAAGGTGATAGTTGCATGCTAGATCTTCTGTAAGACTGAATGAAGGACTTTACTTGCTGGATTTTAGGTGAAAACAATACTGCATTAATATTTTCTGGAAGTACTTCCATTTTTTAAGGTTTATTTCTTCTGTGAACTGTTATTATGATTTTCAGTTTCTACACTGTACTTGATGCCCAAGTTTCTTATTTTAGGTTGTCATATGCTTGTTGCTGCGGAAAACATCAGCTTTTATGAACTACGTACAAGTAAGTCTGCTGCTTCTTATTAGCTATCACGATTGATTTGCATTACAAAAACACACATATAGGAAATGATTGGATGTTTATGTCAGTCGAGGTAAAGCTGGTCTATGGATGTCCGAATGAAACCTTGCTCCCTTTTAGTCTCCAATCCATTTCTTTTATGTTCTTTAAGATGGTGGAGAGTGTTCGCCTGTTGTGTCTTGTTTATATCTTCTTTGGTTTGAGATGCCATTTCTTGTGCGAGTAACTGGTATGGTCTACCAATAAATTCTTTATGTATTTATGTATCAATCATCTGGCTACTTTTTTAAAAATTTATTGTCCCTTGTAAAATGGTGAAACATTGATATCTACCGCCTCTTAATGCTTTCAATAAAAAGTCAAGCACAGTCAAGCTAATAATTATGGTTTATTCTCTTGTAGGCTCATCAAGATATTATCAAGAAGTTGGTTGATCTCATTGGAATTACATCCATCATGGAGGTTTGTAGTTTTTCAAATAGTTTAAGGCATGTTTTGTTTGTTTAGCATGACTAAATCCAGAAGTTCCAATGCTTTTGATTTAAGGTGTTAATCCGCCTAATTGGCACCGATGAACATTTGTATAGCAACTTCTCGGAGAACATGCAGTGG-TTGGAAGATACAAATGTGCT</genome_strand>
        <mrna_strand>GGCTTCTTTTTTCTTCTCAAAGGTCCCCAAAAAATACAGCAAGGAAAAAAAATGCTTCTTTCCACCGTCTCACAATTGGTGCTAAGTATAATTCTTGATAACAATTGAACCGAATCCAATCTTATCAAAGACTGCTCCCCACCTTTTTCTAGGGCTTCCTGGGTTCAAGATCATTGTTGGGGTTGTTTTCTTTTTGTTCCTAGATCCAAATTGTTGAAAATTCTCTTCTGGGTCGGTTCTTGATTCTGAAAAAATGGCTATGTTTTGGCGTATGGCTGGCCTCTCCACTGCTTCTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGACAATTTTGGATAAGGAAAATTTTGCACTGGATGAGCTCTTGGACGAGGATGAAATAATTCAAGAATGTAAAGCTCTTAATGGACGCCTTATTAACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGAGAAAGAGCTCAAGTTGAACAACTTGTCAGGTACATAGTGGAAGAGGCTCCAGAAGATGCAGAGAAGAAACGAACTTTTAA...............................................................................................................................................GTTTCCTTTTATTGCTTGTGAAATCTTTACATGCGAGGTGGACATAATTCTTAAAGCATTGGTTGAGAATGAGGAG............................................................................................................CTAATGAACCTGCTATTCTCATTTTTTGGAACCTGAGCACACACATAGTACTCTGTTGGCCGGTTACTTCAGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCATATGCTTGTTGCTGCGGAAAACATCAGCTTTTATGAACTACGTACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATCAAGATATTATCAAGAAGTTGGTTGATCTCATTGGAATTACATCCATCATGGAN....................................................................................GTGTTAATCCGCCTAATTGGCACCGATGAANATTTGTATAGCAACTTCTCGGANAACATGCAGNGGNTNGGAANANACAAATGNGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568794" ref_strand="+" ref_description="SGN-U568794 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157350434|emb|CAO40414.1| (e_value=6e-26) unnamed; (*ATH) AT4G05410.1 (e_value=4e-22)  Symbol: None | transducin family protein / WD-40 repeat family protein, contains 6 WD-40 repeats (PF00400); U3 snoRNP-associated 55-kDa protein, Homo sapiens, gb:NP_004695; Vegetatible incompatibility protein HET-E-1 (SP:Q00808) (Podospora anserina)... ; ">
      <seq>ctaaaaccctagttactacattgctgttcctttgcttttatttcaatatcagtccaaatttgcaactgattgtaacatatttctgcaaaagttgtgaactttaagctcacaattgaatcatgaagaacctgaaaaagaagaaagcttcagctcaaaacacccagaagggtagtaagaagagattttcaattgaaagcgacccatttttccatgaagacaacgacttgaaaaggcgaaagagatttggagatgatgaagatatagagagcagtgatgattcagaggacatttatgggtctgatgatgaaggagtggataggaatgagcggaaggatgaagaagaggaagaggaggaggagacggcagctgagaagagaaaaaggctggcggagacttttttgcatagtatgagggagtcgaagaggaaggaagaggaagaaagagagagtgaagaggaatatgatagagaggagagggaagcaatgagagactcatggatggtagacatgttgcagaaggagcagatggagggcagtggtcgttccagaaaagctattgcttccaggattcaaaaacccaccgagggatttcaccttttagtgaaacatcgacagtccgtaactgctgtgactttatctgaggatgacttaaagggattttcatcttctaaagatggcactattgtttgctgggacgtggacagtggaaagacagaaaagtatacatggcctactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="29446" stop="27241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29146" g_stop="28582" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28581" i_stop="27712" i_length="870">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27711" g_stop="27541" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="736" r_length="171" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-U568794" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29146" e_stop="28582"/>
          <exon e_start="27711" e_stop="27541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACCCTAGTTACTACATTGCTGTTCCTTTGCTTTTATTTCAATATCAGTCCAAATTTGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACACCCAGAAGGGTAGTAAGAAGAGATTTTCAATTGAAAGCGACCCATTTTTCCATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATAGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGCGGAAGGATGAAGAAGAGGAAGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAAAGGCTGGCGGAGACTTTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAGAGAGAGTGAAGAGGAATATGATAGAGAGGAGAGGGAAGCAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGTTCCAGAAAAGCTATTGCTTCCAGGTGTGTGATAAATATGGATTGTTATTTCATTTTACCTGGATTTACTCTTTTCTGGCCTGGATAGCTGTAATTGCTATTGCTTCCAGATGTATTTTAGTAATTCATGTAATTGCTGGATTTTTGGGTTCCCAAGGGGATGGTGGTGTGGTTAGGTATGTATGCAAGTAACAACTTAGAGGTCATTTGGTTTAGGGACGAGCTATGCAGGGGTTATATGTGGAGTGATTAGTAATGCAATGATAAAAATGTTTGGATTGTAATGTAGGGCATGTATAATGTAAAGATTATGCCTTTTTGAATGTTTAGTTTCATATATTACATATTACTAGTGTACAGTGTATAACTAAAATATTTGTTATACTTTTTTAACAAAATAAACATTTGCTTGTTATAATGTTGATTTTTAGGTGGAGATTCACCTCCTTAAATCCCAACCAAACATTGTATAATTTATACTAATTTTAGTGAGATTGTATGTCCTACAATCTAAACTAAATGGCCCATGTTTGAATCCCATGCACAAGCTGATCTAGACTCCATTATCACTGAGCGAATGAATTGAATCAGTTGATTATTTTCAGTGGTCAACCAAATTGAGTAGAAGCGCCATGAATAGCCCATCTTTGTTTCTGTTTTAATGTTAGAAGTGTTGTGCTTGCACATAGGCTATAGCTGAGGTTCTTTTGAGTTGAAAGTTGCTACTTCATTATCTACTATCTAGATAATCAAATAATTGGTACGTATGCTGTTGTGTTCCAGTAAAACCATGATAGGAGATATTGTTCCATTCTTGCAAGTGGTTAAATAAAAAAGGACATAGGTTTTACTGTTTTAGATAGTTATTGAGTTGTACCATTATTCATTCTCCAGGATTCAAAAACCCACCGAGGGATTTCACCTTTTAGTGAAACATCGACAGTCCGTAACTGCTGTGACTTTATCTGAGGATGACTTAAAGGGATTTTCATCTTCTAAAGATGGCACTATTGTTTGCTGGGACGTGGACAGTGGAAAGACAGAAAAGTATGCATGGCCTACTGA</genome_strand>
        <mrna_strand>CTAAAACCCTAGTTACTACATTGCTGTTCCTTTGCTTTTATTTCAATATCAGTCCAAATTTGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACACCCAGAAGGGTAGTAAGAAGAGATTTTCAATTGAAAGCGACCCATTTTTCCATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATAGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGCGGAAGGATGAAGAAGAGGAAGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAAAGGCTGGCGGAGACTTTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAGAGAGAGTGAAGAGGAATATGATAGAGAGGAGAGGGAAGCAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGTTCCAGAAAAGCTATTGCTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAAAAACCCACCGAGGGATTTCACCTTTTAGTGAAACATCGACAGTCCGTAACTGCTGTGACTTTATCTGAGGATGACTTAAAGGGATTTTCATCTTCTAAAGATGGCACTATTGTTTGCTGGGACGTGGACAGTGGAAAGACAGAAAAGTATACATGGCCTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573905" ref_strand="+" ref_description="SGN-U573905 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|118486233|gb|ABK94958.1| (e_value=4e-93) unknown; (*ATH) AT1G74320.1 (e_value=2e-91) | Symbol: None | choline kinase, putative, similar to GmCK2p choline kinase gi:1438881:gb:AAC49375 | chr1:27944334-27946865 FORWARD | Aliases: F1O17.1, F1O17_1; (*SWP) sp|Q9Y259|CHKB_HUMAN (e_value=4e-30) Choline/ethanolamine kinase OS=Homo sapiens GN=CHKB; ">
      <seq>atattctatagttctaatttatatccacaaagtgaaagaattatgatgatgatgcaagatgtttggaatcagttaggtccagccattgcaacaatcatgtttgcctggaccatgtaccagaactatttccctcatgaacttcgtggccatattcgaaggcatttgattgcatgtgattccatggaaaattcaaaatcagtgaacaaggaggacgtgattcctgaagaagcgaaggtgaaattgaagaaattggcgtcagaatgggacgatatagtggatccgaatgcattagatgtgttcagattgaagggcgcgatgacgaacgaggtgtatcaaatcaaatggcccagtaagaacccggaaaagcaacgatctaggaaggtgttggtgaggatctatgggaaaggtgttgatgtgttctttgatcggcagaatgaaattaagatttttgagtttatgtctaagcaaggccaaggacctcgcttgcttggtcgatttcagagtggtcgtattgaggaattcattcgagctcggacattatcagctcctgatctgcgtgatccagagatatcttccttgatagctgccaaaatgagagaatttcatgtgcttgatatgcctggtcctaagaccgtcatcctctgggatagactgcaaaattggcttaatgtagccaaaggtctggcttctactgaagaagctaaggactttaagttggaccttctaaaagatgagattgtattgttggaaaagaatcttgctggcaatcatctaagcacgggatgctgccacaacgacttgcagtatgggaacataatgatggatgaagagacaagatcaataacctttattgactatgaatatgctggttacaaccatgttgcatttgatatagcaaatcatttttgtgaaatggttgctgactaccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="46862" stop="54500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47162" g_stop="47319" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47320" i_stop="49811" i_length="2492">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49812" g_stop="50187" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="534" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50188" i_stop="53202" i_length="3015">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53203" g_stop="53324" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="656" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53325" i_stop="53428" i_length="104">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53429" g_stop="53624" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="852" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53625" i_stop="54121" i_length="497">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54122" g_stop="54200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="853" r_stop="931" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-U573905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>931</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47162" e_stop="47319"/>
          <exon e_start="49812" e_stop="50187"/>
          <exon e_start="53203" e_stop="53324"/>
          <exon e_start="53429" e_stop="53624"/>
          <exon e_start="54122" e_stop="54200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTCTATAGTTCTAATTTATATCCACAAAGTGAAAGAATTATGATGATGATGCAAGATGTTTGGAATCAGTTAGGTCCAGCCATTGCAACAATCATGTTTGCCTGGACCATGTACCAGAACTATTTCCCTCATGAACTTCGTGGCCATATTCGAAGGTATACCGATAAACTTGTGAGCTATATCTATCCTTATATACATATTACATTTCATGAATATGAAACTGATGGTTGGTTTGAGCGTAGTAAAGCTTATGAAGCTATCGAAAGGTATTTAAGTAAGAACTCTAGTATACAAGCTAAGCGTCTAAAAGCTAATGTAGTTAAAGATGGTCAATCTCTTGTTCTGTCGATGGATGATCATGAGGAGGTAACCGATGATTATGAAGGGGCGAAGGTTTGGTGGATATCTAGCCAAAAAGAAGCTATTAGACCGACAATTGCTTGGTACCCGAGGGATGATGAGAATAGGTATTTCAAGCTTAAGTTTCATAGGAAAAATCGCGATCTTATAACCATTTTGTACTTGAAATATGTGTTGGATGAAGGGAAGGCGATTTCTGTTAGAGAAAGGCAGAGGAAATTGTACACGAATAATAAGGGATCGGATGGTGGATTTGGTGGTTATAACAGGAGAATGTGGAGTCAAGTAGTGTTTGAACATCCGTCAACGTTTAATACTTTAGCTATGGAGCCAAACAAGAAACAAGAGATTAAGGATGATCTCGAGACGTTTTCTAAGTCAAAGGACTACTATGCTAAGATTGGTAAGGCGTGGAAGCGTGGTTATCTTCTTTATGGTCCTCCAGGAACAGGTAAGTCTAGCATGATTGCTGCTATGGCTAACTTCTTGCAATATGATGTGTATGATCTCGAATTGACAGCTGTTAAGGATAACACAGAGCTAAGAAAGTTATTGATTGATACTACTAGTAAGTCTATCATTGTGATTGAAGACATCGATTGCTCCCTTGATCTTACTGGCCAAAGGAAGCCGAAGAAGGAGAAGGAGAAGGACGAGAAAGTTGAGAAAGACATCATCAAGGAGGAGTTGAAAAAAGCAGGAGAGGAGAAAAAGCAAAGTGAGGTAACTTTATCTGGGCTTTTGAACTTTATTGATGGATTGTGGTCAGCTATTGGTGGTGAAAGGCTTATTGTTTTCACAACTAATTTTGTCGAAAAGCTTGATCCTGCTTTAATTCGGAGGGGGAGAATGGACAAACACATTGAGCTATCATACTGTTGTTTTGAGTCCTTCAAGGTGCTTGCTAATAATTATCTAGACGTTACGTCTCATGATGATTACTTTCCTGAGATTCATCGTTTATTAGGGGAAACTAATATAACTCCAGCTGATGTTGCTGAGAGTTTGATGCCCAAGTCTTCTAAGGAAAATGCAGATACTTGCTTGGAGAGGTTAGTTAAAGCTATTGAAACAGCAAAGGTGGAAGCAAAATTGAAGGCTGAGGAAGAAAAGGCAGAGAAGGAGAAGGAAGAGAACGAGAACGAAAAGAAAAAGAAAGAAGCAGCAGCTGCTGCAGAAGACGCGAAAAGGGCTGATGATGTGAACGAAAATGGGACGTCGATGGAGACTAAGGAAAAGCCAGAAAGTGATGGTGCTAAGGAAAATTGCAAGTCTGAGATAGTAATGGACTAATGATGATGTTAGTAAAGGGTTAGTAAAGTTTGATCATGGAAATATTTGATCAATTAGGTGTTGCCCATAGAACCAGGATTCAGATATTTTGAATAATTTTGTTGTTGAACATTGTTGATTTTGTTATTCAAGAGATACTATGATGATGTAGGAAGTGGTTGTTGCATAATACATAGTGTAGTATCTTATCTTTTTGTGTAACAAAATATTTACATCTTAGTAACTTGGTGATATATGTCAATTTCCTCTTATATTCTGAAGTTATTTTCACAACTTCTAGTGCACGTGCATTGCACATGTATGATGAGTCGTGTAATATTGATCCAGAATTTCTATTAAGGGGTTTCGAAAAAAACAGAACAACTTATGTGCACGTGCACTGCACACATGGTATGGTGAGTCGTGTAATCAATGGTGTGTCTAAAATTTGATCTTGTAATCTCATGGTAAGTTTTGAAACCCTCAACCATTAAGCCAATCTTTAATCTTATTACATTTAGAAGGTTCAAATCAATATATAAATGTATAAAAGGTATAAATACAACACAATTTTTTATCAAGATGAGCATTATCTAGGTCCGCCCGTGCGTGTAATAATAATACAAAATTCATTGAGAGAAAGGACTCATCATCAACGAGGAAGGCATAAATCTATATTTAAATTCTTGATAAGAAAAATAAGTGATTTTCTAAATTTATTTTTTCATGTTTGATTAGTAAGTACGGTTCCAAACTCTTGTCCAAACACAAGAGCCCAATGAATTTGGTCTATGTTTAATTCAAAGTCGAGTCATCATAATTTAGGATCGAGTTGGACATTAGATTTCGAATTAGATTGAGGCTAGAGTCGAGTCGCCAATAAAAAAAAAGAAAAATATTGTGGGGTAACACTCTTACGAAACACACCCTATATAGGTGCCACGTGAGGCAATAAATATGACCAGCACATTCTCAGCATCTCTTTGGCACAAACATAACTTCAAACATTTCGCAGGCATTTGATTGCATGTGATTCCATGGAAAATTCAAAATCAGTGAACAAGGAGGACGTGATTCCTGAAGAAGCGAAGGTGAAATTGAAGAAATTGGCGTCAGAATGGGACGATATAGTGGATCCGAATGCATTAGATGTGTTCAGATTGAAGGGCGCGATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGGGTTAGTTTTTTTTCTTTCTATTTGAAAACAACATTTTTCTTGGACCTGAAGTTTACATATGGATTTTTACAATTTTAGTGATCTGCATGGATGTGTAAAAATGCATTTTAGCTGAGATTCTCGTTCGATTATCATTAGTTTAACATGGAACCGGGATGTCCAGGCCATTTTTGGTACATCTGACTAATTCCACTGAATACATGCCACCTCCCTACTACAGATGGTTCTATGTAACTCTATCCACCAAGTTATCCACCAAGTCTAGGAAGAAATCACTAGTGTTTTTGGTACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACGACAGGTGATTCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACAAAGAAATCGCTAGTGTTTTTGGCACATTTGACTAATTCCACGAGCTACGTGCCACCTCCCAAGTCCAACTACAGGTGGTTTTACTTAACCCTGTCTACCAAGTCTAGGACATATAGGAAGAGATCGCTAGTGTTTTTGGCACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACTACTGGTGATCCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACGGAGAAATCACTAGTGTTTTTGGAACATTTGACTAATTCCATGAGGTACATGCCACTTCCCAAGTCCAACTACAGGTGGTTCTACGTAACCCTGTCGACCAAGTCTAGGACATATAGGAAGAGATCACTAGTGATTTTGTCTTTGTTGGAATTCGAACATGAGACCTCATGGTCCTCAAACCACTGCATTGACCAATAGGCCCCATACTCTTGGGTGCTAACATGTATTATTTTAGGATGGATGGAGTATCTGATGGTGATCATCATCATCCTTGTGAATATTTTGTTTCTTTTTTTCCAGCCTGCTGTTGCTATTGTTTCTGTTTTTGTTATGACTGCTACAAGAATGGCGTATGATGCTTTTTAGCTGATACTTTGTGATTAAGAAGTGATTTTTCTGGCATGCACTGCTGGGTACAATTTGATAATATGGTATACAGTATAATCCTCAATATTGTATATATGCTTTTGTTTTCTCGCTGTTACTCCACTTTCCAGTTAAAAACAAAGAACCCATTTTGGATGTAAATGTAAGGTCTAATGCCCAAAAATAGACCATAGTATGATTTGATCATGTTTGACATATGTTCTTGCTTGATGACTCTATGAGGCGGAGGGGCAGCATAATAACCTTTGGCGGTTGGCCTATCAGTGTGATGTTGTTAACTTTGTTACTCAAGTGCAATCATAGTTATTTGAGGCACAAGATTTTAGGTTTTAGTTAGAGTTTAATACTCCCTGTATCTAAAAAGTTTAGAAGTATCTAATTCGGTCATCATTTTCTTCTCCATTCCTCTAGTTGGCAATGTCAGATGCTAACAATTTACATGTAAATGAGGGAGAATTTAGGGGTTAAGTTTCACTGGTACTCTATATTCATCCTTCCCTTCTCTGTGCTGTGTAATTTTTTCCTGTTGTTTATATACATCCGTGTACATAAACATTTGTGCAACAGAAAATTTAATAGGATTTCTCTCTTGGTATTTAGAATTTTAAAATTTTGACAAGATTCTGATAGTTTTCGTTGATCTGATAGTATCTCTAGGATGATGCTTTGCTAGATCCTGATATCCTCATCTAGGATCCAGAAGAATAATCACCTAGATGACCAGCTTAATCAACTGGTTAATTTCATAAATTTCTGTAGTATGCTTACCTTGATCCGAATTTGAAGCAAGTTTCTTAAATGATAATTTTTCTGGGCCTTCACAAGTGATTTTGTTTCAATACCACCTCTTCTCAAAGACTACATAAATTTCTTTTCCCTTTACTGAAAGGAATATATACCCGTTTGCTGTTTCTGCATAATATTTCGAAAGAATGATTGGTTTGGTAAAAATTTAGATCAAGTAATAGCTGCCAATACATAATTAACCTTTGTTATTCATATAATTCTTGTTTGGTATAAGCTGAACTAATAGGTCTAACCAAACATAATAATCTCGTCTTTCTTGCCCATTATCCTAAAAAACCAGCAAAGGGGTTCCTTAATCCATCTCCCCCACTACTGGTTACTGCTGTCTCCATGTTTCATGTCCATCAATAAACTTATTAGCACAGGATAAAGAAGAAATTAAAGGTGAAATTACTGCCGTGATTAATTGAAAGACATGTAAGAATTTTGAAGGAAGAAAATCGAAACAGATGAACAAGTTGGGACGCATAAAAAGTATTTCTGTTGAGATGAAGGATGTATATGTGATGTGGGGCAAGGGCAGCCTTTTCAGGTCACAACCAAGTGACCTTATGCTGCCTGGGGAAAGCTACAGGGTTTGAGGATACCAGGAGAGGGGTTGCGTAAATTCTGAATGATATGAGAAGCGATCTAGATTAACAGTTAAATGCATAATATCCACTTATATGTTAAGCTTATTAAACTAAGAACTCCAAGCTTTCTGTTAGCTTATCCGCCTCTCCTTAGAAAAAACAATTAATTTGGGGTTTTGAGCCCTCTCCTAGTGGTTTCTTATATGATGCATTCAAGTTAACCCACTATTTGGTTTTGTTTATTGGTGAAGTTCTGATCCGCCACCTCTGGATAATCTTGATGTGACTGGCTGGCTTAGATGCTCAAAGACTTATGTTTCATGTTAGTTCATAGTAATACTTTGACAAAAGCATCTGGCCTCCCTTTGCCAAACCTAATTATTATGAAGCCAAGCAGATTTAGATTCTTCAGAGCTCATGATCACCATATTGCAGTTTCTTTGTAAGAGCTCCTGGGATCGTCAAAGTTTGCCTGGTTCCTCTAGGATTGCCTAATTTTCCTAGGTTTATCTCATGCTTGATTGACACTATTCTTAACCTACCTCTAATCTATTATTATCTGTGATGCTGTTGTAATTACTGATACTTCAGGAGAATGGGCACATTCATTAAATGTAATGCAATCTCCATGATTGGTATTTCAGACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCAGTATGCTCTTCTTTTTACTGTATATATGATAAATAAAAACTGCTAAATTATGTTTATCTTATACCAAAATGTCTAAATAACCTTTTGTTCTCGTATTGCTCTAGAAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCAATCATCTAAGCACGGGATGCTGCCACAACGACTTGCAGTATGGGAACATAATGATGGATGAAGAGACAAGATCAATAACCTTTATTGTAAGTACTAAGTTTTTTATTCATCAATGTTCAGATGAAAAACTAAGAGGACAAATACAATTTACTAAATGAGATGCATATCTCACTAAATTTTAGCTATAGCAGTGTCTGCATGTGGTGATTACATCTAAATCTAATTTGGGCTTCCATGATCAATAACTAGGCAGTGCTTTATCCTGACATGTTTGCTGCAGGATGTAGGTGGGTCCTGGTTCAAAAACTTCTTCAAGCTCTTACTTATTTAGGAGCTGCACTTTTGTTTCTCGCCTTTGTATTTTGTTTCAGTTATTGATCATCCACTTGATAAGGAGCAAAAGGATAAGATAAATATTTGAAAAACCTAAACATTTCAAGAAAAATTGACGGACTTTTCAATGATAAGTTCTGTTTCCTGCTAGGTTGGCAATTGCCTAATTTCTGCAAATAATTCTTGCTGTTCATACAGTTATTATTTGGACTTAATTTCTGGTATTTTCTTTAATCTTTCCTATTAACAGGACTATGAATATGCTGGTTACAACCATGTTGCATTTGATATAGCAAATCATTTTTGTGAAATGGTTGCTGACTACCATA</genome_strand>
        <mrna_strand>ATATTCTATAGTTCTAATTTATATCCACAAAGTGAAAGAATTATGATGATGATGCAAGATGTTTGGAATCAGTTAGGTCCAGCCATTGCAACAATCATGTTTGCCTGGACCATGTACCAGAACTATTTCCCTCATGAACTTCGTGGCCATATTCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGATTGCATGTGATTCCATGGAAAATTCAAAATCAGTGAACAAGGAGGACGTGATTCCTGAAGAAGCGAAGGTGAAATTGAAGAAATTGGCGTCAGAATGGGACGATATAGTGGATCCGAATGCATTAGATGTGTTCAGATTGAAGGGCGCGATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCA........................................................................................................AAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCAATCATCTAAGCACGGGATGCTGCCACAACGACTTGCAGTATGGGAACATAATGATGGATGAAGAGACAAGATCAATAACCTTTATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATGAATATGCTGGTTACAACCATGTTGCATTTGATATAGCAAATCATTTTTGTGAAATGGTTGCTGACTACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571250" ref_strand="+" ref_description="SGN-U571250 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|142942407|gb|ABO92982.1| (e_value=6e-25) putative; (*ATH) AT3G28540.1 (e_value=8e-20) | Symbol: None | AAA-type ATPase family protein, contains Pfam profile: ATPase family PF00004 | chr3:10695681-10697360 FORWARD | Aliases: T20D4.4; ">
      <seq>aggaaattgatatatatcaccaagttactaagatgtaaatatttgttaccacaaaaagataagatactacactatgtattatgcaacaaccacttcctacatcatcatagtatctcttgaataacaaaatcaacaatgttcaacaacaaaattattcaaaatatctgaatcctggttctatgggcaacacctaattgatcaaatatttccatgatcaaactttactaaccctttactaacatcatcattagtccattactatctcagacttgcaattttccttagcaccatcactttctggcttttccttagtctccatcgacgtcccattttcgttcacatcatcagcccttttcgcgtcttctgcagcagctgctgcttctttctttttcttttcgttctcgttctcttccttctccttctctgccttttcttcctcagccttcaattttgcttccacctttgctgtttcaatagctttaactaacctctccaagcaagtatctgcattttccttagaagacttgggcatcaaactctcagcaacatcagctggagttatattagtttcccctaataaacgatgaatctcaggaaagtaatcatcatgagacgtaacgtctagataattattagcaagcaccttgaaggactcaaaacaacagtatgatagctcaatgtgtctcgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="49364" stop="48078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49064" g_stop="48375" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-U571250" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49064" e_stop="48375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAATTGACATATATCACCAAGTTACTAAGATGTAAATATTTTGTTACACAAAAAGATAAGATACTACACTATGTATTATGCAACAACCACTTCCTACATCATCATAGTATCTCTTGAATAACAAAATCAACAATGTTCAACAACAAAATTATTCAAAATATCTGAATCCTGGTTCTATGGGCAACACCTAATTGATCAAATATTTCCATGATCAAACTTTACTAACCCTTTACTAACATCATCATTAGTCCATTACTATCTCAGACTTGCAATTTTCCTTAGCACCATCACTTTCTGGCTTTTCCTTAGTCTCCATCGACGTCCCATTTTCGTTCACATCATCAGCCCTTTTCGCGTCTTCTGCAGCAGCTGCTGCTTCTTTCTTTTTCTTTTCGTTCTCGTTCTCTTCCTTCTCCTTCTCTGCCTTTTCTTCCTCAGCCTTCAATTTTGCTTCCACCTTTGCTGTTTCAATAGCTTTAACTAACCTCTCCAAGCAAGTATCTGCATTTTCCTTAGAAGACTTGGGCATCAAACTCTCAGCAACATCAGCTGGAGTTATATTAGTTTCCCCTAATAAACGATGAATCTCAGGAAAGTAATCATCATGAGACGTAACGTCTAGATAATTATTAGCAAGCACCTTGAAGGACTCAAAACAACAGTATGATAGCTCAATGTGT-TTGTCCA</genome_strand>
        <mrna_strand>AGGAAATTGATATATATCACCAAGTTACTAAGATGTAAATATTTGTTACCACAAAAAGATAAGATACTACACTATGTATTATGCAACAACCACTTCCTACATCATCATAGTATCTCTTGAATAACAAAATCAACAATGTTCAACAACAAAATTATTCAAAATATCTGAATCCTGGTTCTATGGGCAACACCTAATTGATCAAATATTTCCATGATCAAACTTTACTAACCCTTTACTAACATCATCATTAGTCCATTACTATCTCAGACTTGCAATTTTCCTTAGCACCATCACTTTCTGGCTTTTCCTTAGTCTCCATCGACGTCCCATTTTCGTTCACATCATCAGCCCTTTTCGCGTCTTCTGCAGCAGCTGCTGCTTCTTTCTTTTTCTTTTCGTTCTCGTTCTCTTCCTTCTCCTTCTCTGCCTTTTCTTCCTCAGCCTTCAATTTTGCTTCCACCTTTGCTGTTTCAATAGCTTTAACTAACCTCTCCAAGCAAGTATCTGCATTTTCCTTAGAAGACTTGGGCATCAAACTCTCAGCAACATCAGCTGGAGTTATATTAGTTTCCCCTAATAAACGATGAATCTCAGGAAAGTAATCATCATGAGACGTAACGTCTAGATAATTATTAGCAAGCACCTTGAAGGACTCAAAACAACAGTATGATAGCTCAATGTGTCTCGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599411" ref_strand="+" ref_description="SGN-U599411 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ttatctttatttcattacgaatctcagatgtattggtctggtaaacaggtcgctctcccagtgaaccggaactggagaaattagttcaagaagtggagaagtatactcttgccagtcatcttttttggggtctatggggaataatatcggtacttctcctgaccttatatattctgtcatgataagagtagttatgagctgcgtacacaaaaagaacagtgaatagtctaagtaggaacttggaactacctagtctttaactgtagaaaactttatattgaaagtccgtcaacaattaatagatacatggtttgccgcattttgtgcccaagccataacagatttggctctttttctaccttttttgccttcgacaacaatgttgttattgagctgcataggcctttcttaacatccttcatttcctcccctttttcagcatcatgtcaataagatagacttcgattacttggggtatgctaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="54261" stop="55345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54561" g_stop="55045" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-U599411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54561" e_stop="55045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTTTATTTCATTACGAATCTCAGATGTATTGGTCTGGTAAACAGGTCGCTCTCCCAGTGAACCGGAACTGGAGAAATTAGTTCAAGAAGTGGAGAAGTATACTCTTGCCAGTCATCTTTTTTGGGGTCTATGGGGAATAATATCGGTACTTCTCCTGACCTTATATATTCTGTCATGATAAGAGTAGTTATGAGCTGCGTACACAAAAAGAACAGTGAATAGTCTAAGTAGGAACTTGGAACTACCTAGTCTTTAACTGTAGAAAACTTTATATTGAAAGTCCGTCAACAATTAATAGATACATGGTTTGCCGCATTTTGTGCCCAAGCCATAACAGATTTGGCTCTTTTTCTACCTTTTTTGCCTTCGACAACAATGTTGTTATTGAGCTGCATAGGCCTTTCTTAACATCCTTCATTTCCTCCCCTTTTTCAGCATCATGTCAATAAGATAGACTTCGATTACTTGGGGTATGCTAGGC</genome_strand>
        <mrna_strand>TTATCTTTATTTCATTACGAATCTCAGATGTATTGGTCTGGTAAACAGGTCGCTCTCCCAGTGAACCGGAACTGGAGAAATTAGTTCAAGAAGTGGAGAAGTATACTCTTGCCAGTCATCTTTTTTGGGGTCTATGGGGAATAATATCGGTACTTCTCCTGACCTTATATATTCTGTCATGATAAGAGTAGTTATGAGCTGCGTACACAAAAAGAACAGTGAATAGTCTAAGTAGGAACTTGGAACTACCTAGTCTTTAACTGTAGAAAACTTTATATTGAAAGTCCGTCAACAATTAATAGATACATGGTTTGCCGCATTTTGTGCCCAAGCCATAACAGATTTGGCTCTTTTTCTACCTTTTTTGCCTTCGACAACAATGTTGTTATTGAGCTGCATAGGCCTTTCTTAACATCCTTCATTTCCTCCCCTTTTTCAGCATCATGTCAATAAGATAGACTTCGATTACTTGGGGTATGCTAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599070" ref_strand="+" ref_description="SGN-U599070 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354195|emb|CAO46776.1| (e_value=2e-37) unnamed; (*ATH) AT1G30810.1 (e_value=9e-39)  Symbol: None | transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein, contains similarity to Swiss-Prot:P29375 retinoblastoma-binding protein 2 (RBBP-2) (Homo sapiens); contains Pfam domains PF02375: jmjN domain... ; ">
      <seq>gaagcagtgcagctcatgctctgatgatgcaaccacctcgtatgcttcgaatcacagtagtggcaagaagttatttggggttgatctttccaggggttctcctagtgttcaacaaaacggaacatttgactcagaaatagatcccctgagcaccaaggtttcagaacgaacgcttttgtaccatgttgaccctctaaagttagggtcaatcgcctcaggaaagctttggtgcagtaagcaggcaatattccccataggatttagaagtcgtgttaagttcttcgatgccagcagtcctgagataactagtagctatatatgcgagatcctgaatggtgggctcattggacctctattcaaggttagcttagaagagtgtccagatacgaacttagtgagttcatcagcgcagaaatgctgggaaatgatctcgcatagagtctttgaagaactagcaacgaagttaaatccaggaaggcaagatttgccaccattgcaacctgacacagaatgcatcaacggtctcggaatgtttgggttactctccccaccgatagttcagtccattgaagctcttgatacaaactatcaatgtctggagtactggaaaaacaagctaaaactcaaggacgagtgtgtaactgtcaaagggccttcaggttcatcggagagtactgttgacatggcaagatctgctgtgatggaaagaggtcagtgttcgggaaccaaggtggctactgaggaggaacatgcttactatagttcatctaacaccgagctacaattagtacttagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="59147" stop="56776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58847" g_stop="58591" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58590" i_stop="58485" i_length="106">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58484" g_stop="58381" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="361" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58380" i_stop="57888" i_length="493">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57887" g_stop="57687" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="562" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57686" i_stop="57310" i_length="377">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.749" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57309" g_stop="57076" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="796" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-U599070" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58847" e_stop="58591"/>
          <exon e_start="58484" e_stop="58381"/>
          <exon e_start="57887" e_stop="57687"/>
          <exon e_start="57309" e_stop="57076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAGTGCAGCTCATGCTCTGATGATGCAACCACCTCGTATGCTTCGAATCACAGTAGTGGCAAGAAGTTATTTGGGGTTGATCTTTCCAGGGGTTCTCCTAGTGTTCAACAAAACGGAACATTTGACTCAGAAATAGATCCCCTGAGCACCAAGGTTTCAGAACGAACGCTTTTGTACCATGTTGACCCTCTAAAGTTAGGGTCAATCGCCTCAGGAAAGCTTTGGTGCAGTAAGCAGGCAATATTCCCCATAGGTTTGTTGAATATACTTTTCATACTAAGAAATTTTCATTTGATGCAACATTTTATTCAAATTGCAATGGTCTCACTGTATATTTCAATGTTGATGCTCTTTAACAGGATTTAGAAGTCGTGTTAAGTTCTTCGATGCCAGCAGTCCTGAGATAACTAGTAGCTATATATGCGAGATCCTGAATGGTGGGCTCATTGGACCTCTATTCAAGGTAAGATGTTATTCATAACTTTGCCCGATAAAATATGCGAGTTGAGAAAAAAAATGGATAATGAGGATTACTGTTATTTTATGCTAGTACTTGGAAGAAAAATATGTGAGTTATTCTCATTATTTTTGCATAGGGGTTTGTGTAAGGAAAAATTCATATTATTTTGTGTGCAGAGGAGGTACATTTACTTTATTTGTCGCAGCTAAGAATCTAGCACTTGATCTCCAAAACTTAGTCCACCACTAACCCTTTCTAAGTCTTCTCGTTAATAATTTTTCATGTTTATGAGCTCATACAAAAGAACCTTTAGGCCTGTTATGCACGAACTATTTGCAATTGTGCTGCTTTTAAATTTTATTATTGTGGCTGTCGCCTTGCCTTCTGCCTTTTAATTTTCGTTAGTGGCCTTGCAAATGACGATTGTCTACTTGATTCTAGTTTCTATGAATTTGCTGGATGCTAATTATTGTCTACTTGGAGTTTCTGATTTCAGGTTAGCTTAGAAGAGTGTCCAGATACGAACTTAGTGAGTTCATCAGCGCAGAAATGCTGGGAAATGATCTCGCATAGAGTCTTTGAAGAACTAGCAACGAAGTTAAATCCAGGAAGGCAAGATTTGCCACCATTGCAACCTGACACAGAATGCATCAACGGTCTCGGAATGTTTGGGTTACTCTCCCCACCGATAGTTCAGGTATACCTATATTATGTTGCTGTGTGCATGATTTTGCTCTTTCAAGTTTGTGATTTACTGGCTTTAGTTTGACCAACGAATAATCTGACCTGCGATTTTGGATTAATGCGACATTTCCAGAAAAAATGGATCCCACTAAGGACAATAGGTTTCTATCTTGTGATCTTGTAATTGGTTTATTAGCGGAATCACCTTATTGTCATCAACTTAAGTTTTACATTCTTACGCACATTTCTTATTTGAAACCTAGGATCCATTCTTCGTTGTTGAGAAGACTCTCTTCTTATGCAGCTTTCTTATTTCTGACTCTTTCAATAAGTAAAACACTTCCTTCCAAGTGAATTATTCTTACATTGTGCTAACTCTGGTGTATACAGTCCATTGAAGCTCTTGATACAAACTATCAATGTCTGGAGTACTGGAAAAACAAGCTAAAACTCAAGGACGAGTGTGTAACTGTCAAAGGGCCTTCAGGTTCATCGGAGAGTACTGTTGACATGGCAAGATCTGCTGTGATGGAAAGAGGTCAGTGTTCGGGAACCAAGGTGGCTACTGAGGAGGAACATGCTAACTATAGTTCATCTAACACCGAGTTACAATTAGTACTTAGG</genome_strand>
        <mrna_strand>GAAGCAGTGCAGCTCATGCTCTGATGATGCAACCACCTCGTATGCTTCGAATCACAGTAGTGGCAAGAAGTTATTTGGGGTTGATCTTTCCAGGGGTTCTCCTAGTGTTCAACAAAACGGAACATTTGACTCAGAAATAGATCCCCTGAGCACCAAGGTTTCAGAACGAACGCTTTTGTACCATGTTGACCCTCTAAAGTTAGGGTCAATCGCCTCAGGAAAGCTTTGGTGCAGTAAGCAGGCAATATTCCCCATAG..........................................................................................................GATTTAGAAGTCGTGTTAAGTTCTTCGATGCCAGCAGTCCTGAGATAACTAGTAGCTATATATGCGAGATCCTGAATGGTGGGCTCATTGGACCTCTATTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTAGAAGAGTGTCCAGATACGAACTTAGTGAGTTCATCAGCGCAGAAATGCTGGGAAATGATCTCGCATAGAGTCTTTGAAGAACTAGCAACGAAGTTAAATCCAGGAAGGCAAGATTTGCCACCATTGCAACCTGACACAGAATGCATCAACGGTCTCGGAATGTTTGGGTTACTCTCCCCACCGATAGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................TCCATTGAAGCTCTTGATACAAACTATCAATGTCTGGAGTACTGGAAAAACAAGCTAAAACTCAAGGACGAGTGTGTAACTGTCAAAGGGCCTTCAGGTTCATCGGAGAGTACTGTTGACATGGCAAGATCTGCTGTGATGGAAAGAGGTCAGTGTTCGGGAACCAAGGTGGCTACTGAGGAGGAACATGCTTACTATAGTTCATCTAACACCGAGCTACAATTAGTACTTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568731" ref_strand="+" ref_description="SGN-U568731 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|157354198|emb|CAO46779.1| (e_value=9e-58) unnamed; (*ATH) AT4G20380.7 (e_value=2e-51) |; ">
      <seq>gcaatatttaacaagaagaaaaaaggagatgtaagaaaaatatccaaaaaccaatcttttgaaatcttgaatttacccaatttctgtcggaattttcgctcagatttccatttgaattccaacccattttcagataatctcaagtacccttcactgtatttttttttttcgtgtgtggggatatatatatatatatatatattataatagaggggtaccctatcttccagatttgttcattgactggaagaataaatttacctcacagatcggcagaaattagctcttctacctcagacgactcgatattcaaacagattgaaagatatgcagagtcagttgatgtgcagtgggtgcaggacaatgcttctttatcccagaggagcttctaatgtctgctgtgcagtgtgcaatgcactcacccctgtcccaccacctggaatggaaatggctcaattgatatgtggaggctgtcgtacattacttatgcatccacgtggagcgaacagtgtgagatgctcctgctgtcatacggtgaaccttgtcccaggtccaaaccagtttgctcatgtctactgcgggaactgccgtatgatgctgatgtatccatgtggagctccatcggttaaatgtgcagtatgccattatattaccaatgttaatgcaggagatggaagagcccatgcacctttgaaccctcctaacggcactgctactactgcttcaggatcctcttcaactgccaaggctcgttcacaaaatcaaactgttgtcgtccaaaacccaatgtctgtcgatgagagtggcaagttggtgagtaatgtagttgttggtgtaacaacaacatcatagctcgtctgctaaacttgctgttcgtggacaacaattgagagttttgctcgcaacaattggaaagaggagaataaagacagccgctgcatataaatatggtagtgtttagtgttaatactacaaccatacccctgtttttcttttgttaacattttgatattatgattgtggggtgattgaagctactactacaagtgttgtgactatttggagtctgtaattgataactacgcgttagatttgtggcgtgctatgcccaaagtcataagtgaagaatgttattatgtaccttatatgccatattattgtatatgactgtataccgtgaaccttactgcctaaacaccttgcttttgagaggcgaattcaggatctagagactagagttagtgagctttgaatgagtgcggtttttattagatgtatgcatcttttccccttgtgcatgtgtgtaatggcacctgcagacttgtctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="78544" stop="72487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78245" g_stop="78009" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78008" i_stop="77299" i_length="710">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77298" g_stop="77220" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="325" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77219" i_stop="77057" i_length="163">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77056" g_stop="76943" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="439" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76942" i_stop="76575" i_length="368">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76574" g_stop="76464" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="550" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75083" g_stop="74971" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="663" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318">
            <donor d_prob="0.402" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73652" g_stop="73575" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="741" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73481" g_stop="73410" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="813" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="73303" g_stop="72787" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="814" r_stop="1331" r_length="518" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-U568731" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>1321</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78245" e_stop="78009"/>
          <exon e_start="77298" e_stop="77220"/>
          <exon e_start="77056" e_stop="76943"/>
          <exon e_start="76574" e_stop="76464"/>
          <exon e_start="75083" e_stop="74971"/>
          <exon e_start="73652" e_stop="73575"/>
          <exon e_start="73481" e_stop="73410"/>
          <exon e_start="73303" e_stop="72787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATATTTTTTTTT--T-T-T--CG---TGTGTGGGGATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTGGTAAGAAGATTGCTTTTTTTTTCTTTATCCAATTTCTTGGGGGGTTTTCCCTTTTAATTTGGTAGGCTAAACATGATATTTTTTTTACTTTTCAATCATGTTTGTGATGGGTGTAATTGATTGTGGATAAATTTTGGTTGGTGGGTAGGAAGAATTTGGGGCAAGGGCTCTCGTTTTGGTTAGCTCTAGAAATTACCTAGCTTTTTCTTCCTCTGCTGAGATTTGAACCTGGTTGATGAGCCACACTCATGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAGGTGAAACCTTTTTGTCTCAACAGAGATTGTTAAGACGAAGTTCATTGTTTCATGATGGACTTTTAGATTTATTACAATCTTGAGAACTGTAACTCAAAGATCATTTTGCAATTTAGTTTGTGAGCTTGCCATTACTATTTGGTTAATGTTTTTTGTTCGACAGATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTGGTATCTGTGCTTTTCTTGATTCTGATGTGGTTATAAGTACTTTTTTTTTTCTTTCAAATTTGTGTGGCTGATTTTTGGATTATGGCCCCCTTCCATGTTGATTACAAGTGTTGTTGCTAGAAGATTGTTGTTAGGAAAGAAAATTAGTGCACTTAAAAACATTTTGAGTATCTAATAGTAACGCTATGCTTGATGCTGACATGGTAAATAAAGCCATAAAGTGGGCTAGGTTTGGGGAGGCTTGGTGTATAGATCTGTTTGGATTGAGATGTAGTATTGTTTGTTGTTTTGCCTTGACATGGATTGAAGCGTAGTTGTTATTGTGTTCTGTTACTCGAAGGTGTTGCTTAAATTTTGATCTTTCTCAGGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAGGTACAGTTTATAACATCCCTTCCCTTGATTTCGGAGACTAATGTTTGTCTGGTTATGAAAATCTAGTGTCTCTTTGCTGGAATGAAATGTTTCCTTCATTTGAACAGAATATGAATCTAACTTTTGATATTATCCACTTAAGCTTGACCTTCGGTTGTTTTCATTTATCATATGAGATCTTTTTCCTACATATTCATCAAAAGTTTATCATATGAGATCTCAAATTGAGATACCAGCATTTTTATTCTTGTATTACATCAGAAAAATCTGTTGGAAGAGTAACATTACTTTGATGATCTAACTATGTAATACATAAGTGAACATTTCGGTATGGTTGTGTTTTTAGTTGAACTATGTTATGACTTATGAGTTTAGAGTGTGGTCCCAGCTGAAATTCACAACTTTCGAGCACTTCAAGCTTTTGCCTGGGGGAAGGGAGCTGTATAAATTTATGTCTTTGTCAGACTTGGTGGAATATGGTTATGGGATCACCAAAAAGCTTCATTATTGTATGTTTGTGTTATGTTTTTTCCTATTGATGCTCAATTTATCAGAAGTTTTGCCTGACAGATAGGTGTAAGTCCAATTGATTTCTCTTGAGTGTGGTTATTCCTCGAAAATAATAACCTGATCTGGTGCTCTTTGTAAACTAGTAGCCAGTCACATAAGATATAGATATCTGCTGTTTAATCTTCTTATCAGCTTTACTTTTTGGTCATATCTGCTTCATTTTGCAGCACATCTGTAATTTGCAAACAGAACTTAGTTATGACTGGTAATTGGTGGATTTAACTTGGTGTATACATTTTTCTCCAAGCACATGTTCTTAAATGTCATTGACTAGTCTGTTCCTATGTGTCTTTTTTGGTTTTAAGAAGATATTACTGGAATCTATGCATGAGTAACCAGAGTGGGTGTATATTGAATTGTTCTCTTTCCTTTCCAATCTCAAAAGTTTTCTTTCCCCCTAGGTCTTCTATCTTGTTTATAGTGCTGGGAATATATTTTTTCATTCTTCCCTTGGTCAGAAGCTACATTATTTGAAGTTGGATGGTGGTCCTGAAGGCAACAACATTTGTAGGTTGACCATTCCAAGAAGTAAGAAATGTAGTGTCACAATGCTGATTGGGCACTAATGTTATGTGCAAAATCAGGTGCCTTTTACTAGAGCTAAGCGGTAAAGACAGATGTTTAAGATGAGATAGTAACTCATTGAATTTTAAGGGGACTATACCTGAATCATTTGCATGTTCTATCTTTCACTAGAATTTAATAGGGTAAAGAGCTACATGAATTGTTTGTGTTTGAGGATTTGTACATTCGATAGAGCTTAGGTTTCTTGTTACCTGGATGACATATAATTGTGCTGTCGATCTTCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAATGTGAGTATGATGATTCATTTTTCTTTTTGATCTTTGGTAAAAATTTTAGCTGATGCTTGGTCCATATAGTTAAAGAAGTAAAATAACAAAGAGGAATGAATTTTAAGATTGTGCTTTTGGTAATGAGAATTCTATTTTGTGCGTAATATAATATTTACTTACTTTGTTAGGATCAGAGAATAGCCAACTACCATATTGTCTTAGTTTAATTACAATTTAAAGTGAGAATATATATCAACTTGACTGTAAATAAGTGATAAAATGAGTGTATGAAAGACTTGTCTTGCATGCATTGGTTGGTGTAAACACCAGTGCGGGTAAGTTTTTTTATTTTGTTGCTCAAGGGTGATGCAAATCAATCAAAATGACAATGTTGAGCCTTTTATGTAAATAGTAAGATTTATGATATTAGAATGATCGGAATTGAAGAAGATAAGAAGGGAATAATTAGCACAGTGAACATGTTGTTGTTGATGCTTCAAAATAGCCAATTCCCGAGTCATTGTTACTCATGGAGAATTGTTGGGTTTGTCTCTGTTTAAGCTGCTCTTCTCTGGTTCTTCCTTCTCCACTTAATAGTCTGAACCTATAGGAATCAGTAGATTATAGCGATTAGCCTTGCTTCATATCATGGATTGTAAAGCAAGTAAATTAAATTGAAAATCGTCAGCACATTTCGAGGACTTTCACATAAAGCAAAGTGTTAAGAGTGGTTTAATCCTTATGAAAGTTTAACGGAGAAGGCTTATGTTGGAAGGTAAGTTTATCTTGAGCTTTTGATATCAGCATCATCAGCCCACTTAAATACAAACTTATTTTGAACTTTTAGTTGCAAATTTTAGAAGTTATTGATATCACAGATTGTGGAAAAAGAAGGGGTAAGTGGGTGAGTGAGGAAGCAAAATAAGGTCTTTTGGTTACTAGTCCATTGCTTATGTTATTTGCGTATGTATCGGAATACAACAAGAATATGCTCAGTGTAATCCCATAAGTGGAATCTGGTTAGTGTATACACAGCCTTACCCTTACATTCCGAAGGTAGAGAAGTTGTTTTTGATAGACCTTGACTCAAGTAAAGCATATCGAAATCAGTAAGAAAAGGAAATGCAGTAGTGAAGAAGCCATGTAGAAAATAATGGAGAAAAGAAACAAATAATATGATAACTAAAAGAAGGAAACAACAGGTACTAGTAGAATTGAAGAATAAGATAGTAGGAGAGTAATAATAATAATATTGATAAGAGAGACTAGACAACATGCGTACATGAATATGATAAGGAATTTCAGTTTTCATGTGTTTATATGTATTTTTTTGCAGGCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACTGTGAGTTCATAAGTCTGCCGCATGTTCTTTTCTTACTTACTAGGTTCTAAATTGACTAAATTGATTTCTGAAATATGTTCATATCTGCTTTAGGCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTGGTAAGTTTGTTTCCAACATGATTAACCTCCTTTCATTTATATCTTTTGGCTTCTTCACTCTCAAGTTATCCACCTTATCATTAACGATACCATTTTACATTTCTAGGTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTATGCCCAAAGTCATAAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACTGTATACCGTGAACCTTACTGCCTAAACACCTTGCTTTTGAGAGGCGAATTCAGGATCTAGAGACTAGAGTTAGTGAGCTTTGAATGAGTGCGGTTTTTATTAGATGTATGCATCTTTT-CCCTTGTGCATGTGTGTAATGGCACCTGCAGACTTGTCTGGAA</genome_strand>
        <mrna_strand>GCAATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATTTTTTTTTTTCGTGTGTGGGGATATATATATATATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAG...................................................................................................................................................................ATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG................................................................................................................................................................................................................................................................................................................................................................................GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACT.............................................................................................GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG..........................................................................................................GTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACAAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTATGCCCAAAGTCATAAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACTGTATACCGTGAACCTTACTGCCTAAACACCTTGCTTTTGAGAGGCGAATTCAGGATCTAGAGACTAGAGTTAGTGAGCTTTGAATGAGTGCGGTTTTTATTAGATGTATGCATCTTTTCCCCTTGTGCATGTGTGTAATGGCACCTGCAGACTTGTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594740" ref_strand="+" ref_description="SGN-U594740 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354198|emb|CAO46779.1| (e_value=2e-33) unnamed; (*ATH) AT1G32540.2 (e_value=5e-33) | Symbol: None | zinc finger protein, putative, similar to zinc-finger protein Lsd1 (Arabidopsis thaliana) gi:1872521:gb:AAC49660 | chr1:11767776-11769860 FORWARD | Aliases: None; ">
      <seq>aggaagaaaaaaggagatgtaagaaaaatatccaaaaaccaatcttttgaaatcttgaatttacccaatttctgtcggaattttcgctcagatttccatttgaattccaacccattttcagataatctcaagtacccttcactgtatattttttttttttcggggggggggatatatatattataatagaggggtaccctatcttccaaatttgttcattgactggaaaaataaatttacctcacagatcggcagaaattagctcttctacctcaaacgactcgatattcaaacagattgaaagatatgcaaagtcagttgatgtgcagtgggtgcaggacaatgcttctttatcccaaaggagcttctaatgtctgctgtgcagtgtgcaatgcactcacccctgtcccaccacctggaatggaaatggctcaattgatatgtggaggctgtcgtacattacttatgcatccacgtggagcgaacagtgtgaaatgctcctgctgtcatacggtgaaccttgtcccaggtccaaaccagtttgctcatgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="78533" stop="74759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78233" g_stop="78009" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78008" i_stop="77299" i_length="710">
            <donor d_prob="0.664" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77298" g_stop="77220" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="304" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77219" i_stop="77057" i_length="163">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77056" g_stop="76943" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="418" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76942" i_stop="76575" i_length="368">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76574" g_stop="76464" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="529" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75083" g_stop="75059" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="554" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-U594740" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78233" e_stop="78009"/>
          <exon e_start="77298" e_stop="77220"/>
          <exon e_start="77056" e_stop="76943"/>
          <exon e_start="76574" e_stop="76464"/>
          <exon e_start="75083" e_stop="75059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATATTTTTTTTTTTTCGTGTGTGGGGATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTGGTAAGAAGATTGCTTTTTTTTTCTTTATCCAATTTCTTGGGGGGTTTTCCCTTTTAATTTGGTAGGCTAAACATGATATTTTTTTTACTTTTCAATCATGTTTGTGATGGGTGTAATTGATTGTGGATAAATTTTGGTTGGTGGGTAGGAAGAATTTGGGGCAAGGGCTCTCGTTTTGGTTAGCTCTAGAAATTACCTAGCTTTTTCTTCCTCTGCTGAGATTTGAACCTGGTTGATGAGCCACACTCATGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAGGTGAAACCTTTTTGTCTCAACAGAGATTGTTAAGACGAAGTTCATTGTTTCATGATGGACTTTTAGATTTATTACAATCTTGAGAACTGTAACTCAAAGATCATTTTGCAATTTAGTTTGTGAGCTTGCCATTACTATTTGGTTAATGTTTTTTGTTCGACAGATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTGGTATCTGTGCTTTTCTTGATTCTGATGTGGTTATAAGTACTTTTTTTTTTCTTTCAAATTTGTGTGGCTGATTTTTGGATTATGGCCCCCTTCCATGTTGATTACAAGTGTTGTTGCTAGAAGATTGTTGTTAGGAAAGAAAATTAGTGCACTTAAAAACATTTTGAGTATCTAATAGTAACGCTATGCTTGATGCTGACATGGTAAATAAAGCCATAAAGTGGGCTAGGTTTGGGGAGGCTTGGTGTATAGATCTGTTTGGATTGAGATGTAGTATTGTTTGTTGTTTTGCCTTGACATGGATTGAAGCGTAGTTGTTATTGTGTTCTGTTACTCGAAGGTGTTGCTTAAATTTTGATCTTTCTCAGGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAGGTACAGTTTATAACATCCCTTCCCTTGATTTCGGAGACTAATGTTTGTCTGGTTATGAAAATCTAGTGTCTCTTTGCTGGAATGAAATGTTTCCTTCATTTGAACAGAATATGAATCTAACTTTTGATATTATCCACTTAAGCTTGACCTTCGGTTGTTTTCATTTATCATATGAGATCTTTTTCCTACATATTCATCAAAAGTTTATCATATGAGATCTCAAATTGAGATACCAGCATTTTTATTCTTGTATTACATCAGAAAAATCTGTTGGAAGAGTAACATTACTTTGATGATCTAACTATGTAATACATAAGTGAACATTTCGGTATGGTTGTGTTTTTAGTTGAACTATGTTATGACTTATGAGTTTAGAGTGTGGTCCCAGCTGAAATTCACAACTTTCGAGCACTTCAAGCTTTTGCCTGGGGGAAGGGAGCTGTATAAATTTATGTCTTTGTCAGACTTGGTGGAATATGGTTATGGGATCACCAAAAAGCTTCATTATTGTATGTTTGTGTTATGTTTTTTCCTATTGATGCTCAATTTATCAGAAGTTTTGCCTGACAGATAGGTGTAAGTCCAATTGATTTCTCTTGAGTGTGGTTATTCCTCGAAAATAATAACCTGATCTGGTGCTCTTTGTAAACTAGTAGCCAGTCACATAAGATATAGATATCTGCTGTTTAATCTTCTTATCAGCTTTACTTTTTGGTCATATCTGCTTCATTTTGCAGCACATCTGTAATTTGCAAACAGAACTTAGTTATGACTGGTAATTGGTGGATTTAACTTGGTGTATACATTTTTCTCCAAGCACATGTTCTTAAATGTCATTGACTAGTCTGTTCCTATGTGTCTTTTTTGGTTTTAAGAAGATATTACTGGAATCTATGCATGAGTAACCAGAGTGGGTGTATATTGAATTGTTCTCTTTCCTTTCCAATCTCAAAAGTTTTCTTTCCCCCTAGGTCTTCTATCTTGTTTATAGTGCTGGGAATATATTTTTTCATTCTTCCCTTGGTCAGAAGCTACATTATTTGAAGTTGGATGGTGGTCCTGAAGGCAACAACATTTGTAGGTTGACCATTCCAAGAAGTAAGAAATGTAGTGTCACAATGCTGATTGGGCACTAATGTTATGTGCAAAATCAGGTGCCTTTTACTAGAGCTAAGCGGTAAAGACAGATGTTTAAGATGAGATAGTAACTCATTGAATTTTAAGGGGACTATACCTGAATCATTTGCATGTTCTATCTTTCACTAGAATTTAATAGGGTAAAGAGCTACATGAATTGTTTGTGTTTGAGGATTTGTACATTCGATAGAGCTTAGGTTTCTTGTTACCTGGATGACATATAATTGTGCTGTCGATCTTCAGGTCCAAACCAGTTTGCTCATGTCTA</genome_strand>
        <mrna_strand>AGGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATATTTTTTTTTTTTCGGGGGGGGGGATATATATATTATAATAGAGGGGTACCCTATCTTCCAAATTTGTTCATTGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAAACGACTCGATATTCAAACAGATTGAAAG...................................................................................................................................................................ATATGCAAAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAAAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG................................................................................................................................................................................................................................................................................................................................................................................GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAAATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACCAGTTTGCTCATGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586141" ref_strand="+" ref_description="SGN-U586141 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157351630|emb|CAO42589.1| (e_value=2e-59) unnamed; (*ATH) AT2G34790.1 (e_value=5e-55)  Symbol: None | FAD-binding domain-containing protein, similar to SP:P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica); contains PF01565 FAD binding domain | chr... ; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=3e-35) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830; ">
      <seq>tgatggcataaggtctagaaaattttgaatacaaggcctctcatttacacaagaaaggcttatggcttcttcaatctctatgaatattcttttttcattcatattactattttcagcttcatgtgttgtttcatatacaattcaagatcaattctaccaatgtattacactctattcggatcgttcgatccctttctccacagctttcttcactcctacttccaatgctacttcattcaactctgtccttaaatccactgcccaaaatctaaggtgtttatcaccttctcaacaaaaacctctgcttattttcactgctttgattgaatctcatgttcaagcagcagttatttgcgcgaaagagctaaaagttcagctcagagttaggagtggaggtcatgattatgaaggcatatcttatacatcagaaatgaaaagatcagtgccttttatcatgcttgacttagctaagcttcgtgcgattaaagtggacattgaggacaacagtgcatgggttcaagctggtgcgacgattggtgaagtgtactataggattgcagaaaaaagcaagacacatggttaccctgctggcctatgtaccagcttaggaattggtggtcatattactggaggagcttatggtcctatgatgaggaaatatggtcttggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="91253" stop="92522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91551" g_stop="92222" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-U586141" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91551" e_stop="92222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGGCATAAGGTCTAGAAAATTTTGAATACAAGGCCTCTCATTTACACAAGAAAGGCTTATGGCTTCTTCAATCTCTATGAATATTCTTTTTTCATTCATATTACTATTTTCAGCTTCATGTGTTGTTTCATATACAATTCAAGATCAATTCTACCAATGTATTACACTCTATTCGGATCGTTCGATCCCTTTCTCCACAGCTTTCTTCACTCCTACTTCCAATGCTACTTCATTCAACTCTGTCCTTAAATCCACTGCCCAAAATCTAAGGTGTTTATCACCTTCTCAACAAAAACCTCTGCTTATTTTCACTGCTTTGATTGAATCTCATGTTCAAGCAGCAGTTATTTGCGCGAAAGAGCTAAAAGTTCAGCTCAGAGTTAGGAGTGGAGGTCATGATTATGAAGGCATATCTTATACATCAGAAATGAAAAGATCAGTGCCTTTTATCATGCTTGACTTAGCTAAGCTTCGTGCGATTAAAGTGGACATTGAGGACAACAGTGCATGGGTTCAAGCTGGTGCGACGATTGGTGAAGTGTACTATAGGATTGCAGAAAAAAGCAAGACACATGGTTACCCTGCTGGCCTATGTACCAGCTTAGGAATTGGTGGTCATATTACTGGAGGAGCTTATGGTCCTATGATGAGGAAATATGGTCTTGGAGC</genome_strand>
        <mrna_strand>TGATGGCATAAGGTCTAGAAAATTTTGAATACAAGGCCTCTCATTTACACAAGAAAGGCTTATGGCTTCTTCAATCTCTATGAATATTCTTTTTTCATTCATATTACTATTTTCAGCTTCATGTGTTGTTTCATATACAATTCAAGATCAATTCTACCAATGTATTACACTCTATTCGGATCGTTCGATCCCTTTCTCCACAGCTTTCTTCACTCCTACTTCCAATGCTACTTCATTCAACTCTGTCCTTAAATCCACTGCCCAAAATCTAAGGTGTTTATCACCTTCTCAACAAAAACCTCTGCTTATTTTCACTGCTTTGATTGAATCTCATGTTCAAGCAGCAGTTATTTGCGCGAAAGAGCTAAAAGTTCAGCTCAGAGTTAGGAGTGGAGGTCATGATTATGAAGGCATATCTTATACATCAGAAATGAAAAGATCAGTGCCTTTTATCATGCTTGACTTAGCTAAGCTTCGTGCGATTAAAGTGGACATTGAGGACAACAGTGCATGGGTTCAAGCTGGTGCGACGATTGGTGAAGTGTACTATAGGATTGCAGAAAAAAGCAAGACACATGGTTACCCTGCTGGCCTATGTACCAGCTTAGGAATTGGTGGTCATATTACTGGAGGAGCTTATGGTCCTATGATGAGGAAATATGGTCTTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573747" ref_strand="+" ref_description="SGN-U573747 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|217071614|gb|ACJ84167.1| (e_value=8e-83) unknown; (*ATH) AT5G44560.1 (e_value=5e-81) | Symbol: None | SNF7 family protein, contains Pfam domain, PF03357: SNF7 family | chr5:17963206-17965627 FORWARD | Aliases: MFC16.25, MFC16_25; (*SWP) sp|Q54DB1|CM2A2_DICDI (e_value=1e-30) Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2; ">
      <seq>tttcttataaaaattccaaaagggaaaaaaccattttggatcacccattttcatgattcagcttttcttcaaaagccattagggtttttgtcctcttccatttcgaagaaaattctagggttcaagaatcattaacaaaagaagatggagaagttgaacagcattttcaagaagaagacttcaccaaaagaagcattgaggaccagcaaaagggaaatggctgttgctaccagaggcattgaacgggagatctcatccttacaaatggaggagaaaaagttagttgcagagatcaagcaaacagccaaaactggaaatgaggccgccaccaaaattctagctcgtcaacttgtgagattgcggcaacaaattgtcaatttgcaaggtagtcgtgctcaaattaggggtgtagcaactcatacacaggcactatatgctagcacctctatgtctactggaatgaaaggtgcaactaaagcgatgtctgccatgaacaagcaaatggcacctgcaaaacaagttaaagtgatcagagaattccagaagcagtcatcacagttggacatgacaattgagatgatgtccgaatccattgatgagactttggataaagatgaagctgaagaagaaactgaggagcttacaaaccaggtgctggacgagattggtgtggacattgcatcacagttatcttcagctccaaaaggccggattgcatcaaagacagttgaaaatgttgcccctcctagttctgatactgctgcagatgtcgaggaacttgagaaaaaggtggcctctcttcgaagaatttgatgaagaacgtggacaacttttatatgatccttgtacaaatttcgcttttagaattaaaaatatagtatgtattatggtaccaatttgtatttctcaactataatcctatagcaccaaacatgacatttatgctgtaagaatgaagtggatcctttttgggttttatgatccttctccatgtaagttttgtatgtagttccttgaattcattgatataccttaccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="98335" stop="93170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98068" g_stop="97871" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97870" i_stop="97780" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97779" g_stop="97735" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="235" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97734" i_stop="96285" i_length="1450">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96284" g_stop="96250" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="270" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96249" i_stop="96070" i_length="180">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96069" g_stop="96019" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="321" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96018" i_stop="95137" i_length="882">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95136" g_stop="95032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="426" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95031" i_stop="94943" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94942" g_stop="94871" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="498" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94870" i_stop="94715" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94714" g_stop="94643" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="570" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="94642" i_stop="94481" i_length="162">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94480" g_stop="94400" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="651" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="94399" i_stop="94316" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="94315" g_stop="94280" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="687" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="94279" i_stop="94182" i_length="98">
            <donor d_prob="0.380" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="94181" g_stop="94120" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="749" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="94119" i_stop="93761" i_length="359">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="93760" g_stop="93470" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="1040" r_length="291" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-U573747" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>1048</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98068" e_stop="97871"/>
          <exon e_start="97779" e_stop="97735"/>
          <exon e_start="96284" e_stop="96250"/>
          <exon e_start="96069" e_stop="96019"/>
          <exon e_start="95136" e_stop="95032"/>
          <exon e_start="94942" e_stop="94871"/>
          <exon e_start="94714" e_stop="94643"/>
          <exon e_start="94480" e_stop="94400"/>
          <exon e_start="94315" e_stop="94280"/>
          <exon e_start="94181" e_stop="94120"/>
          <exon e_start="93760" e_stop="93470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCACAAAAATTCCAAAAAACAAAGGGAAAAAAACCCCATTTTTAATCACCCATTTTCATGATTCAGCTTTTCTTCAAAAGCCATTAGGGTTTTTTTCCTCTTCCATTTC-AAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCAAAAGGTAAGATTTTTGCCCCCTTTTTTTTTTTTTTTTTTAATTTTGTGTTTGGAGTTATGATCTATGGTGAATTTTTTTTGTAATTGATTAACAGAAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAGGTACATGACTCACTAGCTGAGAATTTGATTTAGTTTTGTTTTATGAAAGAGTAGCTTCGCATTATTTGATTTAGAAATAATACTCTGTAAGCTCATTTTGGATCTCAAATGCATAGGCGCTTATGCCCATTGTTCGTGTTATGCATAAACATCTTTCTTTTGGGGATGCTATAATAGTGGTTGTATTCTTTTTAGTTTGATTTTAAATGTACATCGAATGCTATGATCTTTTCCTTGTTAAGCAAGAGATGCTTAATTTGTTTGGACGTCTAGAAATATATGCTCCGGCAAAGAGAGAAAAAGAATCGCTCTTGGTGGAAATTTCGGTCTTCGATATTTGGAATTTGAAATACTATTAGGTATATCAACTAAAGGAAACCCCTCGGAAATATTAGGTTAAGGTTGTTGTGCCTTTGTTCTTCATAGTTTCTACTTTGCAATAAGAATAACAAGGATGAGTGATAGTGAAAAGGTTCCATTTTTATGTGAAAGTTTTTATTGAGGATATACTGGTTGAACGTTCATTAGTAATTAGACAACAAAGTCATGTAATATCGGTGAAGGATTAGGTAGAATAGGTGGATGGCTCCGCTCTATTACCTTCTATTTCAATTCTCTATGGCACTGTTGCTTCATAACAGGATATGATATTAGGAAAAATGGTATAATTAGTTTTTGGGACTAAAAGGTAGTTCAGGTGCATTGTGAAACAATATAACCTGCTTTGCCTGGACAATTCACAGAGTTGGAAGAAGTGCTATGTTGGGTAAAATCTAGAGGTACTTGTTTCCTTTGCAAGTGACTGGCTGTATGAACTCAAGTACTTGAAGGTTTTATTGACTCTTTTGTTTACTTTTGGTGTCATTGTTGGGTCTCCTTCTTAATTTTGATAAAGCTATCAGGGGTCAGCTGTTTGCTAAATGAGGAAACAAATTACATATTCCAGGTTTTATATTTTGAACTATCATCATTTTTACACCATTCTAGTATATTTCACATCATTACCCTTCGGGGTGGCCCAGTGGTTTGAGCTTTTGGACTTCCATGTTGGAGGTCTCTAGTTCGAAACCCCTTGCCAGCGAAAGAAAGGGGTTTGCCTTCTAGGTCAAGCTCCTGGTGCAGGTTACCTCTCCTACGGCTGTGGGCTTCCCTTGTCATAAATTTATTTTATAAAAAATAGTATATTTCACATCATTGTCATTTGCACAAGCAAGCAGTTGGAGAATGCAAAAAGTATTAAACAATTTTGGAAAATCATTGTCCAGAATGTATCATAGTTGGATGTTATTCTTATTTTTTCTTTAGATCATTATCATTTTGATCCACGTTATCTTTTGTGTTGTTATATAATGGGTTTGATTATGATAACTTGCATTGGCTTCCTCGTTTCTTATTTGGTGTTTTTACTTTTCATTAATTCGTCTCCGTTTTTGTTCATGTATAACTTTAGGCATCGAACGGGAGATCTCATCCTTACAAATGGAGGTAAGTTATTAGGAAAATGTTCATAGACATGAGGCAAGTGTGTTTGTTCAGTAAGTTCAGAGTATTCTTGTGAAATTTAAGTCACGAGAACTTCAGAGTATTCTTTCAATAATCATCTTTTCATCTGTGTGAATCTACTTACTTGTGAACTTATATACTTCTTATTTGACTATCTCGTAGGAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACAGGAAACGAGGCAAGTGTTTGCAAATTAATTCTTTTTTCCTGACTACTTTACTTGGAATTGTGATCATTCTAATAGATAATGGCTTCTAGTGGGTGCTTATTTGCATTGGAAACTGCATACTTTTTGCATCCCGATGATTCTTTTGTTTATCAGAATTTGAAATACAGTCTCTTGAGAGATGAGCCATTCTCAGATTGCATAAATCGTTGCCCTTCTGAAGAATTCTTGCATAGTCACAACCTTAGAGAAAGATTATTTGATAGGGAATTATCAGAATTCGAAAGACATCGGAAGAATTAGAGCCAACATAGTTTAACTAATTTTAAATTCTTAATGTTCTGAATTCTCTCACCAACAAACAATTCACAAAATTTATATATGTATTAGTTTATGTATTTACCATTAAATGCTTGTATGAGGGAGGGTGAGCCATGTTAGCTGGAAATGTTTCAAAATAGAGAAAGAGAGGCTGAAACGAGGCAGTTAACTGAGTTGTTGAAAAGAAAGGCAGTGCCCGAAGCACTTGCTATCGAGCAGGCAGGACTGAGTTGAAAAAGGAGCTCTACTTGAAAGGAATGTAGTAACTTGATTTAATGCTCGCTAAGGCTTACAAATATATTGAAGACTCTATTCAGTTGGTCTTTGAAACACTGATTTTACTCGGTGTAATAAGACTCAAGTTTGAATCAAGGCTAATTAAAGGCTTGGATATTCATTGAGAACTTGATTCAGTTAAAGCTTTGGTGGTAAACATGGATAATTATACTTGTGATCCAGGTGAGAAATGAATGGTATTTTTGAAAAAAGGGTGAGTAAAGAACTCATCGCATCTGCTATAAGCCATTTTTTTTCCTCAAAAGTAAATCTTGCTCACATACTTTGACTTATCAGGCAGCCACCAAAATTCTAGCTCGTCAACTTGTGAGGTTACGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAGGTCAACCTTTTCTCCCAATTATTATTGTGTATGAAAAGTAATTGAAATTTTTACTGGATCTTATATGTGTCTTCTTTTCTCTTCTGTAGGCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAGGTACTGATTATTTGTTGTTGTGAGTTTCTTTTCTCTTTTCCTTTTAATCCTTAAAACTTTTGATACTCATCCATTTTGTTTGCGTTTGTGCTACCATTTAATTATTAAGGTGGTAAAGCCCCCCAATTGGTTTATTCTTGTGTTTTTACTTCTCAGCAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACAGTAAGCACTTTCATCCTTCTAAGCGATGCTTCACATTATGGACTTACTTCATGCTATAAGCTCTCTGTACTTGTGGACAAATGCAACGTCTTGAAGGCAAACATTTCAGTTTGATGTGAAGTTCAGCCTAAGCATACTAATGAAGCCATCTGATTTTTCCAGATTGAGATGATGTCTGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAGGTTCAATTGTTACTCATCAGGCTTAGTCAGTTTCCTAATTGTATTTTTCTAGTCATCTATTCTAATTTGTGTTTTCATGTTTAGGTGCTTGACGAGATTGGTGTGGACATTGCATCACAGGTAGATTTCGGATTAAGGATAGTTGAGCGTATAATCAGTTGCTTTCCTCATCTTTAGTTCACGAGCTGTTCATTCATTATTGATTTTTATTTTGGCAGTTATCTTCAGCTCCAAAAGGCCGGATTGCATCGAAGAAAGTTGAAAATGTTGCCCCCCCTAGGTATGTGGAACTGTTTTAAATCACACGCCATACATGGATTTTCTTGTGTAGTTGAGTTGGATTTTTGTGTGTCTACATGTGTCGAGCTACGTTTCTTCTGCATTTCCATATTAAACTGTCACAGTCAATTCTCAACAGTACTTCCTTTCTGTTCTCTGGTTATACTCTCCTTGTGTTTCTGATCATGCGGACTCCTTTGACCTACGGGACTATAAAGTTTGATTGATTCTTGTACTGAACCCAATCTAGAATTCCTCTATAATTGTTATTGGCGTTAATATGGACTCCTAAGAATATCCTTCCTAGTTCTTCTGGGAACATGTTAAGTCTACCTAACAATTCTTCCCATGTGAATGCAGTTCTGATACTGCTGCAGATGTCGAGGAACTTGAGAAGAGGTTGGCCTCTCTTCGAAGAATTTGATGAAGAACGTGGACAACTTTTATATGATCCTTGTACAAATTTCGCTTTTAGAATTAAAAATATAGTATGTATTATGGTACCAATTTGTATTTCTCAACTATAATCCTATAGCACCAAACATGACATTTATGCTGTAAGAATGAAGTGGATCCTTTTTGGGTTTTATGATCCTTCTCCATGTAAGTTTTGTATGTAGTTCCTTGAATTCATTGATATACCTTACCCTC</genome_strand>
        <mrna_strand>TTTCTTATAAAAATTCC--A--A--AAGGGAAAAAA-CC--ATTTTGGATCACCCATTTTCATGATTCAGCTTTTCTTCAAAAGCCATTAGGGTTTTTGTCCTCTTCCATTTCGAAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCAAAAG...........................................................................................AAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAACGGGAGATCTCATCCTTACAAATGGAG....................................................................................................................................................................................GAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACTGGAAATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCACCAAAATTCTAGCTCGTCAACTTGTGAGATTGCGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAG.........................................................................................GCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAG............................................................................................................................................................CAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACA..................................................................................................................................................................ATTGAGATGATGTCCGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAG....................................................................................GTGCTGGACGAGATTGGTGTGGACATTGCATCACAG..................................................................................................TTATCTTCAGCTCCAAAAGGCCGGATTGCATCAAAGACAGTTGAAAATGTTGCCCCTCCTAG.......................................................................................................................................................................................................................................................................................................................................................................TTCTGATACTGCTGCAGATGTCGAGGAACTTGAGAAAAAGGTGGCCTCTCTTCGAAGAATTTGATGAAGAACGTGGACAACTTTTATATGATCCTTGTACAAATTTCGCTTTTAGAATTAAAAATATAGTATGTATTATGGTACCAATTTGTATTTCTCAACTATAATCCTATAGCACCAAACATGACATTTATGCTGTAAGAATGAAGTGGATCCTTTTTGGGTTTTATGATCCTTCTCCATGTAAGTTTTGTATGTAGTTCCTTGAATTCATTGATATACCTTACCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575693" ref_strand="+" ref_description="SGN-U575693 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147787240|emb|CAN60336.1| (e_value=2e-51) hypothetical; (*ATH) AT5G11720.1 (e_value=2e-49) | Symbol: None | alpha-glucosidase 1 (AGLU1), identical to alpha-glucosidase 1 (Arabidopsis thaliana) GI:2323344 | chr5:3776815-3780129 FORWARD | Aliases: T22P22.110, T22P22_110; (*SWP) sp|O04931|AGLU_BETVU (e_value=4e-48) Alpha-glucosidase OS=Beta vulgaris; ">
      <seq>ttgaaaaaaaaataataaatgaaaggaatacaatttccatctttaaacagaaacacctttataatcttctttttgatccatttatcaatattttcaccatattttgccatatccattaaacagaaagaagctcaacagcaagtaattggctatggttactcaatcaaatctgtggctatcactggaaattcaatttttgctaatcttcaactcatcagcacttcttctgtttttggtactgatattcacaatcttatcctcattgccagtttggaaacaaacgatcgtctccgaatacgaataacggacgttaaccaccaacgatgggaagtgccggaagaaattctccgccgtccaccaccgccatcgccgccgtcaacttccaactcctcatcagaaaaccacttcccaattacgctctctaacccaaactcagacctagagttcacccttcacaacaccaccccattcagcttcaccgtccgccggcgattcaccggggatactcttttcgatacttcgccggagaacgaaaaccccgatacattcctcatattcaaagatcagtacatccagatctcctcggcactaccaactaccagagctaacctttacgggctcggagagcacactaaaagctcgtttaagcttacgcacaaccagactttgactctatggaatgccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="99449" stop="101527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99749" g_stop="100018" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100019" i_stop="100810" i_length="792">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100811" g_stop="101227" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="686" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-U575693" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99749" e_stop="100018"/>
          <exon e_start="100811" e_stop="101227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAAAAAAAATAATAAATGAAAGGAATACAATTTCCATCTTTAAACAGAAACACCTTTATAATCTTCTTTTTGATCCATTTATCAATATTTTCACCATATTTTGCCATATCCATTAAACAGAAAGAAGCTCAACAGCAAGTAATTGGCTATGGTTACTCAATCAAATCTGTGGCTATCACTGGAAATTCAATTTTTGCTAATCTTCAACTCATCAGCACTTCTTCTGTTTTTGGTACTGATATTCACAATCTTATCCTCATTGCCAGGTTATTTTTCTTTACCTTTCTTATTTATTTTGGATCCGAATCTGATATTACTATTACTCGCCTGATATAATCGGTAAAATTGTTATTATATGTAAATTATAAAGTTATTATTATATGATTAAAAAATCGGGGTTGAAATTATGAAGGCAATCTTTTTCAGAAATATGGGATAAAATTGTTAACTAAAAAAATTAATATAACAAATTAGAAGGTAAATTCTTGTCATTGTGAATAACGTCACAACATAGAATGATTGATTGACGTTGACGTTTTATTTTTGAATGTAAATATCAAATTTCAATATTGAGTTAATATATTTTCAATTGATAATAGGTATTTGTAGATTAGTTTAATATTGAGCGTATTTTAATATAAATAAAATAAGAGTTATATTATAAAATTTGCCAAAAAATAATAATTCAAGTAAATAATATAATATATATAAAAATACTTATTCGCTTATGACATGAATTTTATATAATATAGTAAAATACATGTCAATTAATTGTGATTAAATAAAATAAATTATTAATTTAAACATATATCATAATTAAGTAAAATGAATTATTAATTTAAACATATATCATGCATTGTATTGCTTTGGTTTGTGCAGGTAAGTTTTAATCCTAATATATAGTTATGAAAATTGTAATTTTTTTTTTTATCATCTATATATAACTTCTTCTTTTTTTAATTTTAGTCTTATAATAAACAATATTTTGTTTAGTTAATGTAAATAAATTAACTTTATTAAAAAAATTGTTTAATTTGTTTTTTTTTCCCTCGTTACAGTTTGGAAACAAACGATCGTCTCCGAATACGAATAACGGACGTTAACCACCAACGATGGGAAGTGCCGGAAGAAATTCTCCGCCGTCCACCACCGCCATCGCCGCCGTCAACTTCCAACTCCTCATCAGAAAACCACTTCCCAATTACGCTCTCTAACCCAAACTCAGACCTAGAGTTCACCCTTCACAACACCACCCCATTCAGCTTCACCGTCCGCCGGCGATTCACCGGGGATACTCTTTTCGATACTTCGCCGGAGAACGAAAACCCCGATACATTCCTCATATTCAAAGATCAGTACATCCAGATCTCCTCGGCACTACCAACTACCAGAGCTAACCTTTACGGGCTCGGAGAGCACACTAAAAGCTCGTTTAAGCTTACGCACAACCAGACTTTGACTCTATGGAATGCCGA</genome_strand>
        <mrna_strand>TTGAA-AAAAAAATAATAAATGAAAGGAATACAATTTCCATCTTTAAACAGAAACACCTTTATAATCTTCTTTTTGATCCATTTATCAATATTTTCACCATATTTTGCCATATCCATTAAACAGAAAGAAGCTCAACAGCAAGTAATTGGCTATGGTTACTCAATCAAATCTGTGGCTATCACTGGAAATTCAATTTTTGCTAATCTTCAACTCATCAGCACTTCTTCTGTTTTTGGTACTGATATTCACAATCTTATCCTCATTGCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAACAAACGATCGTCTCCGAATACGAATAACGGACGTTAACCACCAACGATGGGAAGTGCCGGAAGAAATTCTCCGCCGTCCACCACCGCCATCGCCGCCGTCAACTTCCAACTCCTCATCAGAAAACCACTTCCCAATTACGCTCTCTAACCCAAACTCAGACCTAGAGTTCACCCTTCACAACACCACCCCATTCAGCTTCACCGTCCGCCGGCGATTCACCGGGGATACTCTTTTCGATACTTCGCCGGAGAACGAAAACCCCGATACATTCCTCATATTCAAAGATCAGTACATCCAGATCTCCTCGGCACTACCAACTACCAGAGCTAACCTTTACGGGCTCGGAGAGCACACTAAAAGCTCGTTTAAGCTTACGCACAACCAGACTTTGACTCTATGGAATGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585698" ref_strand="+" ref_description="SGN-U585698 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157354200|emb|CAO46781.1| (e_value=0) unnamed; (*ATH) AT5G11720.1 (e_value=0) | Symbol: None | alpha-glucosidase 1 (AGLU1), identical to alpha-glucosidase 1 (Arabidopsis thaliana) GI:2323344 | chr5:3776815-3780129 FORWARD | Aliases: T22P22.110, T22P22_110; (*SWP) sp|O04893|AGLU_SPIOL (e_value=0) Alpha-glucosidase OS=Spinacia oleracea; ">
      <seq>cacgagggtggaaagttatgcaaaggctaggataccgctggaggttatgtggactgatattgattacatggatggttttaaggacttcacactcgatccagttaacttcccactggagcgggtaaatttttttctcaggaagcttcatcagaatgatcagaaatatgtactaatagtagatccaggaattagtatcaacaatacatatgacacctataggagaggcatggaagcagatgtcttcataaaacgcgataatatgccccaccaaggggttgtttggccagggaatgtttactatcctgattttctaaatccagctactgaagtattttggagaaatgaaattgagaagttccaggatctcgtaccttttgatggcctgtggcttgacatgaatgaattgtcaaacttcattacttcccctcctacaccatcatccacctttgatgaccctccgtacaagataaacaactctggcgatcacttgcccatcaactatagaacagttccagccacttcaacacattttggtaatacaatagattataatgtccataacctttatggattactagaatctagagccacctatagtgctttggttaatgtcactggtaaaaggccattcattcttgcaagatcaacttttcttggctctggcagatatacgtcacattggactggagacaatgctgctacatggaatgatttggcatactccattcctactatcttgaactttggattgtttggaattccaatggttggagctgatatatgtggtttttcaagtaacactactgaagagctttgccgccgctggattcagcttggagcattctatccatttgcaagagaccactctgctaaggacacaaccccccaagagctctatagttgggattcagttgctgcagcggccaagaaagtccttgggctccgatatcagttacttccgtacttttatatgcttatgtacaaggcacatacaaaagggactcccattgcacgacccctcttcttctctttccctcaagatgccaagacatttgatatcagcacgcagttccttctcggtaaaggtgtcatgatctcacctgtacttaagcaaggagcaacctctgttgatgcatatttccctgctggaaactgatcatataaatgtacacgttcgtgaagggaacatattggtcatgcaaggggaagcaatgacaacacaagctgcacagaggactgcattcaaactccttgtcgtgctgagcagcagcgaaaacagcacaggagaactatttgtggacgatgacgatgaggtgcagatgggaagagagggagggaggtggacgttcgttaagtttaacagcaatatcattggcaataaaattgtggttaaatcagaggttgtgaatggacggtacgcgctggatcaaggattggtccttgaaaagatgacattattaggtttggaaaatgtgagaggattgaagagctatgagcttgttggatcacaccagcaagggaacacaacaatgaatgaaaaacttaaacagagtggacagtttgttgctatggaaatctcaaagatgtcaatactgataggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="101962" stop="104679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102263" g_stop="102439" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="185" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102440" i_stop="102558" i_length="119">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102559" g_stop="103205" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="832" r_length="647" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103206" i_stop="103535" i_length="330">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103536" g_stop="103858" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="1155" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103859" i_stop="103932" i_length="74">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103933" g_stop="104379" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1156" r_stop="1602" r_length="447" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-U585698" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1594</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102263" e_stop="102439"/>
          <exon e_start="102559" e_stop="103205"/>
          <exon e_start="103536" e_stop="103858"/>
          <exon e_start="103933" e_stop="104379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAGTTATGCAAAGGCTAGGATACCGCTGGAGGTTATGTGGACTGATATTGATTACATGGATGGTTTTAAGGACTTCACACTCGATCCAGTTAACTTCCCACTGGAGCGGGTAAATTTTTTTCTCAGGAAGCTTCATCAGAATGATCAGAAATATGTACTAATAGTAGATCCAGGTAACTGGTCTCCGTCATCAAGTTTTAACAATTTAACATTTACCTAGATAAATTAGATACGAGTACGTCTCATCATCATGTAACAAGTGTTATTTTGTTTGTCTTTCTTTTTACCGCAGGAATTAGTATCAACAATACATATGACACCTATAGGAGAGGCATGGAAGCAGATGTCTTCATAAAACGCGATAATATGCCCCACCAAGGGGTTGTTTGGCCAGGGAATGTTTACTATCCTGATTTTCTAAATCCAGCTACTGAAGTATTTTGGAGAAATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATTACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCGTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAACTATAGAACAGTTCCAGCCACTTCAACACATTTTGGTAATACAATAGATTATAATGTCCATAACCTTTATGGATTACTAGAATCTAGAGCCACCTATAGTGCTTTGGTTAATGTCACTGGTAAAAGGCCATTCATTCTTGCAAGATCAACTTTTCTTGGCTCTGGCAGATATACGTCACATTGGACTGGAGACAATGCTGCTACATGGAATGATTTGGCATACTCCATTCCTACTATCTTGAACTTTGGATTGTTTGGAATTCCAATGGTTGGAGCTGATATATGTGGTTTTTCAAGTAACACTACTGAAGAGCTTTGCCGCCGCTGGATTCAGGTAAATTCATGCTTGGAGTTTTGTCAACAATGCCGCCTCCAATCTCTCTTTCTCCCCCTAAAGCTTTAACTTTTCACCAATGTTAAATAGCCATGAAATGTGTTGTTTTTCAAGGAACACTGTTGCATTATAAAGTTCAATGAACCAGAGTTATTCGTCGTCTTAAATAGTATGCTTTAAAATTGTGTTTAAGAAAAGTTAAAGCATGTGTCTATCTCTCAGTTTGACCAAATCGTTAGTTTGATACCGTAGAAGAAGAATTTTATCATAATATTAGGAGCTCTCTTCGTCTTTGACTTCTTTGTAATGAGAGAGATTGGCTTTATGCAGCTTGGAGCATTCTATCCATTTGCAAGAGACCACTCTGCTAAGGACACAACCCCCCAAGAGCTCTATAGTTGGGATTCAGTTGCTGCAGCGGCCAAGAAAGTCCTTGGGCTCCGATATCAGTTACTTCCGTACTTTTATATGCTTATGTACAAGGCACATACAAAAGGGACTCCCATTGCACGACCCCTCTTCTTCTCTTTCCCTCAAGATGCCAAGACATTTGATATCAGCACGCAGTTCCTTCTCGGTAAAGGTGTCATGATCTCACCTGTACTTAAGCAAGGAGCAACCTCTGTTGATGCATATTTCCCTGCTGGAAACTGGTTTGACCTCTTCAATTACTCTCGCTTCGTGAGTTTGAATCAAGGAACATATCTGACACTTGACGCACCACCAGATCATATAAATGTACACGTTCGTGAAGGGAACATATTGGTCATGCAAGGGGAAGCAATGACAACACAAGCTGCACAGAGGACTGCATTCAAACTCCTTGTCGTGCTGAGCAGCAGCGAAAACAGCACAGGAGAACTATTTGTGGACGATGACGATGAGGTGCAGATGGGAAGAGAGGGAGGGAGGTGGACGTTCGTTAAGTTTAACAGCAATATCATTGGCAATAAAATTGTGGTTAAATCAGAGGTTGTGAATGGACGGTACGCGCTGGATCAAGGATTGGTCCTTGAAAAGATGACATTATTAGGTTTGGAAAATGTGAGAGGATTGAAGAGCTATGAGCTTGTTGGATCACACCAGCAAGGGAACACAACAATGAAGGAAAAACTTAAACAGAGTGGACAGTTTGTTGCTATGGAAATCTCAGAGATGTCAATACTGATAGGGA</genome_strand>
        <mrna_strand>TGGAAAGTTATGCAAAGGCTAGGATACCGCTGGAGGTTATGTGGACTGATATTGATTACATGGATGGTTTTAAGGACTTCACACTCGATCCAGTTAACTTCCCACTGGAGCGGGTAAATTTTTTTCTCAGGAAGCTTCATCAGAATGATCAGAAATATGTACTAATAGTAGATCCAG.......................................................................................................................GAATTAGTATCAACAATACATATGACACCTATAGGAGAGGCATGGAAGCAGATGTCTTCATAAAACGCGATAATATGCCCCACCAAGGGGTTGTTTGGCCAGGGAATGTTTACTATCCTGATTTTCTAAATCCAGCTACTGAAGTATTTTGGAGAAATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATTACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCGTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAACTATAGAACAGTTCCAGCCACTTCAACACATTTTGGTAATACAATAGATTATAATGTCCATAACCTTTATGGATTACTAGAATCTAGAGCCACCTATAGTGCTTTGGTTAATGTCACTGGTAAAAGGCCATTCATTCTTGCAAGATCAACTTTTCTTGGCTCTGGCAGATATACGTCACATTGGACTGGAGACAATGCTGCTACATGGAATGATTTGGCATACTCCATTCCTACTATCTTGAACTTTGGATTGTTTGGAATTCCAATGGTTGGAGCTGATATATGTGGTTTTTCAAGTAACACTACTGAAGAGCTTTGCCGCCGCTGGATTCAG..........................................................................................................................................................................................................................................................................................................................................CTTGGAGCATTCTATCCATTTGCAAGAGACCACTCTGCTAAGGACACAACCCCCCAAGAGCTCTATAGTTGGGATTCAGTTGCTGCAGCGGCCAAGAAAGTCCTTGGGCTCCGATATCAGTTACTTCCGTACTTTTATATGCTTATGTACAAGGCACATACAAAAGGGACTCCCATTGCACGACCCCTCTTCTTCTCTTTCCCTCAAGATGCCAAGACATTTGATATCAGCACGCAGTTCCTTCTCGGTAAAGGTGTCATGATCTCACCTGTACTTAAGCAAGGAGCAACCTCTGTTGATGCATATTTCCCTGCTGGAAACTG..........................................................................ATCATATAAATGTACACGTTCGTGAAGGGAACATATTGGTCATGCAAGGGGAAGCAATGACAACACAAGCTGCACAGAGGACTGCATTCAAACTCCTTGTCGTGCTGAGCAGCAGCGAAAACAGCACAGGAGAACTATTTGTGGACGATGACGATGAGGTGCAGATGGGAAGAGAGGGAGGGAGGTGGACGTTCGTTAAGTTTAACAGCAATATCATTGGCAATAAAATTGTGGTTAAATCAGAGGTTGTGAATGGACGGTACGCGCTGGATCAAGGATTGGTCCTTGAAAAGATGACATTATTAGGTTTGGAAAATGTGAGAGGATTGAAGAGCTATGAGCTTGTTGGATCACACCAGCAAGGGAACACAACAATGAATGAAAAACTTAAACAGAGTGGACAGTTTGTTGCTATGGAAATCTCAAAGATGTCAATACTGATAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>13</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3156" PGL_stop="1184"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3156" e_stop="3073"/>
            <exon e_start="2791" e_stop="2129"/>
            <exon e_start="1213" e_stop="1184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-intron don_prob="0.877" acc_prob="0.982" e_score="0.980"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="3156" e_stop="3073" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3072" i_stop="2792" i_length="281"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="2791" e_stop="2129" e_length="663"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="0.982">
            <gDNA_intron_boundary i_start="2128" i_stop="1214" i_length="915"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1213" e_stop="1184" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3156" stop="3073"/>
              <exon start="2791" stop="2129"/>
              <exon start="1213" stop="1184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGT : GTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATTGGGATGCAGAAAGTACGAAATATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGTATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAG : GCTCGTGGTTCACTTGAGCGGGATGATGAG</gDNA_template>
            <first_frame> K  R  I  P  S  F  R  R  P  Q  A  V  D  I  F  L  V  N  Y  S  L  H  L  N  L  C  G  G  :  V  *  D  H  K  F  Q  K  P  F  F  L  S  C  L  T  *  I  G  M  Q  K  V  R  N  I  *  R  C  H  S  F  W  N  *  L  K  R  N  E  C  H  I  V  *  E  K  G  S  T  M  F  H  D  I  *  Q  I  V  G  L  E  C  L  I  Y  S  V  K  S  I  L  S  F  L  A  E  F  L  *  *  Y  L  P  Y  L  T  R  N  S  C  R  D  *  R  R  E  S  C  P  D  L  T  V  P  H  F  *  S  F  V  *  I  L  *  K  Y  A  I  F  S  F  E  L  D  T  T  F  *  R  K  Y  N  H  Y  I  L  S  N  T  N  G  I  F  S  S  F  H  W  I  D  H  D  C  S  L  L  V  F  I  P  A  *  Y  *  L  L  F  H  V  T  S  L  R  R  P  T  S  L  H  D  R  M  R  D  S  D  D  D  D  Y  Q  D  R  D  Y  D  V  A  A  L  A  N  N  L  S  Q  A  F  R  Y  G  I  Y  N  N  D  E  L  D  E  :  A  R  G  S  L  E  R  D  D  E </first_frame>
            <second_frame>  K  E  Y  L  L  S  G  G  L  R  Q  W  T  F  F  L  L  I  T  L  S  I  S  I  Y  V  A  V :   F  E  T  T  S  F  K  S  L  S  F  F  L  A  S  H  K  L  G  C  R  K  Y  E  I  Y  K  D  V  I  L  F  G  T  D  *  K  G  M  S  V  T  *  F  R  K  K  G  V  P  C  F  M  I  Y  N  K  L  W  A  L  N  V  S  F  I  L  *  K  A  F  *  V  S  *  P  N  S  S  N  D  I  Y  L  T  L  Q  E  I  L  A  A  I  E  G  E  N  H  A  Q  I  *  L  F  L  T  F  D  R  L  C  K  F  Y  K  S  T  P  F  F  H  L  S  W  T  Q  H  F  E  E  N  I  I  I  T  S  F  L  I  P  M  V  Y  F  H  L  F  I  G  L  I  M  I  V  V  C  *  S  L  Y  Q  H  N  I  D  F  Y  F  M  *  P  L  S  G  D  P  H  H  C  M  T  E  *  G  T  V  M  M  M  I  I  K  I  E  T  M  M  L  Q  L  W  Q  I  T  *  A  R  P  S  A  M  E  S  I  T  T  M  N  L  M  R :   L  V  V  H  L  S  G  M  M   </second_frame>
            <third_frame>   K  N  T  F  F  Q  E  A  S  G  S  G  H  F  S  C  *  L  L  S  P  S  Q  F  M  W  R   : C  L  R  P  Q  V  S  K  A  F  L  S  F  L  P  H  I  N  W  D  A  E  S  T  K  Y  I  K  M  S  F  F  L  E  L  T  K  K  E  *  V  S  H  S  L  G  K  R  E  Y  H  V  S  *  Y  I  T  N  C  G  P  *  M  S  H  L  F  C  K  K  H  F  E  F  P  S  R  I  P  L  M  I  F  T  L  P  Y  K  K  F  L  P  R  L  K  E  R  I  M  P  R  F  D  C  S  S  L  L  I  V  C  V  N  F  I  K  V  R  H  F  F  I  *  V  G  H  N  I  L  K  K  I  *  S  L  H  P  F  *  Y  Q  W  Y  I  F  I  F  S  L  D  *  S  *  L  *  F  V  S  L  Y  T  S  I  I  L  T  F  I  S  C  N  L  S  Q  E  T  H  I  T  A  *  P  N  E  G  Q  *  *  *  *  L  S  R  *  R  L  *  C  C  S  S  G  K  *  L  K  P  G  L  P  L  W  N  L  *  Q  R  *  T  *  *   : G  S  W  F  T  *  A  G  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2296" stop="2129"/>
                    <exon start="1213" stop="1184"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFHVTSLRRPTSLHDRMRDSDDDDYQDRDYDVAALANNLSQAFRYGIYNNDELDEARGSLERDDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="18990" PGL_stop="12168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18990" e_stop="18693"/>
            <exon e_start="15312" e_stop="15209"/>
            <exon e_start="13837" e_stop="13751"/>
            <exon e_start="13607" e_stop="13532"/>
            <exon e_start="13423" e_stop="13349"/>
            <exon e_start="12871" e_stop="12818"/>
            <exon e_start="12397" e_stop="12338"/>
            <exon e_start="12253" e_stop="12168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.837" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.955" e_score="0.973"/>
          <exon-intron don_prob="0.994" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.354" e_score="0.983"/>
          <exon-only e_score="0.895"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18990" e_stop="18693" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18692" i_stop="15313" i_length="3380"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15312" e_stop="15209" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.837">
            <gDNA_intron_boundary i_start="15208" i_stop="13838" i_length="1371"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13837" e_stop="13751" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.964">
            <gDNA_intron_boundary i_start="13750" i_stop="13608" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13607" e_stop="13532" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.902">
            <gDNA_intron_boundary i_start="13531" i_stop="13424" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="13423" e_stop="13349" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.955">
            <gDNA_intron_boundary i_start="13348" i_stop="12872" i_length="477"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12871" e_stop="12818" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.964">
            <gDNA_intron_boundary i_start="12817" i_stop="12398" i_length="420"/>
          </intron>
          <exon e_serial="7" e_score="0.983">
            <gDNA_exon_boundary e_start="12397" e_stop="12338" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.967" acc_prob="0.354">
            <gDNA_intron_boundary i_start="12337" i_stop="12254" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="0.895">
            <gDNA_exon_boundary e_start="12253" e_stop="12168" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18990" stop="18693"/>
              <exon start="15312" stop="15209"/>
              <exon start="13837" stop="13751"/>
              <exon start="13607" stop="13532"/>
              <exon start="13423" stop="13349"/>
              <exon start="12871" stop="12818"/>
              <exon start="12397" stop="12338"/>
              <exon start="12253" stop="12168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCTTCTTTTTTCTTCTCAAAGGTCCCCAAAAAATACAGCAAGGAAAAAAAATGCTTCTTTCCACCGTCTCACAATTGGTGCTAAGTATAATTCTTGATAACAATTGAACCGAATCCAATCTTATCAAAGACTGCTCCCCACCTTTTTCTAGGGCTTCCTGGGTTCAAGATCATTGTTGGGGTTGTTTTCTTTTTGTTCCTAGATCCAAATTGTTGAAAATTCTCTTCTGGGTCGGTTCTTGATTCTGAAAAAATGGCTATGTTTTGGCGTATGGCTGGCCTCTCCACTGCTTCTCCA : GTGGAGACAATTTTGGATAAGGAAAATTTTGCACTGGATGAGCTCTTGGACGAGGATGAAATAATTCAAGAATGTAAAGCTCTTAATGGACGCCTTATTAACTT : TCTGCGAGAAAGAGCTCAAGTTGAACAACTTGTCAGGTACATAGTGGAAGAGGCTCCAGAAGATGCAGAGAAGAAACGAACTTTTAA : GTTTCCTTTTATTGCTTGTGAAATCTTTACATGCGAGGTGGACATAATTCTTAAAGCATTGGTTGAGAATGAGGAG : CTAATGAACCTGCTATTCTCATTTTTGGAACCTGAGCACACACATAGTACTCTGTTGGCCGGTTACTTCAGCAAG : GTTGTCATATGCTTGTTGCTGCGGAAAACATCAGCTTTTATGAACTACGTACAA : GCTCATCAAGATATTATCAAGAAGTTGGTTGATCTCATTGGAATTACATCCATCATGGAG : GTGTTAATCCGCCTAATTGGCACCGATGAACATTTGTATAGCAACTTCTCGGAGAACATGCAGTGGTTGGAAGATACAAATGTGCT</gDNA_template>
            <first_frame> G  F  F  F  L  L  K  G  P  Q  K  I  Q  Q  G  K  K  M  L  L  S  T  V  S  Q  L  V  L  S  I  I  L  D  N  N  *  T  E  S  N  L  I  K  D  C  S  P  P  F  S  R  A  S  W  V  Q  D  H  C  W  G  C  F  L  F  V  P  R  S  K  L  L  K  I  L  F  W  V  G  S  *  F  *  K  N  G  Y  V  L  A  Y  G  W  P  L  H  C  F  S   : S  G  D  N  F  G  *  G  K  F  C  T  G  *  A  L  G  R  G  *  N  N  S  R  M  *  S  S  *  W  T  P  Y  *  L  :  S  A  R  K  S  S  S  *  T  T  C  Q  V  H  S  G  R  G  S  R  R  C  R  E  E  T  N  F  *  :  V  S  F  Y  C  L  *  N  L  Y  M  R  G  G  H  N  S  *  S  I  G  *  E  *  G   : A  N  E  P  A  I  L  I  F  G  T  *  A  H  T  *  Y  S  V  G  R  L  L  Q  Q   : G  C  H  M  L  V  A  A  E  N  I  S  F  Y  E  L  R  T   : S  S  S  R  Y  Y  Q  E  V  G  *  S  H  W  N  Y  I  H  H  G   : G  V  N  P  P  N  W  H  R  *  T  F  V  *  Q  L  L  G  E  H  A  V  V  G  R  Y  K  C  A </first_frame>
            <second_frame>  A  S  F  F  F  S  K  V  P  K  K  Y  S  K  E  K  K  C  F  F  P  P  S  H  N  W  C  *  V  *  F  L  I  T  I  E  P  N  P  I  L  S  K  T  A  P  H  L  F  L  G  L  P  G  F  K  I  I  V  G  V  V  F  F  L  F  L  D  P  N  C  *  K  F  S  S  G  S  V  L  D  S  E  K  M  A  M  F  W  R  M  A  G  L  S  T  A  S  P  :  V  E  T  I  L  D  K  E  N  F  A  L  D  E  L  L  D  E  D  E  I  I  Q  E  C  K  A  L  N  G  R  L  I  N  F :   L  R  E  R  A  Q  V  E  Q  L  V  R  Y  I  V  E  E  A  P  E  D  A  E  K  K  R  T  F  K :   F  P  F  I  A  C  E  I  F  T  C  E  V  D  I  I  L  K  A  L  V  E  N  E  E  :  L  M  N  L  L  F  S  F  L  E  P  E  H  T  H  S  T  L  L  A  G  Y  F  S  K  :  V  V  I  C  L  L  L  R  K  T  S  A  F  M  N  Y  V  Q  :  A  H  Q  D  I  I  K  K  L  V  D  L  I  G  I  T  S  I  M  E  :  V  L  I  R  L  I  G  T  D  E  H  L  Y  S  N  F  S  E  N  M  Q  W  L  E  D  T  N  V   </second_frame>
            <third_frame>   L  L  F  S  S  Q  R  S  P  K  N  T  A  R  K  K  N  A  S  F  H  R  L  T  I  G  A  K  Y  N  S  *  *  Q  L  N  R  I  Q  S  Y  Q  R  L  L  P  T  F  F  *  G  F  L  G  S  R  S  L  L  G  L  F  S  F  C  S  *  I  Q  I  V  E  N  S  L  L  G  R  F  L  I  L  K  K  W  L  C  F  G  V  W  L  A  S  P  L  L  L  Q :   W  R  Q  F  W  I  R  K  I  L  H  W  M  S  S  W  T  R  M  K  *  F  K  N  V  K  L  L  M  D  A  L  L  T   : F  C  E  K  E  L  K  L  N  N  L  S  G  T  *  W  K  R  L  Q  K  M  Q  R  R  N  E  L  L   : S  F  L  L  L  L  V  K  S  L  H  A  R  W  T  *  F  L  K  H  W  L  R  M  R  S :   *  *  T  C  Y  S  H  F  W  N  L  S  T  H  I  V  L  C  W  P  V  T  S  A  R :   L  S  Y  A  C  C  C  G  K  H  Q  L  L  *  T  T  Y  K :   L  I  K  I  L  S  R  S  W  L  I  S  L  E  L  H  P  S  W  R :   C  *  S  A  *  L  A  P  M  N  I  C  I  A  T  S  R  R  T  C  S  G  W  K  I  Q  M  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18773" stop="18693"/>
                    <exon start="15312" stop="15209"/>
                    <exon start="13837" stop="13751"/>
                    <exon start="13607" stop="13532"/>
                    <exon start="13423" stop="13349"/>
                    <exon start="12871" stop="12818"/>
                    <exon start="12397" stop="12338"/>
                    <exon start="12253" stop="12170"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFSSGSVLDSEKMAMFWRMAGLSTASPVETILDKENFALDELLDEDEIIQECKALNGRLINFLRERAQVEQLVRYIVEEAPEDAEKKRTFKFPFIACEIFTCEVDIILKALVENEELMNLLFSFLEPEHTHSTLLAGYFSKVVICLLLRKTSAFMNYVQAHQDIIKKLVDLIGITSIMEVLIRLIGTDEHLYSNFSENMQWLEDTNV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="29146" PGL_stop="27541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29146" e_stop="28582"/>
            <exon e_start="27711" e_stop="27541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29146" e_stop="28582" e_length="565"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.985">
            <gDNA_intron_boundary i_start="28581" i_stop="27712" i_length="870"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="27711" e_stop="27541" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29146" stop="28582"/>
              <exon start="27711" stop="27541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568794" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAAACCCTAGTTACTACATTGCTGTTCCTTTGCTTTTATTTCAATATCAGTCCAAATTTGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACACCCAGAAGGGTAGTAAGAAGAGATTTTCAATTGAAAGCGACCCATTTTTCCATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATAGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGCGGAAGGATGAAGAAGAGGAAGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAAAGGCTGGCGGAGACTTTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAGAGAGAGTGAAGAGGAATATGATAGAGAGGAGAGGGAAGCAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGTTCCAGAAAAGCTATTGCTTCCAG : GATTCAAAAACCCACCGAGGGATTTCACCTTTTAGTGAAACATCGACAGTCCGTAACTGCTGTGACTTTATCTGAGGATGACTTAAAGGGATTTTCATCTTCTAAAGATGGCACTATTGTTTGCTGGGACGTGGACAGTGGAAAGACAGAAAAGTATGCATGGCCTACTGA</gDNA_template>
            <first_frame> L  K  P  *  L  L  H  C  C  S  F  A  F  I  S  I  S  V  Q  I  C  N  *  L  *  H  I  S  A  K  V  V  N  F  K  L  T  I  E  S  *  R  T  *  K  R  R  K  L  Q  L  K  T  P  R  R  V  V  R  R  D  F  Q  L  K  A  T  H  F  S  M  K  T  T  T  *  K  G  E  R  D  L  E  M  M  K  I  *  R  A  V  M  I  Q  R  T  F  M  G  L  M  M  K  E  W  I  G  M  S  G  R  M  K  K  R  K  R  R  R  R  R  Q  L  R  R  E  K  G  W  R  R  L  F  C  I  V  *  G  S  R  R  G  R  K  R  K  K  E  R  V  K  R  N  M  I  E  R  R  G  K  Q  *  E  T  H  G  W  *  T  C  C  R  R  S  R  W  R  A  V  V  V  P  E  K  L  L  L  P   : G  F  K  N  P  P  R  D  F  T  F  *  *  N  I  D  S  P  *  L  L  *  L  Y  L  R  M  T  *  R  D  F  H  L  L  K  M  A  L  L  F  A  G  T  W  T  V  E  R  Q  K  S  M  H  G  L  L  </first_frame>
            <second_frame>  *  N  P  S  Y  Y  I  A  V  P  L  L  L  F  Q  Y  Q  S  K  F  A  T  D  C  N  I  F  L  Q  K  L  *  T  L  S  S  Q  L  N  H  E  E  P  E  K  E  E  S  F  S  S  K  H  P  E  G  *  *  E  E  I  F  N  *  K  R  P  I  F  P  *  R  Q  R  L  E  K  A  K  E  I  W  R  *  *  R  Y  R  E  Q  *  *  F  R  G  H  L  W  V  *  *  *  R  S  G  *  E  *  A  E  G  *  R  R  G  R  G  G  G  D  G  S  *  E  E  K  K  A  G  G  D  F  F  A  *  Y  E  G  V  E  E  E  G  R  G  R  K  R  E  *  R  G  I  *  *  R  G  E  G  S  N  E  R  L  M  D  G  R  H  V  A  E  G  A  D  G  G  Q  W  S  F  Q  K  S  Y  C  F  Q  :  D  S  K  T  H  R  G  I  S  P  F  S  E  T  S  T  V  R  N  C  C  D  F  I  *  G  *  L  K  G  I  F  I  F  *  R  W  H  Y  C  L  L  G  R  G  Q  W  K  D  R  K  V  C  M  A  Y  * </second_frame>
            <third_frame>   K  T  L  V  T  T  L  L  F  L  C  F  Y  F  N  I  S  P  N  L  Q  L  I  V  T  Y  F  C  K  S  C  E  L  *  A  H  N  *  I  M  K  N  L  K  K  K  K  A  S  A  Q  N  T  Q  K  G  S  K  K  R  F  S  I  E  S  D  P  F  F  H  E  D  N  D  L  K  R  R  K  R  F  G  D  D  E  D  I  E  S  S  D  D  S  E  D  I  Y  G  S  D  D  E  G  V  D  R  N  E  R  K  D  E  E  E  E  E  E  E  E  T  A  A  E  K  R  K  R  L  A  E  T  F  L  H  S  M  R  E  S  K  R  K  E  E  E  E  R  E  S  E  E  E  Y  D  R  E  E  R  E  A  M  R  D  S  W  M  V  D  M  L  Q  K  E  Q  M  E  G  S  G  R  S  R  K  A  I  A  S  R :   I  Q  K  P  T  E  G  F  H  L  L  V  K  H  R  Q  S  V  T  A  V  T  L  S  E  D  D  L  K  G  F  S  S  S  K  D  G  T  I  V  C  W  D  V  D  S  G  K  T  E  K  Y  A  W  P  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29030" stop="28582"/>
                    <exon start="27711" stop="27543"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMKNLKKKKASAQNTQKGSKKRFSIESDPFFHEDNDLKRRKRFGDDEDIESSDDSEDIYGSDDEGVDRNERKDEEEEEEEETAAEKRKRLAETFLHSMRESKRKEEEERESEEEYDREEREAMRDSWMVDMLQKEQMEGSGRSRKAIASRIQKPTEGFHLLVKHRQSVTAVTLSEDDLKGFSSSKDGTIVCWDVDSGKTEKYAWPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="47162" PGL_stop="54200"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47162" e_stop="47319"/>
            <exon e_start="49812" e_stop="50187"/>
            <exon e_start="53203" e_stop="53324"/>
            <exon e_start="53429" e_stop="53624"/>
            <exon e_start="54122" e_stop="54200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.751" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47162" e_stop="47319" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.877">
            <gDNA_intron_boundary i_start="47320" i_stop="49811" i_length="2492"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49812" e_stop="50187" e_length="376"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.966">
            <gDNA_intron_boundary i_start="50188" i_stop="53202" i_length="3015"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53203" e_stop="53324" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.967">
            <gDNA_intron_boundary i_start="53325" i_stop="53428" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53429" e_stop="53624" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.751" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53625" i_stop="54121" i_length="497"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54122" e_stop="54200" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47162" stop="47319"/>
              <exon start="49812" stop="50187"/>
              <exon start="53203" stop="53324"/>
              <exon start="53429" stop="53624"/>
              <exon start="54122" stop="54200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573905" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTCTATAGTTCTAATTTATATCCACAAAGTGAAAGAATTATGATGATGATGCAAGATGTTTGGAATCAGTTAGGTCCAGCCATTGCAACAATCATGTTTGCCTGGACCATGTACCAGAACTATTTCCCTCATGAACTTCGTGGCCATATTCGAAG : GCATTTGATTGCATGTGATTCCATGGAAAATTCAAAATCAGTGAACAAGGAGGACGTGATTCCTGAAGAAGCGAAGGTGAAATTGAAGAAATTGGCGTCAGAATGGGACGATATAGTGGATCCGAATGCATTAGATGTGTTCAGATTGAAGGGCGCGATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGG : ACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCA : AAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCAATCATCTAAGCACGGGATGCTGCCACAACGACTTGCAGTATGGGAACATAATGATGGATGAAGAGACAAGATCAATAACCTTTATT : GACTATGAATATGCTGGTTACAACCATGTTGCATTTGATATAGCAAATCATTTTTGTGAAATGGTTGCTGACTACCATA</gDNA_template>
            <first_frame> I  F  Y  S  S  N  L  Y  P  Q  S  E  R  I  M  M  M  M  Q  D  V  W  N  Q  L  G  P  A  I  A  T  I  M  F  A  W  T  M  Y  Q  N  Y  F  P  H  E  L  R  G  H  I  R  R :   H  L  I  A  C  D  S  M  E  N  S  K  S  V  N  K  E  D  V  I  P  E  E  A  K  V  K  L  K  K  L  A  S  E  W  D  D  I  V  D  P  N  A  L  D  V  F  R  L  K  G  A  M  T  N  E  V  Y  Q  I  K  W  P  S  K  N  P  E  K  Q  R  S  R  K  V  L  V  R  I  Y  G  K  G  V  D  V  F  F  D  R  Q  N  E  I  K  I  F  E  F  M  S  K  Q  G  Q  G  P  R  L  L  G  R  F  Q  S  G  R  I  E  E  F  I  R  A  R  :  T  L  S  A  P  D  L  R  D  P  E  I  S  S  L  I  A  A  K  M  R  E  F  H  V  L  D  M  P  G  P  K  T  V  I  L  W  D  R  L  Q :   N  W  L  N  V  A  K  G  L  A  S  T  E  E  A  K  D  F  K  L  D  L  L  K  D  E  I  V  L  L  E  K  N  L  A  G  N  H  L  S  T  G  C  C  H  N  D  L  Q  Y  G  N  I  M  M  D  E  E  T  R  S  I  T  F  I  :  D  Y  E  Y  A  G  Y  N  H  V  A  F  D  I  A  N  H  F  C  E  M  V  A  D  Y  H  </first_frame>
            <second_frame>  Y  S  I  V  L  I  Y  I  H  K  V  K  E  L  *  *  *  C  K  M  F  G  I  S  *  V  Q  P  L  Q  Q  S  C  L  P  G  P  C  T  R  T  I  S  L  M  N  F  V  A  I  F  E   : G  I  *  L  H  V  I  P  W  K  I  Q  N  Q  *  T  R  R  T  *  F  L  K  K  R  R  *  N  *  R  N  W  R  Q  N  G  T  I  *  W  I  R  M  H  *  M  C  S  D  *  R  A  R  *  R  T  R  C  I  K  S  N  G  P  V  R  T  R  K  S  N  D  L  G  R  C  W  *  G  S  M  G  K  V  L  M  C  S  L  I  G  R  M  K  L  R  F  L  S  L  C  L  S  K  A  K  D  L  A  C  L  V  D  F  R  V  V  V  L  R  N  S  F  E  L  G :   H  Y  Q  L  L  I  C  V  I  Q  R  Y  L  P  *  *  L  P  K  *  E  N  F  M  C  L  I  C  L  V  L  R  P  S  S  S  G  I  D  C   : K  I  G  L  M  *  P  K  V  W  L  L  L  K  K  L  R  T  L  S  W  T  F  *  K  M  R  L  Y  C  W  K  R  I  L  L  A  I  I  *  A  R  D  A  A  T  T  T  C  S  M  G  T  *  *  W  M  K  R  Q  D  Q  *  P  L  L :   T  M  N  M  L  V  T  T  M  L  H  L  I  *  Q  I  I  F  V  K  W  L  L  T  T  I </second_frame>
            <third_frame>   I  L  *  F  *  F  I  S  T  K  *  K  N  Y  D  D  D  A  R  C  L  E  S  V  R  S  S  H  C  N  N  H  V  C  L  D  H  V  P  E  L  F  P  S  *  T  S  W  P  Y  S  K  :  A  F  D  C  M  *  F  H  G  K  F  K  I  S  E  Q  G  G  R  D  S  *  R  S  E  G  E  I  E  E  I  G  V  R  M  G  R  Y  S  G  S  E  C  I  R  C  V  Q  I  E  G  R  D  D  E  R  G  V  S  N  Q  M  A  Q  *  E  P  G  K  A  T  I  *  E  G  V  G  E  D  L  W  E  R  C  *  C  V  L  *  S  A  E  *  N  *  D  F  *  V  Y  V  *  A  R  P  R  T  S  L  A  W  S  I  S  E  W  S  Y  *  G  I  H  S  S  S   : D  I  I  S  S  *  S  A  *  S  R  D  I  F  L  D  S  C  Q  N  E  R  I  S  C  A  *  Y  A  W  S  *  D  R  H  P  L  G  *  T  A  :  K  L  A  *  C  S  Q  R  S  G  F  Y  *  R  S  *  G  L  *  V  G  P  S  K  R  *  D  C  I  V  G  K  E  S  C  W  Q  S  S  K  H  G  M  L  P  Q  R  L  A  V  W  E  H  N  D  G  *  R  D  K  I  N  N  L  Y   : *  L  *  I  C  W  L  Q  P  C  C  I  *  Y  S  K  S  F  L  *  N  G  C  *  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47162" stop="47319"/>
                    <exon start="49812" stop="50187"/>
                    <exon start="53203" stop="53324"/>
                    <exon start="53429" stop="53624"/>
                    <exon start="54122" stop="54199"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>930</number_coding_nucleotides>
                  <number_encoded_amino_acids>310</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFYSSNLYPQSERIMMMMQDVWNQLGPAIATIMFAWTMYQNYFPHELRGHIRRHLIACDSMENSKSVNKEDVIPEEAKVKLKKLASEWDDIVDPNALDVFRLKGAMTNEVYQIKWPSKNPEKQRSRKVLVRIYGKGVDVFFDRQNEIKIFEFMSKQGQGPRLLGRFQSGRIEEFIRARTLSAPDLRDPEISSLIAAKMREFHVLDMPGPKTVILWDRLQNWLNVAKGLASTEEAKDFKLDLLKDEIVLLEKNLAGNHLSTGCCHNDLQYGNIMMDEETRSITFIDYEYAGYNHVAFDIANHFCEMVADYH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="49064" PGL_stop="48375"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49064" e_stop="48375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="49064" e_stop="48375" e_length="690"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49064" stop="48375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAAATTGACATATATCACCAAGTTACTAAGATGTAAATATTTTGTTACACAAAAAGATAAGATACTACACTATGTATTATGCAACAACCACTTCCTACATCATCATAGTATCTCTTGAATAACAAAATCAACAATGTTCAACAACAAAATTATTCAAAATATCTGAATCCTGGTTCTATGGGCAACACCTAATTGATCAAATATTTCCATGATCAAACTTTACTAACCCTTTACTAACATCATCATTAGTCCATTACTATCTCAGACTTGCAATTTTCCTTAGCACCATCACTTTCTGGCTTTTCCTTAGTCTCCATCGACGTCCCATTTTCGTTCACATCATCAGCCCTTTTCGCGTCTTCTGCAGCAGCTGCTGCTTCTTTCTTTTTCTTTTCGTTCTCGTTCTCTTCCTTCTCCTTCTCTGCCTTTTCTTCCTCAGCCTTCAATTTTGCTTCCACCTTTGCTGTTTCAATAGCTTTAACTAACCTCTCCAAGCAAGTATCTGCATTTTCCTTAGAAGACTTGGGCATCAAACTCTCAGCAACATCAGCTGGAGTTATATTAGTTTCCCCTAATAAACGATGAATCTCAGGAAAGTAATCATCATGAGACGTAACGTCTAGATAATTATTAGCAAGCACCTTGAAGGACTCAAAACAACAGTATGATAGCTCAATGTGTTTGTCCA</gDNA_template>
            <first_frame> R  K  L  T  Y  I  T  K  L  L  R  C  K  Y  F  V  T  Q  K  D  K  I  L  H  Y  V  L  C  N  N  H  F  L  H  H  H  S  I  S  *  I  T  K  S  T  M  F  N  N  K  I  I  Q  N  I  *  I  L  V  L  W  A  T  P  N  *  S  N  I  S  M  I  K  L  Y  *  P  F  T  N  I  I  I  S  P  L  L  S  Q  T  C  N  F  P  *  H  H  H  F  L  A  F  P  *  S  P  S  T  S  H  F  R  S  H  H  Q  P  F  S  R  L  L  Q  Q  L  L  L  L  S  F  S  F  R  S  R  S  L  P  S  P  S  L  P  F  L  P  Q  P  S  I  L  L  P  P  L  L  F  Q  *  L  *  L  T  S  P  S  K  Y  L  H  F  P  *  K  T  W  A  S  N  S  Q  Q  H  Q  L  E  L  Y  *  F  P  L  I  N  D  E  S  Q  E  S  N  H  H  E  T  *  R  L  D  N  Y  *  Q  A  P  *  R  T  Q  N  N  S  M  I  A  Q  C  V  C  P </first_frame>
            <second_frame>  G  N  *  H  I  S  P  S  Y  *  D  V  N  I  L  L  H  K  K  I  R  Y  Y  T  M  Y  Y  A  T  T  T  S  Y  I  I  I  V  S  L  E  *  Q  N  Q  Q  C  S  T  T  K  L  F  K  I  S  E  S  W  F  Y  G  Q  H  L  I  D  Q  I  F  P  *  S  N  F  T  N  P  L  L  T  S  S  L  V  H  Y  Y  L  R  L  A  I  F  L  S  T  I  T  F  W  L  F  L  S  L  H  R  R  P  I  F  V  H  I  I  S  P  F  R  V  F  C  S  S  C  C  F  F  L  F  L  F  V  L  V  L  F  L  L  L  L  C  L  F  F  L  S  L  Q  F  C  F  H  L  C  C  F  N  S  F  N  *  P  L  Q  A  S  I  C  I  F  L  R  R  L  G  H  Q  T  L  S  N  I  S  W  S  Y  I  S  F  P  *  *  T  M  N  L  R  K  V  I  I  M  R  R  N  V  *  I  I  I  S  K  H  L  E  G  L  K  T  T  V  *  *  L  N  V  F  V   </second_frame>
            <third_frame>   E  I  D  I  Y  H  Q  V  T  K  M  *  I  F  C  Y  T  K  R  *  D  T  T  L  C  I  M  Q  Q  P  L  P  T  S  S  *  Y  L  L  N  N  K  I  N  N  V  Q  Q  Q  N  Y  S  K  Y  L  N  P  G  S  M  G  N  T  *  L  I  K  Y  F  H  D  Q  T  L  L  T  L  Y  *  H  H  H  *  S  I  T  I  S  D  L  Q  F  S  L  A  P  S  L  S  G  F  S  L  V  S  I  D  V  P  F  S  F  T  S  S  A  L  F  A  S  S  A  A  A  A  A  S  F  F  F  F  S  F  S  F  S  S  F  S  F  S  A  F  S  S  S  A  F  N  F  A  S  T  F  A  V  S  I  A  L  T  N  L  S  K  Q  V  S  A  F  S  L  E  D  L  G  I  K  L  S  A  T  S  A  G  V  I  L  V  S  P  N  K  R  *  I  S  G  K  *  S  S  *  D  V  T  S  R  *  L  L  A  S  T  L  K  D  S  K  Q  Q  Y  D  S  S  M  C  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48813" stop="48478"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITISDLQFSLAPSLSGFSLVSIDVPFSFTSSALFASSAAAAASFFFFSFSFSSFSFSAFSSSAFNFASTFAVSIALTNLSKQVSAFSLEDLGIKLSATSAGVILVSPNKR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48850" stop="48578"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNFTNPLLTSSLVHYYLRLAIFLSTITFWLFLSLHRRPIFVHIISPFRVFCSSCCFFLFLFVLVLFLLLLCLFFLSLQFCFHLCCFNSFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="54561" PGL_stop="55045"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54561" e_stop="55045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54561" e_stop="55045" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54561" stop="55045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599411" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATCTTTATTTCATTACGAATCTCAGATGTATTGGTCTGGTAAACAGGTCGCTCTCCCAGTGAACCGGAACTGGAGAAATTAGTTCAAGAAGTGGAGAAGTATACTCTTGCCAGTCATCTTTTTTGGGGTCTATGGGGAATAATATCGGTACTTCTCCTGACCTTATATATTCTGTCATGATAAGAGTAGTTATGAGCTGCGTACACAAAAAGAACAGTGAATAGTCTAAGTAGGAACTTGGAACTACCTAGTCTTTAACTGTAGAAAACTTTATATTGAAAGTCCGTCAACAATTAATAGATACATGGTTTGCCGCATTTTGTGCCCAAGCCATAACAGATTTGGCTCTTTTTCTACCTTTTTTGCCTTCGACAACAATGTTGTTATTGAGCTGCATAGGCCTTTCTTAACATCCTTCATTTCCTCCCCTTTTTCAGCATCATGTCAATAAGATAGACTTCGATTACTTGGGGTATGCTAGGC</gDNA_template>
            <first_frame> L  S  L  F  H  Y  E  S  Q  M  Y  W  S  G  K  Q  V  A  L  P  V  N  R  N  W  R  N  *  F  K  K  W  R  S  I  L  L  P  V  I  F  F  G  V  Y  G  E  *  Y  R  Y  F  S  *  P  Y  I  F  C  H  D  K  S  S  Y  E  L  R  T  Q  K  E  Q  *  I  V  *  V  G  T  W  N  Y  L  V  F  N  C  R  K  L  Y  I  E  S  P  S  T  I  N  R  Y  M  V  C  R  I  L  C  P  S  H  N  R  F  G  S  F  S  T  F  F  A  F  D  N  N  V  V  I  E  L  H  R  P  F  L  T  S  F  I  S  S  P  F  S  A  S  C  Q  *  D  R  L  R  L  L  G  V  C  *   </first_frame>
            <second_frame>  Y  L  Y  F  I  T  N  L  R  C  I  G  L  V  N  R  S  L  S  Q  *  T  G  T  G  E  I  S  S  R  S  G  E  V  Y  S  C  Q  S  S  F  L  G  S  M  G  N  N  I  G  T  S  P  D  L  I  Y  S  V  M  I  R  V  V  M  S  C  V  H  K  K  N  S  E  *  S  K  *  E  L  G  T  T  *  S  L  T  V  E  N  F  I  L  K  V  R  Q  Q  L  I  D  T  W  F  A  A  F  C  A  Q  A  I  T  D  L  A  L  F  L  P  F  L  P  S  T  T  M  L  L  L  S  C  I  G  L  S  *  H  P  S  F  P  P  L  F  Q  H  H  V  N  K  I  D  F  D  Y  L  G  Y  A  R  </second_frame>
            <third_frame>   I  F  I  S  L  R  I  S  D  V  L  V  W  *  T  G  R  S  P  S  E  P  E  L  E  K  L  V  Q  E  V  E  K  Y  T  L  A  S  H  L  F  W  G  L  W  G  I  I  S  V  L  L  L  T  L  Y  I  L  S  *  *  E  *  L  *  A  A  Y  T  K  R  T  V  N  S  L  S  R  N  L  E  L  P  S  L  *  L  *  K  T  L  Y  *  K  S  V  N  N  *  *  I  H  G  L  P  H  F  V  P  K  P  *  Q  I  W  L  F  F  Y  L  F  C  L  R  Q  Q  C  C  Y  *  A  A  *  A  F  L  N  I  L  H  F  L  P  F  F  S  I  M  S  I  R  *  T  S  I  T  W  G  M  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54792" stop="55013"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGTWNYLVFNCRKLYIESPSTINRYMVCRILCPSHNRFGSFSTFFAFDNNVVIELHRPFLTSFISSPFSASCQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="58847" PGL_stop="57076"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58847" e_stop="58591"/>
            <exon e_start="58484" e_stop="58381"/>
            <exon e_start="57887" e_stop="57687"/>
            <exon e_start="57309" e_stop="57076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.749" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58847" e_stop="58591" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58590" i_stop="58485" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58484" e_stop="58381" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58380" i_stop="57888" i_length="493"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57887" e_stop="57687" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.749">
            <gDNA_intron_boundary i_start="57686" i_stop="57310" i_length="377"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="57309" e_stop="57076" e_length="234"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58847" stop="58591"/>
              <exon start="58484" stop="58381"/>
              <exon start="57887" stop="57687"/>
              <exon start="57309" stop="57076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGCAGTGCAGCTCATGCTCTGATGATGCAACCACCTCGTATGCTTCGAATCACAGTAGTGGCAAGAAGTTATTTGGGGTTGATCTTTCCAGGGGTTCTCCTAGTGTTCAACAAAACGGAACATTTGACTCAGAAATAGATCCCCTGAGCACCAAGGTTTCAGAACGAACGCTTTTGTACCATGTTGACCCTCTAAAGTTAGGGTCAATCGCCTCAGGAAAGCTTTGGTGCAGTAAGCAGGCAATATTCCCCATAG : GATTTAGAAGTCGTGTTAAGTTCTTCGATGCCAGCAGTCCTGAGATAACTAGTAGCTATATATGCGAGATCCTGAATGGTGGGCTCATTGGACCTCTATTCAAG : GTTAGCTTAGAAGAGTGTCCAGATACGAACTTAGTGAGTTCATCAGCGCAGAAATGCTGGGAAATGATCTCGCATAGAGTCTTTGAAGAACTAGCAACGAAGTTAAATCCAGGAAGGCAAGATTTGCCACCATTGCAACCTGACACAGAATGCATCAACGGTCTCGGAATGTTTGGGTTACTCTCCCCACCGATAGTTCAG : TCCATTGAAGCTCTTGATACAAACTATCAATGTCTGGAGTACTGGAAAAACAAGCTAAAACTCAAGGACGAGTGTGTAACTGTCAAAGGGCCTTCAGGTTCATCGGAGAGTACTGTTGACATGGCAAGATCTGCTGTGATGGAAAGAGGTCAGTGTTCGGGAACCAAGGTGGCTACTGAGGAGGAACATGCTAACTATAGTTCATCTAACACCGAGTTACAATTAGTACTTAGG</gDNA_template>
            <first_frame> E  A  V  Q  L  M  L  *  *  C  N  H  L  V  C  F  E  S  Q  *  W  Q  E  V  I  W  G  *  S  F  Q  G  F  S  *  C  S  T  K  R  N  I  *  L  R  N  R  S  P  E  H  Q  G  F  R  T  N  A  F  V  P  C  *  P  S  K  V  R  V  N  R  L  R  K  A  L  V  Q  *  A  G  N  I  P  H  R :   I  *  K  S  C  *  V  L  R  C  Q  Q  S  *  D  N  *  *  L  Y  M  R  D  P  E  W  W  A  H  W  T  S  I  Q   : G  *  L  R  R  V  S  R  Y  E  L  S  E  F  I  S  A  E  M  L  G  N  D  L  A  *  S  L  *  R  T  S  N  E  V  K  S  R  K  A  R  F  A  T  I  A  T  *  H  R  M  H  Q  R  S  R  N  V  W  V  T  L  P  T  D  S  S   : V  H  *  S  S  *  Y  K  L  S  M  S  G  V  L  E  K  Q  A  K  T  Q  G  R  V  C  N  C  Q  R  A  F  R  F  I  G  E  Y  C  *  H  G  K  I  C  C  D  G  K  R  S  V  F  G  N  Q  G  G  Y  *  G  G  T  C  *  L  *  F  I  *  H  R  V  T  I  S  T  *  </first_frame>
            <second_frame>  K  Q  C  S  S  C  S  D  D  A  T  T  S  Y  A  S  N  H  S  S  G  K  K  L  F  G  V  D  L  S  R  G  S  P  S  V  Q  Q  N  G  T  F  D  S  E  I  D  P  L  S  T  K  V  S  E  R  T  L  L  Y  H  V  D  P  L  K  L  G  S  I  A  S  G  K  L  W  C  S  K  Q  A  I  F  P  I   : G  F  R  S  R  V  K  F  F  D  A  S  S  P  E  I  T  S  S  Y  I  C  E  I  L  N  G  G  L  I  G  P  L  F  K  :  V  S  L  E  E  C  P  D  T  N  L  V  S  S  S  A  Q  K  C  W  E  M  I  S  H  R  V  F  E  E  L  A  T  K  L  N  P  G  R  Q  D  L  P  P  L  Q  P  D  T  E  C  I  N  G  L  G  M  F  G  L  L  S  P  P  I  V  Q  :  S  I  E  A  L  D  T  N  Y  Q  C  L  E  Y  W  K  N  K  L  K  L  K  D  E  C  V  T  V  K  G  P  S  G  S  S  E  S  T  V  D  M  A  R  S  A  V  M  E  R  G  Q  C  S  G  T  K  V  A  T  E  E  E  H  A  N  Y  S  S  S  N  T  E  L  Q  L  V  L  R </second_frame>
            <third_frame>   S  S  A  A  H  A  L  M  M  Q  P  P  R  M  L  R  I  T  V  V  A  R  S  Y  L  G  L  I  F  P  G  V  L  L  V  F  N  K  T  E  H  L  T  Q  K  *  I  P  *  A  P  R  F  Q  N  E  R  F  C  T  M  L  T  L  *  S  *  G  Q  S  P  Q  E  S  F  G  A  V  S  R  Q  Y  S  P  *  :  D  L  E  V  V  L  S  S  S  M  P  A  V  L  R  *  L  V  A  I  Y  A  R  S  *  M  V  G  S  L  D  L  Y  S  R :   L  A  *  K  S  V  Q  I  R  T  *  *  V  H  Q  R  R  N  A  G  K  *  S  R  I  E  S  L  K  N  *  Q  R  S  *  I  Q  E  G  K  I  C  H  H  C  N  L  T  Q  N  A  S  T  V  S  E  C  L  G  Y  S  P  H  R  *  F  S :   P  L  K  L  L  I  Q  T  I  N  V  W  S  T  G  K  T  S  *  N  S  R  T  S  V  *  L  S  K  G  L  Q  V  H  R  R  V  L  L  T  W  Q  D  L  L  *  W  K  E  V  S  V  R  E  P  R  W  L  L  R  R  N  M  L  T  I  V  H  L  T  P  S  Y  N  *  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58846" stop="58591"/>
                    <exon start="58484" stop="58381"/>
                    <exon start="57887" stop="57687"/>
                    <exon start="57309" stop="57076"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQCSSCSDDATTSYASNHSSGKKLFGVDLSRGSPSVQQNGTFDSEIDPLSTKVSERTLLYHVDPLKLGSIASGKLWCSKQAIFPIGFRSRVKFFDASSPEITSSYICEILNGGLIGPLFKVSLEECPDTNLVSSSAQKCWEMISHRVFEELATKLNPGRQDLPPLQPDTECINGLGMFGLLSPPIVQSIEALDTNYQCLEYWKNKLKLKDECVTVKGPSGSSESTVDMARSAVMERGQCSGTKVATEEEHANYSSSNTELQLVLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="78245" PGL_stop="72787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78245" e_stop="78009"/>
            <exon e_start="77298" e_stop="77220"/>
            <exon e_start="77056" e_stop="76943"/>
            <exon e_start="76574" e_stop="76464"/>
            <exon e_start="75083" e_stop="74971"/>
            <exon e_start="73652" e_stop="73575"/>
            <exon e_start="73481" e_stop="73410"/>
            <exon e_start="73303" e_stop="72787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.664" acc_prob="0.946" e_score="0.978"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.402" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.740" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="78245" e_stop="78009" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.664" acc_prob="0.946">
            <gDNA_intron_boundary i_start="78008" i_stop="77299" i_length="710"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77298" e_stop="77220" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77219" i_stop="77057" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77056" e_stop="76943" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="76942" i_stop="76575" i_length="368"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76574" e_stop="76464" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75083" e_stop="74971" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.402" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73652" e_stop="73575" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73481" e_stop="73410" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.740">
            <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="73303" e_stop="72787" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78245" stop="78009"/>
              <exon start="77298" stop="77220"/>
              <exon start="77056" stop="76943"/>
              <exon start="76574" stop="76464"/>
              <exon start="75083" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="72787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78233" stop="78009"/>
              <exon start="77298" stop="77220"/>
              <exon start="77056" stop="76943"/>
              <exon start="76574" stop="76464"/>
              <exon start="75083" stop="75059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATATTTTTTTTTTTTCGTGTGTGGGGATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTG : GAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAG : ATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG : GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG : GTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT : GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACT : GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG : GTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTATGCCCAAAGTCATAAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACTGTATACCGTGAACCTTACTGCCTAAACACCTTGCTTTTGAGAGGCGAATTCAGGATCTAGAGACTAGAGTTAGTGAGCTTTGAATGAGTGCGGTTTTTATTAGATGTATGCATCTTTTCCCTTGTGCATGTGTGTAATGGCACCTGCAGACTTGTCTGGAA</gDNA_template>
            <first_frame> P  I  F  N  K  K  K  K  G  D  V  R  K  I  S  K  N  Q  S  F  E  I  L  N  L  P  N  F  C  R  N  F  R  S  D  F  H  L  N  S  N  P  F  S  D  N  L  K  Y  P  S  L  Y  I  F  F  F  S  C  V  G  I  Y  I  L  *  *  R  G  T  L  S  S  R  F  V  H  *  L  :  E  E  *  I  Y  L  T  D  R  Q  K  L  A  L  L  P  Q  T  T  R  Y  S  N  R  L  K   : D  M  Q  S  Q  L  M  C  S  G  C  R  T  M  L  L  Y  P  R  G  A  S  N  V  C  C  A  V  C  N  A  L  T  P  V  P  P  P   : G  M  E  M  A  Q  L  I  C  G  G  C  R  T  L  L  M  H  P  R  G  A  N  S  V  R  C  S  C  C  H  T  V  N  L  V  P   : G  P  N  Q  F  A  H  V  Y  C  G  N  C  R  M  M  L  M  Y  P  C  G  A  P  S  V  K  C  A  V  C  H  Y  I  T  N  V  N  :  A  G  D  G  R  A  H  A  P  L  N  P  P  N  G  T  A  T  T  A  S  G  S  S  S  T  :  A  K  A  R  S  Q  N  Q  T  V  V  V  Q  N  P  M  S  V  D  E  S  G  K  L  :  V  S  N  V  V  V  G  V  T  T  T  S  *  L  V  C  *  T  C  C  S  W  T  T  I  E  S  F  A  R  N  N  W  K  E  E  N  K  D  S  R  C  I  *  I  W  *  C  L  V  L  I  L  Q  P  Y  P  C  F  S  F  V  N  I  L  I  L  *  L  W  G  D  *  S  Y  Y  Y  *  C  C  D  Y  L  E  S  V  I  D  N  Y  A  L  D  L  W  R  A  M  P  K  V  I  S  E  E  C  Y  Y  V  P  Y  M  P  Y  Y  C  I  *  L  Y  T  V  N  L  T  A  *  T  P  C  F  *  E  A  N  S  G  S  R  D  *  S  *  *  A  L  N  E  C  G  F  Y  *  M  Y  A  S  F  P  L  C  M  C  V  M  A  P  A  D  L  S  G  </first_frame>
            <second_frame>  Q  Y  L  T  R  R  K  K  E  M  *  E  K  Y  P  K  T  N  L  L  K  S  *  I  Y  P  I  S  V  G  I  F  A  Q  I  S  I  *  I  P  T  H  F  Q  I  I  S  S  T  L  H  C  I  F  F  F  F  R  V  W  G  Y  I  Y  Y  N  R  G  V  P  Y  L  P  D  L  F  I  D  W :   K  N  K  F  T  S  Q  I  G  R  N  *  L  F  Y  L  R  R  L  D  I  Q  T  D  *  K  :  I  C  R  V  S  *  C  A  V  G  A  G  Q  C  F  F  I  P  E  E  L  L  M  S  A  V  Q  C  A  M  H  S  P  L  S  H  H  L  :  E  W  K  W  L  N  *  Y  V  E  A  V  V  H  Y  L  C  I  H  V  E  R  T  V  *  D  A  P  A  V  I  R  *  T  L  S  Q  :  V  Q  T  S  L  L  M  S  T  A  G  T  A  V  *  C  *  C  I  H  V  E  L  H  R  L  N  V  Q  Y  A  I  I  L  P  M  L  M :   Q  E  M  E  E  P  M  H  L  *  T  L  L  T  A  L  L  L  L  L  Q  D  P  L  Q  L :   P  R  L  V  H  K  I  K  L  L  S  S  K  T  Q  C  L  S  M  R  V  A  S  W :   *  V  M  *  L  L  V  *  Q  Q  H  H  S  S  S  A  K  L  A  V  R  G  Q  Q  L  R  V  L  L  A  T  I  G  K  R  R  I  K  T  A  A  A  Y  K  Y  G  S  V  *  C  *  Y  Y  N  H  T  P  V  F  L  L  L  T  F  *  Y  Y  D  C  G  V  I  E  A  T  T  T  S  V  V  T  I  W  S  L  *  L  I  T  T  R  *  I  C  G  V  L  C  P  K  S  *  V  K  N  V  I  M  Y  L  I  C  H  I  I  V  Y  D  C  I  P  *  T  L  L  P  K  H  L  A  F  E  R  R  I  Q  D  L  E  T  R  V  S  E  L  *  M  S  A  V  F  I  R  C  M  H  L  F  P  C  A  C  V  *  W  H  L  Q  T  C  L  E </second_frame>
            <third_frame>   N  I  *  Q  E  E  K  R  R  C  K  K  N  I  Q  K  P  I  F  *  N  L  E  F  T  Q  F  L  S  E  F  S  L  R  F  P  F  E  F  Q  P  I  F  R  *  S  Q  V  P  F  T  V  Y  F  F  F  F  V  C  G  D  I  Y  I  I  I  E  G  Y  P  I  F  Q  I  C  S  L  T   : G  R  I  N  L  P  H  R  S  A  E  I  S  S  S  T  S  D  D  S  I  F  K  Q  I  E  R :   Y  A  E  S  V  D  V  Q  W  V  Q  D  N  A  S  L  S  Q  R  S  F  *  C  L  L  C  S  V  Q  C  T  H  P  C  P  T  T  W :   N  G  N  G  S  I  D  M  W  R  L  S  Y  I  T  Y  A  S  T  W  S  E  Q  C  E  M  L  L  L  S  Y  G  E  P  C  P  R :   S  K  P  V  C  S  C  L  L  R  E  L  P  Y  D  A  D  V  S  M  W  S  S  I  G  *  M  C  S  M  P  L  Y  Y  Q  C  *   : C  R  R  W  K  S  P  C  T  F  E  P  S  *  R  H  C  Y  Y  C  F  R  I  L  F  N   : C  Q  G  S  F  T  K  S  N  C  C  R  P  K  P  N  V  C  R  *  E  W  Q  V   : G  E  *  C  S  C  W  C  N  N  N  I  I  A  R  L  L  N  L  L  F  V  D  N  N  *  E  F  C  S  Q  Q  L  E  R  G  E  *  R  Q  P  L  H  I  N  M  V  V  F  S  V  N  T  T  T  I  P  L  F  F  F  C  *  H  F  D  I  M  I  V  G  *  L  K  L  L  L  L  V  L  *  L  F  G  V  C  N  *  *  L  R  V  R  F  V  A  C  Y  A  Q  S  H  K  *  R  M  L  L  C  T  L  Y  A  I  L  L  Y  M  T  V  Y  R  E  P  Y  C  L  N  T  L  L  L  R  G  E  F  R  I  *  R  L  E  L  V  S  F  E  *  V  R  F  L  L  D  V  C  I  F  S  L  V  H  V  C  N  G  T  C  R  L  V  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77289" stop="77220"/>
                    <exon start="77056" stop="76943"/>
                    <exon start="76574" stop="76464"/>
                    <exon start="75083" stop="74971"/>
                    <exon start="73652" stop="73575"/>
                    <exon start="73481" stop="73410"/>
                    <exon start="73303" stop="73265"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLTDRQKLALLPQTTRYSNRLKDMQSQLMCSGCRTMLLYPRGASNVCCAVCNALTPVPPPGMEMAQLICGGCRTLLMHPRGANSVRCSCCHTVNLVPGPNQFAHVYCGNCRMMLMYPCGAPSVKCAVCHYITNVNAGDGRAHAPLNPPNGTATTASGSSSTAKARSQNQTVVVQNPMSVDESGKLVSNVVVGVTTTS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78245" stop="78048"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIFNKKKKGDVRKISKNQSFEILNLPNFCRNFRSDFHLNSNPFSDNLKYPSLYIFFFSCVGIYIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="91551" PGL_stop="92222"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91551" e_stop="92222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="91551" e_stop="92222" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91551" stop="92222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATGGCATAAGGTCTAGAAAATTTTGAATACAAGGCCTCTCATTTACACAAGAAAGGCTTATGGCTTCTTCAATCTCTATGAATATTCTTTTTTCATTCATATTACTATTTTCAGCTTCATGTGTTGTTTCATATACAATTCAAGATCAATTCTACCAATGTATTACACTCTATTCGGATCGTTCGATCCCTTTCTCCACAGCTTTCTTCACTCCTACTTCCAATGCTACTTCATTCAACTCTGTCCTTAAATCCACTGCCCAAAATCTAAGGTGTTTATCACCTTCTCAACAAAAACCTCTGCTTATTTTCACTGCTTTGATTGAATCTCATGTTCAAGCAGCAGTTATTTGCGCGAAAGAGCTAAAAGTTCAGCTCAGAGTTAGGAGTGGAGGTCATGATTATGAAGGCATATCTTATACATCAGAAATGAAAAGATCAGTGCCTTTTATCATGCTTGACTTAGCTAAGCTTCGTGCGATTAAAGTGGACATTGAGGACAACAGTGCATGGGTTCAAGCTGGTGCGACGATTGGTGAAGTGTACTATAGGATTGCAGAAAAAAGCAAGACACATGGTTACCCTGCTGGCCTATGTACCAGCTTAGGAATTGGTGGTCATATTACTGGAGGAGCTTATGGTCCTATGATGAGGAAATATGGTCTTGGAGC</gDNA_template>
            <first_frame> T  W  H  K  V  *  K  I  L  N  T  R  P  L  I  Y  T  R  K  A  Y  G  F  F  N  L  Y  E  Y  S  F  F  I  H  I  T  I  F  S  F  M  C  C  F  I  Y  N  S  R  S  I  L  P  M  Y  Y  T  L  F  G  S  F  D  P  F  L  H  S  F  L  H  S  Y  F  Q  C  Y  F  I  Q  L  C  P  *  I  H  C  P  K  S  K  V  F  I  T  F  S  T  K  T  S  A  Y  F  H  C  F  D  *  I  S  C  S  S  S  S  Y  L  R  E  R  A  K  S  S  A  Q  S  *  E  W  R  S  *  L  *  R  H  I  L  Y  I  R  N  E  K  I  S  A  F  Y  H  A  *  L  S  *  A  S  C  D  *  S  G  H  *  G  Q  Q  C  M  G  S  S  W  C  D  D  W  *  S  V  L  *  D  C  R  K  K  Q  D  T  W  L  P  C  W  P  M  Y  Q  L  R  N  W  W  S  Y  Y  W  R  S  L  W  S  Y  D  E  E  I  W  S  W  S </first_frame>
            <second_frame>  H  G  I  R  S  R  K  F  *  I  Q  G  L  S  F  T  Q  E  R  L  M  A  S  S  I  S  M  N  I  L  F  S  F  I  L  L  F  S  A  S  C  V  V  S  Y  T  I  Q  D  Q  F  Y  Q  C  I  T  L  Y  S  D  R  S  I  P  F  S  T  A  F  F  T  P  T  S  N  A  T  S  F  N  S  V  L  K  S  T  A  Q  N  L  R  C  L  S  P  S  Q  Q  K  P  L  L  I  F  T  A  L  I  E  S  H  V  Q  A  A  V  I  C  A  K  E  L  K  V  Q  L  R  V  R  S  G  G  H  D  Y  E  G  I  S  Y  T  S  E  M  K  R  S  V  P  F  I  M  L  D  L  A  K  L  R  A  I  K  V  D  I  E  D  N  S  A  W  V  Q  A  G  A  T  I  G  E  V  Y  Y  R  I  A  E  K  S  K  T  H  G  Y  P  A  G  L  C  T  S  L  G  I  G  G  H  I  T  G  G  A  Y  G  P  M  M  R  K  Y  G  L  G   </second_frame>
            <third_frame>   M  A  *  G  L  E  N  F  E  Y  K  A  S  H  L  H  K  K  G  L  W  L  L  Q  S  L  *  I  F  F  F  H  S  Y  Y  Y  F  Q  L  H  V  L  F  H  I  Q  F  K  I  N  S  T  N  V  L  H  S  I  R  I  V  R  S  L  S  P  Q  L  S  S  L  L  L  P  M  L  L  H  S  T  L  S  L  N  P  L  P  K  I  *  G  V  Y  H  L  L  N  K  N  L  C  L  F  S  L  L  *  L  N  L  M  F  K  Q  Q  L  F  A  R  K  S  *  K  F  S  S  E  L  G  V  E  V  M  I  M  K  A  Y  L  I  H  Q  K  *  K  D  Q  C  L  L  S  C  L  T  *  L  S  F  V  R  L  K  W  T  L  R  T  T  V  H  G  F  K  L  V  R  R  L  V  K  C  T  I  G  L  Q  K  K  A  R  H  M  V  T  L  L  A  Y  V  P  A  *  E  L  V  V  I  L  L  E  E  L  M  V  L  *  *  G  N  M  V  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91579" stop="92220"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQGLSFTQERLMASSISMNILFSFILLFSASCVVSYTIQDQFYQCITLYSDRSIPFSTAFFTPTSNATSFNSVLKSTAQNLRCLSPSQQKPLLIFTALIESHVQAAVICAKELKVQLRVRSGGHDYEGISYTSEMKRSVPFIMLDLAKLRAIKVDIEDNSAWVQAGATIGEVYYRIAEKSKTHGYPAGLCTSLGIGGHITGGAYGPMMRKYGLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="98068" PGL_stop="93470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98068" e_stop="97871"/>
            <exon e_start="97779" e_stop="97735"/>
            <exon e_start="96284" e_stop="96250"/>
            <exon e_start="96069" e_stop="96019"/>
            <exon e_start="95136" e_stop="95032"/>
            <exon e_start="94942" e_stop="94871"/>
            <exon e_start="94714" e_stop="94643"/>
            <exon e_start="94480" e_stop="94400"/>
            <exon e_start="94315" e_stop="94280"/>
            <exon e_start="94181" e_stop="94120"/>
            <exon e_start="93760" e_stop="93470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.919"/>
          <exon-intron don_prob="0.980" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="0.961"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="0.380" acc_prob="0.999" e_score="0.972"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.952"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="98068" e_stop="97871" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97870" i_stop="97780" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97779" e_stop="97735" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.982">
            <gDNA_intron_boundary i_start="97734" i_stop="96285" i_length="1450"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="96284" e_stop="96250" e_length="35"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96249" i_stop="96070" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="96069" e_stop="96019" e_length="51"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="96018" i_stop="95137" i_length="882"/>
          </intron>
          <exon e_serial="5" e_score="0.971">
            <gDNA_exon_boundary e_start="95136" e_stop="95032" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95031" i_stop="94943" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94942" e_stop="94871" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="94870" i_stop="94715" i_length="156"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="94714" e_stop="94643" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.737">
            <gDNA_intron_boundary i_start="94642" i_stop="94481" i_length="162"/>
          </intron>
          <exon e_serial="8" e_score="0.988">
            <gDNA_exon_boundary e_start="94480" e_stop="94400" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94399" i_stop="94316" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="0.972">
            <gDNA_exon_boundary e_start="94315" e_stop="94280" e_length="36"/>
          </exon>
          <intron i_serial="9" don_prob="0.380" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94279" i_stop="94182" i_length="98"/>
          </intron>
          <exon e_serial="10" e_score="0.952">
            <gDNA_exon_boundary e_start="94181" e_stop="94120" e_length="62"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94119" i_stop="93761" i_length="359"/>
          </intron>
          <exon e_serial="11" e_score="0.990">
            <gDNA_exon_boundary e_start="93760" e_stop="93470" e_length="291"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98068" stop="97871"/>
              <exon start="97779" stop="97735"/>
              <exon start="96284" stop="96250"/>
              <exon start="96069" stop="96019"/>
              <exon start="95136" stop="95032"/>
              <exon start="94942" stop="94871"/>
              <exon start="94714" stop="94643"/>
              <exon start="94480" stop="94400"/>
              <exon start="94315" stop="94280"/>
              <exon start="94181" stop="94120"/>
              <exon start="93760" stop="93470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCACAAAAATTCCAAAAAACAAAGGGAAAAAAACCCCATTTTTAATCACCCATTTTCATGATTCAGCTTTTCTTCAAAAGCCATTAGGGTTTTTTTCCTCTTCCATTTCAAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCAAAAG : AAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAG : GCATCGAACGGGAGATCTCATCCTTACAAATGGAG : GAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACAGGAAACGAG : GCAGCCACCAAAATTCTAGCTCGTCAACTTGTGAGGTTACGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAG : GCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAG : CAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACA : ATTGAGATGATGTCTGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAG : GTGCTTGACGAGATTGGTGTGGACATTGCATCACAG : TTATCTTCAGCTCCAAAAGGCCGGATTGCATCGAAGAAAGTTGAAAATGTTGCCCCCCCTAG : TTCTGATACTGCTGCAGATGTCGAGGAACTTGAGAAGAGGTTGGCCTCTCTTCGAAGAATTTGATGAAGAACGTGGACAACTTTTATATGATCCTTGTACAAATTTCGCTTTTAGAATTAAAAATATAGTATGTATTATGGTACCAATTTGTATTTCTCAACTATAATCCTATAGCACCAAACATGACATTTATGCTGTAAGAATGAAGTGGATCCTTTTTGGGTTTTATGATCCTTCTCCATGTAAGTTTTGTATGTAGTTCCTTGAATTCATTGATATACCTTACCCTC</gDNA_template>
            <first_frame> F  L  T  K  I  P  K  N  K  G  K  K  T  P  F  L  I  T  H  F  H  D  S  A  F  L  Q  K  P  L  G  F  F  S  S  S  I  S  R  K  F  *  G  S  R  I  I  N  K  R  R  W  R  S  *  T  A  F  S  R  R  R  L  H  Q  K  :  K  H  *  G  P  A  K  G  K  W  L  L  L  P  E  :  A  S  N  G  R  S  H  P  Y  K  W  R :   R  K  S  *  L  Q  R  S  S  K  Q  P  K  Q  E  T  R :   Q  P  P  K  F  *  L  V  N  L  *  G  Y  G  N  K  L  S  I  C  K  V  V  V  L  K  L  G  V  *  Q  L  I  H  R :   H  Y  M  L  A  P  L  C  L  L  E  *  K  V  Q  L  K  R  C  L  P  *  T  S :   K  W  H  L  Q  N  K  L  K  *  S  E  N  S  R  S  S  H  H  S  W  T  *  Q :   L  R  *  C  L  N  P  L  M  R  L  W  I  K  M  K  L  K  K  K  L  R  S  L  Q  T  R :   C  L  T  R  L  V  W  T  L  H  H  S :   Y  L  Q  L  Q  K  A  G  L  H  R  R  K  L  K  M  L  P  P  L   : V  L  I  L  L  Q  M  S  R  N  L  R  R  G  W  P  L  F  E  E  F  D  E  E  R  G  Q  L  L  Y  D  P  C  T  N  F  A  F  R  I  K  N  I  V  C  I  M  V  P  I  C  I  S  Q  L  *  S  Y  S  T  K  H  D  I  Y  A  V  R  M  K  W  I  L  F  G  F  Y  D  P  S  P  C  K  F  C  M  *  F  L  E  F  I  D  I  P  Y  P  </first_frame>
            <second_frame>  F  S  Q  K  F  Q  K  T  K  G  K  K  P  H  F  *  S  P  I  F  M  I  Q  L  F  F  K  S  H  *  G  F  F  P  L  P  F  Q  E  N  S  R  V  Q  E  S  L  T  K  E  D  G  E  V  E  Q  H  F  Q  E  E  D  F  T  K  R :   S  I  E  D  Q  Q  K  G  N  G  C  C  Y  Q  R :   H  R  T  G  D  L  I  L  T  N  G   : G  E  K  V  S  C  R  D  Q  A  N  S  Q  N  R  K  R   : G  S  H  Q  N  S  S  S  S  T  C  E  V  T  A  T  N  C  Q  F  A  R  *  S  C  S  N  *  G  C  S  N  S  Y  T   : G  T  I  C  *  H  L  Y  V  Y  W  N  E  R  C  N  *  S  D  V  C  H  E  Q   : A  N  G  T  C  K  T  S  *  S  D  Q  R  I  P  E  A  V  I  T  V  G  H  D   : N  *  D  D  V  *  I  H  *  *  D  F  G  *  R  *  S  *  R  R  N  *  G  A  Y  K  P   : G  A  *  R  D  W  C  G  H  C  I  T   : V  I  F  S  S  K  R  P  D  C  I  E  E  S  *  K  C  C  P  P  *  :  F  *  Y  C  C  R  C  R  G  T  *  E  E  V  G  L  S  S  K  N  L  M  K  N  V  D  N  F  Y  M  I  L  V  Q  I  S  L  L  E  L  K  I  *  Y  V  L  W  Y  Q  F  V  F  L  N  Y  N  P  I  A  P  N  M  T  F  M  L  *  E  *  S  G  S  F  L  G  F  M  I  L  L  H  V  S  F  V  C  S  S  L  N  S  L  I  Y  L  T  L </second_frame>
            <third_frame>   S  H  K  N  S  K  K  Q  R  E  K  N  P  I  F  N  H  P  F  S  *  F  S  F  S  S  K  A  I  R  V  F  F  L  F  H  F  K  K  I  L  G  F  K  N  H  *  Q  K  K  M  E  K  L  N  S  I  F  K  K  K  T  S  P  K   : E  A  L  R  T  S  K  R  E  M  A  V  A  T  R   : G  I  E  R  E  I  S  S  L  Q  M  E  :  E  K  K  L  V  A  E  I  K  Q  T  A  K  T  G  N  E  :  A  A  T  K  I  L  A  R  Q  L  V  R  L  R  Q  Q  I  V  N  L  Q  G  S  R  A  Q  I  R  G  V  A  T  H  T  Q  :  A  L  Y  A  S  T  S  M  S  T  G  M  K  G  A  T  K  A  M  S  A  M  N  K  :  Q  M  A  P  A  K  Q  V  K  V  I  R  E  F  Q  K  Q  S  S  Q  L  D  M  T  :  I  E  M  M  S  E  S  I  D  E  T  L  D  K  D  E  A  E  E  E  T  E  E  L  T  N  Q  :  V  L  D  E  I  G  V  D  I  A  S  Q  :  L  S  S  A  P  K  G  R  I  A  S  K  K  V  E  N  V  A  P  P  S :   S  D  T  A  A  D  V  E  E  L  E  K  R  L  A  S  L  R  R  I  *  *  R  T  W  T  T  F  I  *  S  L  Y  K  F  R  F  *  N  *  K  Y  S  M  Y  Y  G  T  N  L  Y  F  S  T  I  I  L  *  H  Q  T  *  H  L  C  C  K  N  E  V  D  P  F  W  V  L  *  S  F  S  M  *  V  L  Y  V  V  P  *  I  H  *  Y  T  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97925" stop="97871"/>
                    <exon start="97779" stop="97735"/>
                    <exon start="96284" stop="96250"/>
                    <exon start="96069" stop="96019"/>
                    <exon start="95136" stop="95032"/>
                    <exon start="94942" stop="94871"/>
                    <exon start="94714" stop="94643"/>
                    <exon start="94480" stop="94400"/>
                    <exon start="94315" stop="94280"/>
                    <exon start="94181" stop="94120"/>
                    <exon start="93760" stop="93697"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKKMEKLNSIFKKKTSPKEALRTSKREMAVATRGIEREISSLQMEEKKLVAEIKQTAKTGNEAATKILARQLVRLRQQIVNLQGSRAQIRGVATHTQALYASTSMSTGMKGATKAMSAMNKQMAPAKQVKVIREFQKQSSQLDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRIASKKVENVAPPSSDTAADVEELEKRLASLRRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="99749" PGL_stop="101227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99749" e_stop="100018"/>
            <exon e_start="100811" e_stop="101227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="99749" e_stop="100018" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100019" i_stop="100810" i_length="792"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100811" e_stop="101227" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99749" stop="100018"/>
              <exon start="100811" stop="101227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575693" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAAAAAAAAATAATAAATGAAAGGAATACAATTTCCATCTTTAAACAGAAACACCTTTATAATCTTCTTTTTGATCCATTTATCAATATTTTCACCATATTTTGCCATATCCATTAAACAGAAAGAAGCTCAACAGCAAGTAATTGGCTATGGTTACTCAATCAAATCTGTGGCTATCACTGGAAATTCAATTTTTGCTAATCTTCAACTCATCAGCACTTCTTCTGTTTTTGGTACTGATATTCACAATCTTATCCTCATTGCCAG : TTTGGAAACAAACGATCGTCTCCGAATACGAATAACGGACGTTAACCACCAACGATGGGAAGTGCCGGAAGAAATTCTCCGCCGTCCACCACCGCCATCGCCGCCGTCAACTTCCAACTCCTCATCAGAAAACCACTTCCCAATTACGCTCTCTAACCCAAACTCAGACCTAGAGTTCACCCTTCACAACACCACCCCATTCAGCTTCACCGTCCGCCGGCGATTCACCGGGGATACTCTTTTCGATACTTCGCCGGAGAACGAAAACCCCGATACATTCCTCATATTCAAAGATCAGTACATCCAGATCTCCTCGGCACTACCAACTACCAGAGCTAACCTTTACGGGCTCGGAGAGCACACTAAAAGCTCGTTTAAGCTTACGCACAACCAGACTTTGACTCTATGGAATGCCGA</gDNA_template>
            <first_frame> L  K  K  K  I  I  N  E  R  N  T  I  S  I  F  K  Q  K  H  L  Y  N  L  L  F  D  P  F  I  N  I  F  T  I  F  C  H  I  H  *  T  E  R  S  S  T  A  S  N  W  L  W  L  L  N  Q  I  C  G  Y  H  W  K  F  N  F  C  *  S  S  T  H  Q  H  F  F  C  F  W  Y  *  Y  S  Q  S  Y  P  H  C  Q  :  F  G  N  K  R  S  S  P  N  T  N  N  G  R  *  P  P  T  M  G  S  A  G  R  N  S  P  P  S  T  T  A  I  A  A  V  N  F  Q  L  L  I  R  K  P  L  P  N  Y  A  L  *  P  K  L  R  P  R  V  H  P  S  Q  H  H  P  I  Q  L  H  R  P  P  A  I  H  R  G  Y  S  F  R  Y  F  A  G  E  R  K  P  R  Y  I  P  H  I  Q  R  S  V  H  P  D  L  L  G  T  T  N  Y  Q  S  *  P  L  R  A  R  R  A  H  *  K  L  V  *  A  Y  A  Q  P  D  F  D  S  M  E  C  R </first_frame>
            <second_frame>  *  K  K  K  *  *  M  K  G  I  Q  F  P  S  L  N  R  N  T  F  I  I  F  F  L  I  H  L  S  I  F  S  P  Y  F  A  I  S  I  K  Q  K  E  A  Q  Q  Q  V  I  G  Y  G  Y  S  I  K  S  V  A  I  T  G  N  S  I  F  A  N  L  Q  L  I  S  T  S  S  V  F  G  T  D  I  H  N  L  I  L  I  A  S :   L  E  T  N  D  R  L  R  I  R  I  T  D  V  N  H  Q  R  W  E  V  P  E  E  I  L  R  R  P  P  P  P  S  P  P  S  T  S  N  S  S  S  E  N  H  F  P  I  T  L  S  N  P  N  S  D  L  E  F  T  L  H  N  T  T  P  F  S  F  T  V  R  R  R  F  T  G  D  T  L  F  D  T  S  P  E  N  E  N  P  D  T  F  L  I  F  K  D  Q  Y  I  Q  I  S  S  A  L  P  T  T  R  A  N  L  Y  G  L  G  E  H  T  K  S  S  F  K  L  T  H  N  Q  T  L  T  L  W  N  A   </second_frame>
            <third_frame>   E  K  K  N  N  K  *  K  E  Y  N  F  H  L  *  T  E  T  P  L  *  S  S  F  *  S  I  Y  Q  Y  F  H  H  I  L  P  Y  P  L  N  R  K  K  L  N  S  K  *  L  A  M  V  T  Q  S  N  L  W  L  S  L  E  I  Q  F  L  L  I  F  N  S  S  A  L  L  L  F  L  V  L  I  F  T  I  L  S  S  L  P   : V  W  K  Q  T  I  V  S  E  Y  E  *  R  T  L  T  T  N  D  G  K  C  R  K  K  F  S  A  V  H  H  R  H  R  R  R  Q  L  P  T  P  H  Q  K  T  T  S  Q  L  R  S  L  T  Q  T  Q  T  *  S  S  P  F  T  T  P  P  H  S  A  S  P  S  A  G  D  S  P  G  I  L  F  S  I  L  R  R  R  T  K  T  P  I  H  S  S  Y  S  K  I  S  T  S  R  S  P  R  H  Y  Q  L  P  E  L  T  F  T  G  S  E  S  T  L  K  A  R  L  S  L  R  T  T  R  L  *  L  Y  G  M  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99768" stop="100018"/>
                    <exon start="100811" stop="101225"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKGIQFPSLNRNTFIIFFLIHLSIFSPYFAISIKQKEAQQQVIGYGYSIKSVAITGNSIFANLQLISTSSVFGTDIHNLILIASLETNDRLRIRITDVNHQRWEVPEEILRRPPPPSPPSTSNSSSENHFPITLSNPNSDLEFTLHNTTPFSFTVRRRFTGDTLFDTSPENENPDTFLIFKDQYIQISSALPTTRANLYGLGEHTKSSFKLTHNQTLTLWNA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="102263" PGL_stop="104379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102263" e_stop="102439"/>
            <exon e_start="102559" e_stop="103205"/>
            <exon e_start="103536" e_stop="103858"/>
            <exon e_start="103933" e_stop="104379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102263" e_stop="102439" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102440" i_stop="102558" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102559" e_stop="103205" e_length="647"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.764">
            <gDNA_intron_boundary i_start="103206" i_stop="103535" i_length="330"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103536" e_stop="103858" e_length="323"/>
          </exon>
          <intron i_serial="3" don_prob="0.926" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103859" i_stop="103932" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="103933" e_stop="104379" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102263" stop="102439"/>
              <exon start="102559" stop="103205"/>
              <exon start="103536" stop="103858"/>
              <exon start="103933" stop="104379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAAGTTATGCAAAGGCTAGGATACCGCTGGAGGTTATGTGGACTGATATTGATTACATGGATGGTTTTAAGGACTTCACACTCGATCCAGTTAACTTCCCACTGGAGCGGGTAAATTTTTTTCTCAGGAAGCTTCATCAGAATGATCAGAAATATGTACTAATAGTAGATCCAG : GAATTAGTATCAACAATACATATGACACCTATAGGAGAGGCATGGAAGCAGATGTCTTCATAAAACGCGATAATATGCCCCACCAAGGGGTTGTTTGGCCAGGGAATGTTTACTATCCTGATTTTCTAAATCCAGCTACTGAAGTATTTTGGAGAAATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATTACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCGTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAACTATAGAACAGTTCCAGCCACTTCAACACATTTTGGTAATACAATAGATTATAATGTCCATAACCTTTATGGATTACTAGAATCTAGAGCCACCTATAGTGCTTTGGTTAATGTCACTGGTAAAAGGCCATTCATTCTTGCAAGATCAACTTTTCTTGGCTCTGGCAGATATACGTCACATTGGACTGGAGACAATGCTGCTACATGGAATGATTTGGCATACTCCATTCCTACTATCTTGAACTTTGGATTGTTTGGAATTCCAATGGTTGGAGCTGATATATGTGGTTTTTCAAGTAACACTACTGAAGAGCTTTGCCGCCGCTGGATTCAG : CTTGGAGCATTCTATCCATTTGCAAGAGACCACTCTGCTAAGGACACAACCCCCCAAGAGCTCTATAGTTGGGATTCAGTTGCTGCAGCGGCCAAGAAAGTCCTTGGGCTCCGATATCAGTTACTTCCGTACTTTTATATGCTTATGTACAAGGCACATACAAAAGGGACTCCCATTGCACGACCCCTCTTCTTCTCTTTCCCTCAAGATGCCAAGACATTTGATATCAGCACGCAGTTCCTTCTCGGTAAAGGTGTCATGATCTCACCTGTACTTAAGCAAGGAGCAACCTCTGTTGATGCATATTTCCCTGCTGGAAACTG : ATCATATAAATGTACACGTTCGTGAAGGGAACATATTGGTCATGCAAGGGGAAGCAATGACAACACAAGCTGCACAGAGGACTGCATTCAAACTCCTTGTCGTGCTGAGCAGCAGCGAAAACAGCACAGGAGAACTATTTGTGGACGATGACGATGAGGTGCAGATGGGAAGAGAGGGAGGGAGGTGGACGTTCGTTAAGTTTAACAGCAATATCATTGGCAATAAAATTGTGGTTAAATCAGAGGTTGTGAATGGACGGTACGCGCTGGATCAAGGATTGGTCCTTGAAAAGATGACATTATTAGGTTTGGAAAATGTGAGAGGATTGAAGAGCTATGAGCTTGTTGGATCACACCAGCAAGGGAACACAACAATGAAGGAAAAACTTAAACAGAGTGGACAGTTTGTTGCTATGGAAATCTCAGAGATGTCAATACTGATAGGGA</gDNA_template>
            <first_frame> W  K  V  M  Q  R  L  G  Y  R  W  R  L  C  G  L  I  L  I  T  W  M  V  L  R  T  S  H  S  I  Q  L  T  S  H  W  S  G  *  I  F  F  S  G  S  F  I  R  M  I  R  N  M  Y  *  *  *  I  Q  :  E  L  V  S  T  I  H  M  T  P  I  G  E  A  W  K  Q  M  S  S  *  N  A  I  I  C  P  T  K  G  L  F  G  Q  G  M  F  T  I  L  I  F  *  I  Q  L  L  K  Y  F  G  E  M  K  L  R  S  S  R  I  S  Y  L  L  M  A  C  G  L  T  *  M  N  C  Q  T  S  L  L  P  L  L  H  H  H  P  P  L  M  T  L  R  T  R  *  T  T  L  A  I  T  C  P  S  T  I  E  Q  F  Q  P  L  Q  H  I  L  V  I  Q  *  I  I  M  S  I  T  F  M  D  Y  *  N  L  E  P  P  I  V  L  W  L  M  S  L  V  K  G  H  S  F  L  Q  D  Q  L  F  L  A  L  A  D  I  R  H  I  G  L  E  T  M  L  L  H  G  M  I  W  H  T  P  F  L  L  S  *  T  L  D  C  L  E  F  Q  W  L  E  L  I  Y  V  V  F  Q  V  T  L  L  K  S  F  A  A  A  G  F  S :   L  E  H  S  I  H  L  Q  E  T  T  L  L  R  T  Q  P  P  K  S  S  I  V  G  I  Q  L  L  Q  R  P  R  K  S  L  G  S  D  I  S  Y  F  R  T  F  I  C  L  C  T  R  H  I  Q  K  G  L  P  L  H  D  P  S  S  S  L  S  L  K  M  P  R  H  L  I  S  A  R  S  S  F  S  V  K  V  S  *  S  H  L  Y  L  S  K  E  Q  P  L  L  M  H  I  S  L  L  E  T   : D  H  I  N  V  H  V  R  E  G  N  I  L  V  M  Q  G  E  A  M  T  T  Q  A  A  Q  R  T  A  F  K  L  L  V  V  L  S  S  S  E  N  S  T  G  E  L  F  V  D  D  D  D  E  V  Q  M  G  R  E  G  G  R  W  T  F  V  K  F  N  S  N  I  I  G  N  K  I  V  V  K  S  E  V  V  N  G  R  Y  A  L  D  Q  G  L  V  L  E  K  M  T  L  L  G  L  E  N  V  R  G  L  K  S  Y  E  L  V  G  S  H  Q  Q  G  N  T  T  M  K  E  K  L  K  Q  S  G  Q  F  V  A  M  E  I  S  E  M  S  I  L  I  G  </first_frame>
            <second_frame>  G  K  L  C  K  G  *  D  T  A  G  G  Y  V  D  *  Y  *  L  H  G  W  F  *  G  L  H  T  R  S  S  *  L  P  T  G  A  G  K  F  F  S  Q  E  A  S  S  E  *  S  E  I  C  T  N  S  R  S  R :   N  *  Y  Q  Q  Y  I  *  H  L  *  E  R  H  G  S  R  C  L  H  K  T  R  *  Y  A  P  P  R  G  C  L  A  R  E  C  L  L  S  *  F  S  K  S  S  Y  *  S  I  L  E  K  *  N  *  E  V  P  G  S  R  T  F  *  W  P  V  A  *  H  E  *  I  V  K  L  H  Y  F  P  S  Y  T  I  I  H  L  *  *  P  S  V  Q  D  K  Q  L  W  R  S  L  A  H  Q  L  *  N  S  S  S  H  F  N  T  F  W  *  Y  N  R  L  *  C  P  *  P  L  W  I  T  R  I  *  S  H  L  *  C  F  G  *  C  H  W  *  K  A  I  H  S  C  K  I  N  F  S  W  L  W  Q  I  Y  V  T  L  D  W  R  Q  C  C  Y  M  E  *  F  G  I  L  H  S  Y  Y  L  E  L  W  I  V  W  N  S  N  G  W  S  *  Y  M  W  F  F  K  *  H  Y  *  R  A  L  P  P  L  D  S   : A  W  S  I  L  S  I  C  K  R  P  L  C  *  G  H  N  P  P  R  A  L  *  L  G  F  S  C  C  S  G  Q  E  S  P  W  A  P  I  S  V  T  S  V  L  L  Y  A  Y  V  Q  G  T  Y  K  R  D  S  H  C  T  T  P  L  L  L  F  P  S  R  C  Q  D  I  *  Y  Q  H  A  V  P  S  R  *  R  C  H  D  L  T  C  T  *  A  R  S  N  L  C  *  C  I  F  P  C  W  K  L  :  I  I  *  M  Y  T  F  V  K  G  T  Y  W  S  C  K  G  K  Q  *  Q  H  K  L  H  R  G  L  H  S  N  S  L  S  C  *  A  A  A  K  T  A  Q  E  N  Y  L  W  T  M  T  M  R  C  R  W  E  E  R  E  G  G  G  R  S  L  S  L  T  A  I  S  L  A  I  K  L  W  L  N  Q  R  L  *  M  D  G  T  R  W  I  K  D  W  S  L  K  R  *  H  Y  *  V  W  K  M  *  E  D  *  R  A  M  S  L  L  D  H  T  S  K  G  T  Q  Q  *  R  K  N  L  N  R  V  D  S  L  L  L  W  K  S  Q  R  C  Q  Y  *  *  G </second_frame>
            <third_frame>   E  S  Y  A  K  A  R  I  P  L  E  V  M  W  T  D  I  D  Y  M  D  G  F  K  D  F  T  L  D  P  V  N  F  P  L  E  R  V  N  F  F  L  R  K  L  H  Q  N  D  Q  K  Y  V  L  I  V  D  P   : G  I  S  I  N  N  T  Y  D  T  Y  R  R  G  M  E  A  D  V  F  I  K  R  D  N  M  P  H  Q  G  V  V  W  P  G  N  V  Y  Y  P  D  F  L  N  P  A  T  E  V  F  W  R  N  E  I  E  K  F  Q  D  L  V  P  F  D  G  L  W  L  D  M  N  E  L  S  N  F  I  T  S  P  P  T  P  S  S  T  F  D  D  P  P  Y  K  I  N  N  S  G  D  H  L  P  I  N  Y  R  T  V  P  A  T  S  T  H  F  G  N  T  I  D  Y  N  V  H  N  L  Y  G  L  L  E  S  R  A  T  Y  S  A  L  V  N  V  T  G  K  R  P  F  I  L  A  R  S  T  F  L  G  S  G  R  Y  T  S  H  W  T  G  D  N  A  A  T  W  N  D  L  A  Y  S  I  P  T  I  L  N  F  G  L  F  G  I  P  M  V  G  A  D  I  C  G  F  S  S  N  T  T  E  E  L  C  R  R  W  I  Q  :  L  G  A  F  Y  P  F  A  R  D  H  S  A  K  D  T  T  P  Q  E  L  Y  S  W  D  S  V  A  A  A  A  K  K  V  L  G  L  R  Y  Q  L  L  P  Y  F  Y  M  L  M  Y  K  A  H  T  K  G  T  P  I  A  R  P  L  F  F  S  F  P  Q  D  A  K  T  F  D  I  S  T  Q  F  L  L  G  K  G  V  M  I  S  P  V  L  K  Q  G  A  T  S  V  D  A  Y  F  P  A  G  N  * :   S  Y  K  C  T  R  S  *  R  E  H  I  G  H  A  R  G  S  N  D  N  T  S  C  T  E  D  C  I  Q  T  P  C  R  A  E  Q  Q  R  K  Q  H  R  R  T  I  C  G  R  *  R  *  G  A  D  G  K  R  G  R  E  V  D  V  R  *  V  *  Q  Q  Y  H  W  Q  *  N  C  G  *  I  R  G  C  E  W  T  V  R  A  G  S  R  I  G  P  *  K  D  D  I  I  R  F  G  K  C  E  R  I  E  E  L  *  A  C  W  I  T  P  A  R  E  H  N  N  E  G  K  T  *  T  E  W  T  V  C  C  Y  G  N  L  R  D  V  N  T  D  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102265" stop="102439"/>
                    <exon start="102559" stop="103205"/>
                    <exon start="103536" stop="103933"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1143</number_coding_nucleotides>
                  <number_encoded_amino_acids>381</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESYAKARIPLEVMWTDIDYMDGFKDFTLDPVNFPLERVNFFLRKLHQNDQKYVLIVDPGISINNTYDTYRRGMEADVFIKRDNMPHQGVVWPGNVYYPDFLNPATEVFWRNEIEKFQDLVPFDGLWLDMNELSNFITSPPTPSSTFDDPPYKINNSGDHLPINYRTVPATSTHFGNTIDYNVHNLYGLLESRATYSALVNVTGKRPFILARSTFLGSGRYTSHWTGDNAATWNDLAYSIPTILNFGLFGIPMVGADICGFSSNTTEELCRRWIQLGAFYPFARDHSAKDTTPQELYSWDSVAAAAKKVLGLRYQLLPYFYMLMYKAHTKGTPIARPLFFSFPQDAKTFDISTQFLLGKGVMISPVLKQGATSVDAYFPAGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 30 chains have been computed
$ 
$ memory statistics:
$ 28808 bytes spliced alignments in total
$ 13 spliced alignments have been stored
$ 2216 bytes was the average size of a spliced alignment
$ 19680 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1640 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 33 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:29:48
-->
